BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6694
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FH5|H Chain H, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 198
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 22 LRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISYSARNGTG 81
L + ++D GSYT+ ++ G F I + N+ E + Y AR+
Sbjct: 39 LEWVATISDGGSYTYYPDSVKGRFTISRDNAKNNL--YLQMSSLKSEDTAMYYCARDAMD 96
Query: 82 FQASGTIATPVENARLNPSYTTVKPPAHHPFLKRPILILKAMVPEVKVLT 131
+ GT+ T V A+ PP+ +P ++K PE +T
Sbjct: 97 YWGQGTLVT-VSAAK-------TTPPSVYPLAVTLGCLVKGYFPEPVTVT 138
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 3 RLLLVCTQEVTEEQSDVTILRQINRLNDDGSYTFGYEAADGSFKIETRDVGG---NVKGM 59
R++ VC ++ E R+I +++ G DG KI R + G N +
Sbjct: 52 RIIFVCCDDLWEHDLKSGSTRKI--VSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADL 108
Query: 60 FGFVDENGELKRISYSARNGTG 81
+ + ENGE+KRI+Y + TG
Sbjct: 109 YFYNGENGEIKRITYFSGKSTG 130
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 3 RLLLVCTQEVTEEQSDVTILRQINRLNDDGSYTFGYEAADGSFKIETRDVGG---NVKGM 59
R++ VC ++ E R+I +++ G DG KI R + G N +
Sbjct: 26 RIIFVCCDDLWEHDLKSGSTRKI--VSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADL 82
Query: 60 FGFVDENGELKRISYSARNGTG 81
+ + ENGE+KRI+Y + TG
Sbjct: 83 YFYNGENGEIKRITYFSGKSTG 104
>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium
Diphtheriae At 1.99 A Resolution
Length = 377
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 6 LVCTQEVTEEQSDVTILRQINRLNDDGSYTFGYEAADGSFKIET 49
L C Q + SD +Q++ + DG+ T G AA+ +++ T
Sbjct: 230 LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGT 273
>pdb|2J4W|H Chain H, Structure Of A Plasmodium Vivax Apical Membrane Antigen 1-
Fab F8.12.19 Complex
pdb|2J5L|C Chain C, Structure Of A Plasmodium Falciparum Apical Membrane
Antigen 1-Fab F8.12.19 Complex
Length = 225
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 22 LRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISYSARNGT- 80
L + ++D SYT+ ++ G F I + N+ E I Y AR+G
Sbjct: 45 LEWVATISDGNSYTYYVDSVKGRFTISRDNAKNNL--YLQMSSLKSEDTAIYYCARDGPT 102
Query: 81 --------GFQASGTIATPVENARLNPSYTTVKP 106
G+ GT+ T E PS + P
Sbjct: 103 DSSGYGGFGYWGQGTLVTVSEAKTTPPSVYPLAP 136
>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|B Chain B, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|C Chain C, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
pdb|3O4R|D Chain D, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR
FAMILY) MEMBER 4 (Dhrs4)
Length = 261
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 80 TGFQASGTIATPVENARLNPSYTTVKPPAHHPF-------LKRPILILKAMVPEVK 128
T + G I V NA +NP + ++ + +K P L+ KA+VPE++
Sbjct: 85 TAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEME 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,211,069
Number of Sequences: 62578
Number of extensions: 176878
Number of successful extensions: 471
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 11
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)