RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6687
         (116 letters)



>gnl|CDD|130316 TIGR01249, pro_imino_pep_1, proline iminopeptidase,
          Neisseria-type subfamily.  This model represents one of
          two related families of proline iminopeptidase in the
          alpha/beta fold hydrolase family. The fine
          specificities of the various members, including both
          the range of short peptides from which proline can be
          removed and whether other amino acids such as alanine
          can be also removed, may vary among members.
          Length = 306

 Score = 26.7 bits (59), Expect = 3.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 34 CSCPPGFQGLHCEGGPGPGCDQKC 57
             P G   +   GGPG G D  C
Sbjct: 22 SGNPDGKPVVFLHGGPGSGTDPGC 45


>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
          large number of membrane-bound and extracellular
          (mostly animal) proteins. Many of these proteins
          require calcium for their biological function and
          calcium-binding sites have been found to be located at
          the N-terminus of particular EGF-like domains;
          calcium-binding may be crucial for numerous
          protein-protein interactions. Six conserved core
          cysteines form three disulfide bridges as in non
          calcium-binding EGF domains, whose structures are very
          similar. EGF_CA can be found in tandem repeat
          arrangements.
          Length = 38

 Score = 24.1 bits (53), Expect = 4.8
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 22 CLNNGTCT-APG--VCSCPPGFQGLHCE 46
          C N GTC    G   CSCPPG+ G +CE
Sbjct: 11 CQNGGTCVNTVGSYRCSCPPGYTGRNCE 38



 Score = 24.1 bits (53), Expect = 4.8
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 89  CLNNGTCT-APG--VCSCPPGFQGLHCE 113
           C N GTC    G   CSCPPG+ G +CE
Sbjct: 11  CQNGGTCVNTVGSYRCSCPPGYTGRNCE 38


>gnl|CDD|220224 pfam09408, Spike_rec_bind, Spike receptor binding domain.  Spike is
           an envelope glycoprotein which aids viral entry into the
           host cell. This domain corresponds is the immunogenic
           receptor binding domain of the protein which binds to
           angiotensin-converting enzyme 2 (ACE2).
          Length = 212

 Score = 25.9 bits (57), Expect = 5.7
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 4/58 (6%)

Query: 11  TYCGTAM--CFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQ 66
           TYC   +     QC+N       G   CP G +   C    G      C     CD  
Sbjct: 154 TYCPCKLPTIKSQCVNFNFNGKTGTGVCPVGTKYRQCFQQFGRDVSDFC--DCVCDPD 209


>gnl|CDD|132238 TIGR03194, 4hydrxCoA_A, 4-hydroxybenzoyl-CoA reductase, alpha
           subunit.  This model represents the largest chain,
           alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In
           species capable of degrading various aromatic compounds
           by way of benzoyl-CoA, this enzyme can convert
           4-hydroxybenzoyl-CoA to benzoyl-CoA.
          Length = 746

 Score = 25.9 bits (57), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 26  GTCTAPGVCSCPPGFQGLHCEGG 48
           GT T  G  +CPP FQG    GG
Sbjct: 575 GTITVKGTYTCPPEFQGGKKRGG 597



 Score = 25.9 bits (57), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 93  GTCTAPGVCSCPPGFQGLHCEGG 115
           GT T  G  +CPP FQG    GG
Sbjct: 575 GTITVKGTYTCPPEFQGGKKRGG 597


>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins. 
          Length = 171

 Score = 25.0 bits (55), Expect = 9.2
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 51  PGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCF 86
           PG   K  +          +  KG++G Y    MC 
Sbjct: 106 PGYSIKVFDMEKFAQLLARELAKGFEGVYDLARMCT 141


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.144    0.563 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,170,772
Number of extensions: 378671
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 105
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)