Query psy6686
Match_columns 131
No_of_seqs 127 out of 433
Neff 5.8
Searched_HMMs 46136
Date Sat Aug 17 00:28:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03232 COQ7: Ubiquinone bios 100.0 7.2E-55 1.6E-59 333.1 16.2 131 1-131 41-172 (172)
2 KOG4061|consensus 100.0 3.8E-54 8.2E-59 330.3 13.0 131 1-131 86-217 (217)
3 cd01042 DMQH Demethoxyubiquino 100.0 4.6E-52 1E-56 315.9 15.8 128 1-130 38-165 (165)
4 COG2941 CAT5 Ubiquinone biosyn 100.0 3.8E-51 8.2E-56 314.8 14.4 126 1-131 79-204 (204)
5 cd00657 Ferritin_like Ferritin 98.2 3.7E-05 8.1E-10 51.3 10.1 91 2-100 37-127 (130)
6 cd01045 Ferritin_like_AB Uncha 97.8 0.0005 1.1E-08 47.9 11.1 90 2-98 37-134 (139)
7 cd07908 Mn_catalase_like Manga 97.5 0.00042 9E-09 51.1 7.3 92 2-98 57-149 (154)
8 cd01052 DPSL DPS-like protein, 97.4 0.0024 5.2E-08 46.1 10.0 95 2-99 48-144 (148)
9 cd01044 Ferritin_CCC1_N Ferrit 97.4 0.0022 4.7E-08 45.9 9.3 82 2-98 37-118 (125)
10 cd01053 AOX Alternative oxidas 97.4 0.00087 1.9E-08 51.5 7.2 92 3-99 50-161 (168)
11 PRK10635 bacterioferritin; Pro 97.2 0.003 6.6E-08 47.6 8.8 85 3-99 49-134 (158)
12 PF01786 AOX: Alternative oxid 97.2 0.0037 7.9E-08 49.5 9.3 91 3-98 90-201 (207)
13 PLN02478 alternative oxidase 96.9 0.0098 2.1E-07 49.7 9.2 91 3-98 194-304 (328)
14 cd00907 Bacterioferritin Bacte 96.5 0.025 5.5E-07 40.9 8.6 85 3-98 48-132 (153)
15 PF02915 Rubrerythrin: Rubrery 96.5 0.01 2.3E-07 41.2 6.3 92 2-98 39-132 (137)
16 cd01051 Mn_catalase Manganese 96.4 0.029 6.2E-07 42.3 8.3 84 3-98 64-147 (156)
17 PF00210 Ferritin: Ferritin-li 96.3 0.12 2.6E-06 36.0 10.7 91 2-98 41-131 (142)
18 TIGR00754 bfr bacterioferritin 95.9 0.084 1.8E-06 39.0 8.7 86 3-99 49-134 (157)
19 cd01048 Ferritin_like_AB2 Unch 95.8 0.26 5.6E-06 35.9 10.7 91 2-101 36-133 (135)
20 COG1633 Uncharacterized conser 95.7 0.12 2.6E-06 39.8 9.0 93 2-99 63-162 (176)
21 PF13668 Ferritin_2: Ferritin- 95.6 0.13 2.8E-06 36.8 8.5 83 1-97 47-129 (137)
22 PRK13456 DNA protection protei 94.6 0.37 8.1E-06 37.7 8.9 92 3-101 63-160 (186)
23 cd01041 Rubrerythrin Rubreryth 94.1 0.57 1.2E-05 33.6 8.4 81 3-98 44-125 (134)
24 cd01055 Nonheme_Ferritin nonhe 93.3 0.94 2E-05 32.9 8.6 86 3-98 46-131 (156)
25 cd01042 DMQH Demethoxyubiquino 93.2 0.58 1.3E-05 35.8 7.5 50 60-114 15-68 (165)
26 PF03232 COQ7: Ubiquinone bios 91.3 1.3 2.8E-05 34.0 7.4 56 55-114 12-71 (172)
27 PF10118 Metal_hydrol: Predict 90.7 6.8 0.00015 31.5 11.4 95 3-101 68-168 (253)
28 TIGR02284 conserved hypothetic 90.5 5.4 0.00012 29.2 11.4 86 6-98 43-134 (139)
29 cd01056 Euk_Ferritin eukaryoti 89.5 4.2 9E-05 30.1 8.7 85 3-99 48-136 (161)
30 cd01043 DPS DPS protein, ferri 89.2 3.9 8.5E-05 29.1 8.1 92 2-96 40-132 (139)
31 PF04305 DUF455: Protein of un 88.7 3.5 7.5E-05 33.5 8.3 90 2-99 108-201 (253)
32 PF14518 Haem_oxygenas_2: Iron 86.7 4.2 9E-05 27.6 6.6 70 4-73 14-90 (106)
33 PF13668 Ferritin_2: Ferritin- 86.3 6.5 0.00014 27.9 7.8 62 45-106 1-67 (137)
34 PRK10304 ferritin; Provisional 86.2 8 0.00017 29.2 8.5 84 3-99 48-137 (165)
35 PRK12775 putative trifunctiona 83.0 11 0.00023 36.2 9.5 92 1-98 898-990 (1006)
36 cd01045 Ferritin_like_AB Uncha 81.6 8.7 0.00019 26.2 6.6 45 52-101 5-49 (139)
37 PF11583 AurF: P-aminobenzoate 81.1 20 0.00043 29.0 9.4 92 3-101 123-222 (304)
38 COG2976 Uncharacterized protei 80.1 22 0.00049 28.3 9.0 78 3-92 5-82 (207)
39 COG1633 Uncharacterized conser 72.8 22 0.00049 27.2 7.1 51 45-100 24-74 (176)
40 COG2941 CAT5 Ubiquinone biosyn 71.8 15 0.00032 29.2 5.9 50 60-114 56-109 (204)
41 PF12960 DUF3849: Protein of u 70.8 4 8.6E-05 30.3 2.5 45 44-95 21-65 (133)
42 cd01046 Rubrerythrin_like rubr 70.5 35 0.00076 24.1 8.3 71 3-98 44-114 (123)
43 PF10624 TraS: Plasmid conjuga 69.4 3.3 7.2E-05 31.2 1.8 45 24-68 74-118 (164)
44 PF02084 Bindin: Bindin; Inte 68.2 11 0.00023 30.6 4.6 38 60-99 133-171 (238)
45 PF02915 Rubrerythrin: Rubrery 68.1 28 0.00061 23.6 6.3 42 55-99 8-49 (137)
46 cd01044 Ferritin_CCC1_N Ferrit 55.9 47 0.001 23.3 5.7 39 56-99 9-47 (125)
47 cd00657 Ferritin_like Ferritin 50.8 63 0.0014 20.6 6.6 41 55-100 8-48 (130)
48 COG3105 Uncharacterized protei 50.4 1E+02 0.0022 23.1 6.7 68 31-99 15-85 (138)
49 cd00904 Ferritin Ferritin iron 50.2 1E+02 0.0022 22.7 8.2 81 3-95 48-132 (160)
50 PF05974 DUF892: Domain of unk 50.1 1E+02 0.0022 22.8 9.4 64 54-122 14-82 (159)
51 KOG4061|consensus 50.1 25 0.00053 27.9 3.7 72 44-120 37-125 (217)
52 COG3461 Uncharacterized conser 49.8 17 0.00036 25.7 2.4 25 77-101 44-68 (103)
53 PF05461 ApoL: Apolipoprotein 48.9 41 0.00088 28.1 5.0 40 30-74 130-169 (313)
54 PF06522 B12D: NADH-ubiquinone 43.4 17 0.00037 23.9 1.6 23 26-48 6-28 (73)
55 PF12939 DUF3837: Domain of un 42.2 17 0.00037 25.9 1.6 70 21-93 16-85 (102)
56 PF09537 DUF2383: Domain of un 41.4 19 0.00041 24.6 1.7 67 3-69 41-110 (111)
57 PF06295 DUF1043: Protein of u 37.9 1.5E+02 0.0033 21.3 6.9 20 29-48 4-23 (128)
58 PHA00022 VII minor coat protei 36.4 9.5 0.00021 21.0 -0.4 11 32-42 15-25 (28)
59 cd07375 Anticodon_Ia_like Anti 35.3 1E+02 0.0023 19.9 4.6 41 25-65 10-60 (117)
60 PF12902 Ferritin-like: Ferrit 34.9 37 0.0008 27.0 2.6 28 3-30 39-66 (227)
61 COG0060 IleS Isoleucyl-tRNA sy 34.8 70 0.0015 30.8 4.8 63 24-95 650-725 (933)
62 PF02830 V4R: V4R domain; Int 34.6 33 0.00071 21.3 1.9 19 30-48 23-41 (62)
63 PF12713 DUF3806: Domain of un 34.3 77 0.0017 21.3 3.8 35 9-44 3-38 (87)
64 PRK11677 hypothetical protein; 34.1 1.5E+02 0.0033 21.9 5.6 20 28-47 3-22 (134)
65 PF11239 DUF3040: Protein of u 31.2 1.6E+02 0.0034 19.4 6.5 43 3-45 5-59 (82)
66 PF10118 Metal_hydrol: Predict 30.2 2E+02 0.0044 23.0 6.2 42 53-99 36-77 (253)
67 PF09527 ATPase_gene1: Putativ 29.2 55 0.0012 19.8 2.2 18 27-44 31-48 (55)
68 PRK12775 putative trifunctiona 29.1 1.9E+02 0.004 28.0 6.7 48 49-101 864-911 (1006)
69 PF06305 DUF1049: Protein of u 28.8 54 0.0012 20.3 2.2 20 25-44 18-37 (68)
70 PF06648 DUF1160: Protein of u 28.6 1.1E+02 0.0023 22.4 4.0 46 59-104 17-62 (122)
71 COG2406 Protein distantly rela 27.8 2.8E+02 0.0062 21.3 7.2 92 4-102 61-158 (172)
72 PHA02108 hypothetical protein 27.1 1E+02 0.0022 18.6 3.0 27 29-56 10-37 (48)
73 PF12732 YtxH: YtxH-like prote 26.9 1.8E+02 0.0038 18.6 6.0 14 31-44 5-18 (74)
74 PF14516 AAA_35: AAA-like doma 26.8 1.4E+02 0.003 24.6 4.9 68 12-90 222-290 (331)
75 cd07908 Mn_catalase_like Manga 26.7 2.4E+02 0.0052 20.2 5.6 23 77-99 45-67 (154)
76 PF12022 DUF3510: Domain of un 26.6 1.6E+02 0.0035 21.0 4.6 52 22-73 27-84 (125)
77 KOG2332|consensus 26.0 3.2E+02 0.0069 21.2 6.4 74 3-87 61-136 (178)
78 PF15119 APOC4: Apolipoprotein 25.4 1.3E+02 0.0028 21.1 3.7 20 54-73 50-69 (99)
79 PRK12537 RNA polymerase sigma 24.3 2.8E+02 0.0062 20.1 5.9 51 62-118 125-175 (182)
80 PF03710 GlnE: Glutamate-ammon 24.2 3.6E+02 0.0078 21.3 8.8 51 79-129 57-108 (247)
81 PF12597 DUF3767: Protein of u 23.0 74 0.0016 22.9 2.2 39 23-61 38-78 (118)
82 COG3771 Predicted membrane pro 22.6 37 0.00081 23.8 0.6 38 10-47 28-66 (97)
83 PF06348 DUF1059: Protein of u 22.4 71 0.0015 19.9 1.8 43 45-87 10-52 (57)
84 COG2960 Uncharacterized protei 22.4 3E+02 0.0064 19.6 5.6 79 22-102 6-87 (103)
85 PF07862 Nif11: Nitrogen fixat 22.1 71 0.0015 18.8 1.7 26 77-103 15-40 (49)
86 KOG1467|consensus 21.4 1.8E+02 0.0039 26.4 4.6 40 63-102 309-351 (556)
87 PRK09047 RNA polymerase factor 20.9 3E+02 0.0066 19.2 6.2 51 60-116 96-146 (161)
88 PF07539 DRIM: Down-regulated 20.4 1.8E+02 0.0038 21.4 3.9 42 47-92 35-76 (141)
89 PF12607 DUF3772: Protein of u 20.3 93 0.002 19.7 2.1 20 9-30 22-41 (64)
No 1
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=100.00 E-value=7.2e-55 Score=333.11 Aligned_cols=131 Identities=55% Similarity=0.874 Sum_probs=126.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhcH
Q psy6686 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD-PAANR 79 (131)
Q Consensus 1 m~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~-~~~~~ 79 (131)
||++|.+|++||+++|+++|+|||+|+|+|+++||+||++||++|++++|+||+|||++|++|||+||++|++. +..++
T Consensus 41 ~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~ 120 (172)
T PF03232_consen 41 MAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGALTALLGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDP 120 (172)
T ss_pred HHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999954 24688
Q ss_pred HHHHHHHHHHHHHHhHHHhhHhCCCCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy6686 80 ELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIGVAKVV 131 (131)
Q Consensus 80 ~l~~~i~~~r~dE~~H~d~A~~~ga~~~p~~~~~~~~ik~~~~~ai~la~ri 131 (131)
+++++|++||+||.+|+|+|+++|++++|+|++|+++||+||++|||+|+||
T Consensus 121 ~l~~~i~~~r~DE~~H~d~A~~~~a~~~p~~~~l~~~i~~~~~~ai~~a~ri 172 (172)
T PF03232_consen 121 ELRAIIEQFRDDELEHRDTAIEAGAEKAPAYRLLSAVIKAGCKAAIWLAKRI 172 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999997
No 2
>KOG4061|consensus
Probab=100.00 E-value=3.8e-54 Score=330.28 Aligned_cols=131 Identities=63% Similarity=1.025 Sum_probs=128.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhcH
Q psy6686 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD-PAANR 79 (131)
Q Consensus 1 m~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~-~~~~~ 79 (131)
|||||++|+..|++++.++|||||+|.|+|+++||+||++|||+|++++||||+|||++|..|||+||++|..+ ++..+
T Consensus 86 mWdqEk~Hl~tf~~l~~k~rVrpT~l~P~w~vagfalGaGTALlg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~k 165 (217)
T KOG4061|consen 86 MWDQEKEHLKTFENLALKHRVRPTVLTPLWNVAGFALGAGTALLGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHK 165 (217)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchhhhhHHHHHHHHhccchhhhChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 77889
Q ss_pred HHHHHHHHHHHHHHhHHHhhHhCCCCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy6686 80 ELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIGVAKVV 131 (131)
Q Consensus 80 ~l~~~i~~~r~dE~~H~d~A~~~ga~~~p~~~~~~~~ik~~~~~ai~la~ri 131 (131)
+|+.+|++|||||+||+|+|+++++.++|+|.+|+.+||.|||+|||+||||
T Consensus 166 ell~~i~~fRDeEleHhdtgv~hda~~Apay~~lt~~Iq~gCk~AI~~~eri 217 (217)
T KOG4061|consen 166 ELLSTITKFRDEELEHHDTGVEHDAEKAPAYAALTEIIQTGCKVAIWIAERI 217 (217)
T ss_pred HHHHHHHHHhHHHHHhhccccccCcccCcHHHHHHHHHHHHhHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999997
No 3
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=100.00 E-value=4.6e-52 Score=315.85 Aligned_cols=128 Identities=57% Similarity=0.904 Sum_probs=124.3
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHH
Q psy6686 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRE 80 (131)
Q Consensus 1 m~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~ 80 (131)
|+++|++||+||+++|+++|+|||+|+|+||++||+||++||++|++++|+||+|||++|++||++||++|+.+ .+++
T Consensus 38 ~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~ql~~L~~~--~d~~ 115 (165)
T cd01042 38 MLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKAAMACTAAVETVVEEHYNDQLRELPAQ--PDKE 115 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999874 2688
Q ss_pred HHHHHHHHHHHHHhHHHhhHhCCCCCChhHHHHHHHHHHHHHHHHHHHhc
Q psy6686 81 LMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIGVAKV 130 (131)
Q Consensus 81 l~~~i~~~r~dE~~H~d~A~~~ga~~~p~~~~~~~~ik~~~~~ai~la~r 130 (131)
++++|+|||+||.+|+|+|.++|++++|+|++++++++.|||++||+|+|
T Consensus 116 l~~~l~~~r~DE~~H~d~A~~~ga~~a~~~~~~~~~i~~~~~~~i~~a~r 165 (165)
T cd01042 116 LRAIIEQFRDDELEHADIAEELGAEKAPLYALLKALIKAGCKVAIWLAKR 165 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcCcchHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999986
No 4
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=100.00 E-value=3.8e-51 Score=314.77 Aligned_cols=126 Identities=43% Similarity=0.662 Sum_probs=120.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHH
Q psy6686 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRE 80 (131)
Q Consensus 1 m~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~ 80 (131)
||+||++||+||++++.++++|||+||||||.+||+||++||++|+|++|+||++||+||++||++||++|+. .+.+
T Consensus 79 m~d~E~~HL~~f~~~l~e~~vRPsll~P~W~~~~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L~~---~d~~ 155 (204)
T COG2941 79 MADEEIDHLAWFEQRLLELGVRPSLLNPLWYAAAFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLRELPN---LDAE 155 (204)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988 4678
Q ss_pred HHHHHHHHHHHHHhHHHhhHhCCCCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy6686 81 LMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCKVAIGVAKVV 131 (131)
Q Consensus 81 l~~~i~~~r~dE~~H~d~A~~~ga~~~p~~~~~~~~ik~~~~~ai~la~ri 131 (131)
++++|.||||||.+|.|+|+..| .++++.+++.++|.+||++||+|+||
T Consensus 156 lr~~l~qfR~DE~eH~d~Ai~a~--~a~~~~~i~~~m~~~cRi~i~~a~rI 204 (204)
T COG2941 156 LRAILAQFRDDELEHLDNAIAAG--EAIFPAPITKAMKLICRIMIKSAYRI 204 (204)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhC--CCCccchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999944 47788999999999999999999997
No 5
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.18 E-value=3.7e-05 Score=51.30 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHH
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANREL 81 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l 81 (131)
..+|.+|...|.+++..++..|+...+. .....+......+...++......|......|...++... ++.+
T Consensus 37 a~~E~~H~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~ 108 (130)
T cd00657 37 ADEERRHADALAERLRELGGTPPLPPAH---LLAAYALPKTSDDPAEALRAALEVEARAIAAYRELIEQAD-----DPEL 108 (130)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHH---HHHhcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHH
Confidence 4689999999999999999999877665 2233344456667777888889999999999999998763 5677
Q ss_pred HHHHHHHHHHHHhHHHhhH
Q psy6686 82 MDVIHKFRDEEQEHHDTGL 100 (131)
Q Consensus 82 ~~~i~~~r~dE~~H~d~A~ 100 (131)
++.+..+..||..|.+...
T Consensus 109 ~~~~~~~~~~E~~H~~~~~ 127 (130)
T cd00657 109 RRLLERILADEQRHAAWFR 127 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8889999999999987643
No 6
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=97.85 E-value=0.0005 Score=47.89 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCCccchhHHHHHHHHHH------HHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6686 2 WDQEKAHKAKFEELIRKYR--VRPTALLPFWNVAGFVLG------AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS 73 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~--~RpS~L~PlW~~~gf~LG------a~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~ 73 (131)
-++|..|..++.+++.+++ .-|+. +.....+..++ ..+...+..-.+-.-...|+.....|+.-+...
T Consensus 37 a~eE~~H~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~-- 112 (139)
T cd01045 37 AEEEKEHAERLEELYEKLFGEELPEL--EPEDYKEEVEEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKA-- 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcc--cHHHHHHHHhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 4689999999999999986 33433 22222333333 345677788888889999999999999999765
Q ss_pred CChhcHHHHHHHHHHHHHHHhHHHh
Q psy6686 74 DPAANRELMDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 74 ~~~~~~~l~~~i~~~r~dE~~H~d~ 98 (131)
.++.++++++++.+||.+|.+.
T Consensus 113 ---~d~~~~~~~~~l~~~E~~H~~~ 134 (139)
T cd01045 113 ---EDPEVKKLFEELAEEERGHLRL 134 (139)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHH
Confidence 2467888899999999999764
No 7
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=97.54 E-value=0.00042 Score=51.06 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHH
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLG-AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRE 80 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LG-a~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~ 80 (131)
-.+|..|..+|.+++.++|..|+...+.=-...+..+ ......+..-.+-+-...|+.--..|++.+... .++.
T Consensus 57 A~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~-----~d~~ 131 (154)
T cd07908 57 AIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI-----KDPY 131 (154)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcchhhccccCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCHH
Confidence 3689999999999999999999753221000000000 111112334477888999999999999999865 3577
Q ss_pred HHHHHHHHHHHHHhHHHh
Q psy6686 81 LMDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 81 l~~~i~~~r~dE~~H~d~ 98 (131)
+++.++.+..||.+|.+.
T Consensus 132 ~r~ll~~I~~eE~~H~~~ 149 (154)
T cd07908 132 IRALLNRIILDEKLHIKI 149 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788899999999999864
No 8
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=97.43 E-value=0.0024 Score=46.14 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchh-HHHHHHHHHHH-HhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcH
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTALLP-FWNVAGFVLGA-GSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 79 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L~P-lW~~~gf~LGa-~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~ 79 (131)
.++|.+|...+.+++..+|++|..-.- +...+|..++- .....+.+-.+-..-..|+.+...|++.++.-.. .|.
T Consensus 48 ~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~---~D~ 124 (148)
T cd01052 48 AEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG---KDP 124 (148)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCh
Confidence 468999999999999999999998442 22222211221 1233345566777888899999999999975422 577
Q ss_pred HHHHHHHHHHHHHHhHHHhh
Q psy6686 80 ELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 80 ~l~~~i~~~r~dE~~H~d~A 99 (131)
..++.+..+-.||.+|.+.-
T Consensus 125 ~t~~ll~~~l~de~~h~~~~ 144 (148)
T cd01052 125 VTYDLALAILNEEIEHEEDL 144 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777999999999998753
No 9
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=97.41 E-value=0.0022 Score=45.95 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHH
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANREL 81 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l 81 (131)
.++|..|...|.+++.+++..|. .|-+.+ +.+..++.++|...++-.....|.---.-|.++...
T Consensus 37 A~~E~~H~~~~~~~~~~~~~~~~--~~~~~~--~~~~~l~~~~g~~~~l~~~~~~E~~ai~~Y~~~~~~----------- 101 (125)
T cd01044 37 AEDERRHAEFWKKFLGKRGVPPP--RPKLKI--FFYKLLARIFGPTFVLKLLERGEERAIEKYDRLLEE----------- 101 (125)
T ss_pred HHHHHHHHHHHHHHHhhccCCCC--CccHHH--HHHHHHHHHHhHHHHHHHHHHhHHhhHhhHHhhhhh-----------
Confidence 47899999999999999999986 343333 455667778888888888888898888888888765
Q ss_pred HHHHHHHHHHHHhHHHh
Q psy6686 82 MDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 82 ~~~i~~~r~dE~~H~d~ 98 (131)
+..+.++-.||.+|...
T Consensus 102 ~~~~~~Ii~dE~~H~~~ 118 (125)
T cd01044 102 RPELKEIIADELEHEEV 118 (125)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34588999999999754
No 10
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=97.36 E-value=0.00087 Score=51.50 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHH----HHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFV----LGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD---- 74 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~----LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~---- 74 (131)
++|..||-.|.++- .||++.=.+-+.+-+ +=++.=++.++.+.-|+.-+|+.-..=|.+-|+++...
T Consensus 50 eNErmHLltf~~l~-----~p~~~~r~~v~~~q~vfy~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~ 124 (168)
T cd01053 50 ENERMHLLIFEELG-----GPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPD 124 (168)
T ss_pred HHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCC
Confidence 57899999998543 376655444322222 11345678899999999999999999999999887652
Q ss_pred ------------ChhcHHHHHHHHHHHHHHHhHHHhh
Q psy6686 75 ------------PAANRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 75 ------------~~~~~~l~~~i~~~r~dE~~H~d~A 99 (131)
..++..++++|..+|+||.+|++.=
T Consensus 125 ~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~vn 161 (168)
T cd01053 125 LPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKVN 161 (168)
T ss_pred CCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHHHH
Confidence 1146779999999999999999864
No 11
>PRK10635 bacterioferritin; Provisional
Probab=97.23 E-value=0.003 Score=47.61 Aligned_cols=85 Identities=16% Similarity=0.061 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH-hhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAG-SALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANREL 81 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~-tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l 81 (131)
.+|.+|-..|-+||..+|+.|++ .|+ +.. .+ -.-+-.+-+--+.|..+...|++-++.-... +|...
T Consensus 49 ~eEm~HA~~l~eRIl~LgG~P~~-~~~--------~~~~~g-~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~--~D~~s 116 (158)
T PRK10635 49 IDEMKHADKYIERILFLEGIPNL-QDL--------GKLNIG-EDVEEMLRSDLRLELEGAKDLREAIAYADSV--HDYVS 116 (158)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC-CCC--------CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHH
Confidence 47999999999999999999997 333 111 12 2445567888899999999999999876532 45666
Q ss_pred HHHHHHHHHHHHhHHHhh
Q psy6686 82 MDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 82 ~~~i~~~r~dE~~H~d~A 99 (131)
++.++.|-+||.+|.+-=
T Consensus 117 ~~ll~~iL~dEe~H~~~l 134 (158)
T PRK10635 117 RDMMIEILADEEGHIDWL 134 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666999999999998753
No 12
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=97.20 E-value=0.0037 Score=49.48 Aligned_cols=91 Identities=30% Similarity=0.337 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHH---HHHHHHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWN---VAGFVLG-AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD---- 74 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~---~~gf~LG-a~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~---- 74 (131)
++|.-||-.|.++- .|+++.=+.- .+.|... ++.-++.++++.-+++-+|+.-..=|.+=|+++...
T Consensus 90 eNErmHLli~~~l~-----~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~g~l~~ 164 (207)
T PF01786_consen 90 ENERMHLLIFEELG-----KPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDEGKLPN 164 (207)
T ss_pred HHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Confidence 57899999999743 4665443321 1222222 467788999999999999999999999999887641
Q ss_pred -------------ChhcHHHHHHHHHHHHHHHhHHHh
Q psy6686 75 -------------PAANRELMDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 75 -------------~~~~~~l~~~i~~~r~dE~~H~d~ 98 (131)
++.+..++++|..+|+||.+|+|.
T Consensus 165 ~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~v 201 (207)
T PF01786_consen 165 MPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDV 201 (207)
T ss_pred CCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHh
Confidence 111567999999999999999985
No 13
>PLN02478 alternative oxidase
Probab=96.86 E-value=0.0098 Score=49.72 Aligned_cols=91 Identities=26% Similarity=0.293 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHH---H-HHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVA---G-FVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD---- 74 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~---g-f~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~---- 74 (131)
++|.-||-.|.++. .|+++.=+.-.. . |.+=++.=++.++.+.-|+.-+|+.-..-|.+-|+++...
T Consensus 194 eNERMHLLtf~~l~-----~p~w~eR~lv~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEEEAV~TYT~~L~eid~G~l~n 268 (328)
T PLN02478 194 ENERMHLMTFMEVA-----KPKWYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIEN 268 (328)
T ss_pred HHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 57889999999876 477655443111 1 1122346678899999999999999999999999987431
Q ss_pred ------------ChhcHHHHHHHHHHHHHHHhHHHh
Q psy6686 75 ------------PAANRELMDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 75 ------------~~~~~~l~~~i~~~r~dE~~H~d~ 98 (131)
-.++..++++|..+|+||.+|+|.
T Consensus 269 ~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdV 304 (328)
T PLN02478 269 VPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDV 304 (328)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhcc
Confidence 113677999999999999999985
No 14
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.53 E-value=0.025 Score=40.94 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELM 82 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~ 82 (131)
++|.+|...+-+++..+|.+|.. .|+-.+. .+ -...-.+.....-|+.+.+.|++-+..-.. ..|..+.
T Consensus 48 ~ee~~Ha~~lae~i~~lGg~p~~-~~~~~~~-------~~-~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~--~~D~~t~ 116 (153)
T cd00907 48 IEEMKHADKLIERILFLEGLPNL-QRLGKLR-------IG-EDVPEMLENDLALEYEAIAALNEAIALCEE--VGDYVSR 116 (153)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC-CcCCCCC-------cC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHH
Confidence 68999999999999999999976 2211110 01 124455677777788888899888764422 2467777
Q ss_pred HHHHHHHHHHHhHHHh
Q psy6686 83 DVIHKFRDEEQEHHDT 98 (131)
Q Consensus 83 ~~i~~~r~dE~~H~d~ 98 (131)
+.++.+-.||.+|...
T Consensus 117 ~~l~~~~~~e~~h~~~ 132 (153)
T cd00907 117 DLLEEILEDEEEHIDW 132 (153)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999653
No 15
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.53 E-value=0.01 Score=41.22 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhh--cCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcH
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSAL--LGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 79 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal--~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~ 79 (131)
-++|..|..+|.+++.+.+.......+--...++........ .+...++-.....|+.--..|....+..+ ++
T Consensus 39 A~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~ 113 (137)
T PF02915_consen 39 AEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAP-----DP 113 (137)
T ss_dssp HHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SH
T ss_pred HHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CH
Confidence 478999999999999998532211100000000000000000 04455666667778888999999999883 46
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy6686 80 ELMDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 80 ~l~~~i~~~r~dE~~H~d~ 98 (131)
+++..+..+..||.+|.+.
T Consensus 114 ~~~~~~~~l~~~E~~H~~~ 132 (137)
T PF02915_consen 114 EIRKLFEELAKEEKEHEDL 132 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999875
No 16
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.38 E-value=0.029 Score=42.28 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELM 82 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~ 82 (131)
.+|..|+.++.+++.+++.-|.- .| |. ++| +..--.-...+--..+-|..--..|.++++.. +|+.++
T Consensus 64 ~eEm~H~e~la~~I~~Lg~~~~g-~p-w~-~~y----v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~-----~Dp~v~ 131 (156)
T cd01051 64 TEELSHLEMVATLIAMLLKDSQG-VP-WT-AAY----IQSSGNLVADLRSNIAAESRARLTYERLYEMT-----DDPGVK 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-Cc-CC-Ccc----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCHHHH
Confidence 58999999999999999975544 33 32 333 22222344555666777899999999999887 368888
Q ss_pred HHHHHHHHHHHhHHHh
Q psy6686 83 DVIHKFRDEEQEHHDT 98 (131)
Q Consensus 83 ~~i~~~r~dE~~H~d~ 98 (131)
+++..+..||..|.+.
T Consensus 132 ~~l~~I~~rE~~H~~~ 147 (156)
T cd01051 132 DTLSFLLVREIVHQNA 147 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999765
No 17
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=96.30 E-value=0.12 Score=35.96 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHH
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANREL 81 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l 81 (131)
.++|.+|..++.+++..+|..|+.-..-..- +-.....-..+..+...-+.|..+...|++.+..-... +|..+
T Consensus 41 a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~--~D~~t 114 (142)
T PF00210_consen 41 AEEEREHADELAERILMLGGKPSGSPVEIPE----IPKPPEWTDPREALEAALEDEKEIIEEYRELIKLAEKE--GDPET 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-SSTSHHHHHH----HHSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcHHHhhh----hhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHH
Confidence 4789999999999999999999885442222 00000123677788889999999999999999766432 47888
Q ss_pred HHHHHHHHHHHHhHHHh
Q psy6686 82 MDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 82 ~~~i~~~r~dE~~H~d~ 98 (131)
.+.+..|.+||.+|...
T Consensus 115 ~~~~~~~l~~~~~~~~~ 131 (142)
T PF00210_consen 115 ADFLDEFLEEEEKHIWM 131 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999999999653
No 18
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=95.91 E-value=0.084 Score=38.96 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELM 82 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~ 82 (131)
.+|.+|..+|-++|..+|++|.+- |+ -....--...-.+-..-.-|..+..-|++.++.-.. .+|....
T Consensus 49 ~EE~~Ha~~laeri~~lGg~p~~~-~i--------~~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~--~~D~~t~ 117 (157)
T TIGR00754 49 IDEMKHADEIIERILFLEGLPNLQ-DL--------GKLRIGETVREMLEADLALELDVLNRLKEAIAYAEE--VRDYVSR 117 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-cC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHH
Confidence 479999999999999999999942 11 000011122334455566788889999999974422 2456666
Q ss_pred HHHHHHHHHHHhHHHhh
Q psy6686 83 DVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 83 ~~i~~~r~dE~~H~d~A 99 (131)
+.++.|-.||.+|...-
T Consensus 118 ~ll~~~i~eee~h~~~l 134 (157)
T TIGR00754 118 DLLEEILEDEEEHIDWL 134 (157)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66999999999997653
No 19
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=95.79 E-value=0.26 Score=35.92 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-------ccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRP-------TALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD 74 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~Rp-------S~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~ 74 (131)
.+.|+.|...+..++.+.++-- +.+.|.. +-=....+...+..++-.-..+|..=-.-|++=+..-
T Consensus 36 a~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~----~~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~--- 108 (135)
T cd01048 36 AESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQ----YNQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERT--- 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccccchh----HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 4689999999999999888632 2232222 1111345667777788888888999999999988766
Q ss_pred ChhcHHHHHHHHHHHHHHHhHHHhhHh
Q psy6686 75 PAANRELMDVIHKFRDEEQEHHDTGLE 101 (131)
Q Consensus 75 ~~~~~~l~~~i~~~r~dE~~H~d~A~~ 101 (131)
.+++++.++..+++.|.+|..-+..
T Consensus 109 --~d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 109 --QNPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999876643
No 20
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.12 Score=39.77 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-ccchhHHHHHHHHHHHHhh---hcCchh---HHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRP-TALLPFWNVAGFVLGAGSA---LLGPKG---AMACTVAVESVIVDHYNEQLRALMSD 74 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~Rp-S~L~PlW~~~gf~LGa~ta---l~G~~~---~~a~t~avE~~V~~Hy~~ql~~L~~~ 74 (131)
-++|.+|+.+|++++.++.-+| |..-+.|..-++.+..+.= ..|... +.-.....|+.=..-|...+..+..
T Consensus 63 a~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~- 141 (176)
T COG1633 63 ADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVN- 141 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 4799999999999999999998 6677888888877776544 333222 2223334466666778888888843
Q ss_pred ChhcHHHHHHHHHHHHHHHhHHHhh
Q psy6686 75 PAANRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 75 ~~~~~~l~~~i~~~r~dE~~H~d~A 99 (131)
...+..++.+-+||..|...-
T Consensus 142 ----~~~~~~~~~~a~~E~~H~~~l 162 (176)
T COG1633 142 ----EEAKKLFKTIADDEKGHASGL 162 (176)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 556667999999999996543
No 21
>PF13668 Ferritin_2: Ferritin-like domain
Probab=95.59 E-value=0.13 Score=36.81 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHH
Q psy6686 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRE 80 (131)
Q Consensus 1 m~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~ 80 (131)
|.++|..|...+++.+. |.+|. -.|-... .......+...+..-..+|.....=|......+ .+++
T Consensus 47 i~~~E~~H~~~l~~~l~--g~~~~-~~~~~~~------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~-----~~~~ 112 (137)
T PF13668_consen 47 IADQEQGHVDFLQAALE--GGRPV-PPPAYDF------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQI-----EDPE 112 (137)
T ss_pred HHHHHHHHHHHHHHHhc--CCCCC-CCCcccc------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCHH
Confidence 46899999999999996 43332 1111111 445555666777777789999999999999887 3577
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy6686 81 LMDVIHKFRDEEQEHHD 97 (131)
Q Consensus 81 l~~~i~~~r~dE~~H~d 97 (131)
++..+.++-.+|.+|..
T Consensus 113 ~~~~~~~i~~~Ea~H~~ 129 (137)
T PF13668_consen 113 LKALAASIAGVEARHAA 129 (137)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88889999999999964
No 22
>PRK13456 DNA protection protein DPS; Provisional
Probab=94.64 E-value=0.37 Score=37.65 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhH-HHHHHHHHHHHhhhcCch-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPF-WNVAGFVLGAGSALLGPK-----GAMACTVAVESVIVDHYNEQLRALMSDPA 76 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~Pl-W~~~gf~LGa~tal~G~~-----~~~a~t~avE~~V~~Hy~~ql~~L~~~~~ 76 (131)
.+|..|...+.+||.++|.-|.. +|- |+..+- -.-+-...+ ..+--.-.=|+-.-+.|++=++.....
T Consensus 63 ~EEl~HA~~lAeRI~qLGG~P~~-~p~~~~~ls~---~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~k-- 136 (186)
T PRK13456 63 LEDRNHFEALVPRIYELGGKLPR-DIREFHDISA---CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGK-- 136 (186)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC-ChHHHhhhhc---CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 48999999999999999999987 555 643211 111112221 122222233777778999999988763
Q ss_pred hcHHHHHHHHHHHHHHHhHHHhhHh
Q psy6686 77 ANRELMDVIHKFRDEEQEHHDTGLE 101 (131)
Q Consensus 77 ~~~~l~~~i~~~r~dE~~H~d~A~~ 101 (131)
|+--++++.++-.||.+|.+.=.+
T Consensus 137 -Dp~T~~l~~~IL~dE~eH~~dl~~ 160 (186)
T PRK13456 137 -DPRTYDLALAILQEEIEHEAWFSE 160 (186)
T ss_pred -CccHHHHHHHHHHHHHHHHHHHHH
Confidence 555556699999999999987544
No 23
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=94.08 E-value=0.57 Score=33.56 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHH-HHHHHHHHHHHhcCCChhcHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESV-IVDHYNEQLRALMSDPAANREL 81 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~-V~~Hy~~ql~~L~~~~~~~~~l 81 (131)
.+|..|-..|-++|..++.+|. .|.=.. -...-.+-..-+.|.. +.+-|++=++.-. .+++...
T Consensus 44 ~eE~~HA~~~~~~l~~l~g~~~--~~~~~~-----------~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~--~e~d~~~ 108 (134)
T cd01041 44 ENEKEHAKGHFKLLKGLGGGDT--GPPIGI-----------GDTLENLKAAIAGETYEYTEMYPEFAEVAE--EEGFKEA 108 (134)
T ss_pred HHHHHHHHHHHHHHhcCCCCCc--CCCCCc-----------chHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HcCCHHH
Confidence 6899999999999999999999 331110 0111333444455553 5566766665443 3367788
Q ss_pred HHHHHHHHHHHHhHHHh
Q psy6686 82 MDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 82 ~~~i~~~r~dE~~H~d~ 98 (131)
...++.+..||.+|.+.
T Consensus 109 ~~~f~~i~~~E~~H~~~ 125 (134)
T cd01041 109 ARSFEAIAEAEKVHAER 125 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999999999764
No 24
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=93.34 E-value=0.94 Score=32.92 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELM 82 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~ 82 (131)
++|..|-..+-++|..+|..|++= |+=..- .-.-...-++...-..|..+...|++=++.-.. .+|....
T Consensus 46 ~eE~~HA~~l~~~i~~~gg~~~~~-~~~~~~-------~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~ 115 (156)
T cd01055 46 QEEREHAMKFFDYLNDRGGRVELP-AIEAPP-------SEFESLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATF 115 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCCeeCC-CCCCCC-------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHH
Confidence 689999999999999999999862 210000 000112345666677888899999887765432 2567777
Q ss_pred HHHHHHHHHHHhHHHh
Q psy6686 83 DVIHKFRDEEQEHHDT 98 (131)
Q Consensus 83 ~~i~~~r~dE~~H~d~ 98 (131)
+.++.|-+||.+|.+.
T Consensus 116 ~~l~~~l~~q~e~~~~ 131 (156)
T cd01055 116 NFLQWFVKEQVEEEAL 131 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999754
No 25
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=93.20 E-value=0.58 Score=35.76 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh----HhCCCCCChhHHHHH
Q psy6686 60 IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG----LEHGAEQAPFYKLMT 114 (131)
Q Consensus 60 V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A----~~~ga~~~p~~~~~~ 114 (131)
-..=|+-|+..+ +++.++..|++|.++|.+|.+.= .+.|+.++.+.++|.
T Consensus 15 A~~IY~gQ~~~~-----~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~ 68 (165)
T cd01042 15 AVRIYRGQLAVA-----RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWY 68 (165)
T ss_pred HHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 345599999877 34788999999999999998765 557888865555554
No 26
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=91.26 E-value=1.3 Score=34.01 Aligned_cols=56 Identities=23% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh----HhCCCCCChhHHHHH
Q psy6686 55 AVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG----LEHGAEQAPFYKLMT 114 (131)
Q Consensus 55 avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A----~~~ga~~~p~~~~~~ 114 (131)
|=|.--..=|+-|+..+.. ++.++..|++|.++|..|...= .+.+..++.+.++|.
T Consensus 12 AGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~ 71 (172)
T PF03232_consen 12 AGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWY 71 (172)
T ss_pred HHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHH
Confidence 3344445569999988843 5778888999999999998764 456778865555555
No 27
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=90.69 E-value=6.8 Score=31.53 Aligned_cols=95 Identities=25% Similarity=0.237 Sum_probs=59.6
Q ss_pred hHHHHHH---HHHHHHHHhcCCCCccchhHHHHHH-HHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC-C-Ch
Q psy6686 3 DQEKAHK---AKFEELIRKYRVRPTALLPFWNVAG-FVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS-D-PA 76 (131)
Q Consensus 3 ~~E~~Hl---~~f~~~l~~~~~RpS~L~PlW~~~g-f~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~-~-~~ 76 (131)
.||..|- ..+++.|.+.|.. +.|+..... ...+.+.-..+.+.-+|+|+|.|..=. =+-+.+=.=+. . ..
T Consensus 68 gQEA~H~r~H~~~n~~l~~~G~~---~~~~~~~~~~~~~~~l~~~~~~~~~La~taalEH~TA-~la~~~L~~~~~~~~~ 143 (253)
T PF10118_consen 68 GQEAMHSREHRKFNEALEAQGYD---VRPFLEKMEKLFLKFLEKRLSLKFQLAYTAALEHFTA-VLAEWLLNNPELLFAG 143 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHH-HHHHHHhcChhhhhcc
Confidence 3676664 4577888888765 556443333 334455556999999999999984211 11122200000 1 22
Q ss_pred hcHHHHHHHHHHHHHHHhHHHhhHh
Q psy6686 77 ANRELMDVIHKFRDEEQEHHDTGLE 101 (131)
Q Consensus 77 ~~~~l~~~i~~~r~dE~~H~d~A~~ 101 (131)
.|+.+++.+.==-.||.||+..|-+
T Consensus 144 adp~~~~Lw~WHa~EE~EHksVAfD 168 (253)
T PF10118_consen 144 ADPEMRDLWRWHAAEEVEHKSVAFD 168 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777877788888999999999954
No 28
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=90.54 E-value=5.4 Score=29.21 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHH---HhhhcC---chhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcH
Q psy6686 6 KAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGA---GSALLG---PKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 79 (131)
Q Consensus 6 ~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa---~tal~G---~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~ 79 (131)
..|..-+...+..+|..|---..+ .|.+-.+ +.+++| +.+++.=.+-.|+.+.+-|++=|..- . -.+
T Consensus 43 ~~~~~eL~~~v~~lGg~p~~~gs~---~g~lhr~w~~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~-~---l~~ 115 (139)
T TIGR02284 43 SAIVSELQQVVASLGGKPEDHGSM---VGSLHQFWGKIRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQ-D---TPA 115 (139)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcH---HHHHHHHHHHHHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcC-C---CCh
Confidence 467778888999999888642222 2222222 335666 78888888889999999999988652 1 245
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy6686 80 ELMDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 80 ~l~~~i~~~r~dE~~H~d~ 98 (131)
+++++|++.+.++..|+|.
T Consensus 116 ~~r~~l~~q~~~i~~~~d~ 134 (139)
T TIGR02284 116 AARDVALRQYPGVRACHDV 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777799999999999885
No 29
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=89.52 E-value=4.2 Score=30.06 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccch---hHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 79 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~ 79 (131)
++|..|-..|-+++..+|.+|.+-. |. ..-.-+..-++...-+.|..|...|++=++ +... ++|.
T Consensus 48 ~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~----------~~~~~~~~e~l~~al~~E~~vt~~~~~l~~-~A~~-~~D~ 115 (161)
T cd01056 48 DEEREHAEKLIKYQNKRGGRVVLQDIKKPE----------KDEWGSGLEALELALDLEKLVNQSLLDLHK-LASE-HNDP 115 (161)
T ss_pred HHHHHHHHHHHHHHHHcCCeeecCCCCCCC----------CcccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhH-cCCH
Confidence 6899999999999999999998843 21 012224556778888899999999999664 4332 2467
Q ss_pred HHHHHHHH-HHHHHHhHHHhh
Q psy6686 80 ELMDVIHK-FRDEEQEHHDTG 99 (131)
Q Consensus 80 ~l~~~i~~-~r~dE~~H~d~A 99 (131)
...+.|+. |-+|+.+|.+..
T Consensus 116 ~t~~fl~~~fl~eQ~e~~~~~ 136 (161)
T cd01056 116 HLADFLESEFLEEQVESIKKL 136 (161)
T ss_pred hHHHHHHHHhhHHHHHHHHHH
Confidence 77777997 999999987664
No 30
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=89.16 E-value=3.9 Score=29.13 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHh-hhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHH
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGS-ALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRE 80 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~t-al~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~ 80 (131)
.++|.+|...+.+||..+|+.|..-..-+---+. +.-.. +-...+-.+....+.|+.+..-|++-++.-.+ .+|..
T Consensus 40 ~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~-l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~--~~D~~ 116 (139)
T cd01043 40 YDELREAIDEIAERIRALGGKPLGTLKEYAELST-IKEEPAGVLSAKEMVAELLEDYETLIEELREAIELADE--AGDPA 116 (139)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHH
Confidence 3689999999999999999999875433332222 11112 33344556777888888999999999876542 24566
Q ss_pred HHHHHHHHHHHHHhHH
Q psy6686 81 LMDVIHKFRDEEQEHH 96 (131)
Q Consensus 81 l~~~i~~~r~dE~~H~ 96 (131)
..+.+..+..++.+|.
T Consensus 117 t~~ll~~il~~~ek~~ 132 (139)
T cd01043 117 TADLLTEIIRELEKQA 132 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667999888888775
No 31
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=88.70 E-value=3.5 Score=33.52 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccc---hhHHHHHHHHHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHHHHHhcCCChh
Q psy6686 2 WDQEKAHKAKFEELIRKYRVRPTAL---LPFWNVAGFVLGAGSALLGPKGAMA-CTVAVESVIVDHYNEQLRALMSDPAA 77 (131)
Q Consensus 2 ~~~E~~Hl~~f~~~l~~~~~RpS~L---~PlW~~~gf~LGa~tal~G~~~~~a-~t~avE~~V~~Hy~~ql~~L~~~~~~ 77 (131)
..+|..|...++++|.++|++-.=+ +-||..+--.-. .++.+=+.+- +.+|--=-+...+.+-++.. +
T Consensus 108 a~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t~~---dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~-----g 179 (253)
T PF04305_consen 108 ADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQTAH---DLLARMALVPRVLEARGLDVTPFIIEKFRSA-----G 179 (253)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHhcc---CHHHHHHHHHHHHHhhCCCCCHHHHHHHHHC-----C
Confidence 3689999999999999999886543 445554322110 1221111111 11111111223333333333 4
Q ss_pred cHHHHHHHHHHHHHHHhHHHhh
Q psy6686 78 NRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 78 ~~~l~~~i~~~r~dE~~H~d~A 99 (131)
|.+..++++.+..||+.|-..+
T Consensus 180 D~~sa~iL~~I~~DEi~HV~~G 201 (253)
T PF04305_consen 180 DEESAAILEIILRDEIGHVAIG 201 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777999999999998877
No 32
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=86.66 E-value=4.2 Score=27.61 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCc----cchhHHHHHHHHHH-HHh--hhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6686 4 QEKAHKAKFEELIRKYRVRPT----ALLPFWNVAGFVLG-AGS--ALLGPKGAMACTVAVESVIVDHYNEQLRALMS 73 (131)
Q Consensus 4 ~E~~Hl~~f~~~l~~~~~RpS----~L~PlW~~~gf~LG-a~t--al~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~ 73 (131)
.|..|-..|++.|...|+-+. .-.+.|....+.=. ... .--....++|+..++|.++-..|...++-|..
T Consensus 14 ~~~~H~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r 90 (106)
T PF14518_consen 14 PERSHPELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRR 90 (106)
T ss_dssp GGG-HHHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 356899999999999998765 22233332222111 111 12344788999999999999999887776643
No 33
>PF13668 Ferritin_2: Ferritin-like domain
Probab=86.30 E-value=6.5 Score=27.90 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCC---ChhcHHHHHHHHHHHHHHHhHHHhhHhC--CCCC
Q psy6686 45 GPKGAMACTVAVESVIVDHYNEQLRALMSD---PAANRELMDVIHKFRDEEQEHHDTGLEH--GAEQ 106 (131)
Q Consensus 45 G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~---~~~~~~l~~~i~~~r~dE~~H~d~A~~~--ga~~ 106 (131)
||..++-+-...|..-.+-|+.-+.....+ ...+..+++.+++|+++|..|.+.-... |+.+
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~~~ 67 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALEGGRP 67 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 566778888889999999999999754211 1136778888999999999999887664 4443
No 34
>PRK10304 ferritin; Provisional
Probab=86.18 E-value=8 Score=29.18 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccch---hHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 79 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~ 79 (131)
.+|.+|-..|-++|..+|.+|.+-. |.= -.-.-.-.+-+.-+-|..|...|++=.+.=.. .+|.
T Consensus 48 ~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~-----------~~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~--~~D~ 114 (165)
T PRK10304 48 QEEMTHMQRLFDYLTDTGNLPRINTVESPFA-----------EYSSLDELFQETYKHEQLITQKINELAHAAMT--NQDY 114 (165)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc-----------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCH
Confidence 6899999999999999999998643 321 11123456777888899999999886643322 2566
Q ss_pred HHHHHHHHHHHH---HHhHHHhh
Q psy6686 80 ELMDVIHKFRDE---EQEHHDTG 99 (131)
Q Consensus 80 ~l~~~i~~~r~d---E~~H~d~A 99 (131)
..++-|..|-+| |..|.+.=
T Consensus 115 ~t~~fl~~fl~EQveEe~~~~~l 137 (165)
T PRK10304 115 PTFNFLQWYVSEQHEEEKLFKSI 137 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 666668888888 77776654
No 35
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=82.96 E-value=11 Score=36.19 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCccchh-HHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcH
Q psy6686 1 MWDQEKAHKAKFEELIRKYRVRPTALLP-FWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 79 (131)
Q Consensus 1 m~~~E~~Hl~~f~~~l~~~~~RpS~L~P-lW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~ 79 (131)
|.++|..|..+|.+++.+. -|..-.- .|....+.-+.......+.-++-.--..|+.--+-|.+=....++ ..
T Consensus 898 LA~eE~~H~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d----~e 971 (1006)
T PRK12775 898 FAGMEQEHMATLARRYHAA--APSPTEGFKIERAAIMAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAETPD----GS 971 (1006)
T ss_pred HHHHHHHHHHHHHHHHhhc--cCCcccccccchhhhhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC----hH
Confidence 4689999999999998642 1210000 021122222322233445567778888999999999887765422 12
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy6686 80 ELMDVIHKFRDEEQEHHDT 98 (131)
Q Consensus 80 ~l~~~i~~~r~dE~~H~d~ 98 (131)
..+.++.+|-++|.+|...
T Consensus 972 ~~k~l~~~LA~EEk~Hl~~ 990 (1006)
T PRK12775 972 VERQLYKELAAEEREHVAL 990 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566699999999999765
No 36
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=81.63 E-value=8.7 Score=26.15 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhhHh
Q psy6686 52 CTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 101 (131)
Q Consensus 52 ~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A~~ 101 (131)
.--+.|..-...|........ ++.+++.++++.+||..|.+.-..
T Consensus 5 ~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~la~eE~~H~~~l~~ 49 (139)
T cd01045 5 LAIKMEEEAAEFYLELAEKAK-----DPELKKLFEELAEEEKEHAERLEE 49 (139)
T ss_pred HHHHHHHHHHHHHHHHHhHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667888888988887662 357888899999999999987643
No 37
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=81.06 E-value=20 Score=28.95 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHhcC----CCCccchhHHHHHHHHHHHHhhhcCc----hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6686 3 DQEKAHKAKFEELIRKYR----VRPTALLPFWNVAGFVLGAGSALLGP----KGAMACTVAVESVIVDHYNEQLRALMSD 74 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~----~RpS~L~PlW~~~gf~LGa~tal~G~----~~~~a~t~avE~~V~~Hy~~ql~~L~~~ 74 (131)
.+|..|-.-|.+.+.+.| ..| .|--+.....+..+...++. -..++++-..|+.|+ +|+..+. .+
T Consensus 123 ~DE~rH~~mf~~~~~~~~~~~~l~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~i~-~~~~~~~---~D 195 (304)
T PF11583_consen 123 ADEARHSLMFARAINRTGRRRGLAP---LPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEIID-AYQREIA---RD 195 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHSBH-HHHHHHH---T-
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccc---CCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HHHHHhh---cC
Confidence 479999999999888776 222 22223333333333344443 345666666777655 6766653 23
Q ss_pred ChhcHHHHHHHHHHHHHHHhHHHhhHh
Q psy6686 75 PAANRELMDVIHKFRDEEQEHHDTGLE 101 (131)
Q Consensus 75 ~~~~~~l~~~i~~~r~dE~~H~d~A~~ 101 (131)
+.-.+-++++.+--..||..|..-|.+
T Consensus 196 ~~iqP~~r~v~~iH~~DEaRHi~f~~~ 222 (304)
T PF11583_consen 196 ETIQPLVRQVMRIHVRDEARHIAFARE 222 (304)
T ss_dssp SSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 324567777788888999999888854
No 38
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.15 E-value=22 Score=28.28 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELM 82 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~ 82 (131)
.+|.+|+.-+....++.| -|-+.||+||++ +++|=++--.--..==+.-+.-|+.=+..+..+ .++..
T Consensus 5 ~~E~qql~~ik~wwkeNG--------k~li~gviLg~~-~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak---~~~~~ 72 (207)
T COG2976 5 LEEQQQLEAIKDWWKENG--------KALIVGVILGLG-GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAK---KPKSI 72 (207)
T ss_pred hhHHHHHHHHHHHHHHCC--------chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhH
Confidence 589999999999999987 678889999865 677766555444443345667888888877653 34556
Q ss_pred HHHHHHHHHH
Q psy6686 83 DVIHKFRDEE 92 (131)
Q Consensus 83 ~~i~~~r~dE 92 (131)
..+++|.+.-
T Consensus 73 ~~~ekf~~~n 82 (207)
T COG2976 73 AAAEKFVQAN 82 (207)
T ss_pred HHHHHHHhhc
Confidence 6677776654
No 39
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=72.78 E-value=22 Score=27.17 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=41.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhhH
Q psy6686 45 GPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGL 100 (131)
Q Consensus 45 G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A~ 100 (131)
|-.=+++.-...|..-.+-|.++....+ +.+++..+..+.+||..|.+...
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~~~-----~~~~rk~~~~la~eE~~H~~~f~ 74 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAERIE-----DEEIRKLFEDLADEEMRHLRKFE 74 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHhHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777889999999999987773 45788889999999999999885
No 40
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=71.83 E-value=15 Score=29.16 Aligned_cols=50 Identities=22% Similarity=0.144 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh----HhCCCCCChhHHHHH
Q psy6686 60 IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG----LEHGAEQAPFYKLMT 114 (131)
Q Consensus 60 V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A----~~~ga~~~p~~~~~~ 114 (131)
-..=|+.|...+. +++.+..|++|-|+|..|...- .+.+..++-+.++|.
T Consensus 56 A~~iY~GQ~~~~r-----~~~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W~ 109 (204)
T COG2941 56 AQAIYQGQAAVAR-----SPEPRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLWY 109 (204)
T ss_pred HHHHHhhHHHHHc-----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH
Confidence 3455888887773 3455667999999999998766 567777744444443
No 41
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=70.81 E-value=4 Score=30.33 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=34.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhH
Q psy6686 44 LGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEH 95 (131)
Q Consensus 44 ~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H 95 (131)
.+.+++++|-.++|..|.+||++- .|+ ...+.++|++|=-|....
T Consensus 21 aS~~aN~~Ck~aIE~aI~~~~~~~--~L~-----~~a~~~vie~fG~eR~~~ 65 (133)
T PF12960_consen 21 ASRKANIACKEAIEQAIREHFDGN--RLD-----PDAVKEVIEKFGYERVAY 65 (133)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCC--cCC-----HHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999986 563 245566688887766443
No 42
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=70.51 E-value=35 Score=24.12 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELM 82 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~ 82 (131)
++|..|-..|.+.+.. ++ -..+-.+-....-|..+.+.|++=++.-. .+++....
T Consensus 44 ~eE~~HA~~~~~~l~~---------------------i~--~~~~~~le~a~~~E~~~~~~~~~~~~~A~--~egd~~~~ 98 (123)
T cd01046 44 MEEAEHAARFAELLGK---------------------VS--EDTKENLEMMLEGEAGANEGKKDAATEAK--AEGLDEAH 98 (123)
T ss_pred HHHHHHHHHHHHHHhc---------------------Cc--ccHHHHHHHHHHhHHHHHHhHHHHHHHHH--HcCCHHHH
Confidence 6789999888885521 11 12345566677788888888876555442 23677888
Q ss_pred HHHHHHHHHHHhHHHh
Q psy6686 83 DVIHKFRDEEQEHHDT 98 (131)
Q Consensus 83 ~~i~~~r~dE~~H~d~ 98 (131)
..++.+.++|.+|.+.
T Consensus 99 ~~~~~~~~~E~~H~~~ 114 (123)
T cd01046 99 DFFHEAAKDEARHGKM 114 (123)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999999764
No 43
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=69.38 E-value=3.3 Score=31.24 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q psy6686 24 TALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQL 68 (131)
Q Consensus 24 S~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql 68 (131)
|+++|+-.++.|.+|-+--+---.--...-+.+.+||.+.|++++
T Consensus 74 sllsPllsLM~fI~gtL~~lrrvsgcisik~w~~~q~~~q~~~~~ 118 (164)
T PF10624_consen 74 SLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQSQVNEQYDEDL 118 (164)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHHHHHhhhcCccc
Confidence 789999999999999765443222222334566677777777766
No 44
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=68.19 E-value=11 Score=30.58 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCChhcHHHH-HHHHHHHHHHHhHHHhh
Q psy6686 60 IVDHYNEQLRALMSDPAANRELM-DVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 60 V~~Hy~~ql~~L~~~~~~~~~l~-~~i~~~r~dE~~H~d~A 99 (131)
+.+||..|-+-|.. ..|+++| ++|..|++||.|--+.|
T Consensus 133 LLRhLRHHSNLLAn--IgdP~VreqVLsAMqEeeeEEe~DA 171 (238)
T PF02084_consen 133 LLRHLRHHSNLLAN--IGDPEVREQVLSAMQEEEEEEEQDA 171 (238)
T ss_pred HHHHHHHHHHHHhh--cCCHHHHHHHHHHHhhhHHHHHHHH
Confidence 56899888876643 2567777 57889998877665555
No 45
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=68.14 E-value=28 Score=23.59 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh
Q psy6686 55 AVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 55 avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A 99 (131)
..|..-...|...-+....+ . ++++.+++++.+||.+|.+.=
T Consensus 8 ~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~ 49 (137)
T PF02915_consen 8 KMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFL 49 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHH
Confidence 34555567888877777442 2 789999999999999998764
No 46
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=55.94 E-value=47 Score=23.29 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh
Q psy6686 56 VESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 56 vE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A 99 (131)
.|..-...|...-... .++.++.++..+.++|.+|.+.=
T Consensus 9 ~E~~~~~~Y~~la~~~-----~~~~~k~~f~~lA~~E~~H~~~~ 47 (125)
T cd01044 9 DEITEAAIYRKLAKRE-----KDPENREILLKLAEDERRHAEFW 47 (125)
T ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666555433 35668888999999999999873
No 47
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=50.77 E-value=63 Score=20.55 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhhH
Q psy6686 55 AVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGL 100 (131)
Q Consensus 55 avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A~ 100 (131)
..|..-..-|..+....+ ++.++..+.++-.||..|.+.=.
T Consensus 8 ~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~ 48 (130)
T cd00657 8 AGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALA 48 (130)
T ss_pred HHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888887763 46778889999999999988653
No 48
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.42 E-value=1e+02 Score=23.10 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHH---HHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh
Q psy6686 31 NVAGFVLGAGSALLGPKGAMACTVAVESV---IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 31 ~~~gf~LGa~tal~G~~~~~a~t~avE~~---V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A 99 (131)
-+.|.++|++.+.++++..=- -..|+.. +-.-+++|=++|...-..+.+|.+.|.+=-.+=.+|....
T Consensus 15 LvvGi~IG~li~Rlt~~~~k~-q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~s 85 (138)
T COG3105 15 LVVGIIIGALIARLTNRKLKQ-QQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAKS 85 (138)
T ss_pred HHHHHHHHHHHHHHcchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777888888888765432 1122222 3345566666665544467778666666666666776554
No 49
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=50.15 E-value=1e+02 Score=22.68 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccch---hHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 79 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~ 79 (131)
++|..|-..+-++|..+|.+|.+-. |- ...| -...-++-..-+.|..|.+.|++-.+.-.. .+|.
T Consensus 48 ~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~--~~~~--------~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~--~~D~ 115 (160)
T cd00904 48 QEEREHAEKFYKYQNERGGRVELQDIEKPP--SDEW--------GGTLDAMEAALKLEKFVNQALLDLHELASE--EKDP 115 (160)
T ss_pred HHHHHHHHHHHHHHHHCCCccccCcCCCCc--cccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCH
Confidence 6899999999999999999998643 21 0001 122356777888899999998876653322 2466
Q ss_pred HHHHHHHH-HHHHHHhH
Q psy6686 80 ELMDVIHK-FRDEEQEH 95 (131)
Q Consensus 80 ~l~~~i~~-~r~dE~~H 95 (131)
...+-|+. |-+|-.+-
T Consensus 116 ~t~~fl~~~fi~eQ~ee 132 (160)
T cd00904 116 HLCDFLESHFLDEQVKE 132 (160)
T ss_pred HHHHHhhchhhHHHHHH
Confidence 66666777 66665544
No 50
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=50.10 E-value=1e+02 Score=22.80 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh----HhCCCCCChhH-HHHHHHHHHHHH
Q psy6686 54 VAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG----LEHGAEQAPFY-KLMTDVIKVGCK 122 (131)
Q Consensus 54 ~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A----~~~ga~~~p~~-~~~~~~ik~~~~ 122 (131)
-+.|.+..+=+..++... .+++|++.|++-+++-.+|...= ...|..+.... ..|..+++-+-.
T Consensus 14 y~aE~q~~~~l~~~~~~a-----~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~ 82 (159)
T PF05974_consen 14 YSAEKQLLKALPKLAEAA-----SSPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQE 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHH------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHH
Confidence 456777777777777766 45899999999999999997654 34788776666 777777765543
No 51
>KOG4061|consensus
Probab=50.10 E-value=25 Score=27.88 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=45.8
Q ss_pred cCchhHHHHHHHHHHHH----------HHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh----HhCCCCC---
Q psy6686 44 LGPKGAMACTVAVESVI----------VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG----LEHGAEQ--- 106 (131)
Q Consensus 44 ~G~~~~~a~t~avE~~V----------~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A----~~~ga~~--- 106 (131)
.|.+.+-.--+.+++.| +.=|..|+.-|... .+..+|+.|=|+|.+|+++= +.+.-.+
T Consensus 37 ~g~~l~~~~~a~~d~iIRVDhAGElGAdrIYaGQ~avL~~~-----~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l 111 (217)
T KOG4061|consen 37 RGTHLSASRQALLDRIIRVDHAGELGADRIYAGQMAVLQGT-----SVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVL 111 (217)
T ss_pred CCcccCchhHHHHHHhheeccccccccchhhhchhhhhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHccCCchhh
Confidence 44444445555666665 45577777777442 26677999999999999874 4555555
Q ss_pred ChhHHHHHHHHHHH
Q psy6686 107 APFYKLMTDVIKVG 120 (131)
Q Consensus 107 ~p~~~~~~~~ik~~ 120 (131)
.|++.+...+..+|
T Consensus 112 ~P~w~vagfalGaG 125 (217)
T KOG4061|consen 112 TPLWNVAGFALGAG 125 (217)
T ss_pred hhHHHHHHHHhccc
Confidence 55555555544444
No 52
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=49.82 E-value=17 Score=25.66 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.3
Q ss_pred hcHHHHHHHHHHHHHHHhHHHhhHh
Q psy6686 77 ANRELMDVIHKFRDEEQEHHDTGLE 101 (131)
Q Consensus 77 ~~~~l~~~i~~~r~dE~~H~d~A~~ 101 (131)
+|+.++.+++.-||||.+|.-.-++
T Consensus 44 KD~~~r~ImehnrdeE~eHa~mlLE 68 (103)
T COG3461 44 KDEDLRAIMEHNRDEEKEHAAMLLE 68 (103)
T ss_pred ccHhHHHHHHHcccHHHHHHHHHHH
Confidence 6788999999999999999766544
No 53
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=48.85 E-value=41 Score=28.14 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6686 30 WNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD 74 (131)
Q Consensus 30 W~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~ 74 (131)
-.+.|.+||+.+|.-| ..+--||.+....+..+.++|-..
T Consensus 130 LsaaG~GlgaaagvT~-----i~t~I~e~~~~~~~~~~a~~l~~~ 169 (313)
T PF05461_consen 130 LSAAGIGLGAAAGVTS-----ISTSIVEHVSNKSARKEASELIST 169 (313)
T ss_pred HHHhhhHHHHHhhhhH-----HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 5555555665555544 345567888888888888777653
No 54
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=43.38 E-value=17 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHhhhcCchh
Q psy6686 26 LLPFWNVAGFVLGAGSALLGPKG 48 (131)
Q Consensus 26 L~PlW~~~gf~LGa~tal~G~~~ 48 (131)
|.||.-+.|+++|+.+..+.+..
T Consensus 6 l~PL~~~vg~a~~~a~~~~~r~l 28 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFYLYRLL 28 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998887776544
No 55
>PF12939 DUF3837: Domain of unknown function (DUF3837); InterPro: IPR024212 This entry represents a small, compact all-alpha helical domain of unknown function. This domain is currently only found in Clostridiales species.
Probab=42.25 E-value=17 Score=25.90 Aligned_cols=70 Identities=7% Similarity=0.148 Sum_probs=43.2
Q ss_pred CCCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHH
Q psy6686 21 VRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQ 93 (131)
Q Consensus 21 ~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~ 93 (131)
..||+|..- |=..+++|.++.++|-.--=+= ..=...-+-++.++....+.|+.++.|...|.-++.|+.
T Consensus 16 ~e~a~lt~n-yE~yyA~G~~~k~~g~~~pe~~--~~~~eLk~~l~~~~~~~~p~de~~k~l~~lL~~y~~dd~ 85 (102)
T PF12939_consen 16 FEPAPLTGN-YEFYYAAGLICKAMGLPIPEGD--ETPFELKEKLQKDIDKISPEDEREKKLISLLKDYIPDDT 85 (102)
T ss_pred cCCCcccch-HHHHHHHHHHHHhcCCCCcccc--cCHHHHHHHHHHhccCCCCchHHHHHHHHHHHhcCCCcc
Confidence 347776654 4456888888888873322111 111234455566666665556677888888999886654
No 56
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=41.42 E-value=19 Score=24.63 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCch---hHHHHHHHHHHHHHHHHHHHHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPK---GAMACTVAVESVIVDHYNEQLR 69 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~---~~~a~t~avE~~V~~Hy~~ql~ 69 (131)
.+-..|...+.+++.++|..|.-...++....-+.-.+.+.++.+ +.+.=....|+.+.+-|++=|.
T Consensus 41 ~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~~~~~~d~~aiL~~~~~gE~~~~~~y~~aL~ 110 (111)
T PF09537_consen 41 QERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKSALGGDDDEAILEECERGEDMALEAYEDALE 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHHS-----H-----------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhhhhhhcccccc
Confidence 345678889999999999999988777766665555454444443 4677677777777777776553
No 57
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.94 E-value=1.5e+02 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhcCchh
Q psy6686 29 FWNVAGFVLGAGSALLGPKG 48 (131)
Q Consensus 29 lW~~~gf~LGa~tal~G~~~ 48 (131)
++-+.|+++|++.+.++.+-
T Consensus 4 i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 46677778887776666554
No 58
>PHA00022 VII minor coat protein
Probab=36.41 E-value=9.5 Score=20.98 Aligned_cols=11 Identities=45% Similarity=0.450 Sum_probs=8.5
Q ss_pred HHHHHHHHHhh
Q psy6686 32 VAGFVLGAGSA 42 (131)
Q Consensus 32 ~~gf~LGa~ta 42 (131)
+.+|+||++||
T Consensus 15 Vi~FgLG~It~ 25 (28)
T PHA00022 15 VICFGLGAITG 25 (28)
T ss_pred HHhhccceeec
Confidence 56788888876
No 59
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=35.26 E-value=1e+02 Score=19.92 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHhhhc----------CchhHHHHHHHHHHHHHHHHH
Q psy6686 25 ALLPFWNVAGFVLGAGSALL----------GPKGAMACTVAVESVIVDHYN 65 (131)
Q Consensus 25 ~L~PlW~~~gf~LGa~tal~----------G~~~~~a~t~avE~~V~~Hy~ 65 (131)
+++.+|++.+|..+...+.. .++|.+.-+..+.+.|.++|+
T Consensus 10 ~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e 60 (117)
T cd07375 10 FLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALE 60 (117)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHH
Confidence 78999999999766542221 135555555555556666654
No 60
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=34.90 E-value=37 Score=26.99 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFW 30 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW 30 (131)
-||.-|+.+..++|...|.+|.+-.|-|
T Consensus 39 ~eEMlHl~l~~Nll~alGg~P~l~~~~~ 66 (227)
T PF12902_consen 39 IEEMLHLSLAANLLNALGGSPRLTSPDF 66 (227)
T ss_dssp HHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccC
Confidence 5899999999999999999999987766
No 61
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.77 E-value=70 Score=30.85 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=44.8
Q ss_pred ccchhHHHHHHHHHHHHhhhcC-------------chhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHH
Q psy6686 24 TALLPFWNVAGFVLGAGSALLG-------------PKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRD 90 (131)
Q Consensus 24 S~L~PlW~~~gf~LGa~tal~G-------------~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~ 90 (131)
..++|+|++..|++|-+...=. |+|+++.+..+=..|.++|++-= -..+...|..|..
T Consensus 650 ~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~---------f~~v~~~l~~F~~ 720 (933)
T COG0060 650 EVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYD---------FHKVVRALMNFVS 720 (933)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHH
Confidence 4579999999999998654322 78888888888888888887531 2334455677776
Q ss_pred HHHhH
Q psy6686 91 EEQEH 95 (131)
Q Consensus 91 dE~~H 95 (131)
+|+..
T Consensus 721 ~dLS~ 725 (933)
T COG0060 721 EDLSN 725 (933)
T ss_pred hhhhH
Confidence 66554
No 62
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=34.57 E-value=33 Score=21.34 Aligned_cols=19 Identities=42% Similarity=0.691 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhcCchh
Q psy6686 30 WNVAGFVLGAGSALLGPKG 48 (131)
Q Consensus 30 W~~~gf~LGa~tal~G~~~ 48 (131)
|...|++-|+++.+.|++.
T Consensus 23 ~~~~G~~~G~~~~~~~~~~ 41 (62)
T PF02830_consen 23 WFTAGYLAGFFSALFGKEV 41 (62)
T ss_dssp HHHHHHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHHHHhCCce
Confidence 5789999999999999874
No 63
>PF12713 DUF3806: Domain of unknown function (DUF3806); InterPro: IPR024266 This entry represents a domain found at the C terminus of a family of bacterial proteins, whose function is unknown. In two related Bacteroides species the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7, whose C-terminal domain is a phage integrase.; PDB: 3HLZ_A.
Probab=34.31 E-value=77 Score=21.30 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCccchhHHHHHHHHHHH-Hhhhc
Q psy6686 9 KAKFEELIRKYRVRPTALLPFWNVAGFVLGA-GSALL 44 (131)
Q Consensus 9 l~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa-~tal~ 44 (131)
+..+++.+.+..+.|.=..+ |.+.|++||- ++.-+
T Consensus 3 l~~lq~~id~~~~~~~d~~~-~~alGialG~~L~~e~ 38 (87)
T PF12713_consen 3 LEKLQRVIDSGEISPDDKDE-WQALGIALGDLLANEV 38 (87)
T ss_dssp HHHHHHHHHTT-S-TT-HHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcHHH-HHHHHHHHHHHHHhhc
Confidence 46788888888888888888 9999999994 34433
No 64
>PRK11677 hypothetical protein; Provisional
Probab=34.08 E-value=1.5e+02 Score=21.88 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhhhcCch
Q psy6686 28 PFWNVAGFVLGAGSALLGPK 47 (131)
Q Consensus 28 PlW~~~gf~LGa~tal~G~~ 47 (131)
++.-+.||++|++.|.+.-+
T Consensus 3 W~~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556677777665555444
No 65
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=31.19 E-value=1.6e+02 Score=19.39 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHh------------cCCCCccchhHHHHHHHHHHHHhhhcC
Q psy6686 3 DQEKAHKAKFEELIRK------------YRVRPTALLPFWNVAGFVLGAGSALLG 45 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~------------~~~RpS~L~PlW~~~gf~LGa~tal~G 45 (131)
++|+.=|+..|+.|.. .+.||+.-.++|.+..+++|.+.=..|
T Consensus 5 e~E~r~L~eiEr~L~~~DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G 59 (82)
T PF11239_consen 5 EHEQRRLEEIERQLRADDPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAG 59 (82)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777743 344566666678888888886443333
No 66
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=30.24 E-value=2e+02 Score=23.02 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhh
Q psy6686 53 TVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 53 t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A 99 (131)
.-+.|+...+-.++-+.++ +|++|++.|+-|--.|..|...-
T Consensus 36 fP~GE~ffi~svr~~~~~i-----~D~~L~~~i~~FIgQEA~H~r~H 77 (253)
T PF10118_consen 36 FPEGERFFIRSVRRARPQI-----KDPELREEIKGFIGQEAMHSREH 77 (253)
T ss_pred hhhhHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888877777777777 47899999999999999997655
No 67
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=29.18 E-value=55 Score=19.81 Aligned_cols=18 Identities=22% Similarity=0.713 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHhhhc
Q psy6686 27 LPFWNVAGFVLGAGSALL 44 (131)
Q Consensus 27 ~PlW~~~gf~LGa~tal~ 44 (131)
.|.|-+.+..+|+.+|..
T Consensus 31 ~p~~~~~g~llG~~~g~~ 48 (55)
T PF09527_consen 31 SPWFTLIGLLLGIAAGFY 48 (55)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 599999999999988763
No 68
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=29.11 E-value=1.9e+02 Score=27.96 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhhHh
Q psy6686 49 AMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 101 (131)
Q Consensus 49 ~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A~~ 101 (131)
++.+-...|.--.+.|.+.-.+. .++++++.+.+|-++|.+|.+.-.+
T Consensus 864 il~~Ai~mE~~g~~FY~~~A~~a-----~~~~~K~lF~~LA~eE~~H~~~l~~ 911 (1006)
T PRK12775 864 AIRTAFEIELGGMAFYARAAKET-----SDPVLKELFLKFAGMEQEHMATLAR 911 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888899998777664 3578888899999999999976544
No 69
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.80 E-value=54 Score=20.34 Aligned_cols=20 Identities=30% Similarity=0.301 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHHHHHhhhc
Q psy6686 25 ALLPFWNVAGFVLGAGSALL 44 (131)
Q Consensus 25 ~L~PlW~~~gf~LGa~tal~ 44 (131)
+=..+|-+++|++|++.|.+
T Consensus 18 ~pl~l~il~~f~~G~llg~l 37 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWL 37 (68)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 33456778888888876654
No 70
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=28.58 E-value=1.1e+02 Score=22.40 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhhHhCCC
Q psy6686 59 VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGA 104 (131)
Q Consensus 59 ~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A~~~ga 104 (131)
.|..|+++.|+++..++.=...+..+++-|-++|+...+.----|+
T Consensus 17 ~v~~~l~~ylkel~~d~tf~~Kl~~Il~mFl~~eid~e~~y~l~~~ 62 (122)
T PF06648_consen 17 FVNTHLKKYLKELERDETFLDKLIKILKMFLNDEIDVEDMYNLFGA 62 (122)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhCCCCHHHHHHHHhc
Confidence 5788888889888754433466788899999999888665544333
No 71
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=27.75 E-value=2.8e+02 Score=21.30 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-cchhHHHHHHHHHHHHhhhcCchh-----HHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q psy6686 4 QEKAHKAKFEELIRKYRVRPT-ALLPFWNVAGFVLGAGSALLGPKG-----AMACTVAVESVIVDHYNEQLRALMSDPAA 77 (131)
Q Consensus 4 ~E~~Hl~~f~~~l~~~~~RpS-~L~PlW~~~gf~LGa~tal~G~~~-----~~a~t~avE~~V~~Hy~~ql~~L~~~~~~ 77 (131)
+-..|....-+||.++++.|- -+.-||.++| --.+-+..++ .+....+-|+--.+-|.+-.+--...|..
T Consensus 61 E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISg----C~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~GkDpr 136 (172)
T COG2406 61 EDRKHFELIAPRIYELGGDLPRDMKKLHDISG----CKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTAGKDPR 136 (172)
T ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHhhcC----CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccccCCCcc
Confidence 335699999999999998764 4677888775 3455555544 35666677888888888766544444555
Q ss_pred cHHHHHHHHHHHHHHHhHHHhhHhC
Q psy6686 78 NRELMDVIHKFRDEEQEHHDTGLEH 102 (131)
Q Consensus 78 ~~~l~~~i~~~r~dE~~H~d~A~~~ 102 (131)
.-+| -+.+-.||.+|+.-=++.
T Consensus 137 TyeL---a~~IL~eEi~hr~~~~~l 158 (172)
T COG2406 137 TYEL---AEAILREEIEHRTWFLEL 158 (172)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHH
Confidence 5555 677788999998876664
No 72
>PHA02108 hypothetical protein
Probab=27.11 E-value=1e+02 Score=18.64 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhhcCc-hhHHHHHHHH
Q psy6686 29 FWNVAGFVLGAGSALLGP-KGAMACTVAV 56 (131)
Q Consensus 29 lW~~~gf~LGa~tal~G~-~~~~a~t~av 56 (131)
+=|++||+|=..- ..|+ -+.++|..||
T Consensus 10 igyiasf~lfy~m-y~g~ay~vlgca~av 37 (48)
T PHA02108 10 IGYIASFGLFYAM-YKGDAYFVLGCAAAV 37 (48)
T ss_pred hHHHHHHHHHHHH-HccchhhhhHhHHHH
Confidence 3466777663322 2333 3456777765
No 73
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.89 E-value=1.8e+02 Score=18.62 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhc
Q psy6686 31 NVAGFVLGAGSALL 44 (131)
Q Consensus 31 ~~~gf~LGa~tal~ 44 (131)
-+.|.++|+++|++
T Consensus 5 ~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 5 FLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666666
No 74
>PF14516 AAA_35: AAA-like domain
Probab=26.75 E-value=1.4e+02 Score=24.58 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHH
Q psy6686 12 FEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMA-CTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRD 90 (131)
Q Consensus 12 f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a-~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~ 90 (131)
+++.+.--|.+|=+.+-+.+...- .+.... ++.+. .....-|++||+.+...-.++++|+++++++-.
T Consensus 222 ~~~l~~~tgGhP~Lv~~~~~~l~~----------~~~~~~~l~~~a-~~~~~~~~~hL~~l~~~L~~~~~L~~~~~~il~ 290 (331)
T PF14516_consen 222 LEQLMDWTGGHPYLVQKACYLLVE----------EQITLEQLLEEA-ITDNGIYNDHLDRLLDRLQQNPELLEAYQQILF 290 (331)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----------ccCcHHHHHHHH-HHhcccHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 566666667777777766666544 111121 11111 111123444444443322246788888887755
No 75
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=26.73 E-value=2.4e+02 Score=20.16 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.2
Q ss_pred hcHHHHHHHHHHHHHHHhHHHhh
Q psy6686 77 ANRELMDVIHKFRDEEQEHHDTG 99 (131)
Q Consensus 77 ~~~~l~~~i~~~r~dE~~H~d~A 99 (131)
+++.+++.+.++..||.+|.+.=
T Consensus 45 ~~~~~k~~f~~lA~eE~~H~~~l 67 (154)
T cd07908 45 KYPEIAETFLGIAIVEMHHLEIL 67 (154)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999998764
No 76
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=26.60 E-value=1.6e+02 Score=21.02 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=32.0
Q ss_pred CCccchhHHHHHHHHH------HHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6686 22 RPTALLPFWNVAGFVL------GAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS 73 (131)
Q Consensus 22 RpS~L~PlW~~~gf~L------Ga~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~ 73 (131)
||..-.|=+|+.+.+. +.....+++...--....|=+.|.++|-+.+.++..
T Consensus 27 k~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~~evL~ 84 (125)
T PF12022_consen 27 KPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIASEVLT 84 (125)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554322 222455666666666666777788899998888765
No 77
>KOG2332|consensus
Probab=26.00 E-value=3.2e+02 Score=21.24 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHH--HHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHH
Q psy6686 3 DQEKAHKAKFEELIRKYRVRPTALLPFWNV--AGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRE 80 (131)
Q Consensus 3 ~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~--~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~ 80 (131)
++|.+|-..+-+....+|.|++ |.|++.- --|.-|+ -+|-|.-..|..|...+-+ |..|..+. .|+.
T Consensus 61 ~eereha~klm~~~n~rgg~i~-l~~i~~P~~~ew~~~l--------~ale~al~LEk~vn~sLl~-Lh~lA~~k-nD~h 129 (178)
T KOG2332|consen 61 QEEREHAEKLMKTQNMRGGRIE-LQDIKKPELDEWGKGL--------EALEAALHLEKNVNQSLLE-LHSLATKK-NDPH 129 (178)
T ss_pred hhhhhhHHHHHHHHHHhCCccc-cccccccccchhHhHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHhc-CChH
Confidence 5789999999999999999998 5665521 1111111 2367777889888888765 33444322 4677
Q ss_pred HHHHHHH
Q psy6686 81 LMDVIHK 87 (131)
Q Consensus 81 l~~~i~~ 87 (131)
|-+-|+.
T Consensus 130 L~dflE~ 136 (178)
T KOG2332|consen 130 LCDFLES 136 (178)
T ss_pred HHHHHHH
Confidence 7777774
No 78
>PF15119 APOC4: Apolipoprotein C4
Probab=25.35 E-value=1.3e+02 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy6686 54 VAVESVIVDHYNEQLRALMS 73 (131)
Q Consensus 54 ~avE~~V~~Hy~~ql~~L~~ 73 (131)
.++--++...|+|||+.|..
T Consensus 50 ~~~qGFmQTYYdDHLkDLgp 69 (99)
T PF15119_consen 50 SAFQGFMQTYYDDHLKDLGP 69 (99)
T ss_pred HHHHHHHHHHHHHHHhhcCH
Confidence 34555678899999999966
No 79
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=24.26 E-value=2.8e+02 Score=20.10 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhhHhCCCCCChhHHHHHHHHH
Q psy6686 62 DHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIK 118 (131)
Q Consensus 62 ~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A~~~ga~~~p~~~~~~~~ik 118 (131)
..+.+-|++||+ +.+.+ |.-..-++.-+.++|...|-...-++.-+..+.+
T Consensus 125 ~~l~~~l~~L~~---~~r~i---~~l~~~~~~s~~eIA~~lgis~~tV~~~l~ra~~ 175 (182)
T PRK12537 125 GKIHRCLEQLEP---ARRNC---ILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSLK 175 (182)
T ss_pred HHHHHHHHhCCH---HHHHH---HHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 456677777766 34444 6666789999999999999776666655554443
No 80
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=24.20 E-value=3.6e+02 Score=21.28 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHhCCCCC-ChhHHHHHHHHHHHHHHHHHHHh
Q psy6686 79 RELMDVIHKFRDEEQEHHDTGLEHGAEQ-APFYKLMTDVIKVGCKVAIGVAK 129 (131)
Q Consensus 79 ~~l~~~i~~~r~dE~~H~d~A~~~ga~~-~p~~~~~~~~ik~~~~~ai~la~ 129 (131)
.+....|+.||..|.-.--.+--.|... .-+-..++.+..+..++|+..+.
T Consensus 57 e~~~~~LR~~k~~e~lRIa~~dl~g~~~~~~v~~~LS~lAda~l~~a~~~a~ 108 (247)
T PF03710_consen 57 EEALDALRRFKRREMLRIALRDLLGLADLEEVTRELSDLADAVLEAALRFAW 108 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999977765555555332 22446667777777777777654
No 81
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=23.00 E-value=74 Score=22.90 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=27.7
Q ss_pred CccchhHHH--HHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q psy6686 23 PTALLPFWN--VAGFVLGAGSALLGPKGAMACTVAVESVIV 61 (131)
Q Consensus 23 pS~L~PlW~--~~gf~LGa~tal~G~~~~~a~t~avE~~V~ 61 (131)
||.=+-+-+ .+|+++|+++-+++.+...+|--+|=.++.
T Consensus 38 PCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l 78 (118)
T PF12597_consen 38 PCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFL 78 (118)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHH
Confidence 555555443 578899999999999777777666666554
No 82
>COG3771 Predicted membrane protein [Function unknown]
Probab=22.63 E-value=37 Score=23.77 Aligned_cols=38 Identities=32% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHH-hhhcCch
Q psy6686 10 AKFEELIRKYRVRPTALLPFWNVAGFVLGAG-SALLGPK 47 (131)
Q Consensus 10 ~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~-tal~G~~ 47 (131)
-.|+=++.+-..|-|-|...-.+.||++|++ +|++=-|
T Consensus 28 v~FNYllAqgef~LSTLla~lF~~G~~lgwli~g~fy~k 66 (97)
T COG3771 28 VTFNYLLAQGEFRLSTLLATLFAAGFALGWLICGLFYLK 66 (97)
T ss_pred EeeeehhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999964 6665433
No 83
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=22.38 E-value=71 Score=19.90 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=28.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHH
Q psy6686 45 GPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHK 87 (131)
Q Consensus 45 G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~ 87 (131)
|..=.+.+.+..|.-|.+...+|.+.-.....-.+++++.|++
T Consensus 10 g~~C~~~~~a~tedEll~~~~~Ha~~~Hg~~~~~~el~~~ir~ 52 (57)
T PF06348_consen 10 GPDCGFVIRAETEDELLEAVVEHAREVHGMTEIPEELREKIRS 52 (57)
T ss_pred CCCCCeEEeeCCHHHHHHHHHHHHHHhcCCccCCHHHHHHHHH
Confidence 3333444556688899999999998876543335677666655
No 84
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.38 E-value=3e+02 Score=19.64 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=46.4
Q ss_pred CCccchhHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhcHHHHHHHHHHH--HHHHhHHHh
Q psy6686 22 RPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSD-PAANRELMDVIHKFR--DEEQEHHDT 98 (131)
Q Consensus 22 RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~avE~~V~~Hy~~ql~~L~~~-~~~~~~l~~~i~~~r--~dE~~H~d~ 98 (131)
|+..+.|.-.+--++==+.+.+. +++-++-+.||+.+-.-++.||..|.-- .++-...++++-+=| .++++++-.
T Consensus 6 ~~~~m~~~~~~e~~~~ql~e~~a--~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~ 83 (103)
T COG2960 6 RAMTMIGPNRFEDIAAQLSEDAA--GAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIE 83 (103)
T ss_pred cchhccCHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333333333333333 3567888999999999999999999542 222233344454444 356777776
Q ss_pred hHhC
Q psy6686 99 GLEH 102 (131)
Q Consensus 99 A~~~ 102 (131)
++++
T Consensus 84 ~LEa 87 (103)
T COG2960 84 ELEA 87 (103)
T ss_pred HHHH
Confidence 6664
No 85
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.09 E-value=71 Score=18.79 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=16.6
Q ss_pred hcHHHHHHHHHHHHHHHhHHHhhHhCC
Q psy6686 77 ANRELMDVIHKFRDEEQEHHDTGLEHG 103 (131)
Q Consensus 77 ~~~~l~~~i~~~r~dE~~H~d~A~~~g 103 (131)
.++++++.|+++++.| +=...|.++|
T Consensus 15 ~d~~l~~~l~~~~~~~-e~~~lA~~~G 40 (49)
T PF07862_consen 15 SDPELREQLKACQNPE-EVVALAREAG 40 (49)
T ss_pred cCHHHHHHHHhcCCHH-HHHHHHHHcC
Confidence 4788888888877443 3445555555
No 86
>KOG1467|consensus
Probab=21.41 E-value=1.8e+02 Score=26.43 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCC---ChhcHHHHHHHHHHHHHHHhHHHhhHhC
Q psy6686 63 HYNEQLRALMSD---PAANRELMDVIHKFRDEEQEHHDTGLEH 102 (131)
Q Consensus 63 Hy~~ql~~L~~~---~~~~~~l~~~i~~~r~dE~~H~d~A~~~ 102 (131)
-++.+|..|+.+ .+...+|...|.+|-+|-+.|++.|+..
T Consensus 309 flK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q 351 (556)
T KOG1467|consen 309 FLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQ 351 (556)
T ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777664 2345678899999999999999999653
No 87
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=20.86 E-value=3e+02 Score=19.16 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHHhHHHhhHhCCCCCChhHHHHHHH
Q psy6686 60 IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDV 116 (131)
Q Consensus 60 V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE~~H~d~A~~~ga~~~p~~~~~~~~ 116 (131)
....+.+-|.+||+ .. +++|.-..-++..+.++|...|-...-++..+..+
T Consensus 96 ~~~~l~~~l~~Lp~---~~---r~v~~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra 146 (161)
T PRK09047 96 VLQLIEEAIQKLPA---RQ---REAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRA 146 (161)
T ss_pred HHHHHHHHHHhCCH---HH---HHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33456666777755 34 44488888999999999999986655555444433
No 88
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.41 E-value=1.8e+02 Score=21.39 Aligned_cols=42 Identities=19% Similarity=0.427 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHH
Q psy6686 47 KGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEE 92 (131)
Q Consensus 47 ~~~~a~t~avE~~V~~Hy~~ql~~L~~~~~~~~~l~~~i~~~r~dE 92 (131)
+.++-|+-.--.-.-.=|.++|..|-+ +...|+.|..|..++
T Consensus 35 klAL~cll~~k~~~l~pY~d~L~~Lld----d~~frdeL~~f~~~~ 76 (141)
T PF07539_consen 35 KLALDCLLTWKDPYLTPYKDNLENLLD----DKTFRDELTTFNLSD 76 (141)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHcC----cchHHHHHHhhcccC
Confidence 567778877766555668999999977 567888888888766
No 89
>PF12607 DUF3772: Protein of unknown function (DUF3772); InterPro: IPR022249 This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with PF00924 from PFAM.
Probab=20.28 E-value=93 Score=19.70 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCCccchhHH
Q psy6686 9 KAKFEELIRKYRVRPTALLPFW 30 (131)
Q Consensus 9 l~~f~~~l~~~~~RpS~L~PlW 30 (131)
..-|.+.|-+++ ||.|+|-.
T Consensus 22 R~~~~~~L~~r~--~SpL~P~~ 41 (64)
T PF12607_consen 22 RERFTSQLLERS--PSPLNPAF 41 (64)
T ss_pred HHHHHHHHHHcC--CCCCCHHH
Confidence 456778888884 99999943
Done!