RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6694
(136 letters)
>gnl|CDD|215886 pfam00379, Chitin_bind_4, Insect cuticle protein. Many insect
cuticular proteins include a 35-36 amino acid motif
known as the R&R consensus. The extensive conservation
of this region led to the suggestion that it functions
to bind chitin. Provocatively, it has no sequence
similarity to the well-known cysteine-containing
chitin-binding domain found in chitinases and some
peritrophic membrane proteins. Chitin binding has been
shown experimentally for this region. Thus arthropods
have two distinct classes of chitin binding proteins,
those with the chitin-binding domain found in lectins,
chitinases and peritrophic membranes (cysCBD) and those
with the cuticular protein chitin-binding domain
(non-cysCBD).
Length = 51
Score = 50.7 bits (122), Expect = 7e-10
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 34 YTFGYEAADGSFKIETR---DVGGNVKGMFGFVDENGELKRISYSARNGTGF 82
Y+FGYE +DG + E R D GG VKG + +VD +G+L+ ++Y A + GF
Sbjct: 1 YSFGYETSDGKTQEEGRGTEDDGGVVKGSYSYVDPDGKLRTVTYVA-DENGF 51
>gnl|CDD|225768 COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid
transport and metabolism].
Length = 507
Score = 28.9 bits (65), Expect = 0.86
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 21 ILRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISYSARNGT 80
+L Q+N++ + G G+ K G + DE G +Y A N T
Sbjct: 194 VLEQLNKIKQAEATGKG-TQVTGTTKYINLYEPG---LTYQLSDEPGAGYVKTYDANNTT 249
Query: 81 GFQASGTIATPVENARLNPSYTTVKP 106
T V N N ++ +
Sbjct: 250 SLP-----GTLVRNLGGNFVPSSDEA 270
>gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate
synthase family protein. This model represents
uncharacterized proteins related to 2-isopropylmalate
synthases and homocitrate synthases but phylogenetically
distint. Each species represented in the seed alignment
also has a member of a known family of 2-isopropylmalate
synthases [Unknown function, General].
Length = 526
Score = 28.3 bits (63), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 20 TILRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGF 62
TIL +I L G + +EAA+ SF++ R G+ K F F
Sbjct: 357 TILAKIKELEQQG---YHFEAAEASFELLMRQAMGDRKPYFLF 396
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport
systems, periplasmic component [Amino acid transport and
metabolism].
Length = 366
Score = 27.8 bits (62), Expect = 1.7
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 20 TILRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISYSARNG 79
++ +I D GY F + R+ G K + G E + I+ G
Sbjct: 194 ALVAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLIGGDGAGTAEFEEIA-----G 248
Query: 80 TGFQASGTIATPVENARLNP 99
G +G +AT +P
Sbjct: 249 AGGAGAGLLATAYSTPDDSP 268
>gnl|CDD|117933 pfam09391, DUF2000, Protein of unknown function (DUF2000). This is
a family of proteins of unknown function. The structure
of one of the proteins in this family has been shown to
adopt an alpha beta fold.
Length = 133
Score = 27.1 bits (61), Expect = 2.0
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 79 GTGFQASGTIATPVENARLNPSYTTVKPPAHHPFLKRPILILKA 122
G G A I P E+A N H +PI+ILKA
Sbjct: 27 GLGAAAPELIGEPYEDADGNL---------HLGISGQPIIILKA 61
>gnl|CDD|237068 PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate
synthase family transferase; Provisional.
Length = 524
Score = 27.0 bits (61), Expect = 3.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 21 ILRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMF 60
+L +I L +G Y F EAA+ SF++ R G F
Sbjct: 361 LLERIKELEAEG-YQF--EAAEASFELLLRRELGEYPPFF 397
>gnl|CDD|107384 cd06389, PBP1_iGluR_AMPA_GluR2, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR2 subunit of the AMPA receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR2 subunit of the AMPA
(alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic
acid) receptor. The AMPA receptor is a member of the
glutamate-receptor ion channels (iGluRs) which are the
major mediators of excitatory synaptic transmission in
the central nervous system. AMPA receptors are composed
of four types of subunits (GluR1, GluR2, GluR3, and
GluR4) which combine to form a tetramer and play an
important role in mediating the rapid excitatory
synaptic current. Furthermore, this N-terminal domain of
the iGluRs has homology with LIVBP, a bacterial
periplasmic binding protein, as well as with the
structurally related glutamate-binding domain of the
G-protein-coupled metabotropic receptors (mGluRs).
Length = 370
Score = 26.9 bits (59), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 52 VGGNVKGM------FGFVDENGELKRISYSARNGTGFQ 83
+G +VKG GF D G+L +I + N +GFQ
Sbjct: 199 IGKHVKGYHYIIANLGFTD--GDLSKIQFGGANVSGFQ 234
>gnl|CDD|235191 PRK03995, PRK03995, hypothetical protein; Provisional.
Length = 267
Score = 26.5 bits (59), Expect = 4.5
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 21 ILRQINRLNDDGSYTFGYEA 40
+LR + +L + + +EA
Sbjct: 113 LLRNLKKLAKELGFEVTFEA 132
>gnl|CDD|239802 cd04275, ZnMc_pappalysin_like, Zinc-dependent metalloprotease,
pappalysin_like subfamily. The pregnancy-associated
plasma protein A (PAPP-A or pappalysin-1) cleaves
insulin-like growth factor-binding proteins 4 and 5,
thereby promoting cell growth by releasing bound growth
factor. This model includes pappalysins and related
metalloprotease domains from all three kingdoms of
life. The three-dimensional structure of an archaeal
representative, ulilysin, has been solved.
Length = 225
Score = 26.5 bits (59), Expect = 5.0
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 17 SDVTILRQINRLNDDGSYTFGYEAADGSFKI-ETRDVGGNVKGMFGFVDENGELKRI 72
SD I QI+ LNDD S F + T + +F +K
Sbjct: 23 SDAQITDQIDVLNDDYSGLNAGVDLGIEFVLAGTTRTVNSAWPVFAGSGTEDAMKSA 79
>gnl|CDD|222680 pfam14323, GxGYxYP, GxGYxY sequence motif in domain of unknown
function. This family carries a characteristic sequence
motif, GxGYxYP, but is of unknown function. Associated
families are sugar-processing domains.
Length = 463
Score = 26.5 bits (59), Expect = 5.2
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 94 NARLNPSYTTVKPPAHHPFLKRPILILKAMV 124
RLN S P L+ + KA+V
Sbjct: 119 WPRLNHSLIIGLSPDRFGALRDYAIATKALV 149
>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family
contains several NIF3 (NGG1p interacting factor 3)
protein homologues. NIF3 interacts with the yeast
transcriptional coactivator NGG1p which is part of the
ADA complex, the exact function of this interaction is
unknown.
Length = 237
Score = 26.5 bits (59), Expect = 5.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 108 AHHPFLKRPILILKAMVPEVKVLTKL 133
HHP + +P+ + P+ + + KL
Sbjct: 59 THHPLIFKPLKRITGDDPKGRRILKL 84
>gnl|CDD|239227 cd02897, A2M_2, Proteins similar to alpha2-macroglobulin (alpha
(2)-M). This group also contains the pregnancy zone
protein (PZP). Alpha(2)-M and PZP are broadly specific
proteinase inhibitors. Alpha (2)-M is a major carrier
protein in serum. The structural thioester of alpha
(2)-M, is involved in the immobilization and entrapment
of proteases. PZP is a trace protein in the plasma of
non-pregnant females and males which is elevated in
pregnancy. Alpha (2)-M and PZ bind to placental
protein-14 and may modulate its activity in T-cell
growth and cytokine production contributing to fetal
survival. It has been suggested that thioester bond
cleavage promotes the binding of PZ and alpha (2)-M to
the CD91 receptor clearing them from circulation.
Length = 292
Score = 26.0 bits (58), Expect = 7.4
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 23 RQINRLNDDGSY-TFGYEAADGS 44
RQ+ + DGSY FG GS
Sbjct: 57 RQLTYKHSDGSYSAFGESDKSGS 79
>gnl|CDD|218763 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit
Ribophorin II. This family contains eukaryotic
Ribophorin II (RPN2) proteins. The mammalian
oligosaccharyltransferase (OST) is a protein complex
that effects the cotranslational N-glycosylation of
newly synthesised polypeptides, and is composed of the
following proteins: ribophorins I and II (RI and RII),
OST48, and Dadl, N33/IAP, OST4, STT3. The family also
includes the SWP1 protein from yeast. In yeast the
oligosaccharyltransferase complex is composed 7 or 8
subunits, SWP1, being one of them.
Length = 636
Score = 25.9 bits (57), Expect = 8.3
Identities = 11/67 (16%), Positives = 20/67 (29%)
Query: 4 LLLVCTQEVTEEQSDVTILRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGFV 63
+ Q V + + +L ++N D F V+G ++
Sbjct: 308 ASVKLVQAVKSKSTKAAVLSKVNLTFDLDGDVFELNFMSAKPASGYYTFVVEVEGDHRYI 367
Query: 64 DENGELK 70
ELK
Sbjct: 368 YNTVELK 374
>gnl|CDD|218075 pfam04414, tRNA_deacylase, D-aminoacyl-tRNA deacylase. Several
aminoacyl-tRNA synthetases have the ability to transfer
the D-isomer of their amino acid onto their cognate
tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester
bond between the polynucleotide and the D-amino acid,
thereby preventing the accumulation of such
mis-acylated and metabolically inactive tRNA molecules.
Length = 214
Score = 25.7 bits (57), Expect = 8.7
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 21 ILRQINRLNDDGSYTFGYEA 40
+LR + +L + + +EA
Sbjct: 62 LLRALAKLAPELGFEVTFEA 81
>gnl|CDD|227282 COG4946, COG4946, Uncharacterized protein related to the
periplasmic component of the Tol biopolymer transport
system [Function unknown].
Length = 668
Score = 25.9 bits (57), Expect = 9.2
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 53 GGNVKGMFGFVDENGELKRISYSARNGT---GFQASGTI 88
++ E+GE KRI+Y R T G+ G I
Sbjct: 103 SLQTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEI 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.388
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,011,665
Number of extensions: 626915
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 23
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)