RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6686
(131 letters)
>gnl|CDD|217441 pfam03232, COQ7, Ubiquinone biosynthesis protein COQ7. Members of
this family contain two repeats of about 90 amino acids,
that contains two conserved motifs. One of these DXEXXH
may be part of an enzyme active site.
Length = 170
Score = 224 bits (574), Expect = 6e-77
Identities = 80/131 (61%), Positives = 97/131 (74%), Gaps = 1/131 (0%)
Query: 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVI 60
MWDQEK H A F ELI + RVRPT LLP W+VAGF LGAG+ALLG K AMACT AVE+VI
Sbjct: 41 MWDQEKVHLATFNELILERRVRPTLLLPLWHVAGFALGAGTALLGKKAAMACTAAVETVI 100
Query: 61 VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVG 120
+HYN+QLR L ++EL + I KFRDEE EH DT +EHGAEQAP Y L++ IK G
Sbjct: 101 DEHYNDQLRELEELD-DDKELKETIAKFRDEELEHRDTAIEHGAEQAPAYPLLSGAIKAG 159
Query: 121 CKVAIGVAKVV 131
C+ AI +++ +
Sbjct: 160 CRAAIALSERI 170
>gnl|CDD|153101 cd01042, DMQH, Demethoxyubiquinone hydroxylase, ferritin-like
diiron-binding domain. Demethoxyubiquinone hydroxylases
(DMQH) are members of the ferritin-like,
diiron-carboxylate family which are present in
eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the
Coq7 family). DMQH participates in one of the last steps
of ubiquinone biosysnthesis and is responsible for DMQ
hydroxylation, resulting in the formation of
hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a
mitochondrial inner membrane protein and Coq7 is a
proposed interfacial integral membrane protein.
Mutations in the Caenorhabditis elegans gene clk-1
affect biological timing and extend longevity. The
conserved residues of a diiron center are present in
this domain.
Length = 165
Score = 180 bits (459), Expect = 1e-59
Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVI 60
M D+EK H A FEEL+ + VRP+ LLP W VAGF LGA +ALLG K AMACT AVE+V+
Sbjct: 38 MLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKAAMACTAAVETVV 97
Query: 61 VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVG 120
+HYN+QLR L + P ++EL +I +FRD+E EH D E GAE+AP Y L+ +IK G
Sbjct: 98 EEHYNDQLRELPAQP--DKELRAIIEQFRDDELEHADIAEELGAEKAPLYALLKALIKAG 155
Query: 121 CKVAIGVAK 129
CKVAI +AK
Sbjct: 156 CKVAIWLAK 164
>gnl|CDD|225492 COG2941, CAT5, Ubiquinone biosynthesis protein COQ7 [Coenzyme
metabolism].
Length = 204
Score = 136 bits (345), Expect = 7e-42
Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVI 60
M D+E H A FE+ + + VRP+ L P W A F LGAG+ LLG K AM T AVE+VI
Sbjct: 79 MADEEIDHLAWFEQRLLELGVRPSLLNPLWYAAAFALGAGAGLLGDKAAMGFTEAVETVI 138
Query: 61 VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVG 120
HY+ QLR L P + EL ++ +FRD+E EH D + G A F +T +K+
Sbjct: 139 EKHYDGQLREL---PNLDAELRAILAQFRDDELEHLDNAIAAGE--AIFPAPITKAMKLI 193
Query: 121 CKVAIGVAK 129
C++ I A
Sbjct: 194 CRIMIKSAY 202
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of
diiron-containing four-helix-bundle proteins.
Ferritin-like, diiron-carboxylate proteins participate
in a range of functions including iron regulation,
mono-oxygenation, and reactive radical production. These
proteins are characterized by the fact that they
catalyze dioxygen-dependent oxidation-hydroxylation
reactions within diiron centers; one exception is
manganese catalase, which catalyzes peroxide-dependent
oxidation-reduction within a dimanganese center.
Diiron-carboxylate proteins are further characterized by
the presence of duplicate metal ligands, glutamates and
histidines (ExxH) and two additional glutamates within a
four-helix bundle. Outside of these conserved residues
there is little obvious homology. Members include
bacterioferritin, ferritin, rubrerythrin, aromatic and
alkene monooxygenase hydroxylases (AAMH), ribonucleotide
reductase R2 (RNRR2), acyl-ACP-desaturases
(Acyl_ACP_Desat), manganese (Mn) catalases,
demethoxyubiquinone hydroxylases (DMQH), DNA protecting
proteins (DPS), and ubiquinol oxidases (AOX), and the
aerobic cyclase system, Fe-containing subunit (ACSF).
Length = 130
Score = 40.2 bits (94), Expect = 4e-05
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGPKGAMACTVAVESVI 60
+ D+E+ H E +R+ P P A+ + VE+
Sbjct: 36 IADEERRHADALAERLRELGGTPPLPPAH---LLAAYALPKTSDDPAEALRAALEVEARA 92
Query: 61 VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEH 102
+ Y E + A + EL ++ + +EQ H +
Sbjct: 93 IAAYRELIEQ-----ADDPELRRLLERILADEQRHAAWFRKL 129
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 31.7 bits (72), Expect = 0.094
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 3 DQEKAHKAKFEELIRKYRVRPTALLPFW--NVA 33
+EK+ K+KF E IR + +PT P NVA
Sbjct: 874 GREKSKKSKFSEFIRAHVFKPTMETPRPLKNVA 906
>gnl|CDD|153104 cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like
proteins found in archaea and bacteria. Ferritin-like
domain found in archaea and bacteria (Ferritin_like_AB).
This uncharacterized domain is a member of a broad
superfamily of ferritin-like diiron-carboxylate proteins
whose function is unknown. This family includes unknown
or hypothetical proteins which were sequenced from
mostly anaerobic or microaerophilic metal-metabolizing
and/or nitrogen-fixing microbes. The family includes
sequences from ferric-, sulfate-, and arsenic-reducing
bacteria, Geobacter, Magnetospirillum, Desulfovibrio,
and Desulfitobacterium. Also included are several
nitrogen-fixing endosymbiotic bacteria, Rhizobium,
Mesorhizobium, and Bradyrhizobium; also phototrophic
purple nonsulfur bacteria, Rhodobacter and
Rhodopseudomonas, as well as, obligate thermophiles,
Thermotoga, Thermoanaerobacter, and Pyrococcus. The
conserved residues of a diiron center are present in
this uncharacterized domain.
Length = 139
Score = 28.9 bits (65), Expect = 0.49
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 1 MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLG------AGSALLGPKGAMACTV 54
+ ++EK H + EEL K L + V A +L+ P A+ +
Sbjct: 36 LAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALESLMDPLEALRLAI 95
Query: 55 AVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEH 95
+E ++ Y E+L DP ++L + + +EE+ H
Sbjct: 96 EIEKDAIEFY-EELAEKAEDPEV-KKLFE---ELAEEERGH 131
>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a
nuclear-encoded protein required for the splicing of
group II introns in the chloroplast. CRS2 forms stable
complexes with two CRS2-associated factors, CAF1 and
CAF2, which are required for the splicing of distinct
subsets of CRS2-dependent introns. CRS2 is closely
related to bacterial peptidyl-tRNA hydrolases (PTH).
Length = 191
Score = 28.6 bits (64), Expect = 0.83
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 44 LGPKGAMACTVAVESVIVDHYNE-----QLRALMSDPAANRELMD----VIHKFRDEEQE 94
L PKG ++SVI +H + +L + P MD ++ KF EE+E
Sbjct: 103 LQPKGGHGRHNGLQSVI-EHLDGSREFPRLSIGIGSPPGK---MDPRAFLLQKFSSEERE 158
Query: 95 HHDTGLEHGAE 105
DT LE G +
Sbjct: 159 QIDTALEQGVD 169
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 28.0 bits (62), Expect = 1.5
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 66 EQLRALMSDPAANRELMDVIHKFRDEEQ-EHHDTGLEHGAEQAPFYKLMTDVIK 118
QL + + + ++D+I + E EHHD L AE + + ++ K
Sbjct: 6 TQLSETLRHDSDLQTVLDIIEQSTKFEALEHHDGNLS--AEISKCLNNILNISK 57
>gnl|CDD|220555 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 27.2 bits (61), Expect = 2.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 5 EKAHKAKFEELIRKYRVRPTALLPF-------WNVAGFVLGAGSALL 44
KA + K EEL+R++ TAL P WN+ F+ G L+
Sbjct: 475 LKAQRRKHEELLRQFDRLQTALFPNGAPQERVWNIFYFLNKYGPDLI 521
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 27.0 bits (60), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 27 LPFWNVAGFVLGAGSALL 44
L F ++AGFVLGAG +L
Sbjct: 159 LDFGSIAGFVLGAGVVVL 176
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor
(ARF-GEF); Provisional.
Length = 1780
Score = 26.7 bits (59), Expect = 4.7
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 38 GAGSALLGPK------GAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDV 84
G + LL P+ AM C VA+ + D N+QLR + DPA+ ++L V
Sbjct: 521 GVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLR--LPDPASLKKLDAV 571
>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel. This family
contains the cation channel region of PKD1 and PKD2
proteins.
Length = 423
Score = 26.5 bits (59), Expect = 5.0
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 12 FEELIRKYRVRPTALLPFWNVAGFVLGAGSALLG 45
E+ + R P L WN+ + A S ++
Sbjct: 224 VAEITKIRREGPRYLRSVWNLLDLAIVALSVVVI 257
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism].
Length = 311
Score = 26.5 bits (59), Expect = 5.1
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 32 VAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALM 72
VAG +G + L A T +V+ Y EQ+ L+
Sbjct: 117 VAG-SIGPTNKTLSISPDFAVTFDE---LVEAYREQVEGLI 153
>gnl|CDD|226640 COG4171, SapC, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 296
Score = 26.3 bits (58), Expect = 5.2
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 4 QEKAHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSALLGP 46
EK RK+R A+ + +AG L L G
Sbjct: 8 SEKRPPTTLRTAWRKFRSDAIAMFGLYGLAGLAL---LCLFGG 47
>gnl|CDD|226858 COG4451, RbcS, Ribulose bisphosphate carboxylase small subunit
[Energy production and conversion].
Length = 127
Score = 25.9 bits (57), Expect = 5.3
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 40 GSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMD-VIHK 87
G+ + G K A +E+ DH E +R + DP R ++ ++H+
Sbjct: 57 GTPMFGAKTAGEVLAELEACRADHPGEYIRLIGFDPKGKRRVVSFIVHR 105
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 26.0 bits (58), Expect = 5.9
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 61 VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEH 102
++ YNE +R L++ A ++ +++ H D + E + T L
Sbjct: 133 LEIYNETIRDLLATKPAPKKKLEIKH---DSKGETYVTNLTE 171
>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. This family of proteins encompasses
the E. coli WcaJ protein involved in colanic acid
biosynthesis , the Methylobacillus EpsB protein involved
in methanolan biosynthesis , as well as the GumD protein
involved in the biosynthesis of xanthan. All of these
are closely related to the well-characterized WbaP
(formerly RfbP) protein which is the first enzyme in
O-antigen biosynthesis in Salmonella typhimurium. The
enzyme transfers galactose from UDP-galactose (NOTE: not
glucose) to a polyprenyl carrier (utilizing the highly
conserved C-terminal sugar transferase domain,
pfam02397) a reaction which takes place at the
cytoplasmic face of the inner membrane. The N-terminal
hydrophobic domain is then believed to facilitate the
"flippase" function of transferring the liposaccharide
unit from the cytoplasmic face to the periplasmic face
of the inner membrane. Most of these genes are found
within large operons dedicated to the production of
complex exopolysaccharides such as the enterobacterial
O-antigen. Colanic acid biosynthesis utilizes a
glucose-undecaprenyl carrier , knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 26.4 bits (59), Expect = 6.0
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 7 AHKAKFEELIRKY----RVRP 23
AH ++ +LI Y +V+P
Sbjct: 373 AHNEQYRKLIPGYMLRHKVKP 393
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the
phosphorylation of ribofuranosyl-containing nucleoside
analogues at the 5'-hydroxyl using ATP or GTP as the
phosphate donor.The physiological function of AK is
associated with the regulation of extracellular
adenosine levels and the preservation of intracellular
adenylate pools. Adenosine kinase is involved in the
purine salvage pathway. .
Length = 312
Score = 26.0 bits (58), Expect = 7.0
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 26/76 (34%)
Query: 7 AHKAKFEELIRKYRVRPTALLPFWNVAGFVLGAGSAL--------LGPKGAMACTVAVES 58
A + EEL+ K V+ +AG GSA LG A V
Sbjct: 36 ADMEEQEELLAKLPVK--------YIAG-----GSAANTIRGAAALGGSAAFIGRVG--- 79
Query: 59 VIVDHYNEQLRALMSD 74
D + L +
Sbjct: 80 --DDKLGDFLLKDLRA 93
>gnl|CDD|214432 MTH00144, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 328
Score = 26.0 bits (58), Expect = 7.6
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 13/38 (34%)
Query: 35 FVLGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALM 72
V+ SAL+G G + T Q+RAL+
Sbjct: 148 CVISVLSALVGSIGGLNQT-------------QVRALL 172
>gnl|CDD|225648 COG3106, COG3106, Predicted ATPase [General function prediction
only].
Length = 467
Score = 25.8 bits (57), Expect = 7.7
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 49 AMACTVAVESVIVDHYNEQLRALMSDPAANRELMDV 84
A+A A S VD E++ A+ A+ +
Sbjct: 378 ALASVRATRSGTVDQGGEKIPAIRGTRLADGAPTTI 413
>gnl|CDD|234437 TIGR03998, thiol_BshC, bacillithiol biosynthesis cysteine-adding
enzyme BshC. Members of this protein family are BshC,
an enzyme required for bacillithiol biosynthesis and
described as a cysteine-adding enzyme. Bacillithiol is a
low-molecular-weight thiol, an analog of glutathione and
mycothiol, and is found largely in the Firmicutes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 528
Score = 25.7 bits (57), Expect = 8.3
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 5 EKAHKAKFEELIRKYRVRPTALLP-------FWNVAGFVLGAGSALLGP 46
+A + K + ++++ T L P WNV ++ G L+
Sbjct: 465 LRAIRRKHDVELQQFDRIQTNLRPNGALQERVWNVFYYLNKYGPDLIEK 513
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 25.6 bits (56), Expect = 9.6
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 6/31 (19%)
Query: 103 GAEQAPFY--KLMTDVIKVGCKVAIGVAKVV 131
GAEQ FY KL+T V++ G V++G K+V
Sbjct: 392 GAEQ--FYNEKLVTQVLRTG--VSVGAKKLV 418
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 25.5 bits (56), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 64 YNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE-HGAEQ 106
YNEQL L+ D E + + D EQ H GL H A
Sbjct: 140 YNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATT 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,787,654
Number of extensions: 612180
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 54
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)