RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6689
(89 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 69.7 bits (170), Expect = 3e-16
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 18 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 77
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449
Query: 78 VLDDQANF 85
+LD+
Sbjct: 450 LLDEACLI 457
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 66.3 bits (161), Expect = 4e-15
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 13 NNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 72
++ FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 421 FDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKP 480
Query: 73 NGLLCVLDDQ 82
G+ +L+++
Sbjct: 481 MGIFSILEEE 490
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 65.2 bits (158), Expect = 9e-15
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 5 MDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLC 64
+D+ FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C
Sbjct: 374 LDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPC 433
Query: 65 LQLVEGKPNGLLCVLDDQANF 85
+ L+E K G+L +LD++
Sbjct: 434 INLIEAK-MGVLDLLDEECKM 453
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 64.8 bits (157), Expect = 1e-14
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 5 MDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTL 63
+D+ FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D
Sbjct: 385 LDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQP 444
Query: 64 CLQLVEG--KPNGLLCVLDDQANF 85
C++L+E P G+L +LD++ F
Sbjct: 445 CIELIERPTNPPGVLALLDEECWF 468
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 64.7 bits (157), Expect = 2e-14
Identities = 34/73 (46%), Positives = 46/73 (63%)
Query: 13 NNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 72
++ FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 419 FDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKP 478
Query: 73 NGLLCVLDDQANF 85
G+L +L+++ F
Sbjct: 479 MGILSILEEECMF 491
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 61.2 bits (148), Expect = 3e-13
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 5 MDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTL 63
+D+ FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+
Sbjct: 406 LDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQA 465
Query: 64 CLQLVEG-KPNGLLCVLDDQANFSY 87
+ L++G +P G+L +LD+Q+ F
Sbjct: 466 TIDLIDGRQPPGILALLDEQSVFPN 490
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 25.8 bits (56), Expect = 0.68
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 1 MVENMDMLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIE 57
+ + H NW D E++ + L+ +H + N + R + +
Sbjct: 59 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 115
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 24.9 bits (54), Expect = 1.9
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 23 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 61
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 229
Score = 23.8 bits (50), Expect = 3.1
Identities = 7/55 (12%), Positives = 14/55 (25%)
Query: 7 MLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 61
LH + + + + H++Y + N W I
Sbjct: 26 FLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSP 80
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 23.5 bits (50), Expect = 5.0
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 7 MLHQSKNNWRDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 58
+ H +W E+ ++L+ H F + N R E
Sbjct: 76 IRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEI 127
>d1q2ha_ a.34.4.1 (A:) Adapter protein APS, dimerisation domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 22.1 bits (47), Expect = 8.3
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 16 RDFEQLCINYANEHLQY 32
DF + ++ Y
Sbjct: 16 VDFAHKFCRFLRDNPAY 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.438
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 349,659
Number of extensions: 14433
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 21
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)