RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6694
         (136 letters)



>2wst_A Putative fiber protein; viral protein; 3.20A {Porcine adenovirus 4}
          Length = 208

 Score = 26.9 bits (59), Expect = 2.2
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 32  GSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISYSARNGTGFQASGTIATP 91
           G    G  +  GS    +      +   F   D +G +   S   R   G +   T+ TP
Sbjct: 68  GGTVIGTLSVQGSLTNPSTGQTLGMNLYF---DADGNVLSESNLVRGSWGMKDQDTLVTP 124

Query: 92  VENAR 96
           + N +
Sbjct: 125 IANGQ 129


>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
           beta barrel, transport prote; 2.71A {Escherichia coli}
          Length = 277

 Score = 26.4 bits (59), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 92  VENARLNPSYTTVKPP 107
           VE AR+N +YT V  P
Sbjct: 121 VETARINLAYTKVTSP 136


>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
           membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
           f.46.1.1 PDB: 2v4d_A 1t5e_A
          Length = 369

 Score = 26.5 bits (59), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 92  VENARLNPSYTTVKPP 107
           VE AR+N  YT V  P
Sbjct: 128 VEQARINLRYTKVLSP 143


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 4.8
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 31/60 (51%)

Query: 65  ENGELKRISYSARNGTGFQASGTIATPVENARLNPSYTTVKPPAHHPFLKRPILILKAMV 124
           E   LK++          QAS  +    ++A           PA         L +KA +
Sbjct: 18  EKQALKKL----------QASLKLYAD-DSA-----------PA---------LAIKATM 46


>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
          genomics, joint center structural genomics, JCSG; HET:
          MSE; 1.65A {Cytophaga hutchinsonii}
          Length = 321

 Score = 26.0 bits (58), Expect = 4.9
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 16/45 (35%)

Query: 51 DVGG-NVKGMFGFVDENGELKRISYSARNGTGFQASGTIATPVEN 94
          DVGG +VK  FG V   GE+             Q +    T    
Sbjct: 25 DVGGTSVK--FGLVTPEGEI-------------QNATRFMTADWV 54


>2hb0_A CFA/I fimbrial subunit E; CFAE, adhesin, ETEC, traveler'S disease,
           cell adhesion; 2.30A {Escherichia coli}
          Length = 369

 Score = 25.9 bits (56), Expect = 4.9
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 37  GYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISY 74
           GY     S +I  +D      G F     N + K + Y
Sbjct: 220 GYSTNSSSLEIRFQDDNSKSDGKFYLKKINDDSKELVY 257


>3f83_A Fusion of the minor pilin CFAE and major pilin CF; ETEC, E. coli,
           CFA/I, CFAB, diarrhea, fimbriae, projection, fimbrium,
           cell adhesion; 2.30A {Escherichia coli}
          Length = 519

 Score = 25.9 bits (56), Expect = 5.8
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 37  GYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISY 74
           GY     S +I  +D      G F     N + K + Y
Sbjct: 220 GYSTNSSSLEIRFQDDNSKSDGKFYLKKINDDSKELVY 257


>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
           1090} SCOP: b.52.1.4 PDB: 2g6g_A
          Length = 422

 Score = 25.7 bits (55), Expect = 7.1
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 65  ENGELKRISYSARNGTGFQASGTI 88
            +G+  RI Y+ +N   + + G  
Sbjct: 251 PSGKYIRIGYADKNEHPYVSIGRY 274


>3m4f_A Endo-1,4-beta-xylanase; family 11 endoxylanase, acidophilic
          adaptation, structure/FU relationship, glycosidase,
          hydrolase; HET: CXS; 1.89A {Scytalidium acidophilum}
          Length = 205

 Score = 25.2 bits (55), Expect = 7.7
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 29 NDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRISYSARNGTGFQASG 86
           +     F Y    G++          V G+ G+    G  + I+YSA     + A G
Sbjct: 35 YNGDVADFQYNEGAGTYTCGWDGSTDFVVGL-GW--STGAARDITYSA----TYNAGG 85


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0786    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,117,074
Number of extensions: 121282
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 12
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.7 bits)