BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6687
         (116 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
           Of Human Wnt Inhibitory Factor 1 In Complex With
           1,2-Dipalmitoylphosphatidylcholine
          Length = 324

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 70/141 (49%), Gaps = 29/141 (20%)

Query: 1   MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGG------------ 48
           +C+CP G+ G +C  A+C P+C+N G C  PG C CPPGF G++C+              
Sbjct: 166 ICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTC 225

Query: 49  --PG-----PG----------CDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLN 91
             PG     PG          C Q C NGG C  +  C+C KGYQG  C   +C P C  
Sbjct: 226 FYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGA 285

Query: 92  NGTCTAPGVCSCPPGFQGLHC 112
           +GTC  P  C C  G+ G HC
Sbjct: 286 HGTCHEPNKCQCQEGWHGRHC 306



 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 22  CLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCG 81
           C N G C    +C CP GF G HCE      C  +C NGG C +   C CP G+ G  C 
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCEKAL---CTPRCMNGGLCVTPGFCICPPGFYGVNCD 211

Query: 82  TAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
            A C   C N GTC  PG C CPPG +G  CE
Sbjct: 212 KANCSTTCFNGGTCFYPGKCICPPGLEGEQCE 243


>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
 pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
          Length = 169

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 15/120 (12%)

Query: 4   CPKGYQGTYCGTAMCFPQCL-NNGTCTAPGVCSCPPGFQGLHCEG-GPGPGCDQKCSNGG 61
           C +G+ G  C  A+C   C   +G+C  PG C C  G+QGL+C+   P PGC       G
Sbjct: 54  CMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVH-----G 108

Query: 62  WCDSQQMCQCPKGYQGTYCGTAMCF----PQCLNNGTCTAPG----VCSCPPGFQGLHCE 113
            C+    C C   + G  C   + +      CLN GTC+  G     CSCP G+ G +CE
Sbjct: 109 ICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGP-GCDQKCSNG 60
           C+C  G+QG YC   +  P C+ +G C  P  C C   + G  C+      G  Q C NG
Sbjct: 85  CRCQYGWQGLYCDKCIPHPGCV-HGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNG 143

Query: 61  GWCDS----QQMCQCPKGYQGTYC 80
           G C +    +  C CP+GY G  C
Sbjct: 144 GTCSNTGPDKYQCSCPEGYSGPNC 167



 Score = 33.9 bits (76), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 63  CDSQQMCQCPKGYQGTYCGTAMCFPQCL-NNGTCTAPGVCSCPPGFQGLHCE 113
           CD      C +G+ G  C  A+C   C   +G+C  PG C C  G+QGL+C+
Sbjct: 46  CDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD 97


>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
 pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
          Length = 423

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 47/116 (40%), Gaps = 25/116 (21%)

Query: 22  CLNNGTCTAP-GVCSCPPGFQGLHCEGG-----PGPGCDQKCSNGGWCDSQQMC------ 69
           C+NNG C    G C CPPGF G  CE        G  C ++CS    C S   C      
Sbjct: 205 CMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYG 264

Query: 70  -QCPKGYQGTYCGTAMCFP-----------QCLNNGTCTAPGVCSCPPGFQGLHCE 113
             C  G++G  C  A C P            C N   C     C C PG+QGL CE
Sbjct: 265 CSCATGWKGLQCNEA-CHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCE 319


>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Desert Hedgehog Without
           Calcium
 pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Desert Hedgehog Without
           Calcium
          Length = 463

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 53  CDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHC 112
           C + C NG +C     C C  G++G +C TA C P C + G C  P  C C  G+ G  C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453

Query: 113 E 113
           E
Sbjct: 454 E 454



 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 4   CPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
           C  G++G +C TA C P C + G C  P  C C  G+ G  CE
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 454



 Score = 33.1 bits (74), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 24  NNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYC 80
            NG CT  G C C PG++G  C       C+  C +GG C     C C KGY G  C
Sbjct: 400 RNGYCTPTGKCCCSPGWEGDFCRTAK---CEPACRHGGVCVRPNKCLCKKGYLGPQC 453


>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Sonic Hedgehog In The
           Presence Of Calcium
 pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Sonic Hedgehog Without
           Calcium
          Length = 457

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 53  CDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHC 112
           C + C NG +C     C C  G++G +C TA C P C + G C  P  C C  G+ G  C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453

Query: 113 E 113
           E
Sbjct: 454 E 454



 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 4   CPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
           C  G++G +C TA C P C + G C  P  C C  G+ G  CE
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 454



 Score = 33.1 bits (74), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 24  NNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYC 80
            NG CT  G C C PG++G  C       C+  C +GG C     C C KGY G  C
Sbjct: 400 RNGYCTPTGKCCCSPGWEGDFCRTAK---CEPACRHGGVCVRPNKCLCKKGYLGPQC 453


>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
 pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
          Length = 458

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 53  CDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHC 112
           C + C NG +C     C C  G++G +C TA C P C + G C  P  C C  G+ G  C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453

Query: 113 E 113
           E
Sbjct: 454 E 454



 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 4   CPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
           C  G++G +C TA C P C + G C  P  C C  G+ G  CE
Sbjct: 412 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 454



 Score = 33.1 bits (74), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 24  NNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYC 80
            NG CT  G C C PG++G  C       C+  C +GG C     C C KGY G  C
Sbjct: 400 RNGYCTPTGKCCCSPGWEGDFCRTAK---CEPACRHGGVCVRPNKCLCKKGYLGPQC 453


>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
 pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
          Length = 481

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 53  CDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHC 112
           C + C NG +C     C C  G++G +C TA C P C + G C  P  C C  G+ G  C
Sbjct: 416 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 474

Query: 113 E 113
           E
Sbjct: 475 E 475



 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 4   CPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
           C  G++G +C TA C P C + G C  P  C C  G+ G  CE
Sbjct: 433 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475



 Score = 32.7 bits (73), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 24  NNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYC 80
            NG CT  G C C PG++G  C       C+  C +GG C     C C KGY G  C
Sbjct: 421 RNGYCTPTGKCCCSPGWEGDFCRTAK---CEPACRHGGVCVRPNKCLCKKGYLGPQC 474


>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
 pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
           And Sonic Hedgehog (shh) Complex
 pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
           And Sonic Hedgehog (shh) Complex
          Length = 481

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 53  CDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHC 112
           C + C NG +C     C C  G++G +C TA C P C + G C  P  C C  G+ G  C
Sbjct: 416 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 474

Query: 113 E 113
           E
Sbjct: 475 E 475



 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 4   CPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
           C  G++G +C TA C P C + G C  P  C C  G+ G  CE
Sbjct: 433 CSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 475



 Score = 32.7 bits (73), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 24  NNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYC 80
            NG CT  G C C PG++G  C       C+  C +GG C     C C KGY G  C
Sbjct: 421 RNGYCTPTGKCCCSPGWEGDFCRTAK---CEPACRHGGVCVRPNKCLCKKGYLGPQC 474


>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
          Length = 135

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 2   CQCPKGYQGTYCGTAM--CFPQ-CLNNGTC---TAPGVCSCPPGFQGLHCEGGPGPGCDQ 55
           CQC +GY G  C   +  C    C N+ TC        C C PG++G+HCE         
Sbjct: 30  CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASS 89

Query: 56  KCSNGGWC---DSQQMCQCPKGYQGTYCGTAM 84
            C + G C    ++  C+CP G+ G  C   +
Sbjct: 90  PCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121



 Score = 30.8 bits (68), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 34  CSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ---MCQCPKGYQGTYC--GTAMCFPQ 88
           C C  G+ G  CE          C N   C  Q     C C  GY+G +C   T  C   
Sbjct: 30  CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASS 89

Query: 89  -CLNNGTC---TAPGVCSCPPGFQGLHCE 113
            CL+NG C        C CP GF G  C+
Sbjct: 90  PCLHNGRCLDKINEFQCECPTGFTGHLCQ 118



 Score = 30.4 bits (67), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 69  CQCPKGYQGTYCGTAM--CFPQ-CLNNGTC---TAPGVCSCPPGFQGLHCEGGT 116
           CQC +GY G  C   +  C    C N+ TC        C C PG++G+HCE  T
Sbjct: 30  CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT 83


>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
          Length = 116

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 2   CQCPKGYQGTYCGTAM--CFPQ-CLNNGTC---TAPGVCSCPPGFQGLHCEGGPGPGCDQ 55
           CQC +GY G  C   +  C    C N+ TC        C C PG++G+HCE         
Sbjct: 28  CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASS 87

Query: 56  KCSNGGWC---DSQQMCQCPKGYQGTYC 80
            C + G C    ++  C+CP G+ G  C
Sbjct: 88  PCLHNGRCLDKINEFQCECPTGFTGHLC 115



 Score = 30.8 bits (68), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 34  CSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ---MCQCPKGYQGTYC--GTAMCFPQ 88
           C C  G+ G  CE          C N   C  Q     C C  GY+G +C   T  C   
Sbjct: 28  CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASS 87

Query: 89  -CLNNGTC---TAPGVCSCPPGFQGLHCE 113
            CL+NG C        C CP GF G  C+
Sbjct: 88  PCLHNGRCLDKINEFQCECPTGFTGHLCQ 116



 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 69  CQCPKGYQGTYCGTAM--CFPQ-CLNNGTC---TAPGVCSCPPGFQGLHCEGGT 116
           CQC +GY G  C   +  C    C N+ TC        C C PG++G+HCE  T
Sbjct: 28  CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT 81


>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
 pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
          Length = 143

 Score = 34.3 bits (77), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 28/107 (26%)

Query: 2   CQCPKGYQGTYCGTAM--------------CFPQ-CLNNGTCTAPG----------VCSC 36
           C+CP G+    C + +              C P  C N GTC              VC C
Sbjct: 25  CECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKC 84

Query: 37  PPGFQGLHCEGGPGPGCDQKCSNGGWCD---SQQMCQCPKGYQGTYC 80
           P GF G+HC+        + C NGG C    +   C+CP  + G  C
Sbjct: 85  PRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNC 131



 Score = 33.5 bits (75), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 34/131 (25%)

Query: 17  MCFPQCLNNGTCTAPGV------CSCPPGFQGLHCEGGPGPGCDQK------------CS 58
           +C P    NG    PG+      C CP GF   +C        D++            C 
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61

Query: 59  NGGWCDSQQ----------MCQCPKGYQGTYCGTAMC---FPQCLNNGTCT---APGVCS 102
           NGG C+  +          +C+CP+G+ G +C   +       C N G CT   A   C 
Sbjct: 62  NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCE 121

Query: 103 CPPGFQGLHCE 113
           CP  F G +C+
Sbjct: 122 CPGEFMGRNCQ 132



 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 1   MCQCPKGYQGTYCGTAMC---FPQCLNNGTCT---APGVCSCPPGFQGLHCE 46
           +C+CP+G+ G +C   +       C N G CT   A   C CP  F G +C+
Sbjct: 81  VCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132


>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
           Factor 1 In Complex With
           1,2-Dipalmitoylphosphatidylcholine
          Length = 188

 Score = 33.1 bits (74), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 57  CSNGGWCDSQQMCQCPKGYQGTYC 80
           C NGG+C+ +++C+CP G+ G +C
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHC 178



 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 22  CLNNGTCTAPGVCSCPPGFQGLHCEG 47
           C N G C    +C CP GF G HCEG
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCEG 180



 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 89  CLNNGTCTAPGVCSCPPGFQGLHCEG 114
           C N G C    +C CP GF G HCEG
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCEG 180


>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
           Inhibitory Factor 1 In Complex With
           1,2-Dipalmitoylphosphatidylcholine
          Length = 188

 Score = 33.1 bits (74), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 57  CSNGGWCDSQQMCQCPKGYQGTYC 80
           C NGG+C+ +++C+CP G+ G +C
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHC 178



 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 22  CLNNGTCTAPGVCSCPPGFQGLHCEG 47
           C N G C    +C CP GF G HCEG
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCEG 180



 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 89  CLNNGTCTAPGVCSCPPGFQGLHCEG 114
           C N G C    +C CP GF G HCEG
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCEG 180


>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
           Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
           Representative Structure)
          Length = 91

 Score = 28.5 bits (62), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 87  PQCLNNGTCT-----APGVCSCPPGFQGLHCEGGT 116
           P+C N GTC      +  VC CP GF G  CE  T
Sbjct: 54  PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 88



 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 5/32 (15%)

Query: 20 PQCLNNGTCT-----APGVCSCPPGFQGLHCE 46
          P+C N GTC      +  VC CP GF G  CE
Sbjct: 54 PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85


>pdb|1AUT|L Chain L, Human Activated Protein C
          Length = 114

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 2  CQCPKGYQGTYCGTAMCFPQC-LNNGTCTA-------PGVCSCPPGFQ 41
          C C  G++G +C   + F  C L+NG CT           CSC PG++
Sbjct: 37 CDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK 84



 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 69  CQCPKGYQGTYCGTAMCFPQC-LNNGTCTA-------PGVCSCPPGFQ 108
           C C  G++G +C   + F  C L+NG CT           CSC PG++
Sbjct: 37  CDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK 84


>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
          Complexed With Ppack
          Length = 98

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 2  CQCPKGYQGTYCGTAMCFPQC-LNNGTCTA-------PGVCSCPPGFQ 41
          C C  G++G +C   + F  C L+NG CT           CSC PG++
Sbjct: 30 CDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK 77



 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 69  CQCPKGYQGTYCGTAMCFPQC-LNNGTCTA-------PGVCSCPPGFQ 108
           C C  G++G +C   + F  C L+NG CT           CSC PG++
Sbjct: 30  CDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK 77


>pdb|1PFX|L Chain L, Porcine Factor Ixa
          Length = 146

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 8   YQGTYCGTAMCFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCE-----GGPGPGCDQKCS 58
           +   Y     C P  CLN G C        C C  GF+G +CE           C Q C 
Sbjct: 41  FWKQYVDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCK 100

Query: 59  NGGWCDSQQMCQCPKGYQ 76
            G   DS+ +C C  GY+
Sbjct: 101 TGA--DSKVLCSCTTGYR 116


>pdb|2KB9|A Chain A, Human Jagged-1, Exon 6
          Length = 44

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 3  QCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
          +C  G+QG YC   +  P C+ +G C  P  C C   + G  C+
Sbjct: 1  RCQYGWQGLYCDKCIPHPGCV-HGICNEPWQCLCETNWGGQLCD 43



 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 70  QCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
           +C  G+QG YC   +  P C+ +G C  P  C C   + G  C+
Sbjct: 1   RCQYGWQGLYCDKCIPHPGCV-HGICNEPWQCLCETNWGGQLCD 43


>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
           Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
           Fluorophenyl]-
           3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
          Length = 146

 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 8   YQGTYCGTAMCFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCE-----GGPGPGCDQKCS 58
           +   Y     C P  CLN G C        C C  GF+G +CE           C Q C 
Sbjct: 41  FWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCK 100

Query: 59  NGGWCDSQQMCQCPKGYQ 76
            G   DS+ +C C  GY+
Sbjct: 101 TGA--DSKVLCSCTTGYR 116


>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
          Length = 478

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 22/67 (32%)

Query: 66  QQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAP---------------GVC--SCPPG-- 106
           Q+MC    G +        C P+CL  G+C+AP               GVC  +CPP   
Sbjct: 182 QKMCPSTCGKRACTENNECCHPECL--GSCSAPDNDTACVACRHYYYAGVCVPACPPNTY 239

Query: 107 -FQGLHC 112
            F+G  C
Sbjct: 240 RFEGWRC 246


>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
 pdb|1W2K|L Chain L, Tf7a_4380 Complex
          Length = 142

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 22  CLNNGTCTA---PGVCSCPPGFQGLHCEGGPGP---------GCDQKCSNGGWCDSQQMC 69
           C N G+C       +C C P F+G +CE              GC+Q CS+     +++ C
Sbjct: 55  CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT--GTKRSC 112

Query: 70  QCPKGY 75
           +C +GY
Sbjct: 113 RCHEGY 118


>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
           Viia/tissue Factor/pyrazinone Inhibitor
 pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
           Factor Complex.
 pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
 pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
           Pd0297121
 pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
           Ketone-factor Viia/soluble Tissue Factor Complex
 pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
           Tissue Factor Complexed With Bcx-3607
 pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
           Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
           K-Dependent Clotting Factors At Physiological Ca2+
 pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
           Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
           K-Dependent Clotting Factors At Physiological Ca2+
 pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
           Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
           K-Dependent Clotting Factors At Physiological Ca2+
          Length = 142

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 22  CLNNGTCTA---PGVCSCPPGFQGLHCEGGPGP---------GCDQKCSNGGWCDSQQMC 69
           C N G+C       +C C P F+G +CE              GC+Q CS+     +++ C
Sbjct: 55  CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHT--GTKRSC 112

Query: 70  QCPKGY 75
           +C +GY
Sbjct: 113 RCHEGY 118


>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
          Exosite Inhibitor E-76 And Coagulation Factor Viia
 pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
          Exosite Inhibitor E-76 And Coagulation Factor Viia
          Length = 101

 Score = 25.4 bits (54), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 22 CLNNGTCTA---PGVCSCPPGFQGLHCEGGPGP---------GCDQKCSNGGWCDSQQMC 69
          C N G+C       +C C P F+G +CE              GC+Q CS+     +++ C
Sbjct: 14 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG--TKRSC 71

Query: 70 QCPKGY 75
          +C +GY
Sbjct: 72 RCHEGY 77


>pdb|2FD6|A Chain A, Structure Of Human Urokinase Plasminogen Activator In
          Complex With Urokinase Receptor And An Anti-Upar
          Antibody At 1.9 A
          Length = 122

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 21 QCLNNGTCTAPGV------CSCPPGFQGLHCEGGPGPGC 53
           CLN GTC +         C+CP  F G HCE      C
Sbjct: 2  DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 40


>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
          Length = 95

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 22 CLNNGTCTA---PGVCSCPPGFQGLHCEGGPGP---------GCDQKCSNGGWCDSQQMC 69
          C N G+C       +C C P F+G +CE              GC+Q CS+     +++ C
Sbjct: 8  CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG--TKRSC 65

Query: 70 QCPKGY 75
          +C +GY
Sbjct: 66 RCHEGY 71


>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And
          Vitronectin Complex
 pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And
          Vitronectin Complex
          Length = 135

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 21 QCLNNGTCTAPGV------CSCPPGFQGLHCEGGPGPGC 53
           CLN GTC +         C+CP  F G HCE      C
Sbjct: 14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 52


>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
          Factor Viia In Complex With Soluble Tissue Factor
          Length = 94

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 22 CLNNGTCTA---PGVCSCPPGFQGLHCEGGPGP---------GCDQKCSNGGWCDSQQMC 69
          C N G+C       +C C P F+G +CE              GC+Q CS+     +++ C
Sbjct: 7  CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG--TKRSC 64

Query: 70 QCPKGY 75
          +C +GY
Sbjct: 65 RCHEGY 70


>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
           Factor Viia With Human Recombinant Soluble Tissue Factor
 pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
           Inhibited With A Bpti-Mutant
 pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
           Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
 pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
           Mimetic Inhibitor That Has Two Charge Groups In P2 And
           P4
 pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
           Ethylsulfonamide-D-Biphenylalanine-Gln-P-
           Aminobenzamidine
 pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
           Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
 pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
           Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
 pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
           Viia With Human Soluble Tissue Factor In The Presence Of
           Ca2+, Mg2+, Na+, And Zn2+
 pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
           ViiaTISSUE FACTOR And
           2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
           5-Difluro-4-[(1-Methyl-3-
           Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
 pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
           Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
 pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
           Selective Peptide Inhibitor
 pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
           Ethylsulfonamide-D-5-
           (3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
          Length = 152

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 22  CLNNGTCTA---PGVCSCPPGFQGLHCEGGPGP---------GCDQKCSNGGWCDSQQMC 69
           C N G+C       +C C P F+G +CE              GC+Q CS+     +++ C
Sbjct: 55  CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--TGTKRSC 112

Query: 70  QCPKGY 75
           +C +GY
Sbjct: 113 RCHEGY 118


>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
          Urokinase-Type Plasminogen Activator
          Length = 130

 Score = 25.4 bits (54), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 21 QCLNNGTCTAPGV------CSCPPGFQGLHCEGGPGPGC 53
           CLN GTC +         C+CP  F G HCE      C
Sbjct: 7  DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 45


>pdb|1PZS|A Chain A, Crystal Structure Of A Cu-Zn Superoxide Dismutase From
           Mycobacterium Tuberculosis At 1.63 Resolution
          Length = 208

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 31/97 (31%), Gaps = 17/97 (17%)

Query: 20  PQCLNNGTCTAPGVCSCPPGFQGL--HCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQG 77
           PQ  +    T P + +  P   GL  H E  PG              +Q +        G
Sbjct: 4   PQHASTVPGTTPSIWTGSPAPSGLSGHDEESPG--------------AQSLTSTLTAPDG 49

Query: 78  TYCGTA-MCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
           T   TA   F       T    GV    PGF GLH  
Sbjct: 50  TKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIH 86


>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
          Complex With Atf
          Length = 132

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 21 QCLNNGTCTAPGV------CSCPPGFQGLHCEGGPGPGC 53
           CLN GTC +         C+CP  F G HCE      C
Sbjct: 12 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 50


>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
           Determinants At The S1 Site Using An Artificial Ala190
           Protease (Ala190 Upa)
 pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
           Pharmacokinetics, Pharmacodynamics, And Efficacy In A
           Baboon Thrombosis Model
 pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
 pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
           Inhibitor
 pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
 pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
           Factor Viia Mutant In Complex With Soluble Tissue Factor
          Length = 152

 Score = 25.0 bits (53), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 22  CLNNGTCTA---PGVCSCPPGFQGLHCEGGPGP---------GCDQKCSNGGWCDSQQMC 69
           C N G+C       +C C P F+G +CE              GC+Q CS+     +++ C
Sbjct: 55  CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDH--TGTKRSC 112

Query: 70  QCPKGY 75
           +C +GY
Sbjct: 113 RCHEGY 118


>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
 pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
          Length = 426

 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 57  CSNGGWCDSQQMCQCPKGYQGTYCGTAMC 85
           C NGG C +   C CP  Y G  C    C
Sbjct: 373 CQNGGTCHNNVRCLCPAAYTGILCEKLRC 401


>pdb|3LAQ|A Chain A, Structure-Based Engineering Of Species Selectivity In
          The Upa-Upar Interaction
 pdb|3LAQ|B Chain B, Structure-Based Engineering Of Species Selectivity In
          The Upa-Upar Interaction
          Length = 134

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 22 CLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGC 53
          C++    +    CSCP  FQG HCE      C
Sbjct: 20 CVSYKYFSRIRRCSCPRKFQGEHCEIDASKTC 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.144    0.563 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,817,034
Number of Sequences: 62578
Number of extensions: 225648
Number of successful extensions: 775
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 312
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)