Query psy6689
Match_columns 89
No_of_seqs 110 out of 1031
Neff 8.0
Searched_HMMs 29240
Date Sat Aug 17 00:32:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 1.2E-39 4.1E-44 249.5 7.8 88 2-89 448-535 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 1.2E-39 4E-44 247.1 7.2 88 2-89 382-469 (697)
3 4anj_A Unconventional myosin-V 100.0 8.3E-39 2.8E-43 250.0 7.8 88 2-89 452-539 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 1E-38 3.6E-43 244.5 8.2 87 2-89 433-519 (795)
5 1w9i_A Myosin II heavy chain; 100.0 2E-38 6.7E-43 242.2 8.0 88 2-89 450-539 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 1.7E-38 5.9E-43 242.9 7.2 87 2-89 457-544 (783)
7 1kk8_A Myosin heavy chain, str 100.0 3.6E-38 1.2E-42 242.5 6.9 87 2-89 456-543 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 8.2E-38 2.8E-42 245.2 7.7 87 2-89 433-519 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.4E-37 4.7E-42 242.6 7.6 88 2-89 429-519 (995)
10 1g8x_A Myosin II heavy chain f 100.0 3E-37 1E-41 240.9 8.0 88 2-89 450-539 (1010)
11 1i84_S Smooth muscle myosin he 100.0 5.1E-37 1.8E-41 242.1 7.0 88 2-89 460-550 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 76.6 0.79 2.7E-05 23.9 0.7 27 59-85 24-50 (53)
13 1mof_A Moloney murine leukemia 72.9 1 3.5E-05 23.6 0.6 27 59-85 26-52 (55)
14 4g2k_A General control protein 39.7 12 0.00042 22.5 1.3 28 59-86 77-104 (125)
15 1dec_A Decorsin; blood coagula 31.0 12 0.00041 17.5 0.2 8 82-89 26-33 (39)
16 2xz3_A Maltose ABC transporter 25.4 15 0.00051 26.0 0.0 28 59-86 410-439 (463)
17 3t5d_A Septin-7; GTP-binding p 23.5 1.1E+02 0.0037 19.8 4.0 33 2-35 67-101 (274)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=1.2e-39 Score=249.47 Aligned_cols=88 Identities=34% Similarity=0.640 Sum_probs=86.8
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||.|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++|.||++|+|||++||.|||++|||
T Consensus 448 IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDE 527 (784)
T 2v26_A 448 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDE 527 (784)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHH
T ss_pred eeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 528 e~~~p~~t 535 (784)
T 2v26_A 528 ENRLPQPS 535 (784)
T ss_dssp HHHSSSCC
T ss_pred HhcCCCCC
Confidence 99999986
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-39 Score=247.13 Aligned_cols=88 Identities=36% Similarity=0.582 Sum_probs=86.7
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||.|+.|+|||||||||||+||++|++++|+.+|++|.+|||+|.+++|.||++|+|||++||.|||++|||
T Consensus 382 IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDE 461 (697)
T 1lkx_A 382 IGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDE 461 (697)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHH
T ss_pred EEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 462 ec~~p~~t 469 (697)
T 1lkx_A 462 ACLIAKST 469 (697)
T ss_dssp HHHSTTCC
T ss_pred hhCCCCCC
Confidence 99999986
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=8.3e-39 Score=249.98 Aligned_cols=88 Identities=34% Similarity=0.640 Sum_probs=86.9
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+|+.|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|.|||++|||
T Consensus 452 IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDE 531 (1052)
T 4anj_A 452 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDE 531 (1052)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHH
T ss_pred EEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 532 e~~~p~~t 539 (1052)
T 4anj_A 532 ENRLPQPS 539 (1052)
T ss_dssp HHHSSSCC
T ss_pred HhcCCCCc
Confidence 99999986
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1e-38 Score=244.49 Aligned_cols=87 Identities=45% Similarity=0.743 Sum_probs=85.4
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||.|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++|.||++|+|||++| .|||++|||
T Consensus 433 IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDE 511 (795)
T 1w7j_A 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDE 511 (795)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHH
T ss_pred EEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+++
T Consensus 512 ec~~p~~t 519 (795)
T 1w7j_A 512 ECKMPKGS 519 (795)
T ss_dssp HHTSTTCC
T ss_pred hccCCCCC
Confidence 99999986
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2e-38 Score=242.19 Aligned_cols=88 Identities=43% Similarity=0.804 Sum_probs=85.5
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcC-CCcccccc
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVL 79 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~-p~Gll~lL 79 (89)
|+||||||||.|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++| .||++|+|||+++ |.|||++|
T Consensus 450 IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslL 529 (770)
T 1w9i_A 450 IGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALL 529 (770)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHH
T ss_pred eeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhh
Confidence 899999999999999999999999999999999999999999999999999999999 5999999999984 99999999
Q ss_pred hhhhccCCCC
Q psy6689 80 DDQANFSYMR 89 (89)
Q Consensus 80 Dee~~~p~~~ 89 (89)
||||++|+++
T Consensus 530 DEec~~p~~t 539 (770)
T 1w9i_A 530 DEQSVFPNAT 539 (770)
T ss_dssp HHHHSSSSCC
T ss_pred hhhhCCCCCC
Confidence 9999999986
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.7e-38 Score=242.89 Aligned_cols=87 Identities=41% Similarity=0.835 Sum_probs=83.8
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcCCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p~Gll~lLD 80 (89)
|+||||||||+|+.|||||||||||||+||++|++++|+.+|++|.+|||+|..++| .||++|+|||++ |.|||++||
T Consensus 457 IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLD 535 (783)
T 4db1_A 457 IGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILE 535 (783)
T ss_dssp EEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHC
T ss_pred EEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhh
Confidence 899999999999999999999999999999999999999999999999999999999 699999999996 899999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||++|+++
T Consensus 536 Eec~~p~~t 544 (783)
T 4db1_A 536 EECMFPKAT 544 (783)
T ss_dssp C-TTCTTCC
T ss_pred HHhcCCCCC
Confidence 999999986
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=3.6e-38 Score=242.48 Aligned_cols=87 Identities=44% Similarity=0.862 Sum_probs=84.9
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcCCCcccccch
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLD 80 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~p~Gll~lLD 80 (89)
|+||||||||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|..++| .||++|+|||++ |.|||++||
T Consensus 456 IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLD 534 (837)
T 1kk8_A 456 IGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILE 534 (837)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHH
T ss_pred EEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999 599999999997 899999999
Q ss_pred hhhccCCCC
Q psy6689 81 DQANFSYMR 89 (89)
Q Consensus 81 ee~~~p~~~ 89 (89)
|||++|++|
T Consensus 535 Eec~~p~~t 543 (837)
T 1kk8_A 535 EECMFPKAD 543 (837)
T ss_dssp HHTTCTTCC
T ss_pred HHhcCCCCC
Confidence 999999986
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=8.2e-38 Score=245.22 Aligned_cols=87 Identities=45% Similarity=0.743 Sum_probs=85.3
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhccccccccccCChHHHHHHHhcCCCcccccchh
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 81 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~ldli~~~p~Gll~lLDe 81 (89)
|+||||||||+|+.|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||++| .|||++|||
T Consensus 433 IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLde 511 (1080)
T 2dfs_A 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDE 511 (1080)
T ss_dssp EEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHH
T ss_pred EEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
||++|+||
T Consensus 512 e~~~p~~t 519 (1080)
T 2dfs_A 512 ECKMPKGS 519 (1080)
T ss_dssp HTTSTTCC
T ss_pred cccCCCCC
Confidence 99999986
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.4e-37 Score=242.57 Aligned_cols=88 Identities=42% Similarity=0.761 Sum_probs=85.6
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhc--CCCccccc
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCV 78 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~--~p~Gll~l 78 (89)
|+||||||||.|+.|||||||||||||+||++|++++|+.++++|.+|||+|..++| .||++|+|||++ +|.|||++
T Consensus 429 IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~l 508 (995)
T 2ycu_A 429 LGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLAL 508 (995)
T ss_dssp EEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHH
T ss_pred EEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhh
Confidence 899999999999999999999999999999999999999999999999999999999 699999999998 48999999
Q ss_pred chhhhccCCCC
Q psy6689 79 LDDQANFSYMR 89 (89)
Q Consensus 79 LDee~~~p~~~ 89 (89)
|||||++|++|
T Consensus 509 Ldee~~~p~~t 519 (995)
T 2ycu_A 509 LDEECWFPKAT 519 (995)
T ss_dssp HHHSSSSTTCC
T ss_pred hHHHhcCCCCc
Confidence 99999999986
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=3e-37 Score=240.88 Aligned_cols=88 Identities=43% Similarity=0.787 Sum_probs=85.6
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhc-CCCcccccc
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVL 79 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~-~p~Gll~lL 79 (89)
|+||||||||.|+.|||||||||||||+||++|++++|+.++++|.+|||+|..++| .||++|+|||++ +|.|||++|
T Consensus 450 IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lL 529 (1010)
T 1g8x_A 450 IGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALL 529 (1010)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHH
T ss_pred eeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhh
Confidence 899999999999999999999999999999999999999999999999999999999 599999999998 499999999
Q ss_pred hhhhccCCCC
Q psy6689 80 DDQANFSYMR 89 (89)
Q Consensus 80 Dee~~~p~~~ 89 (89)
||||++|++|
T Consensus 530 dee~~~p~~t 539 (1010)
T 1g8x_A 530 DEQSVFPNAT 539 (1010)
T ss_dssp HHHTTSSSCC
T ss_pred hHHhCCCCCC
Confidence 9999999986
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=5.1e-37 Score=242.11 Aligned_cols=88 Identities=42% Similarity=0.757 Sum_probs=84.2
Q ss_pred ceeeecCCCCCCCCCchhhhHhhhhhhhHHHHHHHhhhhhhHhhhhhcccccccccc-CChHHHHHHHhcC--CCccccc
Q psy6689 2 VENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCV 78 (89)
Q Consensus 2 v~ild~~gfe~~~~n~~eql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~ldli~~~--p~Gll~l 78 (89)
|+||||||||.|+.|||||||||||||+||++|++++|+.++++|.+|||+|.+++| .||++|+|||+++ |+|||++
T Consensus 460 IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~l 539 (1184)
T 1i84_S 460 LGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLAL 539 (1184)
T ss_dssp EEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHH
T ss_pred EEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhh
Confidence 899999999999999999999999999999999999999999999999999999999 6999999999972 3499999
Q ss_pred chhhhccCCCC
Q psy6689 79 LDDQANFSYMR 89 (89)
Q Consensus 79 LDee~~~p~~~ 89 (89)
|||||++|++|
T Consensus 540 Ldee~~~p~~t 550 (1184)
T 1i84_S 540 LDEECWFPKAT 550 (1184)
T ss_dssp HHHTTSCTTCC
T ss_pred hhhhhCCCCCC
Confidence 99999999986
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=76.60 E-value=0.79 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.0
Q ss_pred CChHHHHHHHhcCCCcccccchhhhcc
Q psy6689 59 SDNTLCLQLVEGKPNGLLCVLDDQANF 85 (89)
Q Consensus 59 ~dn~~~ldli~~~p~Gll~lLDee~~~ 85 (89)
..|+-.+|++..+..|+=..|.|+|.|
T Consensus 24 lQNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 24 LQNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHhcCchhc
Confidence 358889999999899999999999986
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=72.86 E-value=1 Score=23.60 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=24.0
Q ss_pred CChHHHHHHHhcCCCcccccchhhhcc
Q psy6689 59 SDNTLCLQLVEGKPNGLLCVLDDQANF 85 (89)
Q Consensus 59 ~dn~~~ldli~~~p~Gll~lLDee~~~ 85 (89)
..|...+|++..+..|+=..|.|+|.|
T Consensus 26 lQNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 26 LQNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHHcCchhc
Confidence 358889999999899999999999987
No 14
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=39.74 E-value=12 Score=22.55 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=24.2
Q ss_pred CChHHHHHHHhcCCCcccccchhhhccC
Q psy6689 59 SDNTLCLQLVEGKPNGLLCVLDDQANFS 86 (89)
Q Consensus 59 ~dn~~~ldli~~~p~Gll~lLDee~~~p 86 (89)
.-|...+|++.....|+=..+.++|.|-
T Consensus 77 LQNRraLD~Lla~qGG~C~~l~e~CCfy 104 (125)
T 4g2k_A 77 LINRHAIDFLLTRWGGTCKVLGPDCSIG 104 (125)
T ss_dssp HHHHHHHHHHHGGGTCHHHHHCGGGGCC
T ss_pred HHHHHHHHHHHHHcCCcHHHhcccceee
Confidence 3578889999888899999999999884
No 15
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=30.98 E-value=12 Score=17.46 Aligned_cols=8 Identities=25% Similarity=0.222 Sum_probs=5.9
Q ss_pred hhccCCCC
Q psy6689 82 QANFSYMR 89 (89)
Q Consensus 82 e~~~p~~~ 89 (89)
+|+||+++
T Consensus 26 qcrfprgd 33 (39)
T 1dec_A 26 QCRFPRGD 33 (39)
T ss_dssp CEECCSSS
T ss_pred cccccCCC
Confidence 58888764
No 16
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=25.45 E-value=15 Score=25.97 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=23.5
Q ss_pred CChHHHHHHHhcCCC--cccccchhhhccC
Q psy6689 59 SDNTLCLQLVEGKPN--GLLCVLDDQANFS 86 (89)
Q Consensus 59 ~dn~~~ldli~~~p~--Gll~lLDee~~~p 86 (89)
.-|..-+|+|..+.. |+-..|.|||+|.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (463)
T 2xz3_A 410 AQNRRGLDWLYIRLGFQSLCPTINEPCCFL 439 (463)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHTCCCCCC
T ss_pred HhhcchhhHHHHHhCcCccchhhcCCceEE
Confidence 357788898888777 9999999999985
No 17
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=23.50 E-value=1.1e+02 Score=19.77 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=18.9
Q ss_pred ceeeecCCCCCCCCC--chhhhHhhhhhhhHHHHHH
Q psy6689 2 VENMDMLHQSKNNWR--DFEQLCINYANEHLQYYFN 35 (89)
Q Consensus 2 v~ild~~gfe~~~~n--~~eql~iN~~nE~l~~~~~ 35 (89)
+.|+|++||.....+ .+ +-.+.|..++...++.
T Consensus 67 l~liDTpG~~d~~~~~~~~-~~i~~~i~~~~~~~l~ 101 (274)
T 3t5d_A 67 LTIVDTPGFGDAVDNSNCW-QPVIDYIDSKFEDYLN 101 (274)
T ss_dssp EEEEECCCCSCCSCCTTTT-HHHHHHHHHHHHHHHH
T ss_pred EEEEECCCccccccchhhH-HHHHHHHHHHHHHHHH
Confidence 578999999654333 23 2334555555555443
Done!