Query psy6694
Match_columns 136
No_of_seqs 130 out of 1183
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:39:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k57_A Putative lipoprotein; s 77.4 1.6 5.5E-05 27.8 2.5 38 36-73 5-43 (61)
2 2rd1_A Putative outer membrane 76.3 1.8 6E-05 27.7 2.5 39 35-73 4-43 (62)
3 2rb6_A Uncharacterized protein 75.9 1.8 6.3E-05 27.5 2.5 38 36-73 5-43 (61)
4 2jn0_A Hypothetical lipoprotei 74.2 1.9 6.5E-05 27.4 2.2 37 37-73 6-43 (61)
5 2ra2_A Putative lipoprotein; X 68.0 2.1 7.2E-05 27.5 1.4 38 36-73 6-44 (64)
6 3bdu_A Putative lipoprotein; X 66.2 3 0.0001 26.6 1.8 39 35-73 4-43 (62)
7 2f1e_A Protein APAG; APAG prot 58.0 32 0.0011 24.3 6.3 22 52-73 93-114 (127)
8 1xvs_A Protein APAG; MCSG APC2 56.0 36 0.0012 24.0 6.3 22 52-73 92-113 (126)
9 1tza_A APAG protein, SOR45; st 50.9 38 0.0013 24.2 5.8 22 52-73 92-113 (134)
10 1xq4_A Protein APAG; all beta 50.0 41 0.0014 24.2 5.8 22 52-73 97-118 (139)
11 1twu_A Hypothetical protein YY 43.6 13 0.00046 24.5 2.3 18 58-76 117-134 (139)
12 4gym_A Glyoxalase/bleomycin re 37.2 30 0.001 23.0 3.3 16 60-75 118-133 (149)
13 3bid_A UPF0339 protein NMB1088 34.4 45 0.0015 20.9 3.5 21 25-45 4-24 (64)
14 1b69_A Protein (integrase); in 32.6 39 0.0013 21.7 3.0 17 28-44 17-33 (69)
15 3ua0_A Fibroin heavy chain; th 29.9 56 0.0019 23.5 3.7 11 3-13 13-23 (134)
16 3rri_A Glyoxalase/bleomycin re 24.2 57 0.0019 20.9 2.8 19 59-77 112-130 (135)
17 2kyw_A Adhesion exoprotein; st 23.3 80 0.0027 20.9 3.3 38 32-78 31-68 (87)
18 3e5d_A Putative glyoxalase I; 21.3 67 0.0023 20.0 2.6 15 60-74 113-127 (127)
19 3lhn_A Lipoprotein; structural 20.6 2.2E+02 0.0076 19.8 6.8 42 22-72 45-88 (126)
No 1
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=77.37 E-value=1.6 Score=27.76 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=25.3
Q ss_pred EEEecCCCCEEEEeeCCC-CeEEEEEEEECCCCcEEEEE
Q psy6694 36 FGYEAADGSFKIETRDVG-GNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 36 f~yet~dG~~~~E~g~~~-~~v~GsYsy~~pdG~~~~V~ 73 (136)
|--.+.||..-.-.|.+. ..-.|-|+|.|.+|+.++|+
T Consensus 5 yvitt~DG~~IvT~gKP~~D~dTGmysY~D~~G~~~qIn 43 (61)
T 2k57_A 5 TVITLNDGREIQAVDTPKYDEESGFYEFKQLDGKQTRIN 43 (61)
T ss_dssp EEEEESSSCEEEESSCCEECTTTCEEEEEBTTSCEEEEE
T ss_pred eEEEeCCCcEEEcCCCccccCCCCCEEEEcCCCCEEEEc
Confidence 445667775443334332 23469999999999998875
No 2
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=76.32 E-value=1.8 Score=27.68 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=26.6
Q ss_pred eEEEecCCCCEEEEeeCCCC-eEEEEEEEECCCCcEEEEE
Q psy6694 35 TFGYEAADGSFKIETRDVGG-NVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 35 ~f~yet~dG~~~~E~g~~~~-~v~GsYsy~~pdG~~~~V~ 73 (136)
.|--.+.||..-.-.|.+.. .-.|.|+|.|.+|+.++|+
T Consensus 4 ~yvitt~DG~~IvT~gKP~~D~dTGm~sY~D~~G~~~qIn 43 (62)
T 2rd1_A 4 NYVMTTKNGQTIVTQGKPQLDKETGMTSYTDQEGNQREIN 43 (62)
T ss_dssp EEEEEETTSCEEEEESCCEEETTTTEEEEECTTSCEEEEE
T ss_pred ceEEEeCCCcEEEcCCCcceeCCCCCEEEEcCCCCEEEEc
Confidence 35556778854444443321 3469999999999998875
No 3
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=75.88 E-value=1.8 Score=27.50 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=25.2
Q ss_pred EEEecCCCCEEEEeeCCCC-eEEEEEEEECCCCcEEEEE
Q psy6694 36 FGYEAADGSFKIETRDVGG-NVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 36 f~yet~dG~~~~E~g~~~~-~v~GsYsy~~pdG~~~~V~ 73 (136)
|--.+.||..-.-.|.+.. .-.|-|+|.|.+|+.++++
T Consensus 5 yvitT~DG~~IvT~GKP~~D~dTGm~sY~D~~G~~~qIn 43 (61)
T 2rb6_A 5 YIMSTKDGKMITSDSKPKLDKTTGMYLYYDEDGREVMIK 43 (61)
T ss_dssp EEEEETTSCEEEESSCCEEETTTTEEEEECTTSCEEEEE
T ss_pred EEEEeCCCcEEEcCCCccccCCCCCEEEEcCCCCEEEEc
Confidence 4456777754433343321 3469999999999998875
No 4
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=74.20 E-value=1.9 Score=27.44 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=23.6
Q ss_pred EEecCCCCEEEEeeCCC-CeEEEEEEEECCCCcEEEEE
Q psy6694 37 GYEAADGSFKIETRDVG-GNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 37 ~yet~dG~~~~E~g~~~-~~v~GsYsy~~pdG~~~~V~ 73 (136)
--.+.||..-.-.|.+. ..-.|-|+|.|.+|+.++++
T Consensus 6 vitT~DG~~IvT~GKP~~D~dTGm~sY~D~~G~~~qIn 43 (61)
T 2jn0_A 6 VMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQIN 43 (61)
T ss_dssp EEEETTSCEEEBCCCCEEETTTTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCcEEEcCCCccccCCCCCEEEEcCCCCEEEEc
Confidence 34566774333333222 13459999999999998875
No 5
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=67.98 E-value=2.1 Score=27.48 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=24.3
Q ss_pred EEEecCCCCEEEEeeCCC-CeEEEEEEEECCCCcEEEEE
Q psy6694 36 FGYEAADGSFKIETRDVG-GNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 36 f~yet~dG~~~~E~g~~~-~~v~GsYsy~~pdG~~~~V~ 73 (136)
|--.+.||..-.-.|.+. ..-.|-|+|.|.+|+.++|+
T Consensus 6 yVitt~DG~~IvT~GKP~~D~dTGm~sY~D~~G~~~qIn 44 (64)
T 2ra2_A 6 YVMHTNDGRSIVTDGKPQTDNDTGMISYKDANGNKQQIN 44 (64)
T ss_dssp EEEEETTSCEEECSSCCEECTTTCSEEEECTTSCEEEEC
T ss_pred EEEEeCCCcEEEcCCCccccCCCCCEEEEcCCCCEEEEc
Confidence 445667775333333221 13469999999999998774
No 6
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=66.16 E-value=3 Score=26.56 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=25.5
Q ss_pred eEEEecCCCCEEEEeeCCC-CeEEEEEEEECCCCcEEEEE
Q psy6694 35 TFGYEAADGSFKIETRDVG-GNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 35 ~f~yet~dG~~~~E~g~~~-~~v~GsYsy~~pdG~~~~V~ 73 (136)
.|--.+.||..-.-.|.+. ..-.|.|+|.|.+|+.++|+
T Consensus 4 ~yvitt~DG~~IvT~gKP~~D~dTGmysY~D~~G~~~qIn 43 (62)
T 3bdu_A 4 NYVLHTNDGRTIVAEGKPKVDDETGMISYTDAYGQQQQIN 43 (62)
T ss_dssp EEEEEETTSCEEEEESCCEECTTTSSEEEEBTTSCEEEEC
T ss_pred ceEEEECCCcEEEcCCCcceeCCCCCEEEEcCCCCEEEEc
Confidence 3455677785444444332 23468999999999988774
No 7
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=58.01 E-value=32 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.6
Q ss_pred CCCeEEEEEEEECCCCcEEEEE
Q psy6694 52 VGGNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 52 ~~~~v~GsYsy~~pdG~~~~V~ 73 (136)
+.|..+|+|.++++||..+.|.
T Consensus 93 p~G~M~G~y~m~~~~G~~F~v~ 114 (127)
T 2f1e_A 93 EQGQMQGHYDMVADDGTEFIAP 114 (127)
T ss_dssp SCEEEEEEEEEEETTCCEEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEEE
Confidence 5688999999999999877664
No 8
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=55.98 E-value=36 Score=24.03 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.4
Q ss_pred CCCeEEEEEEEECCCCcEEEEE
Q psy6694 52 VGGNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 52 ~~~~v~GsYsy~~pdG~~~~V~ 73 (136)
+.|..+|+|.++++||..+.|.
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v~ 113 (126)
T 1xvs_A 92 PVGVMQGQYLMIDEQGESFTVE 113 (126)
T ss_dssp SEEEEEEEEEEECTTSCEEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEEE
Confidence 4578999999999999877664
No 9
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=50.94 E-value=38 Score=24.21 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=18.2
Q ss_pred CCCeEEEEEEEECCCCcEEEEE
Q psy6694 52 VGGNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 52 ~~~~v~GsYsy~~pdG~~~~V~ 73 (136)
+.|..+|+|.++++||..+.|.
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v~ 113 (134)
T 1tza_A 92 PFGIMYGTYGMVSESGEHFNAI 113 (134)
T ss_dssp SEEEEEEEEEEEETTCCEEEEE
T ss_pred CceEEEEEEEEEECCCCEEEEE
Confidence 4578999999999999876654
No 10
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=49.99 E-value=41 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.2
Q ss_pred CCCeEEEEEEEECCCCcEEEEE
Q psy6694 52 VGGNVKGMFGFVDENGELKRIS 73 (136)
Q Consensus 52 ~~~~v~GsYsy~~pdG~~~~V~ 73 (136)
+.|..+|+|.++++||..+.|.
T Consensus 97 p~G~M~G~y~m~~~~G~~F~v~ 118 (139)
T 1xq4_A 97 PIGTMRGTYHCVGENGIPFEVP 118 (139)
T ss_dssp SEEEEEEEEEEEETTSCEEEEE
T ss_pred CceEEEEEEEEEeCCCCEEEEE
Confidence 4578999999999999876654
No 11
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=43.61 E-value=13 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.3
Q ss_pred EEEEEECCCCcEEEEEEEe
Q psy6694 58 GMFGFVDENGELKRISYSA 76 (136)
Q Consensus 58 GsYsy~~pdG~~~~V~Y~A 76 (136)
|.| +.||||...++....
T Consensus 117 g~~-~~DPdG~~iel~~~~ 134 (139)
T 1twu_A 117 GVT-IEDPDGWRIVFMNSK 134 (139)
T ss_dssp EEE-EECTTCCEEEEESSC
T ss_pred CeE-EECCCCCEEEEEEcC
Confidence 558 999999998887543
No 12
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=37.24 E-value=30 Score=23.04 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.5
Q ss_pred EEEECCCCcEEEEEEE
Q psy6694 60 FGFVDENGELKRISYS 75 (136)
Q Consensus 60 Ysy~~pdG~~~~V~Y~ 75 (136)
.-+.||||...++.|-
T Consensus 118 ~~f~DPDGn~iEi~~~ 133 (149)
T 4gym_A 118 RSFHDLDGHLWEVMWM 133 (149)
T ss_dssp EEEECTTCCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEE
Confidence 4478999999999885
No 13
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=34.45 E-value=45 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=16.5
Q ss_pred eeecCCCCCeeEEEecCCCCE
Q psy6694 25 INRLNDDGSYTFGYEAADGSF 45 (136)
Q Consensus 25 ~~~~~~dGsY~f~yet~dG~~ 45 (136)
+...+.+|.|.|.+...||..
T Consensus 4 ei~~~~~G~frfrLka~NGev 24 (64)
T 3bid_A 4 EIYKDAKGEYRWRLKAANHEI 24 (64)
T ss_dssp EEEECTTSCEEEEEECTTSCE
T ss_pred EEEECCCCCEEEEEEeCCCCE
Confidence 344568899999999999953
No 14
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=32.58 E-value=39 Score=21.68 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=11.1
Q ss_pred cCCCCCeeEEEecCCCC
Q psy6694 28 LNDDGSYTFGYEAADGS 44 (136)
Q Consensus 28 ~~~dGsY~f~yet~dG~ 44 (136)
+..||.|.|.|...+|.
T Consensus 17 qR~dG~Y~yry~d~~Gk 33 (69)
T 1b69_A 17 QRKDGRYLYKYIDSFGE 33 (69)
T ss_dssp ECSSSCEEEEEECTTSS
T ss_pred EccCCcEEEEEEcCCCC
Confidence 34677777777666663
No 15
>3ua0_A Fibroin heavy chain; the double-layered-sheets, fibroin folding initiation, prote; 3.00A {Bombyx mori}
Probab=29.86 E-value=56 Score=23.49 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=0.0
Q ss_pred hHHHHHhcccc
Q psy6694 3 RLLLVCTQEVT 13 (136)
Q Consensus 3 klvlvc~la~~ 13 (136)
.||++||++..
T Consensus 13 ~~VILCCALQY 23 (134)
T 3ua0_A 13 TFVILCCALQY 23 (134)
T ss_dssp -----------
T ss_pred hhhhhhHHHHH
Confidence 36788887653
No 16
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.20 E-value=57 Score=20.91 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=15.8
Q ss_pred EEEEECCCCcEEEEEEEee
Q psy6694 59 MFGFVDENGELKRISYSAR 77 (136)
Q Consensus 59 sYsy~~pdG~~~~V~Y~AD 77 (136)
++-+.||||...++..-.|
T Consensus 112 ~~~~~DPdGn~iel~~~~~ 130 (135)
T 3rri_A 112 TFFLIDPSNNLLEFKYYFD 130 (135)
T ss_dssp EEEEECTTCCEEEEEEESS
T ss_pred EEEEECCCCCEEEEEEECC
Confidence 5678899999999987666
No 17
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=23.32 E-value=80 Score=20.89 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCeeEEEecCCCCEEEEeeCCCCeEEEEEEEECCCCcEEEEEEEeeC
Q psy6694 32 GSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISYSARN 78 (136)
Q Consensus 32 GsY~f~yet~dG~~~~E~g~~~~~v~GsYsy~~pdG~~~~V~Y~AD~ 78 (136)
-+-+++++..|| -++.+..++ -++.||+.++++|.||+
T Consensus 31 EtVk~~i~iPdg--YE~Vggd~~-------~~~~~~~~~~~~~~~~~ 68 (87)
T 2kyw_A 31 DSTTYTVTIPDG--YEYVGTDGG-------VVSSDGKTVTITFAADD 68 (87)
T ss_dssp CEEEEECCCCTT--EEEEEEESS-------EECTTSSEEEEECCSSS
T ss_pred CeeeeccccCCC--ceEEcCCCC-------EEecCCCEEEEEEeecC
Confidence 345666666666 222232233 45689999999999994
No 18
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=21.29 E-value=67 Score=20.04 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=11.7
Q ss_pred EEEECCCCcEEEEEE
Q psy6694 60 FGFVDENGELKRISY 74 (136)
Q Consensus 60 Ysy~~pdG~~~~V~Y 74 (136)
.-+.||||...++.|
T Consensus 113 ~~~~DPdG~~iel~~ 127 (127)
T 3e5d_A 113 SVVLDPEGNRIEITW 127 (127)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEECCCCCEEEEeC
Confidence 447899999888764
No 19
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=20.55 E-value=2.2e+02 Score=19.77 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=24.3
Q ss_pred EEEeeecCCCCCeeEE--EecCCCCEEEEeeCCCCeEEEEEEEECCCCcEEEE
Q psy6694 22 LRQINRLNDDGSYTFG--YEAADGSFKIETRDVGGNVKGMFGFVDENGELKRI 72 (136)
Q Consensus 22 ~~~~~~~~~dGsY~f~--yet~dG~~~~E~g~~~~~v~GsYsy~~pdG~~~~V 72 (136)
++..-.++.||+|... |...+. ..-..+|.|.|.+ +|..+++
T Consensus 45 I~ttLtL~~Dgty~l~~~Yl~~~~--------~~~~~~G~~~w~~-~g~~i~L 88 (126)
T 3lhn_A 45 IQTTLTLQADNSFELKSIYLGKDE--------SIFKVAGKFDWDS-NGSKITL 88 (126)
T ss_dssp EEEEEEECTTSEEEEEEEEESTTC--------EEEEEEEEEEECT-TSCEEEE
T ss_pred eEEEEEECCCCCEEEEEEECCCCC--------CCeEeeeEEEEeC-CCCEEEE
Confidence 4444556788877654 222221 1224589999954 5666665
Done!