RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6694
         (136 letters)



>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing
          endo-beta-galactosidase, GngC, C-terminal domain
          {Clostridium perfringens [TaxId: 1502]}
          Length = 131

 Score = 25.4 bits (55), Expect = 2.1
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 6/72 (8%)

Query: 14 EEQSDVTILRQINRLNDDGSYTFGYEAADGSFKIETRDVGGNVKGMFGFVDENGELKRIS 73
          EE +D      I    ++ +  +  E  DG   ++     G    +              
Sbjct: 17 EENNDKVSYGDITL-KNEKNAKWSKEYRDGYTLLKNN-ETGEYLNIENQTGYIE----HG 70

Query: 74 YSARNGTGFQAS 85
             +     Q S
Sbjct: 71 KVPKTWWSAQWS 82


>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 135

 Score = 24.6 bits (54), Expect = 3.5
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 78  NGTGFQASGTIATPVENARLNPSYTTVKPPAHHPFLKRPILILKAMVPEVKVLTKLRVR 136
           N T F  SG I          P Y       ++P   +PI+++     + + L K+  R
Sbjct: 21  NVTAFLMSG-IVAQTGEIIGEP-YRDGAGNVYNPLSIQPIVVMAT---DQEALRKIHQR 74


>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
           transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
           485]}
          Length = 402

 Score = 24.9 bits (54), Expect = 4.1
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 65  ENGELKRISYSARNGTGFQASGTI 88
            +G+  RI Y+ +N   + + G  
Sbjct: 231 PSGKYIRIGYADKNEHPYVSIGRY 254


>d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein
           transglycosylase A, MLTA {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 365

 Score = 24.9 bits (54), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 65  ENGELKRISYSARNGTGFQASGTI 88
            +G +KRI+Y+A+ G  F   G +
Sbjct: 191 PDGAIKRITYAAKAGHVFSPIGRL 214


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,699
Number of extensions: 22379
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 4
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)