BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6698
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR 90
ELL+ L Y TT + + V+K H ++ D YVK+ L + + +S+ KT V++
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAK-KRISKKKTHVKK 75
Query: 91 GQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWN 150
PN +F E FVF + L ++++ V D + + ++IG LG + HW
Sbjct: 76 CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG-GHWK 134
Query: 151 EMCKVKGEQLARWHILC 167
E+C Q+A+WH+LC
Sbjct: 135 EICDFPRRQIAKWHMLC 151
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 6/148 (4%)
Query: 24 SMLHGG-----VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSG 78
+L GG + EL L Y T G + + +IK S+ + + +T D YVK L+S G
Sbjct: 127 DILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISE-G 185
Query: 79 QEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQ 138
+ + + KTS+++ NP + E VF VA + +V L ++V D + ++IG +G
Sbjct: 186 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 245
Query: 139 NSTSEEELAHWNEMCKVKGEQLARWHIL 166
+ HW EM + + WH L
Sbjct: 246 EAADPHGREHWAEMLANPRKPVEHWHQL 273
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVK+ LL ++ +T V R NP+F ETF F V L L+ L SVYD
Sbjct: 42 DPYVKIYLLPDRKKKF---QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98
Query: 126 KKKQLIG 132
+ LIG
Sbjct: 99 SRHDLIG 105
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 6/148 (4%)
Query: 24 SMLHGG-----VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSG 78
+L GG + EL L Y T G + + +IK S+ + + +T D YVK L+S G
Sbjct: 128 DILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISE-G 186
Query: 79 QEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQ 138
+ + + KTS+++ NP + E VF VA + +V L ++V D + ++IG +G
Sbjct: 187 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 246
Query: 139 NSTSEEELAHWNEMCKVKGEQLARWHIL 166
+ HW EM + + WH L
Sbjct: 247 EAADPHGREHWAEMLANPRKPVEHWHQL 274
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVK+ LL ++ +T V R NP+F ETF F V L L+ L SVYD
Sbjct: 43 DPYVKIYLLPDRKKKF---QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 99
Query: 126 KKKQLIG 132
+ LIG
Sbjct: 100 SRHDLIG 106
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
ELLL L YN + I + +IK + + + + D YVK+ L+ + + + +R
Sbjct: 4 ELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN 63
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP+F E+F F + L + T++++V D+ L + +IG L S E+ HW +
Sbjct: 64 L-NPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS-GPGEVKHWKD 121
Query: 152 MCKVKGEQLARWHIL 166
M + +A+WH L
Sbjct: 122 MIARPRQPVAQWHQL 136
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR 90
++L+ L Y+ G + + +I+ H D +VKL L G++ ++ KT +++
Sbjct: 24 GKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKK-AKHKTQIKK 82
Query: 91 GQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWN 150
NP F E F + + L+ +L +SV+D K IG LG S E L HW
Sbjct: 83 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-SAKGERLKHWY 141
Query: 151 EMCKVKGEQLARWHIL 166
E K K +++ RWH L
Sbjct: 142 ECLKNKDKKIERWHQL 157
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR 90
++L+ L Y+ G + + +I+ H + D +VKL L G++ ++ KT +++
Sbjct: 24 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKK-AKHKTQIKK 82
Query: 91 GQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWN 150
NP F E F + + L+ +L +SV+D K IG LG S E L HW
Sbjct: 83 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-SAKGERLKHWY 141
Query: 151 EMCKVKGEQLARWHIL 166
E K K +++ RWH L
Sbjct: 142 ECLKNKDKKIERWHQL 157
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR 90
++L+ L Y+ G + + +I+ H + D +VKL L G++ ++ KT +++
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKK-AKHKTQIKK 60
Query: 91 GQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWN 150
NP F E F + + L+ +L +SV+D K IG LG S E L HW
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-SAKGERLKHWY 119
Query: 151 EMCKVKGEQLARWHIL 166
E K K +++ RWH L
Sbjct: 120 ECLKNKDKKIERWHQL 135
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 28 GGVAELL----LGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSR 83
GG+ E L L Y T G++ + +++ + + + + D YVK+ L+ + G+ + +
Sbjct: 5 GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKRLKK 63
Query: 84 AKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143
KT++++ NP + E+F F+V + V +VV+V D + K IG +G NST
Sbjct: 64 KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG- 122
Query: 144 EELAHWNEMCKVKGEQLARWHIL 166
EL HW++M +A+WH L
Sbjct: 123 AELRHWSDMLANPRRPIAQWHTL 145
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ ++ L Y T G++ + +++ + + + + D YVK+ L+ + G+ + + KT+++
Sbjct: 4 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKRLKKKKTTIK 62
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHW 149
+ NP + E+F F+V + V +VV+V D + K IG +G NST EL HW
Sbjct: 63 KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG-AELRHW 121
Query: 150 NEMCKVKGEQLARWHIL 166
++M +A+WH L
Sbjct: 122 SDMLANPRRPIAQWHTL 138
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ ++ L Y T G++ + +++ + + + + D YVK+ L+ + G+ + + KT+++
Sbjct: 3 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKRLKKKKTTIK 61
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHW 149
+ NP + E+F F+V + V +VV+V D + K IG +G NST EL HW
Sbjct: 62 KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG-AELRHW 120
Query: 150 NEMCKVKGEQLARWHIL 166
++M +A+WH L
Sbjct: 121 SDMLANPRRPIAQWHTL 137
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ ++ L Y T G++ + +++ + + + + D YVK+ L+ + G+ + + KT+++
Sbjct: 136 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKRLKKKKTTIK 194
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHW 149
+ NP + E+F F+V + V +VV+V D + K IG +G NST EL HW
Sbjct: 195 KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG-AELRHW 253
Query: 150 NEMCKVKGEQLARWHIL 166
++M +A+WH L
Sbjct: 254 SDMLANPRRPIAQWHTL 270
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ +L L Y+ ++ + +I+ + + M D YVK+ LL ++ +T V
Sbjct: 5 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVH 61
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAH- 148
R NP+F E F F+V L+ TLV++VYD K +IG F + N+ + H
Sbjct: 62 RKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV---DFGHV 118
Query: 149 ---WNEMCKVKGEQLARWHILC 167
W ++ + E+ + +C
Sbjct: 119 TEEWRDLQSAEKEEQEKLGDIC 140
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ +L L Y+ ++ + +I+ + + M D YVK+ LL + + +T V
Sbjct: 20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK---KFETKVH 76
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS 142
R NP+F E F F+V L TLV++VYD K +IG F + N+
Sbjct: 77 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ +L L Y+ ++ + +I+ + + M D YVK+ LL + + +T V
Sbjct: 28 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK---KFETKVH 84
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS 142
R NP+F E F F+V L TLV++VYD K +IG F + N+
Sbjct: 85 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 137
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ +L L Y+ ++ + +I+ + + M D YVK+ LL ++ +T V
Sbjct: 20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVH 76
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS 142
R NP+F E F F+V L TLV++VYD K +IG F + N+
Sbjct: 77 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ +L L Y+ ++ + +I+ + + M D YVK+ LL ++ +T V
Sbjct: 3 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVH 59
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS 142
R NP+F E F F+V L TLV++VYD K +IG F + N+
Sbjct: 60 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 112
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 29 GVAELLLGLSYNGTTGRIF-IEVIKGSHFRNVAMTRAPDTYVKLML-LSSSGQEMSRAKT 86
G+ E + GLS + RI ++V+ G + A D YVKL L ++ +E++ +T
Sbjct: 5 GLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQT 64
Query: 87 SVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG 132
+ NP + E F F+V + S+ L+ V+D L + +G
Sbjct: 65 KTIKKTLNPKWNEEFYFRV---NPSNHRLLFEVFDENRLTRDDFLG 107
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 33 LLLGLSYNGTTGRIFIEVIKGSH---FRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVR 89
+ L Y T + + V K H + + A R+ + YVK LL ++ R KTS++
Sbjct: 12 IAFSLKYEQQTQSLVVHV-KECHQLAYADEAKKRS-NPYVKTYLLPDKSRQGKR-KTSIK 68
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG 132
R NPL+ ET +++ L+ TL SV+ + +G
Sbjct: 69 RDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLG 111
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
+ YVK+ LL + + +T V+R P+F+E + F++ TL+++V D
Sbjct: 55 NPYVKICLLPD---QKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKF 111
Query: 126 KKKQLIGWFSLGQNSTSEEELAHW 149
+ +IG S+ + HW
Sbjct: 112 SRHCVIGKVSVPLCEVDLVKGGHW 135
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVKL L+ + +++ KT + NP++ ETFVF + + + L V V+D
Sbjct: 42 DPYVKLKLIPDP-RNLTKQKTRTVKATLNPVWNETFVFNLKPGDV-ERRLSVEVWDWDRT 99
Query: 126 KKKQLIGWFSLG 137
+ +G S G
Sbjct: 100 SRNDFMGAMSFG 111
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 35.8 bits (81), Expect = 0.011, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVKL L+ E S+ KT + NP + ETF FQ+ D L V ++D
Sbjct: 194 DPYVKLKLIPDPKSE-SKQKTKTIKSSLNPEWNETFRFQLKESD-KDRRLSVEIWDWDLT 251
Query: 126 KKKQLIGWFSLGQNSTSEEELAHW 149
+ +G S G + + + W
Sbjct: 252 SRNDFMGSLSFGISELQKAGVDGW 275
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVKL L+ E S+ KT R NP + E+F F++ D L V ++D
Sbjct: 39 DPYVKLKLIPDPKNE-SKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 96
Query: 126 KKKQLIGWFSLG 137
+ +G S G
Sbjct: 97 TRNDFMGSLSFG 108
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVKL L+ E S+ KT R NP + E+F F++ D L V ++D
Sbjct: 38 DPYVKLKLIPDPKNE-SKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 95
Query: 126 KKKQLIGWFSLG 137
+ +G S G
Sbjct: 96 TRNDFMGSLSFG 107
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVKL L+ E S+ KT R NP + E+F F++ D L V ++D
Sbjct: 40 DPYVKLKLIPDPKNE-SKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 97
Query: 126 KKKQLIGWFSLGQNSTSEEELAHWNEM 152
+ G S G + + + W ++
Sbjct: 98 TRNDFXGSLSFGVSELXKXPASGWYKL 124
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRA--PDTYVKLMLLSSSGQEMSRAKT 86
G + L +SY G +FI V+ H +++ P+ YVK LL + + S+ KT
Sbjct: 7 GSGAVKLSVSYRN--GTLFIMVM---HIKDLVTEDGADPNPYVKTYLLPDT-HKTSKRKT 60
Query: 87 SVRRGQPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLG-QNSTSEE 144
+ R NP F E V+ + L L +SV +SL++ +G +L ++ +
Sbjct: 61 KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK 120
Query: 145 ELAHWNEMC 153
E W ++
Sbjct: 121 ETVKWYQLT 129
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D YVKL L+ E S+ KT + NP + ETF FQ+ D L V ++D
Sbjct: 53 DPYVKLKLIPDPKSE-SKQKTKTIKCSLNPEWNETFRFQLKESD-KDRRLSVEIWDWDLT 110
Query: 126 KKKQLIGWFSLG 137
+ +G S G
Sbjct: 111 SRNDFMGSLSFG 122
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSV 88
+ + + YN + ++++K + D +VK+ LL ++ +T V
Sbjct: 11 NLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL---ETKV 67
Query: 89 RRGQPNPLFKETFVFQVALFH-LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEEL- 146
+R NP + ETF+F+ + + L + V D + IG S+ N ++
Sbjct: 68 KRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQ 127
Query: 147 AHWNEM 152
W ++
Sbjct: 128 TFWKDL 133
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 34 LLGLSYNGTTGRIF-IEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQ 92
+ GL + RI + VI G + A D YV++ L ++ +T +
Sbjct: 9 VFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS 68
Query: 93 PNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG 132
NP + E +F+V H L+ V+D L + +G
Sbjct: 69 LNPKWNEEILFRV---HPQQHRLLFEVFDENRLTRDDFLG 105
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKS 124
D Y+K+ +L ++ + KT V R +P F ETF F + + ++ L ++
Sbjct: 45 DPYIKMTILP---EKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101
Query: 125 LKKKQLIG 132
+ +IG
Sbjct: 102 FSRDDIIG 109
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 68 YVKLMLLSSSGQEMSRAKTSVRRGQP 93
Y M L SGQ++S+A+ ++RG P
Sbjct: 127 YFPSMYLQKSGQDVSQAQRQIKRGAP 152
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 68 YVKLMLLSSSGQEMSRAKTSVRRGQP 93
Y M L SGQ++S+A+ ++RG P
Sbjct: 127 YFPSMYLQKSGQDVSQAQRQIKRGAP 152
>pdb|1TTV|A Chain A, Nmr Structure Of A Complex Between Mdm2 And A Small
Molecule Inhibitor
Length = 107
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 92 QPNPLF----------KETFVFQVALFHLSDVTLVVSVYDRK 123
QP PL KETF + L+HL + +YD K
Sbjct: 13 QPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEK 54
>pdb|4IPF|A Chain A, The 1.7a Crystal Structure Of Humanized Xenopus Mdm2 With
Ro5045337
Length = 85
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 92 QPNPLF----------KETFVFQVALFHLSDVTLVVSVYDRKS 124
QP PL KETF + L+HL + +YD K
Sbjct: 5 QPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQ 47
>pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|3TJ4|B Chain B, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|4H19|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|C Chain C, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|D Chain D, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|E Chain E, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|F Chain F, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|G Chain G, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|H Chain H, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|I Chain I, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|K Chain K, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|L Chain L, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|M Chain M, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|N Chain N, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|P Chain P, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|J Chain J, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|O Chain O, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
Length = 372
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 11 LSLGRSDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFR----NVAMTRAPD 66
L L +DSTHS+ H GV + S +G G F G+H + + D
Sbjct: 13 LPLTSESISDSTHSITHWGVVGAKITTS-DGIEGYGF----TGTHAHLPSDRLITSCISD 67
Query: 67 TYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLK 126
Y L LL + SR T + R P + +V + + HL+ + V+++D K+ K
Sbjct: 68 CYAPL-LLGEDASDHSRLWTKLAR---YPSLQ--WVGRAGITHLALAAVDVALWDIKA-K 120
Query: 127 KKQLIGWFSLGQNSTSEEE 145
K + W LG T+ E
Sbjct: 121 KAGVPLWHYLGGARTAGVE 139
>pdb|1YCQ|A Chain A, Xenopus Laevis Mdm2 Bound To The Transactivation Domain Of
Human P53
Length = 107
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 92 QPNPLF----------KETFVFQVALFHLSDVTLVVSVYDRK 123
QP PL KETF + ++HL + +YD K
Sbjct: 13 QPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEK 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,708,787
Number of Sequences: 62578
Number of extensions: 167639
Number of successful extensions: 360
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 40
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)