BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy669
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 8 LDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI 66
LD E K Y LT A D PL ++ I+VQ++NDN P L+ Y+A + E
Sbjct: 63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG 122
Query: 67 LPIVQLAASDGDLDP----DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEH 122
+ + A+D D DP ++ Y I G P YF+I+ + +I T +DRE + E+
Sbjct: 123 TSVTNVTATDAD-DPVYGNSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKEEY 179
Query: 123 VLEVTVTDDGA-PAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
++ + D G LS TT + +++ DVNDN P+F Q+ YH ++PE
Sbjct: 180 LVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPE 226
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 59 IVENQSGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E SG PI+ + DLDP ++I Y +S + F I+ +G I ++LDRE
Sbjct: 9 VLEEFSGPEPIL-VGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAI-KRLDRE 66
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
+AE+ L D PL + II V+D+NDNAPEF YH +PE
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPE 117
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 8 LDVETKTHYWLTVFAQDHG--VVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSG 65
+D E K Y + + A+D G L T + + + +VNDN P +Y+ + E+
Sbjct: 171 MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVL 230
Query: 66 ILPIVQLAASDGDLDPDQRISYKISAGNPESYFNI----DIGSGLISTTGRKLDRENQAE 121
I ++ A+D D+ + + SY I G+ + F I G+I + LD E +
Sbjct: 231 GTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLR-KPLDFETKKS 289
Query: 122 HVLEV 126
+ L+V
Sbjct: 290 YTLKV 294
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
NI + LD E + Y L A D PL ++ ++VQ++NDN P L +Y+A +
Sbjct: 57 NIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANV 116
Query: 60 VENQSGILPIVQLAASDGDLDP----DQRISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
E + ++Q+ ASD D DP ++ Y I G P YF+++ +G+I T +D
Sbjct: 117 PERSNVGTSVIQVTASDAD-DPTYGNSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMD 173
Query: 116 RENQAEHVLEVTVTDDGA-PAPLSSTTRVIISVED 149
RE + E+ + + D G LS TT+V I++ D
Sbjct: 174 REAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 59 IVENQSGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E +G P++ + D+D D I Y +S + F ID SG I T + LDRE
Sbjct: 10 VIEEYTGPDPVL-VGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHAT-KTLDRE 67
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPLS 177
+A++ L D PL + I+ V+D+NDN PEF YH N+PE + +
Sbjct: 68 ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVI 127
Query: 178 QVS 180
QV+
Sbjct: 128 QVT 130
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGIL 67
LD E Y L+ A P+ ++ I V + NDN P V+ + E
Sbjct: 221 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 280
Query: 68 PIVQLAASDGDLDPDQR---ISYKISAGNPE----SYFNIDIGSGLISTTGRKLDRENQA 120
++ ++A+D D + D +SY I +PE + F I+ +G+IS G LDRE
Sbjct: 281 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFP 340
Query: 121 EHVLEVTVTD-DGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
E+ L V TD +G A LS + II + D NDNAP F+ Y +PE
Sbjct: 341 EYTLTVQATDLEG--AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 387
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 16/187 (8%)
Query: 6 TILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSG 65
T LD E Y LTV A D L IQ+ + NDN P+ Y A + EN+ G
Sbjct: 332 TGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG 391
Query: 66 ILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI----DIGSGLISTTGRKLDRENQ 119
+ +L+ +D D+ P + YKI N +FNI + G++ TT + LD E +
Sbjct: 392 -FEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGIL-TTAKGLDFELR 448
Query: 120 AEHVLEVTVTDD---GAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPL 176
++VL++TV + P P +ST V ++VEDVN+ AP F V++ E R E +
Sbjct: 449 KQYVLQITVENAEPFSVPLP-TSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKI 506
Query: 177 SQVSLIS 183
+SL++
Sbjct: 507 --ISLVA 511
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 2 IRTSTILDVETKTHYWL--TVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
+ T+ LD E + Y L TV + VPL T + P + V +
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDV 496
Query: 60 VENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQ 119
E+ S I+ L A D D Q++SY I +P + ++ +G+++ G LDRE++
Sbjct: 497 SEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGNG-NLDRESE 554
Query: 120 A----EHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAP 155
+ + + VTDDG + T +I+ V DVNDN P
Sbjct: 555 YVKNNTYTVIMLVTDDGVSVGTGTGT-LILHVLDVNDNGP 593
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGIL 67
LD E Y L+ A P+ ++ I V + NDN P V+ + E
Sbjct: 72 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 131
Query: 68 PIVQLAASDGDLDPDQR---ISYKISAGNPE----SYFNIDIGSGLISTTGRKLDRENQA 120
++ ++A+D D + D +SY I +PE + F I+ +G+IS G LDRE
Sbjct: 132 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFP 191
Query: 121 EHVLEVTVTD-DGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
E+ L V TD +G A LS + II + D NDNAP F+ Y +PE
Sbjct: 192 EYTLTVQATDLEG--AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 238
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 6 TILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSG 65
T LD E Y LTV A D L IQ+ + NDN P+ Y A + EN+ G
Sbjct: 183 TGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG 242
Query: 66 ILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI----DIGSGLISTTGRKLDRENQ 119
+ +L+ +D D+ P + YKI N +FNI + G++ TT + LD E +
Sbjct: 243 -FEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGIL-TTAKGLDFELR 299
Query: 120 AEHVLEVTVTDD---GAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPL 176
++VL++TV + P P S+ T ++VEDVN+ AP F V++ E R E +
Sbjct: 300 KQYVLQITVENAEPFSVPLPTSTATVT-VTVEDVNE-APFFVPAVSRVDVSEDLSRGEKI 357
Query: 177 SQVSLIS 183
+SL++
Sbjct: 358 --ISLVA 362
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 2 IRTSTILDVETKTHYWL--TVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
+ T+ LD E + Y L TV + VPL T + P + V +
Sbjct: 288 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDV 347
Query: 60 VENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQ 119
E+ S I+ L A D D Q++SY I +P + ++ +G+++ G LDRE++
Sbjct: 348 SEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGNG-NLDRESE 405
Query: 120 A----EHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAP 155
+ + + VTDDG + T +I+ V DVNDN P
Sbjct: 406 YVKNNTYTVIMLVTDDGVSVG-TGTGTLILHVLDVNDNGP 444
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 8/174 (4%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDPD---QRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE+ + L V D LS+T + +I+V+D+NDNAP F + Y +PE
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKDINDNAPVFNPSTYQGQVPE 232
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGIL 67
LD E+ Y L V A D L I V+++NDN P+ Y Q+ EN+
Sbjct: 179 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNAR 238
Query: 68 PIVQLAASDGDLD--PDQRISYKISAGNPESYFNI----DIGSGLISTTGRKLDRENQAE 121
I L +D D P + Y + +P+ F + G++ T + LD E + +
Sbjct: 239 -IATLKVTDDDAPNTPAWKAVYTV-VNDPDQQFVVVTDPTTNDGILK-TAKGLDFEAKQQ 295
Query: 122 HVLEVTV 128
++L V V
Sbjct: 296 YILHVRV 302
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 10/172 (5%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGIL 67
LD E + L A D + D+ I V ++NDN P L V+ + E
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 68 PIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSGLISTTGRKLDRENQA 120
++ + A D D DP+ + Y+I + P + F I+ +G I T LDRE
Sbjct: 126 YVMTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ 184
Query: 121 EHVLEVTVTD-DGAPA-PLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETR 170
++ L + TD +G P LS+T +I+V DVNDN PEF ++ +PE R
Sbjct: 185 QYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR 236
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 24/202 (11%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTD---VYIQVQNVNDNVPMTLDPVYYAQIVENQS 64
LD E Y L + A D P + ++ I V +VNDN P +Y ++ EN+
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV 237
Query: 65 GILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI----DIGSGLISTTGRKLDREN 118
++ + L +D D P +Y+IS G+P F I + GL+ T + +D E
Sbjct: 238 DVI-VANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLV-TVVKPIDFET 295
Query: 119 QAEHVLEVTVTD-----DGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRD 173
VL V + G P ST V ++V DVN+N P F N P+ ++
Sbjct: 296 NRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPN------PKIIRQE 348
Query: 174 EPLSQVSLIST-TGRKLDRENQ 194
E L ++++T T + DR Q
Sbjct: 349 EGLHAGTMLTTLTAQDPDRYMQ 370
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 2 IRTSTILDVET----KTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTL 51
I T +LD E+ Y T A D+G+ P+ + I + ++NDN P L
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVL 447
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
+I+ + LD E K Y L A + P+ ++ I++ ++NDN P+ VY A +
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATV 115
Query: 60 VENQSGILPIVQLAASDGDLDP----DQRISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
E +VQ+ A+D D DP ++ Y I G P YF+++ +G+I T +D
Sbjct: 116 PEMADVGTFVVQVTATDAD-DPTYGNSAKVVYSILQGQP--YFSVESETGIIKTALLNMD 172
Query: 116 RENQAEHVLEVTVTDDGAP-APLSSTTRVIISVED 149
REN+ ++ + + D G LS TT V I++ D
Sbjct: 173 RENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 82 DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTT 141
D + Y +S F I+ +G I T ++LDRE + ++L + P+ +
Sbjct: 32 DGSLKYILSGDGAGDLFIINENTGDIQAT-KRLDREEKPVYILRAQAVNRRTGRPVEPES 90
Query: 142 RVIISVEDVNDNAPEFEQNFYHVNIPE 168
II + D+NDN P F ++ Y +PE
Sbjct: 91 EFIIKIHDINDNEPIFTKDVYTATVPE 117
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 8/163 (4%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 62 NQSGILPIVQLAASDGDLDPD---QRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 122 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 181
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEF 157
DRE+ + L V D LS+T + +I+V+D+NDNAP F
Sbjct: 182 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKDINDNAPVF 223
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 13 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 68
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 69 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 8 LDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI 66
LD ETK+ + + DH GV+ V IQV +VNDN P + Y +I EN
Sbjct: 70 LDRETKSEFTVEFSVSDHQGVI----TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG 125
Query: 67 LPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEV 126
PI + A+D DL + Y P +F ID G++ T ++LD E + L V
Sbjct: 126 TPIFIVNATDPDLGAGGSVLYSFQP--PSPFFAIDSARGIV-TVIQELDYEVTQAYQLTV 182
Query: 127 TVTDDGAPAPLSSTTRVIISVEDVND 152
TD PLS+ + I + D+ D
Sbjct: 183 NATDQDKTRPLSTLANLAIIITDMQD 208
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 69 IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTV 128
+ QL A D D DP + + +S +F ++ +G++ + LDRE ++E +E +V
Sbjct: 29 VTQLLARDMDNDP---LVFGVSGEEASRFFAVEPDTGVVWLR-QPLDRETKSEFTVEFSV 84
Query: 129 TDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPL 176
+D T +V I V DVNDNAP F Y V IPE P+
Sbjct: 85 SDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI 128
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 8 LDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI 66
LD ETK+ + + DH GV+ V IQV +VNDN P + Y +I EN
Sbjct: 71 LDRETKSEFTVEFSVSDHQGVI----TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG 126
Query: 67 LPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEV 126
PI + A+D DL + Y P +F ID G++ T ++LD E + L V
Sbjct: 127 TPIFIVNATDPDLGAGGSVLYSFQP--PSPFFAIDSARGIV-TVIQELDYEVTQAYQLTV 183
Query: 127 TVTDDGAPAPLSSTTRVIISVEDV 150
TD PLS+ + I + D+
Sbjct: 184 NATDQDKTRPLSTLANLAIIITDL 207
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 69 IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTV 128
+ QL A D D DP + + +S +F ++ +G++ + LDRE ++E +E +V
Sbjct: 30 VTQLLARDMDNDP---LVFGVSGEEASRFFAVEPDTGVVWLR-QPLDRETKSEFTVEFSV 85
Query: 129 TDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPL 176
+D T +V I V DVNDNAP F Y V IPE P+
Sbjct: 86 SDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI 129
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 8 LDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI 66
LD ETK+ + + DH GV+ V IQV +VNDN P + Y +I EN
Sbjct: 71 LDRETKSEFTVEFSVSDHQGVI----TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG 126
Query: 67 LPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEV 126
PI + A+D DL + Y P +F ID G++ T ++LD E + L V
Sbjct: 127 TPIFIVNATDPDLGAGGSVLYSFQP--PSPFFAIDSARGIV-TVIQELDYEVTQAYQLTV 183
Query: 127 TVTDDGAPAPLSSTTRVIISVEDV 150
TD PLS+ + I + D+
Sbjct: 184 NATDQDKTRPLSTLANLAIIITDL 207
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 69 IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTV 128
+ QL A D D DP + + + +F ++ +G++ + LDRE ++E +E +V
Sbjct: 30 VTQLLARDMDNDP---LVFGVPGEEASRFFAVEPDTGVVWLR-QPLDRETKSEFTVEFSV 85
Query: 129 TDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPL 176
+D T +V I V DVNDNAP F Y V IPE P+
Sbjct: 86 SDHQG----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI 129
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 8 LDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI 66
LD ETK+ + + DH GV+ V IQV VNDN P + Y +I EN
Sbjct: 71 LDRETKSEFTVEFSVSDHQGVI----TRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVG 126
Query: 67 LPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEV 126
PI + A+D DL + Y P +F ID G++ T ++LD E + L V
Sbjct: 127 TPIFIVNATDPDLGAGGSVLYSFQP--PSPFFAIDSARGIV-TVIQELDYEVTQAYQLTV 183
Query: 127 TVTDDGAPAPLSSTTRVIISVEDV 150
TD PLS+ + I + D+
Sbjct: 184 NATDQDKTRPLSTLANLAIIITDL 207
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 69 IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTV 128
+ QL A D D DP + + +S +F ++ +G++ + LDRE ++E +E +V
Sbjct: 30 VTQLLARDMDNDP---LVFGVSGEEASRFFAVEPDTGVVWLR-QPLDRETKSEFTVEFSV 85
Query: 129 TDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPL 176
+D T +V I V VNDNAP F Y V IPE P+
Sbjct: 86 SDHQG----VITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPI 129
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 44 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAG--NPESYFNID 101
NDN P VY A + EN + PI+QL A+D D+ + +I Y A + +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 102 IGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAP 155
SG +S R +DRE + V D G P P + V+++++D NDN P
Sbjct: 68 ETSGWLSVLHR-IDREEVNQLRFTVMARDRGQP-PKTDKATVVLNIKDENDNVP 119
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVP 48
+D E TV A+D G P + V + +++ NDNVP
Sbjct: 79 IDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 61 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 120
Query: 62 NQSGILPIVQLAASDGDLDPD---QRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 121 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 180
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNA 154
DRE+ + L V D LS+T + +I+V+D+NDNA
Sbjct: 181 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKDINDNA 219
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 12 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 67
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 68 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 120
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 8 LDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI 66
LD E K Y LT D L + I+V ++NDN P+ + ++ + E
Sbjct: 61 LDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG 120
Query: 67 LPIVQLAASDGDLDP----DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEH 122
+ ++ A D D DP ++Y+I GN YF +D SG+I T LDRE+Q+ +
Sbjct: 121 TSVTKVTAEDAD-DPTVAGHATVTYQIIKGN--EYFTVD-DSGVIFTARADLDRESQSAY 176
Query: 123 VLEVTVTDDGAPAPLSSTTRVIISVED 149
+ V D SST VII + D
Sbjct: 177 EIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 113 KLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHR 172
+LDRE +AE+ L + D L ++ II V D+NDNAP F Q ++ ++PE
Sbjct: 60 RLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRL 119
Query: 173 DEPLSQVS 180
+++V+
Sbjct: 120 GTSVTKVT 127
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 48 PMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGSGL 106
P P Y A+I ENQ I+ + A D+ I Y + A G FNI SG+
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQGAGTFNIGPTSGI 273
Query: 107 ISTTGRKLDREN-QAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFE 158
+ ++LD E+ + HV + VT S++ + I V DVNDNAP+FE
Sbjct: 274 VKL-AKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFE 325
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 15/226 (6%)
Query: 8 LDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQNVNDNVPMTLD-PVYYAQIVE-NQS 64
L E +W+ + H + V I V++VND P ++ P+ +V+ N
Sbjct: 68 LGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAP 127
Query: 65 GILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVL 124
P+ L A D D D I Y I F +D SG++ T G L + + E+VL
Sbjct: 128 PNTPVFTLQARDPDTD--HNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDM-EYVL 184
Query: 125 EVTVTDDGAPAP---LSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPLSQVSL 181
V D ST +S+ AP+F Y IPE + +D + +
Sbjct: 185 YVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKA 243
Query: 182 ISTTGRKLDRENQAEHVLETGSGESEATLETGSGESEATLEVLFEN 227
S R++ +A+ G G + SG + E+ FE+
Sbjct: 244 KSFADREIRYTLKAQ-----GQGAGTFNIGPTSGIVKLAKELDFED 284
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 35 DVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI-LPIVQLAASDGDLDPDQRISYKISAGN 93
D+ I+V +VNDN P P Y A V+ + I+++ A D D + I Y +S
Sbjct: 309 DLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS--- 365
Query: 94 PESYFNIDIGSGLISTTGRKLDRE-NQAEHVLEVTVTDDGAPAPLS--STTRV 143
+ +F +D S I ++LD + N A + VT D G P P S +T RV
Sbjct: 366 -DDHFAVD--SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEP-PKSGVATVRV 414
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 59 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDR 116
I ENQ P + ++ S+G R+S K +P+ F I+ SG +S T R LDR
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT-RPLDR 67
Query: 117 ENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFY 162
E A + LEV VTD + R+ ISV D NDN P F++ Y
Sbjct: 68 EAIANYQLEVEVTDLSGKI-IDGPVRLDISVIDQNDNRPMFKEGPY 112
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L + D + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYIL-YSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEEGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEEGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 62 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 122 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 181
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 182 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 215
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 13 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 68
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 69 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 59 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 118
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 119 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 178
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 179 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 212
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 10 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 65
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 66 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 118
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
++ + LD E Y L A + ++ I V + NDN P V+ + E
Sbjct: 60 LKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Query: 62 NQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLISTTGRKL 114
+++++A+D D D + I+Y I + +PE + F ++ +G+IS L
Sbjct: 120 GAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE+ + L V D LS+T + +I+V+D
Sbjct: 180 DRESYPTYTLVVQAADLQGEG-LSTTAKAVITVKD 213
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 11 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A ++ ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGEA-VADPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 44 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAG---NPESYFNI 100
NDN P+ + I EN ++QL A+D D+ + I Y A + F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 101 DIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVN 151
+ +GLI T R LDRE A H + V + DG+ P +T V I+V DVN
Sbjct: 68 NNTTGLI-TVQRSLDREETAIHKVTV-LASDGSSTPARAT--VTINVTDVN 114
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 15/226 (6%)
Query: 8 LDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQNVNDNVPMTLD-PVYYAQIVE-NQS 64
L E +W+ + H + V I V++VND P ++ P+ +V+ N
Sbjct: 63 LGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAP 122
Query: 65 GILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVL 124
P+ L A D D D I Y I F +D SG++ T G L + + E+VL
Sbjct: 123 PNTPVFTLQARDPDTD--HNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDM-EYVL 179
Query: 125 EVTVTDDGAPAP---LSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPLSQVSL 181
V D ST +S+ AP+F Y IPE + +D + +
Sbjct: 180 YVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKA 238
Query: 182 ISTTGRKLDRENQAEHVLETGSGESEATLETGSGESEATLEVLFEN 227
S R++ +A+ G G + SG + E+ FE+
Sbjct: 239 KSFADREIRYTLKAQ-----GQGAGTFNIGPTSGIVKLAKELDFED 279
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 48 PMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGSGL 106
P P Y A+I ENQ I+ + A D+ I Y + A G FNI SG+
Sbjct: 212 PQFYMPSYEAEIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQGAGTFNIGPTSGI 268
Query: 107 ISTTGRKLDREN-QAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNA 154
+ ++LD E+ + HV + VT S++ + I V DVNDNA
Sbjct: 269 VKL-AKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNA 316
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGIL 67
LD E + L A D + D+ I V ++NDN P L V+ + E
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 68 PIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSGLISTTGRKLDRENQA 120
++ + A D D DP+ + Y+I + P + F I+ +G I T LDRE
Sbjct: 126 YVMTVTAIDAD-DPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ 184
Query: 121 EHVLEVTVTD-DGAPA-PLSSTTRVIISVED 149
++ L + TD +G P LS+T +I+V D
Sbjct: 185 QYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 61 ENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKLDR 116
EN G P +L D D + + Y ++ P F I+ SG +S T + LDR
Sbjct: 11 ENSRGPFP-QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT-KPLDR 68
Query: 117 ENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
E A L D + + ++I+V D+NDN PEF ++ ++PE
Sbjct: 69 ELIARFHLRAHAVDINGNQ-VENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 8 LDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGIL 67
LD E + L A D + D+ I V ++NDN P L V+ + E
Sbjct: 66 LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 68 PIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSGLISTTGRKLDRENQA 120
++ + A D D DP+ + Y+I + P + F I+ +G I T LDRE
Sbjct: 126 YVMTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQ 184
Query: 121 EHVLEVTVTD-DGAPA-PLSSTTRVIISVED 149
++ L + TD +G P LS+T +I+V D
Sbjct: 185 QYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 61 ENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKLDR 116
EN G P +L D D + + Y ++ P F I+ SG +S T + LDR
Sbjct: 11 ENSRGPFP-QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT-KPLDR 68
Query: 117 ENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
E A L D + + ++I+V D+NDN PEF ++ ++PE
Sbjct: 69 ELIARFHLRAHAVDINGNQ-VENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
>pdb|1ZXK|A Chain A, Crystal Structure Of Cadherin8 Ec1 Domain
pdb|1ZXK|B Chain B, Crystal Structure Of Cadherin8 Ec1 Domain
Length = 98
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 59 IVENQSGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E SG PI+ + DLDP ++I Y +S + F I+ +G I ++LDRE
Sbjct: 9 VLEEFSGPEPIL-VGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAI-KRLDRE 66
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
+AE+ L D PL + II V+D
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ + + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 13 ENEKGEFPKNLVQIKS---NRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 68
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L A + ++I+V D NDN PEF Q + ++ E
Sbjct: 69 DREAIAKYILYSHAVSSNGEA-VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 121
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 35 DVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILP---IVQLAASDGDLDP---DQRISYK 88
++ I V + NDN P V+ ++E G LP ++++ A+D D D + I+Y
Sbjct: 93 EILITVTDQNDNKPEFTQEVFKGSVME---GALPGTSVMEVTATDADDDVNTYNAAIAYT 149
Query: 89 ISAGNPE----SYFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTD 130
I + +PE + F I+ +G+IS LDRE+ + L V D
Sbjct: 150 ILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 61 ENQSGILP--IVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P +VQ+ ++ D + ++ Y I+ P F I+ +G + T L
Sbjct: 11 ENEKGPFPKNLVQIKSNK---DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVT-EPL 66
Query: 115 DRENQAEHVL---EVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A + L V+ + P+ ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DRERIATYTLFSHAVSSNGNAVEDPM----EILITVTDQNDNKPEFTQEVFKGSVME 119
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 59 IVENQSGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E +G P++ + D+D D I Y +S + F ID SG I T + LDRE
Sbjct: 10 VIEEYTGPDPVL-VGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHAT-KTLDRE 67
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
+A++ L D PL + I+ V+D
Sbjct: 68 ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQD 99
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 59 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDR 116
I ENQ P + ++ S+G R+S K +P+ F I+ SG +S T R LDR
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT-RPLDR 67
Query: 117 ENQAEHVLEVTVTD 130
E A + LEV VTD
Sbjct: 68 EAIANYELEVEVTD 81
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 69 IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTV 128
+ QL A D D DP + + +S +F ++ +G++ + LDRE ++E +E +V
Sbjct: 30 VTQLLARDMDNDP---LVFGVSGEEASRFFAVEPDTGVVWLR-QPLDRETKSEFTVEFSV 85
Query: 129 TD 130
+D
Sbjct: 86 SD 87
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 59 IVENQSGILPIVQLAASDGDLD-PDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E +G P+ + D+D D I Y +S F ID +G I ++LDRE
Sbjct: 10 VLEEYTGTDPLY-VGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAI-QRLDRE 67
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
++++ L D P+ + II ++D
Sbjct: 68 ERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 106 LISTTGRKLDRE---NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFY 162
+++TGR LDR+ N V++V + + R++ V D NDN+P F+ Y
Sbjct: 75 FLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIV--VRDRNDNSPTFKHESY 132
Query: 163 HVNIPE 168
+ + E
Sbjct: 133 YATVNE 138
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 94 PESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDN 153
P F I+ SG +S T + LDRE A L D + + ++I+V D+NDN
Sbjct: 49 PTGIFIINPISGQLSVT-KPLDRELIARFHLRAHAVDINGNQ-VENPIDIVINVIDMNDN 106
Query: 154 APEF 157
PEF
Sbjct: 107 RPEF 110
>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
Length = 281
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 173 DEPLSQVSLISTTGR-----KLDRENQAEHVLETGSGESEATLE------TGSGESEATL 221
D+ V+L+ TGR K+D +++A LE+ E+E TL T +G S L
Sbjct: 57 DDLAETVALVEKTGRRCISAKVDVKDRA--ALESFVAEAEDTLGGIDIAITNAGISTIAL 114
Query: 222 EVLFENSTWENFHETNITGDF 242
E++ W+ TN+TG F
Sbjct: 115 LPEVESAQWDEVIGTNLTGTF 135
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 101 DIGSGLISTTGRKLDRENQAEHVLE--VTVTDDGAPAPLSSTTRV 143
D+G G ++T G ++ + + + + V TD APAPLSS +R
Sbjct: 37 DLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRA 81
>pdb|2WZS|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
Length = 738
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 15 HYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
HY +VF G++ L ++++ + + VP D YY Q++
Sbjct: 519 HYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPPIFDDSYYGQVI 564
>pdb|2WVZ|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW1|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
Length = 744
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 15 HYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
HY +VF G++ L ++++ + + VP D YY Q++
Sbjct: 519 HYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPPIFDDSYYGQVI 564
>pdb|4HS7|A Chain A, 2.6 Angstrom Structure Of The Extracellular Solute-Binding
Protein From Staphylococcus Aureus In Complex With Peg.
pdb|4HS7|B Chain B, 2.6 Angstrom Structure Of The Extracellular Solute-Binding
Protein From Staphylococcus Aureus In Complex With Peg.
pdb|4HW8|A Chain A, 2.25 Angstrom Structure Of The Extracellular
Solute-Binding Protein From Staphylococcus Aureus In
Complex With Maltose.
pdb|4HW8|B Chain B, 2.25 Angstrom Structure Of The Extracellular
Solute-Binding Protein From Staphylococcus Aureus In
Complex With Maltose
Length = 420
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 145 ISVEDVNDNAPEFEQNFYHV----NIPETRHRDEPLSQVSLISTTGR 187
+ V+ N N FE+ H NIPE R EP+ S+ + G+
Sbjct: 344 VDVKSSNPNLKVFEKQARHAEPMPNIPEMRQVWEPMGNASIFISNGK 390
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
++ + LD ET Y L V D L + + V + NDN P+ + Y ++
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVM 118
Query: 61 ENQSGILPIVQLAASDGDLDP---DQRISYKISAGNPE----SYFNIDIGSGLIST--TG 111
E ++++ A D D DP + + Y I P+ + F ID G I T +
Sbjct: 119 EGSPTGTTVMRMTAFDAD-DPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSP 177
Query: 112 RKLDRE 117
LDRE
Sbjct: 178 ALLDRE 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,538,273
Number of Sequences: 62578
Number of extensions: 312366
Number of successful extensions: 715
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 101
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)