RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6687
(116 letters)
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 26.2 bits (58), Expect = 0.22
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
CLN G+C C CP GF+G +CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 26.2 bits (58), Expect = 0.22
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
CLN G+C C CP GF+G +CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 25.8 bits (57), Expect = 0.30
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C N G C C+C GF+G +CE
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
Score = 25.8 bits (57), Expect = 0.30
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
C N G C C+C GF+G +CE
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 25.4 bits (56), Expect = 0.39
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C N+ TC C C PG++G+HCE
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCE 36
Score = 25.4 bits (56), Expect = 0.39
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
C N+ TC C C PG++G+HCE
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCE 36
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 25.0 bits (55), Expect = 0.61
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C N G+C +C C P F+G +CE
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNCE 37
Score = 25.0 bits (55), Expect = 0.61
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
C N G+C +C C P F+G +CE
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNCE 37
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 24.7 bits (54), Expect = 0.90
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C + G C C C G+ G CE
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCE 40
Score = 24.7 bits (54), Expect = 0.90
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
C + G C C C G+ G CE
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCE 40
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.2 bits (53), Expect = 0.96
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
CL+NG C C CP GF G C+
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLCQ 35
Score = 24.2 bits (53), Expect = 0.96
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
CL+NG C C CP GF G C+
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLCQ 35
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 24.3 bits (53), Expect = 1.0
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C +G C C C PGF GL CE
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGLKCE 36
Score = 24.3 bits (53), Expect = 1.0
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
C +G C C C PGF GL CE
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGLKCE 36
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 24.0 bits (52), Expect = 1.2
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 22 CLNNGTCTAPG---VCSCPPGFQGLHCE 46
C G C CSC PGF G CE
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 24.0 bits (52), Expect = 1.2
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 89 CLNNGTCTAPG---VCSCPPGFQGLHCE 113
C G C CSC PGF G CE
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECE 36
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 24.1 bits (52), Expect = 1.9
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 11 TYCGTAMCFPQ-CLNNGTCTAPG-----VCSCPPGFQGLHCE 46
+Y G + CLN G C C+C G+ G C+
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 24.1 bits (52), Expect = 1.9
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 78 TYCGTAMCFPQ-CLNNGTCTAPG-----VCSCPPGFQGLHCE 113
+Y G + CLN G C C+C G+ G C+
Sbjct: 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 23.6 bits (51), Expect = 2.1
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 22 CLNNGTCTAPGV----CSCPPGFQGLHCE 46
C + C C G+ G CE
Sbjct: 15 CFHGTCRFLVQEDKPACVCHSGYVGARCE 43
Score = 23.6 bits (51), Expect = 2.1
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 89 CLNNGTCTAPGV----CSCPPGFQGLHCE 113
C + C C G+ G CE
Sbjct: 15 CFHGTCRFLVQEDKPACVCHSGYVGARCE 43
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 23.4 bits (50), Expect = 2.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 21 QCLNNGTCTAPGV------CSCPPGFQGLHCE 46
CLN GTC + C+CP F G HCE
Sbjct: 3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 34
Score = 23.4 bits (50), Expect = 2.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 88 QCLNNGTCTAPGV------CSCPPGFQGLHCE 113
CLN GTC + C+CP F G HCE
Sbjct: 3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 34
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 23.6 bits (51), Expect = 2.4
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 22 CLNNGTCTAPG----VCSCPPGFQGLHCE 46
C+ C C G+ G CE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCE 44
Score = 23.6 bits (51), Expect = 2.4
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 89 CLNNGTCTAPG----VCSCPPGFQGLHCE 113
C+ C C G+ G CE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCE 44
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 24.8 bits (54), Expect = 3.6
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 15/44 (34%)
Query: 66 QQMCQCPKGYQGTYCGTAMCFPQCLNNGTC--------TAPGVC 101
+Q QC G G C +C G C GVC
Sbjct: 9 KQQPQCGFGSAGLCC--RIC-----LKGPCRIDPFGEGPKYGVC 45
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 154
Score = 24.3 bits (52), Expect = 3.9
Identities = 7/54 (12%), Positives = 13/54 (24%)
Query: 19 FPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQMCQCP 72
Q + T + PG G H + + ++ P
Sbjct: 21 LTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAP 74
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 22.9 bits (49), Expect = 4.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 22 CLNNGTCTAPG-----VCSCPPGFQGLHCE 46
CL++G C C+C G+ G C+
Sbjct: 12 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 41
Score = 22.9 bits (49), Expect = 4.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 89 CLNNGTCTAPG-----VCSCPPGFQGLHCE 113
CL++G C C+C G+ G C+
Sbjct: 12 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 41
>d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 24.2 bits (52), Expect = 4.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 19 FPQCLNNGTCTAPGVCSCPPGFQ 41
+P+ + G+C + CS P G
Sbjct: 143 WPRYVKVGSCFSKRSCSVPEGMV 165
Score = 24.2 bits (52), Expect = 4.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 86 FPQCLNNGTCTAPGVCSCPPGFQ 108
+P+ + G+C + CS P G
Sbjct: 143 WPRYVKVGSCFSKRSCSVPEGMV 165
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 22.1 bits (47), Expect = 7.4
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 22 CLNNGTCTAPG-----VCSCPPGFQGLHCE 46
C N GTC VC CP GF G CE
Sbjct: 6 CFNGGTCQQALYFSDFVCQCPEGFAGKSCE 35
Score = 22.1 bits (47), Expect = 7.4
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 89 CLNNGTCTAPG-----VCSCPPGFQGLHCE 113
C N GTC VC CP GF G CE
Sbjct: 6 CFNGGTCQQALYFSDFVCQCPEGFAGKSCE 35
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 23.4 bits (49), Expect = 9.5
Identities = 10/88 (11%), Positives = 19/88 (21%)
Query: 8 YQGTYCGTAMCFPQCLNNGTCTAPGVCSCPPGFQGLHCEGGPGPGCDQKCSNGGWCDSQQ 67
+ T F + + + + C C GG Q + G DS++
Sbjct: 124 FSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEE 183
Query: 68 MCQCPKGYQGTYCGTAMCFPQCLNNGTC 95
+
Sbjct: 184 SYPYEATEESCKYNPKYSVANDAGFVDI 211
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.144 0.563
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,866
Number of extensions: 27836
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 272
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)