RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy669
(248 letters)
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 154 bits (391), Expect = 5e-47
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
NI + LD E + Y L A D PL ++ ++VQ++NDN P L +Y+A +
Sbjct: 57 NIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANV 116
Query: 60 VENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
E + ++Q+ ASD D DP ++ Y I G P YF+++ +G+I T +D
Sbjct: 117 PERSNVGTSVIQVTASDAD-DPTYGNSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMD 173
Query: 116 RENQAEHVLEVTVTD-DGAPAPLSSTTRVIISVEDVNDNAPE 156
RE + E+ + + D G LS TT+V I++ D + +
Sbjct: 174 REAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
Score = 122 bits (308), Expect = 1e-34
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 36/176 (20%)
Query: 59 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E +G P +V SD D D I Y +S + F ID SG I T + LDRE
Sbjct: 10 VIEEYTGPDPVLVGRLHSDID-SGDGNIKYILSGEGAGTIFVIDDKSGNIHAT-KTLDRE 67
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPLS 177
+A++ L D PL + I+ V+D+NDN PEF YH N+PE + +
Sbjct: 68 ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVI 127
Query: 178 QVS---------------------------------LISTTGRKLDRENQAEHVLE 200
QV+ +I T +DRE + E+ +
Sbjct: 128 QVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVV 183
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 148 bits (375), Expect = 2e-43
Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 9/186 (4%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
+I LD E K Y LT A D PL ++ I+VQ++NDN P L+ Y+A +
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATV 115
Query: 60 VENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
E + + A+D D DP ++ Y I G P YF+I+ + +I T +D
Sbjct: 116 PEMSILGTSVTNVTATDAD-DPVYGNSAKLVYSILEGQP--YFSIEPETAIIKTALPNMD 172
Query: 116 RENQAEHVLEVTVTDDGAPAP-LSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDE 174
RE + E+++ + D G + LS TT + +++ DVNDN P+F Q+ YH ++PE
Sbjct: 173 REAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGT 232
Query: 175 PLSQVS 180
+ +V
Sbjct: 233 AIGRVK 238
Score = 110 bits (278), Expect = 4e-29
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 37/182 (20%)
Query: 53 PVY-YAQIVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTT 110
V+ ++E SG P +V +D D ++I Y +S + F I+ +G I
Sbjct: 2 WVWNQMFVLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITGDIHAI 60
Query: 111 GRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE-- 168
R LDRE +AE+ L D PL + II V+D+NDNAPEF YH +PE
Sbjct: 61 KR-LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMS 119
Query: 169 ----------TRHRDEPL---------------------SQVSLISTTGRKLDRENQAEH 197
D+P+ + ++I T +DRE + E+
Sbjct: 120 ILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEY 179
Query: 198 VL 199
++
Sbjct: 180 LV 181
Score = 110 bits (277), Expect = 6e-29
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 1 NIRT-STILDVETKTHYWLTVFAQDHGVV--PLHARTDVYIQVQNVNDNVPMTLDPVYYA 57
I+T +D E K Y + + A+D G L T + + + +VNDN P +Y+
Sbjct: 163 IIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHF 222
Query: 58 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIG----SGLISTTGRK 113
+ E+ I ++ A+D D+ + + SY I G+ + F I G+I +
Sbjct: 223 SVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLR-KP 281
Query: 114 LDRENQAEHVLEVTVTDDGAPA------PLSSTTRVIISVE 148
LD E + + L+V + P T V I VE
Sbjct: 282 LDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE 322
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 148 bits (376), Expect = 7e-42
Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
+ + LD E Y L+ A P+ ++ I V + NDN P V+ +
Sbjct: 65 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 124
Query: 61 ENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPES----YFNIDIGSGLISTTGR 112
E ++ ++A+D D D +SY I +PE F I+ +G+IS G
Sbjct: 125 EGVQPGTQVMAVSATDED-DNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 183
Query: 113 KLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHR 172
LDRE E+ L V TD LS + II + D NDNAP F+ Y +PE
Sbjct: 184 GLDREKFPEYTLTVQATDLEGA-GLSVEGKAIIQITDANDNAPIFDPKTYTALVPE---- 238
Query: 173 DEPLSQVSLISTT 185
+E +V +S T
Sbjct: 239 NEIGFEVQRLSVT 251
Score = 125 bits (315), Expect = 3e-33
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 2 IRTSTILDVETKTHYWLTVFAQD---HGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQ 58
+ T+ LD E + Y L + ++ V + V + V++VN+ P + V
Sbjct: 288 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 346
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDREN 118
+ E+ S I+ L A D D Q++SY I +P + ++ +G+++ LDRE+
Sbjct: 347 VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIG-NDPARWLTVNKDNGIVTGN-GNLDRES 404
Query: 119 QAEHV----LEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
+ + + VTDDG + T +I+ V DVNDN P + +
Sbjct: 405 EYVKNNTYTVIMLVTDDGVS-VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN 457
Score = 105 bits (265), Expect = 2e-26
Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 48/191 (25%)
Query: 53 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLIS 108
P E +VQ+ + D ++ Y I+ P+ F I+ +G +
Sbjct: 11 PPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWML 67
Query: 109 TTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
T R LDRE ++VL + P+ + I+V D NDN P+F Q+ + ++ E
Sbjct: 68 VT-RPLDREEYDKYVLSSHAVSENGS-PVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE 125
Query: 169 -----TR-------HRDEP------------LSQVS---------------LISTTGRKL 189
T+ D+ L Q +IS G L
Sbjct: 126 GVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGL 185
Query: 190 DRENQAEHVLE 200
DRE E+ L
Sbjct: 186 DREKFPEYTLT 196
Score = 104 bits (261), Expect = 9e-26
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 14/163 (8%)
Query: 1 NIRTSTILDVETKT----HYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYY 56
+ + LD E++ Y + + D GV + + V +VNDN P P +
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP-VPSPRVF 451
Query: 57 AQIVENQSGILPIVQLAASDGDLDPD-QRISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
+N L SD D+ P+ +S G+ ++ G
Sbjct: 452 TMCDQNPEP----QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLL-SPTQ 506
Query: 116 RENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFE 158
+ + ++ + V ++D P + +V A + +
Sbjct: 507 QLKKGDYSIYVLLSDAQNN-PQLTVVNA--TVCSCEGKAIKCQ 546
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 150 bits (381), Expect = 8e-42
Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
+ + LD E Y L+ A P+ ++ I V + NDN P V+ +
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 273
Query: 61 ENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPES----YFNIDIGSGLISTTGR 112
E ++ ++A+D D D +SY I +PE F I+ +G+IS G
Sbjct: 274 EGVQPGTQVMAVSATDED-DNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 332
Query: 113 KLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHR 172
LDRE E+ L V TD LS + II + D NDNAP F+ Y +PE
Sbjct: 333 GLDREKFPEYTLTVQATDLEGA-GLSVEGKAIIQITDANDNAPIFDPKTYTALVPE---- 387
Query: 173 DEPLSQVSLISTT 185
+E +V +S T
Sbjct: 388 NEIGFEVQRLSVT 400
Score = 129 bits (325), Expect = 3e-34
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Query: 2 IRT-STILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
I T LD E Y LTV A D L IQ+ + NDN P+ Y A +
Sbjct: 327 ISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVP 386
Query: 61 ENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI----DIGSGLISTTGRKL 114
EN+ G + +L+ +D D+ P + YKI N +FNI + G+++T + L
Sbjct: 387 ENEIGF-EVQRLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNITTDPESNQGILTTA-KGL 443
Query: 115 DRENQAEHVLEVTVTD--DGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
D E + ++VL++TV + + +ST V ++VEDVN+ P F V++ E
Sbjct: 444 DFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSE 498
Score = 128 bits (322), Expect = 7e-34
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 2 IRTSTILDVETKTHYWLTVFAQD---HGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQ 58
+ T+ LD E + Y L + ++ V + V + V++VN+ P + V
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 495
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDREN 118
+ E+ S I+ L A D D Q++SY I +P + ++ +G+++ LDRE+
Sbjct: 496 VSEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDNGIVTGN-GNLDRES 553
Query: 119 QAEHV----LEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
+ + + VTDDG + T +I+ V DVNDN P + +
Sbjct: 554 EYVKNNTYTVIMLVTDDGVS-VGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN 606
Score = 114 bits (286), Expect = 4e-29
Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 12/171 (7%)
Query: 7 ILDVETKTHYWLTVFAQDHGVV--PLHARTDVYIQVQNVNDNVPMTLDPVYY---AQIVE 61
K + V ++ H + + + + ++ E
Sbjct: 107 WDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSE 166
Query: 62 NQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKLDRE 117
N+ G P +L + D ++ Y I+ P+ F I+ +G + T R LDRE
Sbjct: 167 NERGPFP-KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVT-RPLDRE 224
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
++VL + P+ + I+V D NDN P+F Q+ + ++ E
Sbjct: 225 EYDKYVLSSHAVSENGS-PVEEPMEITINVIDQNDNRPKFTQDVFRGSVRE 274
Score = 101 bits (253), Expect = 1e-24
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 14/173 (8%)
Query: 2 IRTSTILDVETKT----HYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYA 57
+ + LD E++ Y + + D GV + + V +VNDN P P +
Sbjct: 543 VTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP-VPSPRVFT 601
Query: 58 QIVENQSGILPIVQLAASDGDLDP-DQRISYKISAGNPESYFNIDIGSGLISTTGRKLDR 116
+N L SD D+ P +S G+ ++ G +
Sbjct: 602 MCDQNPEP----QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLL-SPTQQ 656
Query: 117 ENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPET 169
+ ++ + V ++D P + +V A + ++
Sbjct: 657 LKKGDYSIYVLLSDAQNN-PQLTVVNA--TVCSCEGKAIKCQEKLVGGFDLPI 706
Score = 68.4 bits (167), Expect = 2e-13
Identities = 28/226 (12%), Positives = 54/226 (23%), Gaps = 51/226 (22%)
Query: 22 AQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGI-LPIVQLAASDGDLD 80
A L V +V+ P Y + + + ++ S D
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFS--DCT 66
Query: 81 PDQRISYKISA--------GNPESYFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDG 132
+ Y + G ++ + T R + + V
Sbjct: 67 TRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHR 126
Query: 133 APAPLSSTTRVIISVEDVNDNAPEFEQ-------NFYHVNIPETRHRDEPLSQV------ 179
+ S + + V + ++ V+ E + L Q+
Sbjct: 127 SGEEAHSRS-SKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDR 185
Query: 180 ---------------------SLISTTG-----RKLDRENQAEHVL 199
+ TG R LDRE ++VL
Sbjct: 186 FNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVL 231
Score = 39.1 bits (91), Expect = 0.001
Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 10/146 (6%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
+ K Y + V D P T V V + + + +
Sbjct: 648 SMLLSPTQQLKKGDYSIYVLLSDAQNNPQ--LTVVNATVCSCEGKAIKCQEKLVGGFDLP 705
Query: 62 NQSGILPIVQLAASDGDLDPDQRISYKIS--------AGNPESYFNIDIGSGLISTTGRK 113
IL V L K+ ++ F G
Sbjct: 706 IILVILGSVLALLILFLLLLLFLKRKKVVKEPLLLPEDDTRDNIFYYGEEGGGEEDQDYD 765
Query: 114 LDRENQAEHVLEVTVTDDGAPAPLSS 139
L + ++ + +D P + +
Sbjct: 766 LSQLHRGLDSRPDIMRNDVVPTLMPA 791
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 145 bits (368), Expect = 1e-40
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
++ + LD E Y L A + ++ I V + NDN P V+ +
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 61 ENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSGLISTTGRK 113
E +++++A+D D D + I+Y I + +PE F ++ +G+IS
Sbjct: 119 EGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG 178
Query: 114 LDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRD 173
LDRE+ + L V D LS+T + +I+V+D+NDNAP F + Y +PE +
Sbjct: 179 LDRESYPTYTLVVQAADLQGE-GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPE----N 233
Query: 174 EPLSQVSLISTT 185
E ++++ + T
Sbjct: 234 EVNARIATLKVT 245
Score = 125 bits (317), Expect = 2e-33
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVV---PLHARTDVYIQVQNVNDNVPMTLDPVYYAQ 58
++T+ LD E K Y L V ++ + + V + V +VN+ P+ + +
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVE 340
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE- 117
+ E+ I A + D DQ+I+Y+I + ++ I+ +G I T ++DRE
Sbjct: 341 VPEDFGVGQEITSYTAREPDTFMDQKITYRI-WRDTANWLEINPETGAIFTR-AEMDRED 398
Query: 118 ----NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
+ +V + TDDG+P + T +++ + DVNDNAP E
Sbjct: 399 AEHVKNSTYVALIIATDDGSP-IATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRN 452
Score = 108 bits (273), Expect = 2e-27
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 16/171 (9%)
Query: 2 IRTSTILDVETKTH-----YWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYY 56
I T +D E H Y + A D G + + + +VNDN P+
Sbjct: 388 IFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ 447
Query: 57 AQIVENQSGILPIVQLAASDGDLDP-DQRISYKISAGNPES-YFNIDIGSGLISTTGRKL 114
Q + D DL P + +++ G + + + +
Sbjct: 448 FCQRNPQP-----HIITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLIL-QPR 501
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVN 165
E+ + + + D+ T + + V D + +H +
Sbjct: 502 KDLEIGEYKIHLKLADNQNK---DQVTTLDVHVCDCEGTVNNCMKAHHHHH 549
Score = 108 bits (272), Expect = 3e-27
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
EN+ G P L + D + ++ Y I+ P F I+ +G + T + L
Sbjct: 9 CPENEKGEFP-KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT-QPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
DRE A+++L + ++I+V D NDN PEF Q + ++ E
Sbjct: 67 DREAIAKYILYSHAVSSNGE-AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE 119
Score = 39.2 bits (92), Expect = 9e-04
Identities = 4/58 (6%), Positives = 13/58 (22%), Gaps = 2/58 (3%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQ 58
Y + + D+ + + V + V + ++
Sbjct: 494 ESLILQPRKDLEIGEYKIHLKLADNQNKDQVTT--LDVHVCDCEGTVNNCMKAHHHHH 549
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 144 bits (364), Expect = 5e-40
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
+ + LD E + L A D + D+ I V ++NDN P L V+ +
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 61 ENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSGLISTTGRK 113
E ++ + A D D DP+ + Y+I + P + F I+ +G I T
Sbjct: 119 EGSKPGTYVMTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 114 LDRENQAEHVLEVTVTDDGAPAP--LSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRH 171
LDRE ++ L + TD LS+T +I+V DVNDN PEF ++ +PE
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPE--- 234
Query: 172 RDEPLSQVSLISTT 185
+ V+ ++ T
Sbjct: 235 -NRVDVIVANLTVT 247
Score = 129 bits (327), Expect = 8e-35
Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 18/182 (9%)
Query: 2 IRT-STILDVETKTHYWLTVFAQDHGVVP---LHARTDVYIQVQNVNDNVPMTLDPVYYA 57
I T + LD E Y L + A D P L I V +VNDN P +Y
Sbjct: 171 IITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG 230
Query: 58 QIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNPESYFNI----DIGSGLISTTG 111
++ EN+ + + L +D D P +Y+IS G+P F I + GL++
Sbjct: 231 EVPENRVDV-IVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVV- 288
Query: 112 RKLDRENQAEHVLEVTVTDDGAPA-----PLSSTTRVIISVEDVNDNAPEFEQNFYHVNI 166
+ +D E VL V + A P ST V ++V DVN+N P F N +
Sbjct: 289 KPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQ 347
Query: 167 PE 168
E
Sbjct: 348 EE 349
Score = 124 bits (314), Expect = 4e-33
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 2 IRTSTILDVETKT----HYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYA 57
I T +LD E+ Y T A D+G+ P+ + I + ++NDN P + P A
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP-QVLP-QEA 451
Query: 58 QIVENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPESYFNIDIGSGLISTTGRKL 114
+ E + + A D D+DP+ +S + + I+ +G + K+
Sbjct: 452 ETCETPE--PNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKI 509
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHV 164
+ + + +TD G P P S+ + + + V + N + + +H
Sbjct: 510 KFLEAGIYEVPIIITDSGNP-PKSNISILRVKVCQCDSNGDCTDVHHHHH 558
Score = 123 bits (312), Expect = 8e-33
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 14/173 (8%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVV------PLHARTDVYIQVQNVNDNVPMTLDPVY 55
+ +D ET + LTV A++ + P + V + V +VN+N P
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPK 343
Query: 56 YAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
+ E + L A D D Q I Y +P ++ ID +G I+T LD
Sbjct: 344 IIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKL-SDPANWLKIDPVNGQITTI-AVLD 401
Query: 116 RE----NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHV 164
RE + +D+G P P+S T + I + D+NDNAP+
Sbjct: 402 RESPNVKNNIYNATFLASDNGIP-PMSGTGTLQIYLLDINDNAPQVLPQEAET 453
Score = 108 bits (273), Expect = 2e-27
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 58 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRK 113
+ EN G P +L D D + + Y ++ P F I+ SG +S T +
Sbjct: 8 NLPENSRGPFP-QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT-KP 65
Query: 114 LDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
LDRE A L D + + ++I+V D+NDN PEF ++ ++PE
Sbjct: 66 LDRELIARFHLRAHAVDINGN-QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPE 119
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 135 bits (341), Expect = 1e-39
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
++ + LD E Y L A + ++ I V + NDN P V+ +
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 61 ENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSGLISTTGRK 113
E +++++A+D D D + I+Y I + +PE F ++ +G+IS
Sbjct: 119 EGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG 178
Query: 114 LDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
LDRE+ + L V D LS+T + +I+V+D
Sbjct: 179 LDRESYPTYTLVVQAADLQGE-GLSTTAKAVITVKD 213
Score = 115 bits (291), Expect = 4e-32
Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 46/190 (24%)
Query: 54 VYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLIST 109
+ EN+ G P L + D + ++ Y I+ P F I+ +G +
Sbjct: 4 IAAISCPENEKGEFP-KNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 110 TGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE- 168
T + LDRE A+++L + ++I+V D NDN PEF Q + ++ E
Sbjct: 63 T-QPLDREAIAKYILYSHAVSSNGE-AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 169 -----------TRHRDEPL----SQVS-----------------------LISTTGRKLD 190
D+ + + ++ +IS LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 191 RENQAEHVLE 200
RE+ + L
Sbjct: 181 RESYPTYTLV 190
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 134 bits (339), Expect = 3e-39
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
+I+ + LD E K Y L A + P+ ++ I++ ++NDN P+ VY A +
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATV 115
Query: 60 VENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
E +VQ+ A+D D DP ++ Y I G P YF+++ +G+I T +D
Sbjct: 116 PEMADVGTFVVQVTATDAD-DPTYGNSAKVVYSILQGQP--YFSVESETGIIKTALLNMD 172
Query: 116 RENQAEHVLEVTVTD-DGAPAPLSSTTRVIISVED 149
REN+ ++ + + D G LS TT V I++ D
Sbjct: 173 RENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 120 bits (303), Expect = 7e-34
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 36/176 (20%)
Query: 59 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E +G V SD D D + Y +S F I+ +G I T ++LDRE
Sbjct: 9 LLEEYTGSDYQYVGKLHSDQD-RGDGSLKYILSGDGAGDLFIINENTGDIQAT-KRLDRE 66
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDEPLS 177
+ ++L + P+ + II + D+NDN P F ++ Y +PE +
Sbjct: 67 EKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVV 126
Query: 178 QVS---------------------------------LISTTGRKLDRENQAEHVLE 200
QV+ +I T +DREN+ ++ +
Sbjct: 127 QVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVV 182
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 130 bits (329), Expect = 1e-37
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
+ + LD E + L A D + D+ I V ++NDN P L V+ +
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 61 ENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPES----YFNIDIGSGLISTTGRK 113
E ++ + A D D DP+ + Y+I + P + F I+ +G I T
Sbjct: 119 EGSKPGTYVMTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG 177
Query: 114 LDRENQAEHVLEVTVTDDGAPAP--LSSTTRVIISVED 149
LDRE ++ L + TD LS+T +I+V D
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 112 bits (283), Expect = 6e-31
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 45/184 (24%)
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
+ EN G P +L D D + + Y ++ P F I+ SG +S T + L
Sbjct: 9 LPENSRGPFP-QELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT-KPL 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPETRHRDE 174
DRE A L D + + ++I+V D+NDN PEF ++ ++PE
Sbjct: 67 DRELIARFHLRAHAVDINGN-QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 175 PLSQVS--------------------------------------LISTTGRKLDRENQAE 196
+ V+ I T LDRE +
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ 185
Query: 197 HVLE 200
+ L
Sbjct: 186 YTLI 189
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 133 bits (336), Expect = 1e-37
Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 15/191 (7%)
Query: 1 NIRTSTILDVETKTHYW------LTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPV 54
+R D E + + + V I V++VND P ++
Sbjct: 51 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 110
Query: 55 --YYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGR 112
A + N P+ L A D D D I Y I F +D SG++ T
Sbjct: 111 LPMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDERSGVVRTR-G 167
Query: 113 KLDRENQAEHVLEVTVTDDGAPA---PLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPET 169
+ E+VL V D ST +S+ AP+F Y IPE
Sbjct: 168 TDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPEN 226
Query: 170 RHRDEPLSQVS 180
+ +D + +
Sbjct: 227 QKKDSDIISIK 237
Score = 115 bits (289), Expect = 7e-31
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 15/161 (9%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHAR----TDVYIQVQNVNDNVPMTLDPVYYA 57
+RT + Y L V A+D R + + + P P Y A
Sbjct: 163 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEA 221
Query: 58 QIVENQSGILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGSGLISTTGRKLDR 116
+I ENQ I+ + A D+ I Y + A G FNI SG++ ++LD
Sbjct: 222 EIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLA-KELDF 277
Query: 117 ENQAE---HVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNA 154
E+ + + L VT T+D S++ + I V DVNDNA
Sbjct: 278 EDLRQPHVYSLIVTATEDSGG--FSTSVDLTIRVTDVNDNA 316
Score = 92.1 bits (229), Expect = 3e-22
Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 45/180 (25%)
Query: 64 SGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSG--LISTTG-----RKLDR 116
S + P ++ ++ D D + + +++ + F I + + T G +K D
Sbjct: 1 SAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDY 60
Query: 117 ENQAEH------VLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQN--FYHVNIPE 168
E V+ + + + RVII V+DVND P F +
Sbjct: 61 EELGPEKTIDFWVIITNMGHNAGI-KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQL 119
Query: 169 TRHRDEPLSQV-------------SLIS----------------TTGRKLDRENQAEHVL 199
+ P+ + ++ T + E+VL
Sbjct: 120 NAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVL 179
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 127 bits (322), Expect = 1e-36
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 6/152 (3%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVE 61
+ LD ETK+ + + DH V IQV +VNDN P + Y +I E
Sbjct: 64 VWLRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPE 120
Query: 62 NQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRENQAE 121
N PI + A+D DL + Y +P +F ID G+++ ++LD E
Sbjct: 121 NTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARGIVTVI-QELDYEVTQA 177
Query: 122 HVLEVTVTDDGAPAPLSSTTRVIISVEDVNDN 153
+ L V TD PLS+ + I + D+ D
Sbjct: 178 YQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 111 bits (280), Expect = 2e-30
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 39/187 (20%)
Query: 44 NDNVPMTLDPVY--YAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNID 101
+ +P + + Y I E+ + QL A D D DP + + +S +F ++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDP---LVFGVSGEEASRFFAVE 58
Query: 102 IGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNF 161
+G++ + LDRE ++E +E +V+D T +V I V DVNDNAP F
Sbjct: 59 PDTGVVWLR-QPLDRETKSEFTVEFSVSDHQ----GVITRKVNIQVGDVNDNAPTFHNQP 113
Query: 162 YHVNIPE------------TRHRDE------------PLSQVSLISTTG-----RKLDRE 192
Y V IPE D P ++ S G ++LD E
Sbjct: 114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYE 173
Query: 193 NQAEHVL 199
+ L
Sbjct: 174 VTQAYQL 180
Score = 35.7 bits (83), Expect = 0.007
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 30/80 (37%)
Query: 151 NDNAPEFEQNFY--HVNIPE-----TR------------------HRDEPLSQVSLISTT 185
+ P F +F+ ++ I E + +E ++ T
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDT 61
Query: 186 G-----RKLDRENQAEHVLE 200
G + LDRE ++E +E
Sbjct: 62 GVVWLRQPLDRETKSEFTVE 81
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 121 bits (305), Expect = 2e-34
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQI 59
+I LD E K Y LT D L + I+V ++NDN P+ + ++ +
Sbjct: 54 DIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSV 113
Query: 60 VENQSGILPIVQLAASDGDLDPDQ----RISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
E + ++ A D D DP ++Y+I GN YF +D + T LD
Sbjct: 114 PEMSRLGTSVTKVTAEDAD-DPTVAGHATVTYQIIKGNE--YFTVDDSGVIF-TARADLD 169
Query: 116 RENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
RE+Q+ + + V D SST VII + D
Sbjct: 170 RESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 114 bits (287), Expect = 2e-31
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 39/177 (22%)
Query: 58 QIVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
I E LP + +L +S G+ + Y I + + F + G I +LD
Sbjct: 8 HIREEIDSPLPHHVGKLTSSVGN----KNAMYIIEGESANTIFKVQGYDGDIYAF-ERLD 62
Query: 116 RENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPET------ 169
RE +AE+ L + D L ++ II V D+NDNAP F Q ++ ++PE
Sbjct: 63 REKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTS 122
Query: 170 ------RHRDEP--------------------LSQVSLISTTGRKLDRENQAEHVLE 200
D+P + +I T LDRE+Q+ + +
Sbjct: 123 VTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDSGVIFTARADLDRESQSAYEII 179
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 120 bits (303), Expect = 7e-34
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 13/161 (8%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV 60
++ + LD ET Y L V D L + + V + NDN P+ + Y ++
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVM 118
Query: 61 ENQSGILPIVQLAASDGDLDPDQ---RISYKISAGNPE----SYFNIDIGSGLISTT--G 111
E ++++ A D D DP + Y I P+ + F ID G I T
Sbjct: 119 EGSPTGTTVMRMTAFDAD-DPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSP 177
Query: 112 RKLDREN--QAEHVLEVTVTDDGAPAP-LSSTTRVIISVED 149
LDRE ++ L + D L+ T I ++D
Sbjct: 178 ALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 110 bits (276), Expect = 7e-30
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 59 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDR 116
I ENQ P + ++ SD R++ K +P+ F I+ +G +S T R LDR
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVT-RTLDR 68
Query: 117 ENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
E A + L V TD L + + V D NDN P F + Y ++ E
Sbjct: 69 ETIATYQLYVETTDASGK-TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVME 119
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 123 bits (310), Expect = 4e-33
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ---NVNDNVPMTLDPVYYAQ 58
+RT + Y L V A+D R + + P P Y A+
Sbjct: 168 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAE 227
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISA-GNPESYFNIDIGSGLISTTGRKLDRE 117
I ENQ I+ + A D+ I Y + A G FNI SG++ ++LD E
Sbjct: 228 IPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLA-KELDFE 283
Query: 118 NQAE---HVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHV-NIPE 168
+ + + L VT T+D S++ + I V DVNDNAP+FE Y N+ E
Sbjct: 284 DLRQPHVYSLIVTATEDS-G-GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDE 336
Score = 118 bits (298), Expect = 2e-31
Identities = 43/178 (24%), Positives = 61/178 (34%), Gaps = 15/178 (8%)
Query: 2 IRTSTILDVETK------THYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPM-TLDPV 54
+R D E + + + + V I V++VND P P+
Sbjct: 57 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPL 116
Query: 55 YY-AQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRK 113
A + N P+ L A D D D I Y I F +D SG++ T G
Sbjct: 117 PMQAVVQLNAPPNTPVFTLQARDPDTDH--NIHYFIVRDRTGGRFEVDERSGVVRTRG-T 173
Query: 114 LDRENQAEHVLEVTVTDDGAPA---PLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPE 168
+ E+VL V D ST +S+ AP+F Y IPE
Sbjct: 174 DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPE 230
Score = 106 bits (266), Expect = 7e-27
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 1 NIRTSTILDVETKTH---YWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYA 57
++ + LD E Y L V A + D+ I+V +VNDN P P Y A
Sbjct: 273 IVKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNAPKFELPDYQA 331
Query: 58 QIV-ENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDR 116
V E+ I+++ A D D + I Y +S + +F +D +G+I ++LD
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVS----DDHFAVD-SNGIIVNN-KQLDA 385
Query: 117 EN-QAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
+N A + VT D G P P S V + ++
Sbjct: 386 DNNNAYYEFIVTAKDKGEP-PKSGVATVRVYTKN 418
Score = 98.5 bits (246), Expect = 5e-24
Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 48/187 (25%)
Query: 58 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLIS-------TT 110
++ + P ++ ++ D D + + +++ + F I + ++
Sbjct: 3 RVTRA---VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Query: 111 GRKLDRENQAE------HVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQN--FY 162
+K D E V+ + + + RVII V+DVND P F
Sbjct: 60 KKKWDYEELGPEKTIDFWVIITNMGHNAGI-KYTDNQRVIILVKDVNDEPPYFINRPLPM 118
Query: 163 HVNIPETRHRDEPLSQV-------------SLIS----------------TTGRKLDREN 193
+ + P+ + ++ T +
Sbjct: 119 QAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL 178
Query: 194 QAEHVLE 200
E+VL
Sbjct: 179 DMEYVLY 185
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 118 bits (297), Expect = 9e-33
Identities = 32/181 (17%), Positives = 52/181 (28%), Gaps = 26/181 (14%)
Query: 2 IRTSTILDVETKTHYW--------LTVFAQDHGVV------PLHARTDVYIQVQNVNDNV 47
+ LD + LTV+ + + N +
Sbjct: 67 LYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSF 126
Query: 48 PMTLD----------PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESY 97
P +I EN+ L P ++Y++ G
Sbjct: 127 PACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLP- 185
Query: 98 FNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEF 157
F S +ST LDRE + ++ L T ++V D +D+APEF
Sbjct: 186 FRSAPDSLEVSTR-WALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244
Query: 158 E 158
E
Sbjct: 245 E 245
Score = 75.3 bits (185), Expect = 2e-16
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 61/207 (29%)
Query: 53 PVYYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKI-----SAGNPESYFNIDIGSG 105
Y+ ++ +Q+ P++ + A + P R+ + + + ++ I +G
Sbjct: 6 DAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTG 65
Query: 106 LISTTGRKLDRE--------NQAEHVLEVTVTDDGAPAP-----LSSTTRVIISVEDVND 152
L+ R LD N+ +L V + +P + N
Sbjct: 66 LLYLQ-RSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNT 124
Query: 153 NAPE----------FEQNFYHVNIPETRHRDEPLSQV---------------SLIS---- 183
+ P F + I E R L+
Sbjct: 125 SFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGL 184
Query: 184 -----------TTGRKLDRENQAEHVL 199
+T LDRE + ++ L
Sbjct: 185 PFRSAPDSLEVSTRWALDREQREKYEL 211
Score = 50.3 bits (120), Expect = 1e-07
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDH-GVVPLHARTDVYIQVQNVNDNVP 48
+ T LD E + Y L H G + V + +D+ P
Sbjct: 194 EVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAP 242
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 97.3 bits (243), Expect = 3e-26
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 58 QIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRK 113
+ EN G P +L D + + Y ++ P F I+ SG +S T +
Sbjct: 10 NLPENSRGPFPQ-ELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT-KP 67
Query: 114 LDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEF 157
LDRE A L D + + ++I+V D+NDN PEF
Sbjct: 68 LDRELIARFHLRAHAVDINGN-QVENPIDIVINVIDMNDNRPEF 110
Score = 56.1 bits (136), Expect = 1e-10
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVP 48
+ + LD E + L A D + D+ I V ++NDN P
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 108
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 97.4 bits (243), Expect = 5e-26
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 59 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAG----NPESYFNIDIGSGLISTTGR 112
+ E + I ++ SD + +I+YK + P F + +G ++ T
Sbjct: 19 LREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT-S 76
Query: 113 KLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQN 160
LDRE +L D + + I V D+NDN P F Q+
Sbjct: 77 ILDREETPFFLLTGYALDARGN-NVEKPLELRIKVLDINDNEPVFTQD 123
Score = 57.3 bits (139), Expect = 6e-11
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVP 48
+ ++ILD E + LT +A D + ++ I+V ++NDN P
Sbjct: 71 ELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEP 118
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 94.9 bits (237), Expect = 5e-25
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 38 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPE-- 95
+ NDN P VY A + EN + PI+QL A+D D+ + +I Y A
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 96 SYFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAP 155
+D SG +S ++DRE + V D G P P + V+++++D NDN P
Sbjct: 62 RLLRLDETSGWLSVLH-RIDREEVNQLRFTVMARDRGQP-PKTDKATVVLNIKDENDNVP 119
Score = 50.6 bits (122), Expect = 1e-08
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVP 48
+ +D E TV A+D G P + V + +++ NDNVP
Sbjct: 73 LSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 46.3 bits (111), Expect = 5e-07
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 145 ISVEDVNDNAPEFEQNFYHVNIPE 168
S NDN+P FE++ Y ++ E
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAE 25
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 81.3 bits (201), Expect = 4e-20
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 59 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDR 116
I ENQ P + ++ SD R++ K +P+ F I+ +G +S T R LDR
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVT-RTLDR 68
Query: 117 ENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
E A + L V TD L + + V D
Sbjct: 69 ETIATYQLYVETTDASGK-TLEGPVPLEVIVID 100
Score = 43.1 bits (102), Expect = 5e-06
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
++ + LD ET Y L V D L + + V
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVI 99
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 80.9 bits (200), Expect = 5e-20
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 58 QIVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLD 115
I ENQ P + ++ SD ++ K P+ F I+ SG +S T + LD
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVT-KALD 66
Query: 116 RENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
RE + L+V TD+ + + I V D
Sbjct: 67 REAIPSYQLQVETTDENGK-TIEGPVDLEILVID 99
Score = 42.7 bits (101), Expect = 7e-06
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
+ + LD E Y L V D + D+ I V
Sbjct: 58 EVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVI 98
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 79.4 bits (196), Expect = 2e-19
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 59 IVENQSGILP--IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDR 116
I ENQ P + ++ S+G R+S K +P+ F I+ SG +S T R LDR
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVT-RPLDR 67
Query: 117 ENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
E A + LEV VTD + R+ ISV D
Sbjct: 68 EAIANYELEVEVTDLSGK-IIDGPVRLDISVID 99
Score = 41.6 bits (98), Expect = 2e-05
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
++ + LD E +Y L V D + + I V
Sbjct: 58 DVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVI 98
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 79.0 bits (195), Expect = 3e-19
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 59 IVENQSGILP-IVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E +G P V SD D D I Y +S F ID +G I ++LDRE
Sbjct: 10 VLEEYTGTDPLYVGKLHSDMD-RGDGSIKYILSGEGAGIVFTIDDTTGDIHAI-QRLDRE 67
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
++++ L D P+ + II ++D
Sbjct: 68 ERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 39.3 bits (92), Expect = 1e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQ 41
+I LD E ++ Y L A D P+ ++ I++Q
Sbjct: 57 DIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQ 98
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 77.1 bits (190), Expect = 1e-18
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 59 IVENQSGILPI-VQLAASDGDLDPDQRISYKISAGNPESYFNIDIGSGLISTTGRKLDRE 117
++E SG PI V +D D ++I Y +S + F I+ +G I ++LDRE
Sbjct: 9 VLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITGDIHAI-KRLDRE 66
Query: 118 NQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
+AE+ L D PL + II V+D
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 38.2 bits (89), Expect = 3e-04
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGV-VPLHARTDVYIQVQ 41
+I LD E K Y LT A D PL ++ I+VQ
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQ 97
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 74.0 bits (182), Expect = 2e-17
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 53 PVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLIS 108
+ EN+ G P L + D + ++ Y I+ P F I+ +G +
Sbjct: 7 VIPPISCPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLK 65
Query: 109 TTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
T LDRE A + L + ++I+V D
Sbjct: 66 VT-EPLDRERIATYTLFSHAVSSNGN-AVEDPMEILITVTD 104
Score = 45.1 bits (107), Expect = 1e-06
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
++ + LD E Y L A + ++ I V
Sbjct: 63 WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 103
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 73.3 bits (181), Expect = 5e-17
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 38 IQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPES- 96
+ NDN P+ + I EN ++QL A+D D+ + I Y A +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 97 --YFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVN 151
F ++ +GLI+ LDRE A H + V +D + V I+V DVN
Sbjct: 62 KRLFALNNTTGLITVQR-SLDREETAIHKVTVLASDGS---STPARATVTINVTDVN 114
Score = 47.1 bits (113), Expect = 3e-07
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 145 ISVEDVNDNAPEFEQNFYHVNIPE 168
S NDN P F++ V+IPE
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPE 25
Score = 35.5 bits (83), Expect = 0.004
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVN 44
I LD E + +TV A D P A V I V +VN
Sbjct: 74 ITVQRSLDREETAIHKVTVLASDGSSTPARAT--VTINVTDVN 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 1e-05
Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 77/227 (33%)
Query: 48 PMTLDPVYYAQIVENQSGI---------LPIVQL----AASDGDLDPDQRISYKIS---- 90
+L P +EN G+ L Q+ ++ L +++ IS
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE--ISLVNG 373
Query: 91 ------AGNPES-Y-FNIDI-----GSGL----ISTTGRKLDRENQAEHVLEVTVTDDGA 133
+G P+S Y N+ + SGL I + RKL N+ L V
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---FLPVA------ 424
Query: 134 PAP-----LSSTTRVIISVEDVNDNAPEFEQNFYHVNIP----ET----RHRDEPLSQ-- 178
+P L + +I +D+ N F + IP R +S+
Sbjct: 425 -SPFHSHLLVPASDLI--NKDLVKNNVSFNAK--DIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 179 VSLISTTGR----KLDRENQAEHVLETGSGESE------ATLETGSG 215
V I + +A H+L+ G G + + G+G
Sbjct: 480 VDCI-IRLPVKWETTTQ-FKATHILDFGPGGASGLGVLTHRNKDGTG 524
Score = 45.0 bits (106), Expect = 1e-05
Identities = 50/277 (18%), Positives = 79/277 (28%), Gaps = 98/277 (35%)
Query: 18 LTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPV------YY-AQIVENQ------- 63
LT F + L D++ + TL Y A+I+ +
Sbjct: 88 LTEFENCY----LEG-NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 64 SGILPIVQLAASDGDLDPDQRISYKISA-----GNPESYFNIDIGSGL--ISTTGRKLDR 116
S + A +G+ ++ A GN + YF L + T L
Sbjct: 143 SALFR----AVGEGN--------AQLVAIFGGQGNTDDYF-----EELRDLYQTYHVLVG 185
Query: 117 E--NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNI------PE 168
+ + L L TT D F Q NI P
Sbjct: 186 DLIKFSAETLS----------ELIRTTL---------DAEKVFTQGL---NILEWLENPS 223
Query: 169 TRHRDEPL--SQVS--LISTTGRKLDRENQAEH------VLETGSGESEATLETGSGESE 218
+ L +S LI Q H +L GE + L+ +G S+
Sbjct: 224 NTPDKDYLLSIPISCPLIGVI--------QLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 219 ATLEVLF--ENSTWENFHETNITG-DFLF----RAVQ 248
+ + E +WE+F + LF R +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Score = 35.8 bits (82), Expect = 0.014
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 146 SVEDVNDNAPEFEQNFYHVNIPETRHRDEPLSQVSLIS-TTGRKLDRENQAEHVLETGSG 204
+ +DV + A ++ Y +I + + P++ G+++ REN + + ET
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRI-RENYSAMIFETIVD 1698
Query: 205 ESEATLETGSGESEATLEVLFENSTWENFHETNIT 239
T + +E + F + T T
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEK-GLLSATQFT 1732
Score = 34.3 bits (78), Expect = 0.036
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 36/102 (35%)
Query: 64 SGILPI---VQLAASDGDL-------DPDQRISYKISAGNPESYFNIDIGSGLISTTGRK 113
+ ++ I V++ G D R +Y + A NP + +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-----VAASF------- 1821
Query: 114 LDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAP 155
++ L+ V + T ++ + VN N
Sbjct: 1822 ------SQEALQYVV------ERVGKRTGWLVEI--VNYNVE 1849
Score = 30.8 bits (69), Expect = 0.45
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 32/144 (22%)
Query: 136 PLS---STTRVIISV-EDVNDNAPEFEQNFYHVNIPE-TR---HRDEPLSQVSLIST--- 184
PL+ + ++ V A + ++ F +PE T DEP + L+
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 185 -TGRKLDREN--QAEHVLETGSGESEATLETGS----------GESEATL----EVL--- 224
++ Q + VL E E G+ E++ TL E++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 225 FENSTWENFHETNITGDFLFRAVQ 248
+ LFRAV
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVG 150
Score = 29.6 bits (66), Expect = 1.0
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 25/70 (35%)
Query: 22 AQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIV--------ENQSGIL------ 67
A + V + RT +++ VN NV Q V + + +L
Sbjct: 1825 ALQYVVERVGKRTGWLVEI--VNYNVE-------NQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 68 --PIVQLAAS 75
I++L S
Sbjct: 1876 KIDIIELQKS 1885
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 38/252 (15%), Positives = 78/252 (30%), Gaps = 68/252 (26%)
Query: 16 YWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVPMTLDPVYYAQIVENQSGILPIVQLAAS 75
+WL + + +++ + +DP + ++ + + L I + A
Sbjct: 185 FWLN-LKNCN-------SPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 76 DGDLDPDQRISYKIS------AGNPE--SYFNIDIGSGLISTTGRKLDRENQAEHVLEVT 127
L + Y+ N + + F ++ ++ TT R ++
Sbjct: 234 LRRLLKSKP--YENCLLVLLNVQNAKAWNAF--NLSCKILLTT-R--FKQ---------- 276
Query: 128 VTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQ-----NFYHVNI---PETRHRDEPLSQV 179
VTD LS+ T IS++ + E + P P +
Sbjct: 277 VTDF-----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-L 330
Query: 180 SLISTTGRK-LDRENQAEHVLETGSGESEATLETGSGESEATLEVLFENSTWENFHE--- 235
S+I+ + R L + +HV + E++L VL + F
Sbjct: 331 SIIAESIRDGLATWDNWKHV------NCDKLTTI----IESSLNVLEPAEYRKMFDRLSV 380
Query: 236 ----TNITGDFL 243
+I L
Sbjct: 381 FPPSAHIPTILL 392
Score = 33.7 bits (76), Expect = 0.053
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 34/117 (29%)
Query: 138 SSTTRVIISVEDV--NDNAPEFEQNFYHVNIPETRHRDEPLSQVSLISTTGRKLDRENQA 195
S TR+ I D NDN F + Y+V+ R +P ++ + L A
Sbjct: 106 SMMTRMYIEQRDRLYNDN-QVFAK--YNVS------RLQPYLKLR------QALLELRPA 150
Query: 196 EHVLETGSGESEATLETGSGESEATLEVLFENST---------WENFHETNITGDFL 243
++VL G GSG++ L+V W N N L
Sbjct: 151 KNVLIDGVL--------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 40.7 bits (96), Expect = 5e-05
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 74 ASDGDLDPDQRISYK--ISAGNPESYFNIDIGSGLISTTGRKLDRE---NQAEH---VLE 125
A D L + I+ I + + ++ SG + + LDRE +
Sbjct: 31 AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEK-LDREELCGSTNPCILHFQ 89
Query: 126 VTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQN 160
V + P+ + I ++DVND+APEF ++
Sbjct: 90 VLLKS-----PVQ-FIQGEIQLQDVNDHAPEFMED 118
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 33.6 bits (76), Expect = 0.028
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 155 PEFEQNFYHVNIPETRHRDEPLSQVSLISTTGRK 188
F ++ Y +P+ H +PL V + ++
Sbjct: 34 TGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKR 67
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 33.9 bits (77), Expect = 0.040
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 70 VQLAASDGDLDPD-QRISYKISAGNPESYFNIDI---GSGLISTTGRKLDRENQAEHVLE 125
V L AS G DPD ++Y S ++ + S S + + +
Sbjct: 357 VSLDAS-GSSDPDGDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSNAGGKDIHIL 415
Query: 126 VTVTDDGAPAPLSSTTRVIISVE 148
+T+ D+G+P L + RV+I+V+
Sbjct: 416 LTLRDNGSP-NLYAYRRVVINVQ 437
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.065
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 10/36 (27%)
Query: 117 ENQAEHVLEVTV---TDDGAPA-PLSSTTRVIISVE 148
E QA L+ ++ DD APA + +T +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT------ME 47
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 31.0 bits (71), Expect = 0.10
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 74 ASDGDLDPDQRISYK--ISAGNPESYFNIDIGSGLISTTGRKLDREN---QAEH---VLE 125
A D L+ + + +++ + +++ +G++ R +DRE ++ LE
Sbjct: 23 AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSR-IDREELCGRSAECSIHLE 81
Query: 126 VTVTDDGAPAPLSSTTRVIISVEDVNDN 153
V V PL V + V D+NDN
Sbjct: 82 VIVDR-----PLQ-VFHVEVEVRDINDN 103
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein
interaction domain, growth arrest, signaling protein;
NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB:
1z1v_A
Length = 85
Score = 25.4 bits (55), Expect = 6.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 219 ATLEVLFENSTWENFHETNITGDFL 243
+TLEV + + E +I GD L
Sbjct: 23 STLEVEETDPLCQRLRENDIVGDLL 47
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping
protein, barbed END regulation, carmil family
conformational change; 1.70A {Gallus gallus} PDB:
3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Length = 244
Score = 26.8 bits (59), Expect = 7.4
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 119 QAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFE 158
+ HV+EV G A T+ V++ ++ +
Sbjct: 149 DSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMN 188
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP,
actin filaments, uncapping, actin-filament regulators,
protein-protein comple, actin capping, actin- binding;
1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B
1izn_B
Length = 277
Score = 26.4 bits (58), Expect = 8.6
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 119 QAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFE 158
+ HV+EV G A T+ V++ ++ +
Sbjct: 149 DSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMN 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.368
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,664,512
Number of extensions: 212751
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 100
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.3 bits)