RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6689
(89 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 126 bits (318), Expect = 9e-36
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 77
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 78 VLDDQANF 85
+LD++
Sbjct: 524 ILDEENRL 531
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 123 bits (312), Expect = 7e-35
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 77
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 78 VLDDQANF 85
+LD+
Sbjct: 458 LLDEACLI 465
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 120 bits (302), Expect = 2e-33
Identities = 37/68 (54%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 77
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 78 VLDDQANF 85
+LD++
Sbjct: 508 LLDEECKM 515
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 120 bits (302), Expect = 2e-33
Identities = 37/68 (54%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 77
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 78 VLDDQANF 85
+LD++
Sbjct: 508 LLDEECKM 515
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 114 bits (288), Expect = 1e-31
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 75
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 76 LCVLDDQANF 85
L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 114 bits (288), Expect = 1e-31
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 74
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 75 LLCVLDDQANF 85
LL +LD++ F
Sbjct: 505 LLALLDEECWF 515
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 113 bits (286), Expect = 2e-31
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 76
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 77 CVLDDQANF 85
+L+++ F
Sbjct: 532 SILEEECMF 540
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 113 bits (285), Expect = 3e-31
Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 76
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 77 CVLDDQANF 85
+L+++ F
Sbjct: 531 SILEEECMF 539
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 113 bits (285), Expect = 3e-31
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 75
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 76 LCVLDDQANF 85
L +LD+Q+ F
Sbjct: 526 LALLDEQSVF 535
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 109 bits (274), Expect = 7e-30
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PNG 74
FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P G
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 535
Query: 75 LLCVLDDQANF 85
+L +LD++ F
Sbjct: 536 VLALLDEECWF 546
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.068
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 17/82 (20%)
Query: 16 RDFEQLC--------INYAN--------EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 59
++ C +N N E LQ Q + + I+ R
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 60 DNTLCLQLVEGKPNGLLCVLDD 81
L + N LL VL +
Sbjct: 232 AELRRLLKSKPYENCLL-VLLN 252
Score = 28.3 bits (62), Expect = 0.32
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 22/80 (27%)
Query: 2 VENMDMLHQS---------KNNWRDFEQLCI-NYANEHLQYYFNQHVFQYEQEEYNKEGI 51
+EN LH+S + D + Y H+ + H+ E E
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPE------ 488
Query: 52 RWRHIEFSDNTLCLQLVEGK 71
R F L + +E K
Sbjct: 489 --RMTLFRMVFLDFRFLEQK 506
Score = 24.4 bits (52), Expect = 6.6
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 7 MLHQSKNNWRDFEQL-----------CINY--ANEHLQYYFNQHVFQYEQEEYNKE---- 49
+ W +++ + +N E+ + + VF +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---PPSAHIPTILL 392
Query: 50 GIRWRHIEFSD-----NTLCLQ-LVEGKPNGLLCVLDD 81
+ W + SD N L LVE +P +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 25.6 bits (56), Expect = 2.1
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 27 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 60
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 25.0 bits (54), Expect = 3.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 41 YEQEEYNKEGIRWRHIEFSDNT 62
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa,
MSGPP, unknown function; HET: MSE EPE; 2.30A
{Leishmania major}
Length = 167
Score = 24.6 bits (53), Expect = 5.5
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 41 YEQEEYNKEGIRWRHIEFSD 60
Y+ GI F D
Sbjct: 59 YDATLVKSRGIDVHSWPFDD 78
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4)
(RNAse HII), structur genomics, joint center for
structural genomics; 1.74A {Thermotoga maritima} SCOP:
c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Length = 250
Score = 24.1 bits (53), Expect = 7.1
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 15 WRDFEQLCINYANEHLQYYFNQH 37
+RD +L + + Q+ F++H
Sbjct: 152 FRD--RLMSEFHRMYPQFSFHKH 172
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 23.9 bits (52), Expect = 7.6
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 41 YEQEEYNKEGIRWRHIEFSDNT 62
+ G+ + D
Sbjct: 47 GPPHSDSCPGLTLHRLRIPDFC 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.438
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,366,399
Number of extensions: 65625
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 32
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)