Query psy6689
Match_columns 89
No_of_seqs 110 out of 1031
Neff 8.0
Searched_HMMs 46136
Date Sat Aug 17 00:32:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01383 MYSc_type_VIII Myosin 100.0 2.2E-38 4.8E-43 240.6 7.3 88 2-89 367-454 (677)
2 cd01387 MYSc_type_XV Myosin mo 100.0 2.4E-38 5.2E-43 240.5 7.5 88 2-89 363-450 (677)
3 PTZ00014 myosin-A; Provisional 100.0 2.4E-38 5.1E-43 243.9 7.0 89 1-89 463-551 (821)
4 cd01381 MYSc_type_VII Myosin m 100.0 4E-38 8.6E-43 239.1 7.8 88 2-89 364-451 (671)
5 cd01384 MYSc_type_XI Myosin mo 100.0 5.3E-38 1.1E-42 238.5 7.3 88 2-89 369-456 (674)
6 cd01385 MYSc_type_IX Myosin mo 100.0 6E-38 1.3E-42 238.8 7.1 88 2-89 378-466 (692)
7 cd01382 MYSc_type_VI Myosin mo 100.0 5.9E-38 1.3E-42 239.5 7.0 88 2-89 399-486 (717)
8 cd01379 MYSc_type_III Myosin m 100.0 6.3E-38 1.4E-42 237.4 7.1 88 2-89 375-462 (653)
9 cd01378 MYSc_type_I Myosin mot 100.0 1.2E-37 2.6E-42 236.6 7.1 88 2-89 368-457 (674)
10 COG5022 Myosin heavy chain [Cy 100.0 1.1E-37 2.4E-42 245.3 5.9 88 2-89 430-518 (1463)
11 cd01377 MYSc_type_II Myosin mo 100.0 3.2E-37 7E-42 234.8 7.4 88 2-89 376-464 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 5.3E-37 1.2E-41 233.6 7.1 87 2-89 370-456 (691)
13 smart00242 MYSc Myosin. Large 100.0 1.6E-36 3.6E-41 230.6 7.2 88 2-89 371-458 (677)
14 cd00124 MYSc Myosin motor doma 100.0 7.5E-36 1.6E-40 227.1 6.7 88 2-89 364-451 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 8E-35 1.7E-39 223.4 6.8 88 2-89 375-483 (767)
16 PF00063 Myosin_head: Myosin h 100.0 7.6E-35 1.6E-39 221.5 5.9 88 2-89 366-454 (689)
17 KOG0161|consensus 100.0 8.9E-33 1.9E-37 223.6 4.8 87 2-89 450-537 (1930)
18 KOG0164|consensus 100.0 1.9E-32 4.2E-37 206.2 3.6 88 1-88 376-463 (1001)
19 KOG0163|consensus 100.0 4.8E-31 1E-35 199.8 5.9 88 2-89 453-540 (1259)
20 KOG0160|consensus 100.0 4.6E-29 1E-33 191.8 5.5 87 2-89 370-456 (862)
21 KOG0162|consensus 99.9 8.8E-29 1.9E-33 187.0 3.3 85 2-86 385-470 (1106)
22 KOG4229|consensus 99.9 3.9E-28 8.6E-33 189.9 3.5 88 2-89 429-516 (1062)
23 cd01850 CDC_Septin CDC/Septin. 42.6 38 0.00082 23.6 3.3 33 2-34 65-98 (276)
24 KOG2655|consensus 38.1 39 0.00085 25.0 2.9 34 2-35 81-115 (366)
25 COG2153 ElaA Predicted acyltra 35.2 20 0.00043 23.4 0.9 28 25-52 117-144 (155)
26 PF00735 Septin: Septin; Inte 25.7 1E+02 0.0022 21.7 3.2 34 2-35 65-99 (281)
27 KOG3043|consensus 25.6 29 0.00063 24.3 0.5 13 1-13 42-54 (242)
28 PF15216 TSLP: Thymic stromal 24.8 1.9E+02 0.004 18.2 3.9 55 28-82 9-69 (124)
29 COG5019 CDC3 Septin family pro 24.6 1.1E+02 0.0024 22.8 3.3 34 2-35 84-118 (373)
30 COG1162 Predicted GTPases [Gen 23.4 59 0.0013 23.5 1.7 13 4-16 220-232 (301)
31 PF00429 TLV_coat: ENV polypro 23.2 37 0.0008 26.5 0.7 27 59-85 459-485 (561)
32 PF04548 AIG1: AIG1 family; I 23.0 40 0.00086 22.3 0.8 12 2-13 51-62 (212)
33 PRK00085 recO DNA repair prote 20.3 47 0.001 22.3 0.7 42 45-87 3-44 (247)
No 1
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2.2e-38 Score=240.60 Aligned_cols=88 Identities=47% Similarity=0.852 Sum_probs=86.8
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||.++.|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||++||.|||++|||
T Consensus 367 IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLde 446 (677)
T cd01383 367 ISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDE 446 (677)
T ss_pred EEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 447 e~~~p~~t 454 (677)
T cd01383 447 ESTFPNAT 454 (677)
T ss_pred HHcCCCCC
Confidence 99999986
No 2
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=2.4e-38 Score=240.47 Aligned_cols=88 Identities=47% Similarity=0.789 Sum_probs=86.6
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+++.|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||++||.|||++|||
T Consensus 363 IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLde 442 (677)
T cd01387 363 IAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDD 442 (677)
T ss_pred EEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 443 e~~~p~~t 450 (677)
T cd01387 443 QCCFPQAT 450 (677)
T ss_pred HhcCCCCc
Confidence 99999985
No 3
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=2.4e-38 Score=243.85 Aligned_cols=89 Identities=30% Similarity=0.413 Sum_probs=87.1
Q ss_pred CceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccch
Q psy6689 1 MVENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 1 ~v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLD 80 (89)
.|+||||||||.|+.|||||||||||||+||++|++++|+.++++|.+|||.|..++|.||++|+|||++||.|||++||
T Consensus 463 ~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLD 542 (821)
T PTZ00014 463 FIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILE 542 (821)
T ss_pred eEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||++|+++
T Consensus 543 Eec~~p~~t 551 (821)
T PTZ00014 543 DQCLAPGGT 551 (821)
T ss_pred HHhCCCCCC
Confidence 999999986
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=4e-38 Score=239.11 Aligned_cols=88 Identities=43% Similarity=0.768 Sum_probs=86.7
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+++.|+|||||||||||+||++|++++|+.++++|.+|||.|..++|.||++|+|||++||.|||++|||
T Consensus 364 IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDe 443 (671)
T cd01381 364 IGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDE 443 (671)
T ss_pred EEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 444 e~~~p~~t 451 (671)
T cd01381 444 ESKFPKGT 451 (671)
T ss_pred hhcCCCCC
Confidence 99999986
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.3e-38 Score=238.48 Aligned_cols=88 Identities=45% Similarity=0.733 Sum_probs=86.7
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+|+.|+|||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|.|||++|||
T Consensus 369 IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLde 448 (674)
T cd01384 369 IGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDE 448 (674)
T ss_pred EEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 449 e~~~p~~t 456 (674)
T cd01384 449 ACMFPKST 456 (674)
T ss_pred HHcCCCCC
Confidence 99999986
No 6
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=6e-38 Score=238.75 Aligned_cols=88 Identities=52% Similarity=0.955 Sum_probs=86.6
Q ss_pred ceeeecCCCCCCCC-CchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccch
Q psy6689 2 VENMDMLHQSKNNW-RDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~-n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLD 80 (89)
|+||||||||+++. |+|||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||++||.|||++||
T Consensus 378 IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLd 457 (692)
T cd01385 378 IGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLD 457 (692)
T ss_pred EEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhH
Confidence 89999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||++|+++
T Consensus 458 ee~~~p~~t 466 (692)
T cd01385 458 EESNFPHAT 466 (692)
T ss_pred HHhcCCCCC
Confidence 999999986
No 7
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=5.9e-38 Score=239.47 Aligned_cols=88 Identities=35% Similarity=0.663 Sum_probs=86.7
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+++.|+|||||||||||+||++|++++|..++++|.+|||+|.++.|.||++|+|||++||.|||++|||
T Consensus 399 IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDe 478 (717)
T cd01382 399 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDE 478 (717)
T ss_pred EEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 479 e~~~p~~t 486 (717)
T cd01382 479 ENRLPQPS 486 (717)
T ss_pred HhcCCCCC
Confidence 99999985
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=6.3e-38 Score=237.44 Aligned_cols=88 Identities=44% Similarity=0.755 Sum_probs=86.6
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+|+.|+|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++||.|||++|||
T Consensus 375 IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLde 454 (653)
T cd01379 375 VGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDE 454 (653)
T ss_pred EEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 455 e~~~~~~t 462 (653)
T cd01379 455 ESRFPQAT 462 (653)
T ss_pred HhcCCCCC
Confidence 99999986
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.2e-37 Score=236.60 Aligned_cols=88 Identities=38% Similarity=0.660 Sum_probs=86.2
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhc-CCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~-~p~Gll~lLD 80 (89)
|+||||||||+|+.|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||++ +|.|||++||
T Consensus 368 IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLd 447 (674)
T cd01378 368 IGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILD 447 (674)
T ss_pred EEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred hhhccC-CCC
Q psy6689 81 DQANFS-YMR 89 (89)
Q Consensus 81 ee~~~p-~~~ 89 (89)
|||++| +++
T Consensus 448 ee~~~p~~~t 457 (674)
T cd01378 448 DVCATPHEGT 457 (674)
T ss_pred HHHcCCCCCC
Confidence 999999 775
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-37 Score=245.33 Aligned_cols=88 Identities=44% Similarity=0.810 Sum_probs=85.8
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhc-CCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~-~p~Gll~lLD 80 (89)
|+||||+|||.|+.|||||||||||||+||++|++|+|+.+|++|.+|||.|.+|+|.||++|+|||++ .|.|||++||
T Consensus 430 IGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLD 509 (1463)
T COG5022 430 IGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLD 509 (1463)
T ss_pred eeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhc
Confidence 899999999999999999999999999999999999999999999999999999999999999999997 4789999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||+.|.||
T Consensus 510 EE~~~p~at 518 (1463)
T COG5022 510 EECVMPHAT 518 (1463)
T ss_pred HHhcCCCCC
Confidence 999999986
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.2e-37 Score=234.81 Aligned_cols=88 Identities=42% Similarity=0.791 Sum_probs=86.1
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcCCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p~Gll~lLD 80 (89)
|+||||||||+|+.|+|||||||||||+||++|++++|+.++++|.+|||.|..++| .||++|+|||++||.|||++||
T Consensus 376 IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLd 455 (693)
T cd01377 376 IGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLD 455 (693)
T ss_pred EEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhh
Confidence 899999999999999999999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||++|+++
T Consensus 456 ee~~~~~~t 464 (693)
T cd01377 456 EECVFPKAT 464 (693)
T ss_pred HHhcCCCCC
Confidence 999999885
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=5.3e-37 Score=233.58 Aligned_cols=87 Identities=46% Similarity=0.787 Sum_probs=85.0
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+|+.|+|||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||++ |.|||++|||
T Consensus 370 IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLde 448 (691)
T cd01380 370 IGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDE 448 (691)
T ss_pred EEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999997 6999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 449 e~~~p~~t 456 (691)
T cd01380 449 ECRLPKGS 456 (691)
T ss_pred hhcCCCCC
Confidence 99999986
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.6e-36 Score=230.59 Aligned_cols=88 Identities=49% Similarity=0.882 Sum_probs=86.6
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+++.|+|||||||||||+||++|++++|..++++|.+|||.|..+.|.||++|+|||+++|.|||++|||
T Consensus 371 IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLde 450 (677)
T smart00242 371 IGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDE 450 (677)
T ss_pred EEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 451 e~~~~~~t 458 (677)
T smart00242 451 ECRFPKAT 458 (677)
T ss_pred HhcCCCCC
Confidence 99999875
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=7.5e-36 Score=227.05 Aligned_cols=88 Identities=49% Similarity=0.843 Sum_probs=86.5
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||.++.|+|||||||||||+||++|++++|+.++++|.+|||.|..+.|.||++|+|||+++|.||+++|||
T Consensus 364 IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLde 443 (679)
T cd00124 364 IGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDE 443 (679)
T ss_pred eeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 444 e~~~~~~~ 451 (679)
T cd00124 444 ECLFPKGT 451 (679)
T ss_pred HhCCCCCC
Confidence 99999875
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=8e-35 Score=223.38 Aligned_cols=88 Identities=28% Similarity=0.403 Sum_probs=82.4
Q ss_pred ceeeecCCCCCCCC------CchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcCC--
Q psy6689 2 VENMDMLHQSKNNW------RDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP-- 72 (89)
Q Consensus 2 v~ild~~gfe~~~~------n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p-- 72 (89)
|+||||||||.|++ |+|||||||||||+||++|++++|+.++++|.+|||+|+...+ .||++|+++|+++|
T Consensus 375 IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~ 454 (767)
T cd01386 375 IMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQ 454 (767)
T ss_pred EEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhccccc
Confidence 79999999999985 8999999999999999999999999999999999999986555 79999999999865
Q ss_pred ------------CcccccchhhhccCCCC
Q psy6689 73 ------------NGLLCVLDDQANFSYMR 89 (89)
Q Consensus 73 ------------~Gll~lLDee~~~p~~~ 89 (89)
.|||++|||||++|++|
T Consensus 455 ~~~~~~~~~~~~~GIl~lLDEec~~p~~t 483 (767)
T cd01386 455 VVVPAGLRAEDARGLLWLLDEEALVPGSS 483 (767)
T ss_pred ccccchhhccCCCchhhhhhHhhcCCCCc
Confidence 59999999999999986
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=7.6e-35 Score=221.51 Aligned_cols=88 Identities=48% Similarity=0.870 Sum_probs=79.8
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcCCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p~Gll~lLD 80 (89)
|+||||||||++..|+||||||||||||||++|++++|..++++|.+|||.|..++| .||++|+|||+++|.|||++||
T Consensus 366 IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLd 445 (689)
T PF00063_consen 366 IGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLD 445 (689)
T ss_dssp EEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHH
T ss_pred CcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhh
Confidence 899999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||++|+++
T Consensus 446 ee~~~~~~s 454 (689)
T PF00063_consen 446 EECLLPRGS 454 (689)
T ss_dssp HHCTSTTS-
T ss_pred hhhhcccch
Confidence 999999874
No 17
>KOG0161|consensus
Probab=99.97 E-value=8.9e-33 Score=223.60 Aligned_cols=87 Identities=41% Similarity=0.766 Sum_probs=85.2
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcCCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p~Gll~lLD 80 (89)
|+||||+|||.|+.||||||||||+||+||++|++++|..++++|.+|||.|.+++| .|-+||++||++ |+||+++||
T Consensus 450 IgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLd 528 (1930)
T KOG0161|consen 450 IGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLD 528 (1930)
T ss_pred ceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999 899999999996 889999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||++|+||
T Consensus 529 EEc~~PkAt 537 (1930)
T KOG0161|consen 529 EECVVPKAT 537 (1930)
T ss_pred HHHhcCCCc
Confidence 999999996
No 18
>KOG0164|consensus
Probab=99.97 E-value=1.9e-32 Score=206.16 Aligned_cols=88 Identities=38% Similarity=0.634 Sum_probs=85.7
Q ss_pred CceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccch
Q psy6689 1 MVENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 1 ~v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLD 80 (89)
+|++|||||||.++.|||||||||||||+||+.|++.+++.||+||.+|||+|.+++|.+|.-++||++.+..||++|||
T Consensus 376 Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailD 455 (1001)
T KOG0164|consen 376 VIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILD 455 (1001)
T ss_pred EEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCC
Q psy6689 81 DQANFSYM 88 (89)
Q Consensus 81 ee~~~p~~ 88 (89)
|||+.|+.
T Consensus 456 e~Cl~~G~ 463 (1001)
T KOG0164|consen 456 EACLRPGT 463 (1001)
T ss_pred HHhcCCCc
Confidence 99999873
No 19
>KOG0163|consensus
Probab=99.97 E-value=4.8e-31 Score=199.80 Aligned_cols=88 Identities=40% Similarity=0.696 Sum_probs=86.7
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|++||+.|||-|.+|||||+|||||||+||++|++++++.+|+.|.+||+.++.+.|.||++|++||+.|..|||.+|||
T Consensus 453 iGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDE 532 (1259)
T KOG0163|consen 453 IGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDE 532 (1259)
T ss_pred eEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
|.++|+++
T Consensus 533 EaklP~~s 540 (1259)
T KOG0163|consen 533 EAKLPKPS 540 (1259)
T ss_pred hccCCCcc
Confidence 99999985
No 20
>KOG0160|consensus
Probab=99.95 E-value=4.6e-29 Score=191.82 Aligned_cols=87 Identities=48% Similarity=0.798 Sum_probs=85.2
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|++||++|||.|+.|+||||||||+||+||+.|++|+|+.++++|..|+|+|..++|.||++|++++++ |.|++++|||
T Consensus 370 igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde 448 (862)
T KOG0160|consen 370 IGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDE 448 (862)
T ss_pred eeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccch
Confidence 789999999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
+|++|+++
T Consensus 449 ~c~lp~~t 456 (862)
T KOG0160|consen 449 ECMLPKGT 456 (862)
T ss_pred hccCCCCC
Confidence 99999875
No 21
>KOG0162|consensus
Probab=99.95 E-value=8.8e-29 Score=186.99 Aligned_cols=85 Identities=35% Similarity=0.651 Sum_probs=81.6
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhc-CCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~-~p~Gll~lLD 80 (89)
|+||||+|||.|+.|+|||+||||.||+||+.|++.+++.||++|.+|||.|.++.|.||.-++|||+. +|.||+++||
T Consensus 385 IGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ld 464 (1106)
T KOG0162|consen 385 IGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALD 464 (1106)
T ss_pred eeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999986 5889999999
Q ss_pred hhhccC
Q psy6689 81 DQANFS 86 (89)
Q Consensus 81 ee~~~p 86 (89)
|.|.-.
T Consensus 465 D~~At~ 470 (1106)
T KOG0162|consen 465 DVCATA 470 (1106)
T ss_pred HHHHHh
Confidence 998643
No 22
>KOG4229|consensus
Probab=99.94 E-value=3.9e-28 Score=189.93 Aligned_cols=88 Identities=48% Similarity=0.866 Sum_probs=86.5
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||++..|+|||+|+|+|||++|.+|.+++|..++++|..|+|.|..+.|.||..|+++|..||+||+.+|||
T Consensus 429 IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDe 508 (1062)
T KOG4229|consen 429 IGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDE 508 (1062)
T ss_pred eehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||.||+|+
T Consensus 509 es~fP~~t 516 (1062)
T KOG4229|consen 509 ESRFPKAT 516 (1062)
T ss_pred cCcCCchH
Confidence 99999985
No 23
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=42.61 E-value=38 Score=23.62 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=22.1
Q ss_pred ceeeecCCCCCCCCCch-hhhHhhhhhhhHHHHH
Q psy6689 2 VENMDMLHQSKNNWRDF-EQLCINYANEHLQYYF 34 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~-eql~iN~~nE~l~~~~ 34 (89)
+.|+|++||.....|+- -+-.++|..++...+.
T Consensus 65 l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l 98 (276)
T cd01850 65 LTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYL 98 (276)
T ss_pred EEEEecCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 46899999986654432 1455677777776655
No 24
>KOG2655|consensus
Probab=38.14 E-value=39 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=25.0
Q ss_pred ceeeecCCCCCCCCCchh-hhHhhhhhhhHHHHHH
Q psy6689 2 VENMDMLHQSKNNWRDFE-QLCINYANEHLQYYFN 35 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~e-ql~iN~~nE~l~~~~~ 35 (89)
++|+|++||-.+--|+.. +-.++|..++..+|+.
T Consensus 81 LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 81 LTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLD 115 (366)
T ss_pred eEEeccCCCcccccccccchhhhHHHHHHHHHHHh
Confidence 468999999876656543 5666888888887764
No 25
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=35.24 E-value=20 Score=23.38 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHhhhhhhHhhhhhcccc
Q psy6689 25 YANEHLQYYFNQHVFQYEQEEYNKEGIR 52 (89)
Q Consensus 25 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~ 52 (89)
-|.+.||.+|-++-|....++|.++||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 4788899999999999999999999995
No 26
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=25.67 E-value=1e+02 Score=21.67 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=21.3
Q ss_pred ceeeecCCCCCCCCCchh-hhHhhhhhhhHHHHHH
Q psy6689 2 VENMDMLHQSKNNWRDFE-QLCINYANEHLQYYFN 35 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~e-ql~iN~~nE~l~~~~~ 35 (89)
+.|+|++||-..-.|+.. +..++|..++...+..
T Consensus 65 LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~ 99 (281)
T PF00735_consen 65 LTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLE 99 (281)
T ss_dssp EEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 468999999764444322 4566787777776643
No 27
>KOG3043|consensus
Probab=25.65 E-value=29 Score=24.25 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=10.5
Q ss_pred CceeeecCCCCCC
Q psy6689 1 MVENMDMLHQSKN 13 (89)
Q Consensus 1 ~v~ild~~gfe~~ 13 (89)
+|.|.|+|||+-.
T Consensus 42 li~i~DvfG~~~~ 54 (242)
T KOG3043|consen 42 LIVIQDVFGFQFP 54 (242)
T ss_pred EEEEEeeeccccH
Confidence 4789999999843
No 28
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=24.82 E-value=1.9e+02 Score=18.18 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=33.9
Q ss_pred hhHHHHHHHhhhhhhHhhhhh-cccccccccc-CChHHHHHHHhc----CCCcccccchhh
Q psy6689 28 EHLQYYFNQHVFQYEQEEYNK-EGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDDQ 82 (89)
Q Consensus 28 E~l~~~~~~~~f~~~~~~y~~-Egi~~~~~~~-~dn~~~ldli~~----~p~Gll~lLDee 82 (89)
|+++.-|...+|..-.+.... -......+.+ .+.+.||..|+. +..|--|+.+|.
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~ 69 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKET 69 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHH
Confidence 567777777777654333332 2233444444 788899988876 446777776664
No 29
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=24.61 E-value=1.1e+02 Score=22.82 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=22.7
Q ss_pred ceeeecCCCCCCCCCchh-hhHhhhhhhhHHHHHH
Q psy6689 2 VENMDMLHQSKNNWRDFE-QLCINYANEHLQYYFN 35 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~e-ql~iN~~nE~l~~~~~ 35 (89)
+.++|++||=.+--|+.- +-.++|..++..+|+.
T Consensus 84 l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~ 118 (373)
T COG5019 84 LTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLD 118 (373)
T ss_pred EEEeccCCccccccccccHHHHHHHHHHHHHHHHH
Confidence 578999999876656432 4455677766666553
No 30
>COG1162 Predicted GTPases [General function prediction only]
Probab=23.42 E-value=59 Score=23.47 Aligned_cols=13 Identities=8% Similarity=-0.163 Sum_probs=11.1
Q ss_pred eeecCCCCCCCCC
Q psy6689 4 NMDMLHQSKNNWR 16 (89)
Q Consensus 4 ild~~gfe~~~~n 16 (89)
|+|++||..++..
T Consensus 220 iiDTPGf~~~~l~ 232 (301)
T COG1162 220 IIDTPGFRSLGLA 232 (301)
T ss_pred EEeCCCCCccCcc
Confidence 7899999998763
No 31
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=23.16 E-value=37 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=21.2
Q ss_pred CChHHHHHHHhcCCCcccccchhhhcc
Q psy6689 59 SDNTLCLQLVEGKPNGLLCVLDDQANF 85 (89)
Q Consensus 59 ~dn~~~ldli~~~p~Gll~lLDee~~~ 85 (89)
.-|...+|++..+..|+=..|.|||.|
T Consensus 459 ~qnr~~lD~l~a~~Gg~C~~l~~~CC~ 485 (561)
T PF00429_consen 459 LQNRRALDLLTAEQGGLCAALKEECCF 485 (561)
T ss_dssp HHHHHHHHHHTGGGTSHHHHHTS----
T ss_pred hcCchhhhhhhhhcCCchhhhCCceEE
Confidence 468999999999999999999999987
No 32
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=23.03 E-value=40 Score=22.32 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=7.4
Q ss_pred ceeeecCCCCCC
Q psy6689 2 VENMDMLHQSKN 13 (89)
Q Consensus 2 v~ild~~gfe~~ 13 (89)
|.|+|++||-..
T Consensus 51 v~VIDTPGl~d~ 62 (212)
T PF04548_consen 51 VTVIDTPGLFDS 62 (212)
T ss_dssp EEEEE--SSEET
T ss_pred EEEEeCCCCCCC
Confidence 679999998533
No 33
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=20.29 E-value=47 Score=22.33 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=33.0
Q ss_pred hhhhccccccccccCChHHHHHHHhcCCCcccccchhhhccCC
Q psy6689 45 EYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANFSY 87 (89)
Q Consensus 45 ~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDee~~~p~ 87 (89)
.++.+||-....+|.++.-++.+++. ..|+++.+-.-++.++
T Consensus 3 ~~~~~giVL~~~~~~E~d~iv~l~T~-~~G~i~~~a~g~rk~k 44 (247)
T PRK00085 3 LYRDEGIVLHTRPYGETSLIVTLFTR-EHGRVRAVAKGARRPK 44 (247)
T ss_pred cccccEEEEecCCCcccchhhhcccc-ccCcEEEEEecCCCCc
Confidence 35678888777888999999999995 5799988876665554
Done!