RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy669
(248 letters)
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 60.1 bits (144), Expect = 2e-12
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 44 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASD---GDLDPDQRISYKISAGNPE----S 96
NDN P V+ + E ++ ++A+D + +SY I +PE +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 97 YFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
F I+ +G+IS G LDRE E+ L V TD LS + II + D
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGA-GLSVEGKAIIQITD 113
Score = 33.9 bits (76), Expect = 0.004
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 151 NDNAPEFEQNFYHVNIPE 168
NDN P+F Q+ + ++ E
Sbjct: 2 NDNRPKFTQDVFRGSVRE 19
Score = 33.5 bits (75), Expect = 0.007
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 3 RTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQV 40
T LD E Y LTV A D L IQ+
Sbjct: 74 LIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQI 111
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 58.2 bits (139), Expect = 1e-11
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 44 NDNVPMTLDPVYYAQIVENQSGILPIVQLAA---SDGDLDPDQRISYKISAGNPES---- 96
NDN P V+ + E +++++A D + I+Y I + +PE
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 97 YFNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
F ++ +G+IS LDRE+ + L V D LS+T + +I+V+D
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGE-GLSTTAKAVITVKD 112
Score = 33.9 bits (76), Expect = 0.004
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 151 NDNAPEFEQNFYHVNIPE 168
NDN PEF Q + ++ E
Sbjct: 1 NDNRPEFTQEVFEGSVAE 18
Score = 29.7 bits (65), Expect = 0.14
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 11 ETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
E+ Y L V A D L I V+
Sbjct: 81 ESYPTYTLVVQAADLQGEGLSTTAKAVITVK 111
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 56.6 bits (135), Expect = 3e-11
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 44 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLD--PDQRISYKISAGNP----ESY 97
NDN P L V+ + E ++ + A D D + + Y+I + P +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 98 FNIDIGSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAP--LSSTTRVIISVED 149
F I+ +G I T LDRE ++ L + TD LS+T +I+V D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 33.5 bits (75), Expect = 0.005
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 151 NDNAPEFEQNFYHVNIPE 168
NDN PEF ++ ++PE
Sbjct: 1 NDNRPEFLHQVWNGSVPE 18
Score = 28.9 bits (63), Expect = 0.25
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 11 ETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVND 45
E Y L + A D P + ++ V V D
Sbjct: 80 EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 53.6 bits (128), Expect = 4e-10
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISAGN----PESYFNIDIGSGLISTTGRKL 114
+ EN+ G P +L + D ++ Y I+ P+ F I+ +G + T
Sbjct: 9 VSENERGPFP-KRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL- 66
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE ++VL + P+ + I+V D
Sbjct: 67 DREEYDKYVLSSHAVSENGS-PVEEPMEITINVID 100
Score = 26.3 bits (57), Expect = 1.5
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 2 IRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
+ + LD E Y L+ A P+ ++ I V
Sbjct: 60 MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVI 99
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 53.2 bits (127), Expect = 5e-10
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISA----GNPESYFNIDIGSGLISTTGRKL 114
EN+ G P L + D + ++ Y I+ P F I+ +G + T L
Sbjct: 12 CPENEKGPFP-KNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVT-EPL 69
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE A + L + ++I+V D
Sbjct: 70 DRERIATYTLFSHAVSSNGN-AVEDPMEILITVTD 103
Score = 27.0 bits (59), Expect = 1.0
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 11 ETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
E Y L A + ++ I V
Sbjct: 72 ERIATYTLFSHAVSSNGNAVEDPMEILITVT 102
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 52.7 bits (125), Expect = 9e-10
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 45 DNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIGS 104
+ P + V + E+ S I+ L A D D Q++SY +P + ++ +
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY-FIGNDPARWLTVNKDN 59
Query: 105 GLISTTGRKLDRE----NQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDV 150
G+++ LDRE + + + VTDDG + T +I+ V DV
Sbjct: 60 GIVTGN-GNLDRESEYVKNNTYTVIMLVTDDGVS-VGTGTGTLILHVLDV 107
Score = 32.3 bits (72), Expect = 0.015
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 1 NIRTSTILDVETKTH----YWLTVFAQDHGVVPLHARTDVYIQVQNV 43
+ + LD E++ Y + + D GV + + V +V
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 30.0 bits (66), Expect = 0.10
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 152 DNAPEFEQNFYHVNIPE 168
+ AP F V++ E
Sbjct: 1 NEAPFFVPAVSRVDVSE 17
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 52.3 bits (124), Expect = 1e-09
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 44 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNID-- 101
NDN P+ Y A + EN+ G + N +FNI
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 102 -IGSGLISTTGRKLDRENQAEHVLEVTVTD--DGAPAPLSSTTRVIISVEDV 150
+ I TT + LD E + ++VL++TV + + +ST V ++VEDV
Sbjct: 62 PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
Score = 33.8 bits (76), Expect = 0.005
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 151 NDNAPEFEQNFYHVNIPE 168
NDNAP F+ Y +PE
Sbjct: 2 NDNAPIFDPKTYTALVPE 19
Score = 30.7 bits (68), Expect = 0.057
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQD---HGVVPLHARTDVYIQVQNV 43
+ T+ LD E + Y L + ++ V + V + V++V
Sbjct: 68 ILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 49.8 bits (118), Expect = 7e-09
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 59 IVENQSGILPIVQLAASDGDLDPDQRISYKISA----GNPESYFNIDIGSGLISTTGRKL 114
+ EN G P +L D + + Y ++ P F I+ SG + + + L
Sbjct: 11 LPENSRGPFP-QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQL-SVTKPL 68
Query: 115 DRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVED 149
DRE A L D + + ++I+V D
Sbjct: 69 DRELIARFHLRAHAVDINGN-QVENPIDIVINVID 102
Score = 28.7 bits (63), Expect = 0.27
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQ 41
+ + LD E + L A D + D+ I V
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVI 101
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 45.1 bits (105), Expect = 4e-07
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 44 NDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDIG 103
NDN P+ V+ + + L SD D+ P+ + + + ++
Sbjct: 1 NDNGPVPSPRVF--TMCDQNP---EPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 104 SGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAP 155
S S + + ++ + V ++D T V +V A
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNN---PQLTVVNATVCSCEGKAI 104
Score = 28.5 bits (62), Expect = 0.29
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 151 NDNAPEFEQNFYHVNIPET 169
NDN P + +
Sbjct: 1 NDNGPVPSPRVFTMCDQNP 19
Score = 27.3 bits (59), Expect = 0.71
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 2/48 (4%)
Query: 1 NIRTSTILDVETKTHYWLTVFAQDHGVVPLHARTDVYIQVQNVNDNVP 48
+ K Y + V D P T V V +
Sbjct: 59 TSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAI 104
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 44.2 bits (103), Expect = 2e-06
Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 11/137 (8%)
Query: 43 VNDNVPMTLDPVYYAQIVENQSGILPIVQLAASDGDLDPDQRISYKISAGNPESYFNIDI 102
+ + VY A + ++ P++ + S+ + + + +
Sbjct: 6 IALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSE-------PADFKV 58
Query: 103 GSGLISTTGRKLDRENQAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFE-QNF 161
R + L + V +S E P E
Sbjct: 59 DEDGTVYAVRSFPLTAEQAKFLIYAQDKETQE---KWQVAVNLSREPTLTEEPMKEPHEI 115
Query: 162 YHVNIPETRHRDEPLSQ 178
+ P + Q
Sbjct: 116 EEIVFPRQLAKHSGALQ 132
Score = 34.6 bits (78), Expect = 0.004
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 149 DVNDNAPEFEQNFYHVNIPE 168
++ F ++ Y +P+
Sbjct: 5 EIALCKTGFPEDVYSAVLPK 24
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon
marinus) [TaxId: 7757]}
Length = 149
Score = 28.1 bits (62), Expect = 0.55
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 128 VTDDGAPAPLSSTTRVII--SVEDVNDNAPEFEQNFYH---VNIPETRHRDEPLSQVS 180
+ D G+ APLS+ + I + V + + P + ++
Sbjct: 2 IVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLT 59
>d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish
(Eptatretus burgeri) [TaxId: 7764]}
Length = 146
Score = 26.2 bits (57), Expect = 2.3
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 128 VTDDGAPAPLSSTTRVII--SVEDVNDNAPEFEQNFYH 163
+ D G L+ + I + ++ N
Sbjct: 2 IIDQGPLPTLTDGDKKAINKIWPKIYKEYEQYSLNILL 39
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis
[TaxId: 633]}
Length = 94
Score = 24.8 bits (54), Expect = 5.4
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 123 VLEVTVTDDGAPAPLSSTTRVIISVEDVNDNA 154
L V DGAPA + V +V D
Sbjct: 2 TLTAAVIGDGAPANGKTAITVEFTVADFEGKP 33
>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 70
Score = 23.6 bits (51), Expect = 8.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 219 ATLEVLFENSTWENFHETNITGDFL 243
+TLEV + + E +I GD L
Sbjct: 14 STLEVEETDPLCQRLRENDIVGDLL 38
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 24.8 bits (54), Expect = 9.7
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 119 QAEHVLEVTVTDDGAPAPLSSTTRVIISVEDVNDNAPEFEQNFYHVNIPET 169
+A +L+ ++ D L + II +++ QNF + +
Sbjct: 131 KASKILKKHMSKDPTTQKLRNDLLNIIREKNLAH---PVIQNFSYETFQQK 178
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.368
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 869,630
Number of extensions: 37874
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 34
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.0 bits)