RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6687
(116 letters)
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 91.8 bits (228), Expect = 9e-24
Identities = 46/112 (41%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C+CP G+ G +C A+C P+C+N G C PG C CPPGF G++C+ C C NGG
Sbjct: 167 CECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDK---ANCSTTCFNGG 223
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
C C CP G +G C + C C N G C C C G+QG C
Sbjct: 224 TCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCS 275
Score = 88.4 bits (219), Expect = 2e-22
Identities = 51/112 (45%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C CP G+ G C A C C N GTC PG C CPPG +G CE C Q C NGG
Sbjct: 199 CICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEI---SKCPQPCRNGG 255
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
C + C+C KGYQG C +C P C +GTC P C C G+ G HC
Sbjct: 256 KCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCN 307
Score = 66.0 bits (161), Expect = 3e-14
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C G + + G + + C+ C C NGG
Sbjct: 107 FPCLGKQDGVAA-FEVDVIVMNSEGNTI---LKTPQNAIFFKTCQQ---AECPGGCRNGG 159
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
+C+ +++C+CP G+ G +C A+C P+C+N G C PG C CPPGF G++C+
Sbjct: 160 FCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCD 211
Score = 61.4 bits (149), Expect = 1e-12
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C CP G +G C + C C N G C C C G+QG C P C+ C G
Sbjct: 231 CICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSK---PVCEPGCGAHG 287
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQC 89
C CQC +G+ G +C
Sbjct: 288 TCHEPNKCQCQEGWHGRHCNKRYEASLI 315
Score = 47.2 bits (112), Expect = 1e-07
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C+C KGYQG C +C P C +GTC P C C G+ G HC +
Sbjct: 263 CKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 60.1 bits (146), Expect = 1e-12
Identities = 27/113 (23%), Positives = 36/113 (31%), Gaps = 4/113 (3%)
Query: 2 CQCPKGYQGTYCGTA-MCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNG 60
C Y G C + C G +C G+ G C
Sbjct: 19 VTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNR--AICRQGCSPKH 76
Query: 61 GWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
G C C+C G+QG YC + P +G C P C C + G C+
Sbjct: 77 GSCKLPGDCRCQYGWQGLYCDKCIPHP-GCVHGICNEPWQCLCETNWGGQLCD 128
Score = 59.3 bits (144), Expect = 2e-12
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 2 CQCPKGYQGTYCGTAMCFPQ-CLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNG 60
C +G+ G C A+C +G+C PG C C G+QGL+C+
Sbjct: 52 KTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD----KCIPHPGCVH 107
Query: 61 GWCDSQQMCQCPKGYQGTYCGTAM----CFPQCLNNGTCTAPGV----CSCPPGFQGLHC 112
G C+ C C + G C + CLN GTC+ G CSCP G+ G +C
Sbjct: 108 GICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC 167
Query: 113 E 113
E
Sbjct: 168 E 168
Score = 58.1 bits (141), Expect = 4e-12
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 18 CFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQG 77
++G+ +C + G C P D CD C +G+ G
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDD--FFGHYACDQNGNKTCMEGWMG 60
Query: 78 TYCGTAMCFPQ-CLNNGTCTAPGVCSCPPGFQGLHCE 113
C A+C +G+C PG C C G+QGL+C+
Sbjct: 61 PECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD 97
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 59.0 bits (142), Expect = 1e-11
Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 15/126 (11%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCT-------APGVCSCPPGFQGLHCEGGPGPGCD 54
C+C G++G+ C CLN VC C G+Q C+ PGC
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQ--ECPGCP 597
Query: 55 QKCSNGGWCDSQQMCQCPKGYQGTYCGTA----MCFPQCLNNGTCTAPGVCSCPPGFQGL 110
C C + + KG G C A + TC C +
Sbjct: 598 SPCGKYISC--AECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLE 655
Query: 111 HCEGGT 116
+G
Sbjct: 656 QQDGMD 661
Score = 47.4 bits (112), Expect = 1e-07
Identities = 23/111 (20%), Positives = 29/111 (26%), Gaps = 6/111 (5%)
Query: 2 CQCPKGYQGTYCGTAMCFPQ-CLNNGTCTAPGVCSCPPGFQGLHCEGG-PGPGCDQKCSN 59
C+C GYQ C P C +C G G +C PG
Sbjct: 579 CECHSGYQLPLCQECPGCPSPCGKYISCA--ECLKFEKGPFGKNCSAACPGLQLSNNPVK 636
Query: 60 GGWCDSQQMCQCPKGYQGTYCGTAMCFP-QCLNNGTC-TAPGVCSCPPGFQ 108
G C + C Y + + C P C FQ
Sbjct: 637 GRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGENLYFQ 687
Score = 39.7 bits (92), Expect = 6e-05
Identities = 30/120 (25%), Positives = 38/120 (31%), Gaps = 21/120 (17%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNG 60
+C+C GY G C +C G + SC + C G C
Sbjct: 447 ICRCDTGYIGKNC-------ECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC------- 492
Query: 61 GWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAP-------GVCSCPPGFQGLHCE 113
G C K G YC + N C P G C C PGF+G C+
Sbjct: 493 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 552
Score = 32.4 bits (73), Expect = 0.022
Identities = 17/112 (15%), Positives = 25/112 (22%), Gaps = 13/112 (11%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C G C +N V + + G
Sbjct: 362 SFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLP 421
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
C+ + Q C G G+C C G+ G +CE
Sbjct: 422 QCECRCRDQSR------------DRSLCHGKGFLE-CGICRCDTGYIGKNCE 460
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 56.5 bits (136), Expect = 8e-11
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 29 TAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQ 88
P C C + C NG +C C C G++G +C TA C P
Sbjct: 376 LMPEECRATVQP-----AQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPA 429
Query: 89 CLNNGTCTAPGVCSCPPGFQGLHCE 113
C + G C P C C G+ G CE
Sbjct: 430 CRHGGVCVRPNKCLCKKGYLGPQCE 454
Score = 49.2 bits (117), Expect = 3e-08
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
C C G++G +C TA C P C + G C P C C G+ G CE
Sbjct: 410 CCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 454
Score = 48.0 bits (114), Expect = 7e-08
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 4 CPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWC 63
C Q T+ C C NG CT G C C PG++G C C+ C +GG C
Sbjct: 381 CRATVQPAQTLTSECSRLC-RNGYCTPTGKCCCSPGWEGDFCRTAK---CEPACRHGGVC 436
Query: 64 DSQQMCQCPKGYQGTYC 80
C C KGY G C
Sbjct: 437 VRPNKCLCKKGYLGPQC 453
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 51.4 bits (124), Expect = 9e-10
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ---MCQCPKGY 75
C + G C C C G+ G CE C N C Q C C GY
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 76 QGTYCGTAM--CFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCE 113
+G +C C CL+NG C C CP GF G C+
Sbjct: 75 EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 118
Score = 44.5 bits (106), Expect = 4e-07
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 2 CQCPKGYQGTYCGTAM--CFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCDQ 55
CQC +GY G C + C C N+ TC C C PG++G+HCE
Sbjct: 30 CQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASS 89
Query: 56 KCSNGGWCDSQQ---MCQCPKGYQGTYC 80
C + G C + C+CP G+ G C
Sbjct: 90 PCLHNGRCLDKINEFQCECPTGFTGHLC 117
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 51.2 bits (122), Expect = 7e-09
Identities = 25/131 (19%), Positives = 32/131 (24%), Gaps = 22/131 (16%)
Query: 2 CQCPKGYQGTYCGTA----------MCFPQCLNNGTCTAPGVCSCPPGFQGLHCE----- 46
C C G G C +G C+ G C C + G +C
Sbjct: 506 CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS-CGDCLCDSDWTGYYCNCTTRT 564
Query: 47 GGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGT-AMCFPQCLNNGTCTAPGVCSCPP 105
CS G C+ G G C C C C C
Sbjct: 565 DTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC-----VECKK 619
Query: 106 GFQGLHCEGGT 116
+G + T
Sbjct: 620 FDRGALHDENT 630
Score = 48.9 bits (116), Expect = 4e-08
Identities = 24/119 (20%), Positives = 32/119 (26%), Gaps = 18/119 (15%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCL--------NNGTCTAPGVCSCPPGFQGLHCEGGPGPGC 53
C C + G YC C+ G C PG G CE P C
Sbjct: 547 CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCE--KCPTC 604
Query: 54 DQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHC 112
C+ C +C K +G C C + G ++C
Sbjct: 605 PDACTFKKEC-----VECKKFDRGALHDENTCNRYCRDEIES---VKELKDTGKDAVNC 655
Score = 45.5 bits (107), Expect = 6e-07
Identities = 27/125 (21%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 10 GTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE-----GGPGPGCDQKCSNGGWCD 64
+C N GVC C PG+ G CE P + G
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVC 495
Query: 65 SQQ------MCQCPKGYQGTYCGTA----------MCFPQCLNNGTCTAPGVCSCPPGFQ 108
SQ+ C C G G C +G C+ G C C +
Sbjct: 496 SQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS-CGDCLCDSDWT 554
Query: 109 GLHCE 113
G +C
Sbjct: 555 GYYCN 559
Score = 34.7 bits (79), Expect = 0.003
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 17/130 (13%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE---GGPGPGCDQKC 57
+ C + + T G C+ +C
Sbjct: 389 LKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRC 448
Query: 58 SNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAP--------------GVCSC 103
+NG +C+C G+ G+ C + + C+ G C C
Sbjct: 449 NNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVC 508
Query: 104 PPGFQGLHCE 113
G
Sbjct: 509 HSSDFGKITG 518
Score = 31.2 bits (70), Expect = 0.061
Identities = 19/103 (18%), Positives = 24/103 (23%), Gaps = 7/103 (6%)
Query: 18 CFPQCLNNGTCTAPGVCSCPPGFQGLHC-------EGGPGPGCDQKCSNGGWCDSQQMCQ 70
CLNN C + G+ DS +
Sbjct: 370 FNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQV 429
Query: 71 CPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
+C N GVC C PG+ G CE
Sbjct: 430 TFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 48.8 bits (115), Expect = 2e-08
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C G T + + C C NGG
Sbjct: 107 FPCLGXQDGVAAFEVDVIVMNSEGNTI-------LXTPQNAIFFKTCQQAECPGGCRNGG 159
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQC 89
+C+ +++C+CP G+ G +C
Sbjct: 160 FCNERRICECPDGFHGPHCEGTKHHHHH 187
Score = 46.4 bits (109), Expect = 1e-07
Identities = 23/114 (20%), Positives = 26/114 (22%), Gaps = 21/114 (18%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNG 60
+ G CL A S G
Sbjct: 88 VNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVM-----------------NSEG 130
Query: 61 GWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEG 114
+ C A C C N G C +C CP GF G HCEG
Sbjct: 131 NTI----LXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEG 180
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 47.0 bits (112), Expect = 5e-08
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 33/125 (26%)
Query: 22 CLNNGTCTAPGV-----CSCPPGFQGLHCEGGPGPGCDQK------------CSNGGWCD 64
C N G C C CP GF +C D++ C NGG C+
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 65 SQQM----------CQCPKGYQGTYCGTAM--CFPQ-CLNNGTCTAPG---VCSCPPGFQ 108
+ C+CP+G+ G +C + C + C N G CT C CP F
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFM 127
Query: 109 GLHCE 113
G +C+
Sbjct: 128 GRNCQ 132
Score = 38.5 bits (90), Expect = 8e-05
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 28/119 (23%)
Query: 2 CQCPKGYQGTYCGTAMCFPQ---------------CLNNGTCTAPG----------VCSC 36
C+CP G+ C + + C N GTC VC C
Sbjct: 25 CECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKC 84
Query: 37 PPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ---MCQCPKGYQGTYCGTAMCFPQCLNN 92
P GF G+HC+ + C NGG C C+CP + G C ++
Sbjct: 85 PRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHHHHHH 143
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 43.9 bits (104), Expect = 2e-06
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE-------GGPGPGCDQKCSNGGWCDSQQMCQC 71
CL+NG+C C+C PG++G +CE GC C G C C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG---QESYTCSC 69
Query: 72 PKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCP 104
+GY+ G T+
Sbjct: 70 AQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
Score = 30.4 bits (69), Expect = 0.11
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
CL+NG+C C+C PG++G +CE
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCE 40
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 44.1 bits (103), Expect = 2e-06
Identities = 20/109 (18%), Positives = 25/109 (22%), Gaps = 3/109 (2%)
Query: 8 YQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQ- 66
G C + C C G C + S G +
Sbjct: 289 SDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPK 348
Query: 67 -QMCQCPKGYQGTYCGTAMC-FPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
C C N GTC C CP + G+ CE
Sbjct: 349 GAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCE 397
Score = 40.2 bits (93), Expect = 5e-05
Identities = 26/117 (22%), Positives = 37/117 (31%), Gaps = 12/117 (10%)
Query: 2 CQCPKGYQGTYCGT--AMCFPQCLNNGTCTAPGV---CSCPPGFQGLHCEGGPGPGCDQK 56
C+C G CG + + G+ +C P +
Sbjct: 315 CECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLH-- 372
Query: 57 CSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTC-TAPGVCSCPPGFQGLHC 112
C NGG C + C CP Y G C +C G+C + G + P G H
Sbjct: 373 CQNGGTCHNNVRCLCPAAYTGILCEK----LRCEEAGSCGSDSGQGAPPHGTHHHHH 425
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 42.3 bits (100), Expect = 3e-06
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 9/89 (10%)
Query: 34 CSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQM---CQCPKGYQGTYCGTAM--CFPQ 88
+ + C NGG C C C G++G C
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 89 CLNNGTCTAPGV----CSCPPGFQGLHCE 113
C CSC G++ +
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPDQ 121
Score = 41.6 bits (98), Expect = 7e-06
Identities = 20/113 (17%), Positives = 28/113 (24%), Gaps = 12/113 (10%)
Query: 2 CQCPKGYQGTYCGTAMC---FPQCLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCDQ 55
K + CLN G C C C GF+G +CE
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 56 KCSNGGWCDSQQ---MCQCPKGYQGTYCGTAM--CFPQ-CLNNGTCTAPGVCS 102
+C C GY+ + P C +P +
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLT 145
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 40.7 bits (96), Expect = 1e-05
Identities = 16/105 (15%), Positives = 24/105 (22%), Gaps = 13/105 (12%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ---MCQCPKGY 75
C+ + + C N G C C C +G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 76 QGTYCGTAM----CFPQCLNNGTCTAPG---VCSCPPGFQGLHCE 113
+G C + C VCSC G+
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG 116
Score = 38.0 bits (89), Expect = 1e-04
Identities = 24/107 (22%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 2 CQCPKGYQGTYCGTAM--CFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCDQ 55
K + C C N G C C+C GF+G +CE C
Sbjct: 27 EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL 86
Query: 56 K-CSNGGWCDSQQ---MCQCPKGYQGTYCGTAM--CFPQ-CLNNGTC 95
+C +Q +C C +GY G A P C
Sbjct: 87 DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 40.8 bits (95), Expect = 3e-05
Identities = 42/136 (30%), Positives = 50/136 (36%), Gaps = 25/136 (18%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCT-APGVCSCPPGFQGLHCE-----GGPGPGCD 54
+ +C G C C+NNG C G C CPPGF G CE G C
Sbjct: 186 VRRCEAQKWGPECNH--LCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCK 243
Query: 55 QKCSNGGWCDSQQM-------CQCPKGYQGTYCGTA----------MCFPQCLNNGTCTA 97
++CS C S C C G++G C A C N C
Sbjct: 244 ERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR 303
Query: 98 PGVCSCPPGFQGLHCE 113
C C PG+QGL CE
Sbjct: 304 FQGCLCSPGWQGLQCE 319
Score = 31.2 bits (70), Expect = 0.058
Identities = 29/128 (22%), Positives = 34/128 (26%), Gaps = 23/128 (17%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
G Y + L T V C G C C N G
Sbjct: 157 PHAQPQDAGVYSARYIG--GNLFTSAFTRLIVRRCEAQKWGPECNHLCTA-----CMNNG 209
Query: 62 WCDSQQ-MCQCPKGYQGTYCGTA--------------MCFPQCLNNGTCTA-PGVCSCPP 105
C C CP G+ G C A C + C P CSC
Sbjct: 210 VCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCAT 269
Query: 106 GFQGLHCE 113
G++GL C
Sbjct: 270 GWKGLQCN 277
Score = 29.3 bits (65), Expect = 0.24
Identities = 23/105 (21%), Positives = 27/105 (25%), Gaps = 8/105 (7%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
C G+ G C C N C C C PG+QGL CE P
Sbjct: 278 EACHPGFYGPDCKLR---CSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRM-----TPK 329
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPG 106
D + G C + T P P
Sbjct: 330 IVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPK 374
Score = 27.4 bits (60), Expect = 1.2
Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 33 VCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNN 92
+ P G++ + +C G C C+NN
Sbjct: 156 LPHAQPQDAGVYS-----ARYIGGNLFTSAFTRLIVRRCEAQKWGPECNH--LCTACMNN 208
Query: 93 GTCT-APGVCSCPPGFQGLHCE 113
G C G C CPPGF G CE
Sbjct: 209 GVCHEDTGECICPPGFMGRTCE 230
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 38.9 bits (89), Expect = 2e-04
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 18 CFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGW-CDSQQMCQCPKGYQ 76
C C +G C G C C + GL+C+ Q N +Q G
Sbjct: 537 CLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKL 595
Query: 77 GTYCGTAMCFPQCLNNGTCTA 97
T CG +G C+
Sbjct: 596 STVCGAVASGLALHFSGGCSR 616
Score = 31.2 bits (69), Expect = 0.058
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 50 GPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNG 93
GP C++ C G C + C C GY G C + P L +
Sbjct: 185 GPQCEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNPDFLKDD 228
Score = 30.4 bits (67), Expect = 0.10
Identities = 12/59 (20%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 45 CEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSC 103
G GC CS G C C C + + G YC
Sbjct: 529 DNVYIGDGCLDMCSGHGRCVQGS-CVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQN 586
Score = 30.4 bits (67), Expect = 0.11
Identities = 16/65 (24%), Positives = 22/65 (33%)
Query: 18 CFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQG 77
C C +G+C C C PG+ G C+ K G +S + G
Sbjct: 188 CEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNPDFLKDDFEGQLESDRFLLMSGGKPS 247
Query: 78 TYCGT 82
CG
Sbjct: 248 RKCGI 252
Score = 28.8 bits (63), Expect = 0.40
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 85 CFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
C C +G+C C C PG+ G C+
Sbjct: 188 CEEMCYGHGSCINGTKCICDPGYSGPTCK 216
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 62 WCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
+ Q Y G C C +G C G C C + GL+C+
Sbjct: 515 HQPAPFDKQQTWAIDNVYIGDG-CLDMCSGHGRCVQ-GSCVCDEQWGGLYCD 564
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 35.0 bits (81), Expect = 0.001
Identities = 18/93 (19%), Positives = 22/93 (23%), Gaps = 13/93 (13%)
Query: 34 CSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ---MCQCPKGYQGTYCGTAM--CFPQ 88
C NGG C Q +C C ++G C T
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC 91
Query: 89 CLNNGTCTAPGV--------CSCPPGFQGLHCE 113
NG C C C G+ L
Sbjct: 92 VNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG 124
Score = 34.6 bits (80), Expect = 0.002
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 2 CQCPKGYQGTYCGTAM--CFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCDQ 55
+ + C C N G+C +C C P F+G +CE
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC 91
Query: 56 KCSNGGWC-------DSQQMCQCPKGYQGTYCGT 82
NGG +++ C+C +GY G
Sbjct: 92 VNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 35.1 bits (81), Expect = 0.002
Identities = 25/127 (19%), Positives = 34/127 (26%), Gaps = 16/127 (12%)
Query: 2 CQCPKGYQGTYCGTAM--CFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCDQ 55
K + C C N G C C+C GF+G +CE C
Sbjct: 27 EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL 86
Query: 56 K-CSNGGWCDSQQ---MCQCPKGYQGTYCGTAM--CFPQ-CLNNGTCTAPG---VCSCPP 105
+C +Q +C C +GY G A P C +
Sbjct: 87 DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSS 146
Query: 106 GFQGLHC 112
G
Sbjct: 147 GEAPDSI 153
Score = 34.7 bits (80), Expect = 0.002
Identities = 16/105 (15%), Positives = 24/105 (22%), Gaps = 13/105 (12%)
Query: 22 CLNNGTC---TAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ---MCQCPKGY 75
C+ + + C N G C C C +G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 76 QGTYCGTAM----CFPQCLNNGTCTAPG---VCSCPPGFQGLHCE 113
+G C + C VCSC G+
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG 116
Score = 28.2 bits (63), Expect = 0.48
Identities = 17/123 (13%), Positives = 24/123 (19%), Gaps = 14/123 (11%)
Query: 2 CQCPKGYQGTYCGTAM----CFPQCLNNGTCTAPG---VCSCPPGFQGLHCEGGPGPGCD 54
C C +G++G C + C VCSC G+ P
Sbjct: 65 CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
Query: 55 QKCSNGGWCDSQQ---MCQCPKGYQGTYCGTAM---CFPQ-CLNNGTCTAPGVCSCPPGF 107
C ++ G N G
Sbjct: 125 YPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGD 184
Query: 108 QGL 110
L
Sbjct: 185 NNL 187
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 33.0 bits (74), Expect = 0.015
Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 11/81 (13%)
Query: 33 VCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNN 92
V CP + G CD CQ C N
Sbjct: 403 VRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCA--CQAQAEPNSHRC--------NNGN 452
Query: 93 GTCTAPGVCSCPPGFQGLHCE 113
GT GVC C PG+ G CE
Sbjct: 453 GTFEC-GVCRCGPGWLGSQCE 472
Score = 28.3 bits (62), Expect = 0.59
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 22 CLNNGTCTAPGVCSCPPGFQGLHCE 46
NGT GVC C PG+ G CE
Sbjct: 449 NNGNGTFEC-GVCRCGPGWLGSQCE 472
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 32.2 bits (72), Expect = 0.025
Identities = 13/51 (25%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 63 CDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
+ +C C G GVCSC PG G CE
Sbjct: 449 VELHTLCDCNCSDTQPQAP-----HCSDGQGHLQC-GVCSCAPGRLGRLCE 493
Score = 31.1 bits (69), Expect = 0.069
Identities = 13/46 (28%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 46
+C C G GVCSC PG G CE
Sbjct: 454 LCDCNCSDTQPQAP-----HCSDGQGHLQC-GVCSCAPGRLGRLCE 493
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.9 bits (72), Expect = 0.035
Identities = 13/55 (23%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 45 CEGGPGPGCDQKCSNGGWC---DSQQMCQCPK-GYQGTYCGTAMCFPQCLNNGTC 95
CEG + CSN G C C C + G C G
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQ 235
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.8 bits (67), Expect = 0.082
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 2 CQCPKGYQGTYCGTAM-CFPQ-CLNNGTCTAPG-----VCSCPPGFQGLHCE 46
C C G + C C N GTC VC CP GF G CE
Sbjct: 34 CWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 29.8 bits (67), Expect = 0.082
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 69 CQCPKGYQGTYCGTAM-CFPQ-CLNNGTCTAPG-----VCSCPPGFQGLHCE 113
C C G + C C N GTC VC CP GF G CE
Sbjct: 34 CWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 30.3 bits (68), Expect = 0.11
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 21 QCLNNGTCT-----APGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQM-----CQ 70
C +G C + P + G GP + + D QM C+
Sbjct: 343 LCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLE--DQAQMAVEFKCR 400
Query: 71 CPKGYQGTYC 80
C G+Q +C
Sbjct: 401 CYPGWQAPWC 410
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.5 bits (68), Expect = 0.11
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 45 CEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCS-- 102
C G GC QKC C C GY+ T G C + C G CS
Sbjct: 6 CNVNNG-GCAQKCQM---IRGAVQCTCHTGYRLTEDGR-----TCQDVNECAEEGYCSQG 56
Query: 103 CPPGFQGLHCE 113
C C
Sbjct: 57 CTNSEGAFQCW 67
Score = 27.4 bits (60), Expect = 1.2
Identities = 18/102 (17%), Positives = 23/102 (22%), Gaps = 11/102 (10%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCS--CPPGFQGLHCEGGPG----PGCD 54
C C GY+ T G C + C G CS C C G P
Sbjct: 25 QCTCHTGYRLTEDGR-----TCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRR 79
Query: 55 QKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCT 96
+ G + + L N
Sbjct: 80 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIAL 121
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 28.2 bits (64), Expect = 0.11
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCT---APGVCSCPPGFQGLHCE 46
CLN G+C C CP GF+G +CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 28.2 bits (64), Expect = 0.11
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCT---APGVCSCPPGFQGLHCE 113
CLN G+C C CP GF+G +CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 29.8 bits (67), Expect = 0.16
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 13/109 (11%)
Query: 20 PQCLNNGTCTAPG----------VCSCPPGFQGLHCEGGPGPGCDQKC-SNGGWCDSQQM 68
P+ L+ T + +C G+Q L C +G W +
Sbjct: 6 PKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQ-LIEGNQVLHSFTAVCQDDGTWHRAMPR 64
Query: 69 CQCPK-GYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGT 116
C+ G + + T A C + + G+
Sbjct: 65 CKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGS 113
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 29.7 bits (66), Expect = 0.17
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 3 QCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQ----GLHCEGGPGPGCDQ 55
+ P C CL + C+CP G + G C+ G
Sbjct: 262 RQPNATNPCGIDNGGCSHLCLMSP-VKPFYQCACPTGVKLLENGKTCK--DGNSHHH 315
Score = 28.5 bits (63), Expect = 0.51
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 70 QCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQ----GLHCEGG 115
+ P C CL + C+CP G + G C+ G
Sbjct: 262 RQPNATNPCGIDNGGCSHLCLMSP-VKPFYQCACPTGVKLLENGKTCKDG 310
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 29.6 bits (65), Expect = 0.19
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 15 TAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDS-QQMCQCPK 73
+ C C +G C + GVC C G+ + + +
Sbjct: 191 SEPCPSYCSGHGDCIS-GVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITG 249
Query: 74 GYQGTYCGTAM 84
G GT CGT
Sbjct: 250 GQVGTGCGTLN 260
Score = 28.5 bits (62), Expect = 0.44
Identities = 13/66 (19%), Positives = 14/66 (21%), Gaps = 1/66 (1%)
Query: 50 GPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQG 109
C CS G C S C C GY P + G
Sbjct: 191 SEPCPSYCSGHGDCISGV-CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITG 249
Query: 110 LHCEGG 115
G
Sbjct: 250 GQVGTG 255
Score = 26.2 bits (56), Expect = 3.0
Identities = 9/53 (16%), Positives = 10/53 (18%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCD 54
C C GY P + G G G D
Sbjct: 209 CFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLND 261
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 28.9 bits (65), Expect = 0.20
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 53 CDQKCSNGGWC---DSQQMCQCPKGYQGTYCGTAMCFPQCL-----NNGTCTAPG---VC 101
C C G C C C G++G +C + F C C C
Sbjct: 18 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRC 77
Query: 102 SCPPGFQGLHCE 113
SC PG++
Sbjct: 78 SCAPGYKLGDDL 89
Score = 27.8 bits (62), Expect = 0.51
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 14/76 (18%)
Query: 18 CFPQCLNNGTCTAPG---VCSCPPGFQGLHCEGGPGP--------GCDQKCSNGGWCDSQ 66
C C +GTC C C G++G C+ GC C
Sbjct: 18 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEE---VGW 74
Query: 67 QMCQCPKGYQGTYCGT 82
+ C C GY+
Sbjct: 75 RRCSCAPGYKLGDDLL 90
Score = 26.6 bits (59), Expect = 1.2
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCL-----NNGTCTAPG---VCSCPPGFQGLHCEGGPGPGC 53
C C G++G +C + F C C CSC PG++ P
Sbjct: 37 CDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96
Query: 54 DQKCSNGGWC 63
C
Sbjct: 97 KFPCGRPWKR 106
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 29.8 bits (66), Expect = 0.22
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 33 VCSCPPGFQGLHCEGGPGPGCDQKCSNGGWC---DSQQMCQCPK-GYQGTYCGTAM 84
+ PP G G C NGG C D Q +C C + G++G C
Sbjct: 174 LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGK 229
Score = 27.9 bits (61), Expect = 0.86
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 11/87 (12%)
Query: 34 CSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQ---CL 90
F+G + +G + P G A + CL
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK----LDDEPPNSGGGSPCEAGEEGEGGVCL 199
Query: 91 NNGTCTAP---GVCSCP-PGFQGLHCE 113
N G C+ VC C GF+G C
Sbjct: 200 NGGVCSVVDDQAVCDCSRTGFRGKDCS 226
Score = 25.2 bits (54), Expect = 7.1
Identities = 8/70 (11%), Positives = 13/70 (18%), Gaps = 3/70 (4%)
Query: 29 TAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCD---SQQMCQCPKGYQGTYCGTAMC 85
G + P C N G C ++ +C C
Sbjct: 599 RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 658
Query: 86 FPQCLNNGTC 95
+
Sbjct: 659 TVLSYDGSMF 668
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.5 bits (64), Expect = 0.34
Identities = 6/76 (7%), Positives = 10/76 (13%), Gaps = 3/76 (3%)
Query: 34 CSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNG 93
C C + C C+ +
Sbjct: 26 CECSSESTLDPTKTICIETIKGTCWQTVID---GRCEININGATLKSQCCSSLGAAWGSP 82
Query: 94 TCTAPGVCSCPPGFQG 109
C G+
Sbjct: 83 CTLCQVDPICGKGYSR 98
Score = 27.3 bits (61), Expect = 0.85
Identities = 20/119 (16%), Positives = 23/119 (19%), Gaps = 16/119 (13%)
Query: 2 CQCPKGYQGTYCGTAM--CFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSN 59
C+C T + C G C+
Sbjct: 26 CECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTL 85
Query: 60 GGWCDSQQMCQCPKGYQGTYCGTA------MCFPQCLNNGTCT-APG--VCSCPPGFQG 109
C KGY FP NG C G C CP G
Sbjct: 86 CQVD-----PICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 28.7 bits (63), Expect = 0.39
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 45 CEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTC 95
C G GC C++ C CP G+Q +C + TC
Sbjct: 3 CLDNNG-GCSHVCNDLKIG---YECLCPDGFQLVAQRRCEDIDECQDPDTC 49
Score = 26.3 bits (57), Expect = 2.5
Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 5/92 (5%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNNGTCT-----APGVCSCPPGFQGLHCEGGPGPGCDQK 56
C CP G+Q +C + TC+ G C
Sbjct: 23 CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 82
Query: 57 CSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQ 88
+ + + ++ +
Sbjct: 83 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 28.4 bits (62), Expect = 0.52
Identities = 15/96 (15%), Positives = 22/96 (22%), Gaps = 9/96 (9%)
Query: 14 GTAMCFPQCLNNGTCTA-PGVC----SCPPGFQGLHCEGGPGP---GCDQKCSNGGWCDS 65
C N+ C+ C CE C C +
Sbjct: 46 QNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILL 105
Query: 66 QQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVC 101
+ CP + A C C + C+ C
Sbjct: 106 VKQGDCPAP-EKASGFAAACVESCEVDNECSGVKKC 140
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 27.8 bits (61), Expect = 0.78
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 18 CFPQCLNNGTCTAPGV----CSCPP-GFQGLHCE 46
C C N G C + G C C GF G +C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 27.8 bits (61), Expect = 0.78
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 85 CFPQCLNNGTCTAPGV----CSCPP-GFQGLHCE 113
C C N G C + G C C GF G +C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 27.4 bits (60), Expect = 1.1
Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 11/117 (9%)
Query: 3 QCPKGYQGTYCGTAMCFPQCLNNGTCTAP-----GVCSCPPGFQGLHCEGGPGPGCDQKC 57
Y +C + + +C+C G+ CE D+
Sbjct: 238 VLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPW 297
Query: 58 SNGGWCDSQQMCQCPKGYQGTYCGTAM-CFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
+ + C + C + + G C +C G CE
Sbjct: 298 RRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHC-----TNCRDNTDGAKCE 349
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 27.1 bits (59), Expect = 1.6
Identities = 19/98 (19%), Positives = 24/98 (24%), Gaps = 21/98 (21%)
Query: 12 YCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQC 71
+ C G G+C C G+ G +CE C G + C
Sbjct: 188 CRDQSRDRSLCHGKGFLEC-GICRCDTGYIGKNCE----------CQTQGRSSQELEGSC 236
Query: 72 PKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQG 109
K C G C G C C
Sbjct: 237 RKDNNS---------IICSGLGDCVC-GQCLCHTSDVP 264
Score = 26.4 bits (57), Expect = 2.5
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 44 HCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSC 103
C C G+ + +C+C GY G C +C G + SC
Sbjct: 185 ECRCRDQSRDRSLCHGKGFLECG-ICRCDTGYIGKNC-------ECQTQGRSSQELEGSC 236
Query: 104 PPGFQGLHCEG 114
+ C G
Sbjct: 237 RKDNNSIICSG 247
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 27.0 bits (59), Expect = 1.6
Identities = 26/126 (20%), Positives = 30/126 (23%), Gaps = 38/126 (30%)
Query: 3 QCPKGYQGTYCGTAMCFPQCLNNGTCTAP---------GVCSCPPGFQGLHCEGGPGPGC 53
C +G+ C N T P G C C G C+
Sbjct: 422 VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCD------- 474
Query: 54 DQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFP------QCLNNGTCTAPGVCSCPPGF 107
QC + G C P LNN G CSC P
Sbjct: 475 ----------------QCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHM 518
Query: 108 QGLHCE 113
G C
Sbjct: 519 IGRQCN 524
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 26.7 bits (59), Expect = 1.6
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 58 SNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCE 113
+ G W D C K C TA C C G C CSC PGF G CE
Sbjct: 100 APGKWNDEH--CLKKKHA---LCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 26.7 bits (59), Expect = 1.7
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 13 CGTAMCFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C TA C C G C CSC PGF G CE
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 27.1 bits (59), Expect = 1.7
Identities = 18/116 (15%), Positives = 29/116 (25%), Gaps = 9/116 (7%)
Query: 3 QCPKGYQGTYCGTAMCFPQCLN-NGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGG 61
CP Y + F C + + C C C +C +G
Sbjct: 240 TCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI-------HNNKCIPECPSGY 292
Query: 62 W-CDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGT 116
S +C G C + + C+ G ++ GG
Sbjct: 293 TMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGN 348
Score = 26.0 bits (56), Expect = 3.9
Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 3/109 (2%)
Query: 2 CQCPKGYQGTYCGTAMCFPQCLNN-GTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNG 60
+ + C C + C +C P C N
Sbjct: 172 TVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNF 231
Query: 61 GWCDSQQMCQCPKGYQGTYCGTAMCFPQCLN-NGTCTAPGVCSCPPGFQ 108
+ D + + CP Y + F C + + C C
Sbjct: 232 -YLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI 279
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 26.7 bits (59), Expect = 1.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 13 CGTAMCFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C TA C P C +G C C+C G+ G C+
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 26.7 bits (59), Expect = 1.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 80 CGTAMCFPQ-CLNNGTCTAPG---VCSCPPGFQGLHCE 113
C TA C P C +G C C+C G+ G C+
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 25.2 bits (55), Expect = 4.5
Identities = 11/42 (26%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 50 GPGCDQKCSNGGWCDSQQM---CQCPKGYQGTYCGTAMCFPQ 88
CS G C C C GY G C P+
Sbjct: 120 ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQVDPR 161
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 26.9 bits (59), Expect = 1.8
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 18 CFPQCLNNGTCTAPGV----CSC-PPGFQGLHCE 46
C+ C + G C G+ C C G+ G +C
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
Score = 26.9 bits (59), Expect = 1.8
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 85 CFPQCLNNGTCTAPGV----CSC-PPGFQGLHCE 113
C+ C + G C G+ C C G+ G +C
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 26.5 bits (59), Expect = 1.9
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 24 NNGTCTA-PGVCSCPPGFQGLHCEG 47
N C GVCSC + C
Sbjct: 1 NEALCKKDGGVCSCNNNKNSVDCSS 25
Score = 26.5 bits (59), Expect = 1.9
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 91 NNGTCTA-PGVCSCPPGFQGLHCEG 114
N C GVCSC + C
Sbjct: 1 NEALCKKDGGVCSCNNNKNSVDCSS 25
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 26.5 bits (58), Expect = 2.1
Identities = 29/117 (24%), Positives = 37/117 (31%), Gaps = 15/117 (12%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGG----PGPGCDQK 56
+C+C GY G C +C G + SC + C G G
Sbjct: 108 ICRCDTGYIGKNC-------ECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHT 160
Query: 57 CSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
G Q C+C Y G G C G C C PGF+G C+
Sbjct: 161 SDVPGKLIYGQYCECDTINCERYNG---QVCGGPGRGLCFC-GKCRCHPGFEGSACQ 213
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 26.3 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 16 AMCFPQCLNNGTCTAPG---VCSCPPGFQGLHCE 46
A C +G C C C PGF GL CE
Sbjct: 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 26.3 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 83 AMCFPQCLNNGTCTAPG---VCSCPPGFQGLHCE 113
A C +G C C C PGF GL CE
Sbjct: 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 26.4 bits (57), Expect = 2.5
Identities = 17/111 (15%), Positives = 23/111 (20%), Gaps = 5/111 (4%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNG 60
C +C QC +P C Q GP C
Sbjct: 174 SCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHN---QCAAGCTGPRESDCLVCRK- 229
Query: 61 GWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLH 111
++ CP T + A V CP +
Sbjct: 230 FRDEATCKDTCPPLMLY-NPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTD 279
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 24.8 bits (54), Expect = 2.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 22 CLNNGTCTAPG-----VCSCPPGFQGLHCE 46
CLN G C C+C G+ G C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 24.8 bits (54), Expect = 2.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 89 CLNNGTCTAPG-----VCSCPPGFQGLHCE 113
CLN G C C+C G+ G C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>1oao_A CODH, carbon monoxide dehydrogenase/acetyl-COA synthase beta;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A
Length = 674
Score = 26.5 bits (58), Expect = 2.7
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 66 QQMCQCPKGYQGTYC-GTAMCFPQCLNNGTCTAPGVC 101
Q QC GY+G C + + G+C
Sbjct: 54 AQQPQCKIGYEGICCRFCMAGPCRIKATDGPGSRGIC 90
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 26.3 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 17 MCFPQCLNNGTCT-----APG--VCSCPPGFQ 41
P NG C+ P C+CP GF+
Sbjct: 577 GSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608
Score = 26.3 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 84 MCFPQCLNNGTCT-----APG--VCSCPPGFQ 108
P NG C+ P C+CP GF+
Sbjct: 577 GSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608
Score = 24.8 bits (53), Expect = 8.7
Identities = 11/93 (11%), Positives = 22/93 (23%)
Query: 8 YQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ 67
P ++NG C+ + S F C G + K G +
Sbjct: 262 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321
Query: 68 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGV 100
+ + + + A +
Sbjct: 322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAI 354
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 24.5 bits (53), Expect = 3.3
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 16/54 (29%)
Query: 67 QMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGV-------CSCPPGFQGLHCE 113
+CP+ + YC LN+ C A + C C GF G CE
Sbjct: 3 PTYKCPETFDAWYC---------LNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 24.5 bits (53), Expect = 4.3
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 16/53 (30%)
Query: 1 MCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGV-------CSCPPGFQGLHCE 46
+CP+ + YC LN+ C A + C C GF G CE
Sbjct: 4 TYKCPETFDAWYC---------LNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 25.9 bits (56), Expect = 4.4
Identities = 11/57 (19%), Positives = 13/57 (22%), Gaps = 12/57 (21%)
Query: 3 QCPKGYQGTYCGTAMCFPQCLNNGTC--------TAPGVCSCPPGFQ----GLHCEG 47
+ P +NG C CSCP L C G
Sbjct: 564 SDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620
Score = 25.9 bits (56), Expect = 4.4
Identities = 11/57 (19%), Positives = 13/57 (22%), Gaps = 12/57 (21%)
Query: 70 QCPKGYQGTYCGTAMCFPQCLNNGTC--------TAPGVCSCPPGFQ----GLHCEG 114
+ P +NG C CSCP L C G
Sbjct: 564 SDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 25.5 bits (55), Expect = 4.8
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 43 LHCEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQGTYC 80
+ CS G C ++ C C + + G+ C
Sbjct: 442 FNFSTCLSSKEGTICSGNGVCSNELKCVCNRHWIGSDC 479
Score = 25.1 bits (54), Expect = 6.1
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 56 KCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCE 113
C C + C + + C ++ C NG C+ C C + G C
Sbjct: 424 PCGPQMMCLEHR-CLPVASFNFSTCLSSKEGTICSGNGVCSNELKCVCNRHWIGSDCN 480
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 24.0 bits (52), Expect = 4.8
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 22 CLNNGTCTAPG-----VCSCPPGFQGLHCE 46
CL++G C C+C G+ G C+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 24.0 bits (52), Expect = 4.8
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 89 CLNNGTCTAPG-----VCSCPPGFQGLHCE 113
CL++G C C+C G+ G C+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 25.4 bits (56), Expect = 5.1
Identities = 13/64 (20%), Positives = 17/64 (26%), Gaps = 7/64 (10%)
Query: 45 CEGGPGPGCDQKCSNGGWCDSQQMCQCPKGYQ----GTYCGTAMCFPQCLNNGTCTAPGV 100
C GC C G C C +GY+ C + AP +
Sbjct: 5 CHPERTDGCQHFCLPG---QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 61
Query: 101 CSCP 104
P
Sbjct: 62 QDLP 65
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 24.4 bits (53), Expect = 9.0
Identities = 11/57 (19%), Positives = 16/57 (28%)
Query: 52 GCDQKCSNGGWCDSQQMCQCPKGYQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQ 108
GC + C C + C+C G+ C + C SC
Sbjct: 4 GCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSD 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.144 0.563
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,836,633
Number of extensions: 109186
Number of successful extensions: 1933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 608
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)