RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6686
         (131 letters)



>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 158

 Score = 52.2 bits (124), Expect = 4e-10
 Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 1   MWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGF---VLGAGSALLGPKGAMACTVAVE 57
           + ++EK H+A   +L  +       + P  ++      V      +      +   +  E
Sbjct: 49  LAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAE 108

Query: 58  SVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 98
            +  + Y +     + +     E   ++    D E+ H+ T
Sbjct: 109 EIAAEFYLK-----LEEMVKEEEKKRLMRYLADMERGHYYT 144


>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score = 25.0 bits (54), Expect = 3.1
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 67  QLRALMSDPAANRELMD-VIHKFRDEEQEHHDTGLEHGAE 105
           +L   +  P    +    ++ KF  EE+   DT LE G +
Sbjct: 131 RLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVD 170


>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 228

 Score = 24.1 bits (51), Expect = 6.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 28  PFWNVAGFVLGAGSALLGPKGAMACTVAVESVIVDHYNEQL 68
           P  N+ G V+G  +A++ P+ A+    A+    V  + + +
Sbjct: 186 PLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTI 226


>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
           batatas) [TaxId: 4120]}
          Length = 341

 Score = 24.0 bits (51), Expect = 7.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 12  FEELIRKYRVRPTALLPFWN 31
           +E ++ K    P+  LPFWN
Sbjct: 125 YERILGKLIGDPSFGLPFWN 144


>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli
           [TaxId: 562]}
          Length = 111

 Score = 23.5 bits (50), Expect = 7.5
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 57  ESVIVDHYNEQLRALMSDPAA----NRELMDVIHKFRDEEQEHHDTGLEHGAEQ-APFYK 111
           E V++ H   +LR  M D        + L   + +    +QE  +              +
Sbjct: 10  ERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELR 69

Query: 112 LMTDVIKVGCKVAI 125
            +  V ++  + A+
Sbjct: 70  NLVQVAELIVRCAM 83


>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli
           [TaxId: 562]}
          Length = 123

 Score = 23.6 bits (51), Expect = 7.8
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 49  AMACTVAVESV--IVDHYNEQLRALMSDPAANRELM 82
            +A  ++   +  I+         LMS    NREL+
Sbjct: 69  ELANHLSPSRLQAILGDVCHIREQLMSVTGINRELL 104


>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167
          {Nitrosomonas europaea [TaxId: 915]}
          Length = 91

 Score = 22.8 bits (49), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 3  DQEKAHKAKFEELIRKY 19
          D+EK H A   E IR+ 
Sbjct: 55 DEEKEHAAMLLEWIRRC 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,390
Number of extensions: 20573
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 12
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)