Query psy6698
Match_columns 170
No_of_seqs 110 out of 1063
Neff 9.7
Searched_HMMs 46136
Date Sat Aug 17 00:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08407 C2B_Synaptotagmin-13 C 100.0 6.3E-35 1.4E-39 197.8 15.0 135 30-166 1-137 (138)
2 cd08406 C2B_Synaptotagmin-12 C 100.0 4.2E-34 9.2E-39 193.8 16.1 136 30-167 1-136 (136)
3 cd08692 C2B_Tac2-N C2 domain s 100.0 1E-33 2.2E-38 189.8 16.8 134 31-166 1-135 (135)
4 cd08408 C2B_Synaptotagmin-14_1 100.0 1.2E-33 2.6E-38 192.3 16.0 137 31-167 2-138 (138)
5 cd08409 C2B_Synaptotagmin-15 C 100.0 7.3E-32 1.6E-36 183.6 16.0 135 30-167 1-137 (137)
6 cd08402 C2B_Synaptotagmin-1 C2 100.0 4.8E-31 1E-35 179.5 16.3 135 30-166 1-135 (136)
7 cd08410 C2B_Synaptotagmin-17 C 100.0 6.2E-31 1.3E-35 178.7 15.3 135 31-166 1-135 (135)
8 cd08404 C2B_Synaptotagmin-4 C2 100.0 1.6E-30 3.5E-35 176.9 15.6 136 30-167 1-136 (136)
9 cd08405 C2B_Synaptotagmin-7 C2 100.0 2E-30 4.2E-35 176.5 15.3 136 30-167 1-136 (136)
10 cd08403 C2B_Synaptotagmin-3-5- 100.0 4.6E-30 1E-34 174.3 15.8 134 31-166 1-134 (134)
11 cd08384 C2B_Rabphilin_Doc2 C2 100.0 3.4E-30 7.3E-35 174.7 14.6 133 32-166 1-133 (133)
12 cd00276 C2B_Synaptotagmin C2 d 100.0 4.3E-29 9.2E-34 169.4 16.2 134 31-166 1-134 (134)
13 cd08677 C2A_Synaptotagmin-13 C 100.0 2E-29 4.4E-34 165.3 12.1 116 31-152 1-118 (118)
14 cd08680 C2_Kibra C2 domain fou 100.0 3.2E-27 6.9E-32 157.6 12.9 120 32-151 2-123 (124)
15 cd08392 C2A_SLP-3 C2 domain fi 100.0 5.9E-27 1.3E-31 157.4 13.8 113 30-143 1-114 (128)
16 cd08393 C2A_SLP-1_2 C2 domain 99.9 1.1E-26 2.4E-31 155.8 13.0 113 30-143 1-114 (125)
17 KOG1028|consensus 99.9 1.9E-26 4E-31 181.9 16.3 137 31-169 285-421 (421)
18 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 4E-26 8.8E-31 159.2 15.8 137 30-167 1-162 (162)
19 cd04029 C2A_SLP-4_5 C2 domain 99.9 3E-26 6.5E-31 153.6 13.9 113 30-143 1-114 (125)
20 cd04028 C2B_RIM1alpha C2 domai 99.9 8.3E-26 1.8E-30 154.3 14.9 126 23-154 10-138 (146)
21 cd08381 C2B_PI3K_class_II C2 d 99.9 6E-26 1.3E-30 151.6 13.5 109 31-143 2-111 (122)
22 cd04030 C2C_KIAA1228 C2 domain 99.9 1.5E-24 3.3E-29 145.8 14.4 114 29-143 1-116 (127)
23 cd08389 C2A_Synaptotagmin-14_1 99.9 7.1E-25 1.5E-29 146.8 12.6 110 30-143 2-112 (124)
24 cd08387 C2A_Synaptotagmin-8 C2 99.9 1.4E-24 2.9E-29 145.5 13.4 111 30-143 2-112 (124)
25 cd08385 C2A_Synaptotagmin-1-5- 99.9 1.8E-24 3.9E-29 144.9 13.7 121 29-152 1-122 (124)
26 cd08521 C2A_SLP C2 domain firs 99.9 1.6E-24 3.5E-29 144.8 13.1 112 31-143 1-113 (123)
27 cd08388 C2A_Synaptotagmin-4-11 99.9 3.7E-24 8.1E-29 144.0 14.8 112 29-143 1-114 (128)
28 cd04031 C2A_RIM1alpha C2 domai 99.9 1.4E-24 3.1E-29 145.5 10.5 122 30-152 2-124 (125)
29 cd08685 C2_RGS-like C2 domain 99.9 6.5E-24 1.4E-28 141.1 12.6 116 31-151 1-118 (119)
30 cd08390 C2A_Synaptotagmin-15-1 99.9 4E-23 8.6E-28 138.1 13.7 110 31-143 1-111 (123)
31 cd08386 C2A_Synaptotagmin-7 C2 99.9 2.8E-23 6.1E-28 139.3 12.9 112 29-143 1-113 (125)
32 KOG0696|consensus 99.9 1.3E-23 2.8E-28 161.4 8.8 130 23-156 161-290 (683)
33 cd08395 C2C_Munc13 C2 domain t 99.9 9.2E-22 2E-26 130.4 12.4 111 45-169 1-113 (120)
34 cd04009 C2B_Munc13-like C2 dom 99.9 3.9E-21 8.4E-26 130.2 13.3 114 29-142 1-117 (133)
35 cd04035 C2A_Rabphilin_Doc2 C2 99.9 4.6E-21 1E-25 128.2 11.5 112 30-143 1-113 (123)
36 KOG1028|consensus 99.9 1.6E-21 3.4E-26 154.1 10.3 126 27-155 150-276 (421)
37 cd04026 C2_PKC_alpha_gamma C2 99.9 8.7E-21 1.9E-25 128.2 10.2 123 30-156 1-123 (131)
38 cd04010 C2B_RasA3 C2 domain se 99.8 1.5E-20 3.3E-25 129.0 9.9 111 45-158 1-126 (148)
39 cd08682 C2_Rab11-FIP_classI C2 99.8 5.2E-20 1.1E-24 123.6 9.9 104 46-155 1-110 (126)
40 cd08688 C2_KIAA0528-like C2 do 99.8 4.7E-19 1E-23 116.2 9.0 92 46-143 1-94 (110)
41 cd04016 C2_Tollip C2 domain pr 99.8 1.9E-18 4.1E-23 114.8 11.6 104 44-157 2-108 (121)
42 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.7E-18 3.6E-23 115.8 11.1 101 45-154 1-111 (126)
43 cd04022 C2A_MCTP_PRT_plant C2 99.8 9.5E-19 2E-23 117.6 10.0 105 45-155 1-109 (127)
44 cd04041 C2A_fungal C2 domain f 99.8 8.3E-19 1.8E-23 115.2 9.3 96 44-142 1-98 (111)
45 cd08376 C2B_MCTP_PRT C2 domain 99.8 5.3E-18 1.2E-22 112.2 11.8 103 45-155 1-104 (116)
46 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.7E-18 1E-22 113.3 10.9 102 45-154 1-103 (121)
47 cd04039 C2_PSD C2 domain prese 99.8 7E-18 1.5E-22 110.2 10.2 92 44-142 1-96 (108)
48 cd04019 C2C_MCTP_PRT_plant C2 99.8 7.2E-18 1.6E-22 116.2 10.7 104 45-156 1-110 (150)
49 cd04036 C2_cPLA2 C2 domain pre 99.8 1.1E-17 2.4E-22 111.2 11.1 103 46-154 2-105 (119)
50 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1E-17 2.2E-22 111.9 10.4 104 45-156 1-105 (123)
51 cd08675 C2B_RasGAP C2 domain s 99.8 1.4E-17 3E-22 113.3 11.0 107 46-155 1-121 (137)
52 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.8E-18 2.1E-22 113.5 10.2 106 46-154 2-115 (133)
53 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.8E-17 3.9E-22 110.4 10.5 101 46-154 2-104 (121)
54 KOG1030|consensus 99.7 1.2E-17 2.6E-22 114.1 9.6 98 43-150 5-102 (168)
55 cd08375 C2_Intersectin C2 doma 99.7 2.9E-17 6.2E-22 111.5 10.9 94 42-143 13-106 (136)
56 cd04045 C2C_Tricalbin-like C2 99.7 1E-17 2.2E-22 111.5 8.4 116 44-167 1-116 (120)
57 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.2E-17 2.5E-22 111.0 8.4 102 44-155 1-102 (119)
58 cd04037 C2E_Ferlin C2 domain f 99.7 7.4E-17 1.6E-21 107.9 12.3 116 45-168 1-120 (124)
59 cd04050 C2B_Synaptotagmin-like 99.7 3E-17 6.5E-22 106.7 10.0 86 46-142 2-87 (105)
60 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.8E-17 8.2E-22 108.9 10.4 101 46-154 2-104 (121)
61 cd08681 C2_fungal_Inn1p-like C 99.7 3.2E-17 7E-22 108.7 9.9 103 44-155 1-105 (118)
62 cd04018 C2C_Ferlin C2 domain t 99.7 7.4E-18 1.6E-22 116.0 6.9 107 45-158 1-129 (151)
63 cd04027 C2B_Munc13 C2 domain s 99.7 2E-17 4.4E-22 111.1 8.2 104 45-158 2-116 (127)
64 cd08678 C2_C21orf25-like C2 do 99.7 8.3E-17 1.8E-21 108.0 10.8 101 46-155 1-102 (126)
65 cd08676 C2A_Munc13-like C2 dom 99.7 1.4E-17 2.9E-22 114.8 7.1 108 39-152 23-153 (153)
66 cd04011 C2B_Ferlin C2 domain s 99.7 5.1E-17 1.1E-21 106.7 9.5 105 43-167 3-109 (111)
67 cd04038 C2_ArfGAP C2 domain pr 99.7 8.9E-17 1.9E-21 110.1 10.9 112 44-166 2-113 (145)
68 cd08690 C2_Freud-1 C2 domain f 99.7 1.4E-16 3.1E-21 109.7 11.9 108 46-154 4-121 (155)
69 cd04017 C2D_Ferlin C2 domain f 99.7 1.6E-16 3.5E-21 107.8 11.3 87 45-137 2-95 (135)
70 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.5E-17 7.6E-22 109.8 7.9 102 44-156 4-106 (126)
71 cd04024 C2A_Synaptotagmin-like 99.7 1.1E-16 2.3E-21 107.6 10.2 104 44-155 1-110 (128)
72 cd08378 C2B_MCTP_PRT_plant C2 99.7 3.1E-17 6.6E-22 109.3 7.3 99 46-157 2-106 (121)
73 cd04043 C2_Munc13_fungal C2 do 99.7 4E-16 8.7E-21 104.6 12.0 105 45-154 2-110 (126)
74 cd04015 C2_plant_PLD C2 domain 99.7 5.1E-17 1.1E-21 113.0 7.8 110 43-161 6-146 (158)
75 cd04032 C2_Perforin C2 domain 99.7 2.7E-16 5.8E-21 105.3 11.0 93 42-142 26-118 (127)
76 cd08391 C2A_C2C_Synaptotagmin_ 99.7 5.7E-17 1.2E-21 107.8 7.6 103 44-155 1-110 (121)
77 cd08394 C2A_Munc13 C2 domain f 99.7 4.4E-16 9.5E-21 103.3 10.2 97 44-154 2-101 (127)
78 cd04049 C2_putative_Elicitor-r 99.7 6.1E-16 1.3E-20 103.4 10.4 106 44-155 1-109 (124)
79 cd08382 C2_Smurf-like C2 domai 99.7 7.6E-16 1.7E-20 102.9 10.4 102 45-155 1-106 (123)
80 cd04046 C2_Calpain C2 domain p 99.7 3.1E-16 6.8E-21 105.2 8.4 99 44-153 3-101 (126)
81 cd04040 C2D_Tricalbin-like C2 99.7 1E-15 2.2E-20 101.0 10.3 101 46-153 1-102 (115)
82 cd08686 C2_ABR C2 domain in th 99.7 1E-15 2.2E-20 100.3 9.9 85 46-140 1-92 (118)
83 cd04048 C2A_Copine C2 domain f 99.7 1.3E-15 2.9E-20 101.3 10.5 93 49-143 5-102 (120)
84 cd08383 C2A_RasGAP C2 domain ( 99.7 7.6E-16 1.7E-20 101.8 9.0 101 46-156 2-102 (117)
85 cd08691 C2_NEDL1-like C2 domai 99.7 3.6E-15 7.9E-20 101.1 12.1 105 45-155 2-122 (137)
86 cd04014 C2_PKC_epsilon C2 doma 99.6 2.2E-15 4.8E-20 101.8 10.5 103 43-154 3-118 (132)
87 cd04051 C2_SRC2_like C2 domain 99.6 2.7E-16 5.8E-21 105.3 5.2 109 45-158 1-118 (125)
88 cd08373 C2A_Ferlin C2 domain f 99.6 5E-15 1.1E-19 99.5 10.5 101 50-158 2-103 (127)
89 cd04044 C2A_Tricalbin-like C2 99.6 6.1E-15 1.3E-19 98.4 10.5 93 44-143 2-95 (124)
90 KOG1013|consensus 99.6 7.2E-16 1.6E-20 115.0 6.1 140 27-168 216-355 (362)
91 cd04047 C2B_Copine C2 domain s 99.6 7.1E-15 1.5E-19 96.2 10.0 94 47-142 3-99 (110)
92 cd08374 C2F_Ferlin C2 domain s 99.6 1.5E-14 3.2E-19 97.2 10.3 96 45-143 1-123 (133)
93 PF00168 C2: C2 domain; Inter 99.6 2.4E-14 5.1E-19 88.9 10.3 85 46-135 1-85 (85)
94 cd00275 C2_PLC_like C2 domain 99.6 5.1E-14 1.1E-18 94.4 11.2 106 44-154 2-110 (128)
95 cd04013 C2_SynGAP_like C2 doma 99.6 4.6E-15 1E-19 101.2 6.0 103 44-159 11-118 (146)
96 cd04021 C2_E3_ubiquitin_ligase 99.6 5.6E-14 1.2E-18 94.1 10.8 89 44-142 2-90 (125)
97 KOG1011|consensus 99.6 1.1E-14 2.5E-19 117.1 8.2 156 1-170 1078-1239(1283)
98 KOG0905|consensus 99.5 3.2E-14 7E-19 120.2 7.1 122 29-153 1511-1634(1639)
99 PLN03008 Phospholipase D delta 99.4 4.8E-13 1E-17 111.4 9.4 91 63-162 75-166 (868)
100 KOG1011|consensus 99.4 1.2E-13 2.7E-18 111.3 5.6 106 44-159 295-411 (1283)
101 cd04052 C2B_Tricalbin-like C2 99.4 4.7E-13 1E-17 87.8 5.4 88 62-157 10-99 (111)
102 cd08684 C2A_Tac2-N C2 domain f 99.4 1.8E-12 4E-17 79.3 5.8 101 47-152 2-103 (103)
103 smart00239 C2 Protein kinase C 99.4 1.2E-11 2.6E-16 78.6 9.9 93 46-143 2-94 (101)
104 KOG1328|consensus 99.4 5.6E-13 1.2E-17 108.4 4.3 116 25-141 928-1047(1103)
105 PLN03200 cellulose synthase-in 99.3 2.4E-12 5.2E-17 115.8 7.9 104 42-154 1978-2082(2102)
106 cd00030 C2 C2 domain. The C2 d 99.3 2E-11 4.3E-16 77.2 9.4 90 46-142 1-90 (102)
107 PLN02223 phosphoinositide phos 99.3 4.7E-11 1E-15 95.9 10.2 110 44-158 409-523 (537)
108 KOG2059|consensus 99.2 9.7E-12 2.1E-16 100.9 4.4 109 43-160 4-114 (800)
109 COG5038 Ca2+-dependent lipid-b 99.2 9.1E-11 2E-15 99.9 8.6 114 31-151 1015-1140(1227)
110 PLN02952 phosphoinositide phos 99.2 2.2E-10 4.8E-15 93.7 9.7 112 43-159 469-586 (599)
111 PLN02230 phosphoinositide phos 99.2 2.8E-10 6.1E-15 92.9 10.1 101 43-147 468-574 (598)
112 PLN02222 phosphoinositide phos 99.1 1.3E-09 2.7E-14 89.0 10.7 100 44-147 452-557 (581)
113 KOG0169|consensus 99.0 6.3E-10 1.4E-14 91.5 7.3 100 45-148 617-721 (746)
114 PLN02228 Phosphoinositide phos 99.0 2.9E-09 6.3E-14 86.7 10.0 100 44-147 431-537 (567)
115 KOG1328|consensus 98.9 2.2E-10 4.7E-15 93.7 0.1 114 46-161 116-290 (1103)
116 cd08689 C2_fungal_Pkc1p C2 dom 98.9 7.2E-09 1.6E-13 66.2 6.9 85 46-143 1-88 (109)
117 KOG1013|consensus 98.9 1.6E-10 3.4E-15 86.7 -1.1 119 24-143 73-192 (362)
118 PLN02270 phospholipase D alpha 98.9 3.3E-09 7.1E-14 88.8 6.3 113 42-163 6-138 (808)
119 KOG2060|consensus 98.8 2.1E-09 4.6E-14 82.0 2.8 118 29-152 256-377 (405)
120 COG5038 Ca2+-dependent lipid-b 98.8 1.8E-08 3.9E-13 86.4 8.4 93 42-142 434-528 (1227)
121 KOG1264|consensus 98.7 8.7E-08 1.9E-12 79.7 9.8 95 44-141 1065-1160(1267)
122 KOG2059|consensus 98.7 9E-09 2E-13 84.1 3.9 128 29-159 114-258 (800)
123 KOG1031|consensus 98.7 4.8E-08 1E-12 78.8 7.5 115 43-166 2-118 (1169)
124 KOG1326|consensus 98.5 5.9E-08 1.3E-12 82.0 3.3 91 44-140 613-703 (1105)
125 cd08683 C2_C2cd3 C2 domain fou 98.2 2.7E-06 5.9E-11 56.3 5.1 85 65-151 33-142 (143)
126 KOG1327|consensus 98.1 1.6E-05 3.5E-10 64.2 8.5 115 26-141 118-234 (529)
127 PLN02352 phospholipase D epsil 98.0 7.6E-06 1.7E-10 68.8 4.7 105 43-162 9-120 (758)
128 PLN02964 phosphatidylserine de 97.9 6.4E-05 1.4E-09 62.8 8.1 97 41-151 51-147 (644)
129 KOG1326|consensus 97.5 2E-05 4.4E-10 67.2 -0.2 98 35-138 196-301 (1105)
130 cd08693 C2_PI3K_class_I_beta_d 97.4 0.0028 6E-08 44.7 10.0 96 43-141 7-120 (173)
131 cd08398 C2_PI3K_class_I_alpha 97.4 0.0037 8E-08 43.4 10.1 94 43-141 7-106 (158)
132 cd08380 C2_PI3K_like C2 domain 97.4 0.0022 4.9E-08 44.3 8.8 97 43-141 7-107 (156)
133 cd08397 C2_PI3K_class_III C2 d 97.3 0.0016 3.5E-08 45.3 7.6 78 63-141 28-107 (159)
134 cd04012 C2A_PI3K_class_II C2 d 97.1 0.005 1.1E-07 43.4 8.0 98 43-141 7-119 (171)
135 KOG1265|consensus 97.0 0.0011 2.5E-08 56.5 5.2 91 43-143 702-796 (1189)
136 cd08399 C2_PI3K_class_I_gamma 96.9 0.015 3.2E-07 41.2 8.9 96 43-140 9-121 (178)
137 cd08695 C2_Dock-B C2 domains f 96.8 0.036 7.8E-07 39.6 10.6 59 82-140 53-113 (189)
138 PF14429 DOCK-C2: C2 domain in 96.8 0.069 1.5E-06 38.0 11.8 59 82-140 59-120 (184)
139 PF12416 DUF3668: Cep120 prote 96.7 0.013 2.8E-07 45.7 8.3 87 46-141 2-94 (340)
140 PF00792 PI3K_C2: Phosphoinosi 96.6 0.027 5.8E-07 38.3 8.6 74 67-141 4-85 (142)
141 smart00142 PI3K_C2 Phosphoinos 96.6 0.036 7.8E-07 35.4 8.7 78 45-123 12-91 (100)
142 cd08694 C2_Dock-A C2 domains f 96.6 0.088 1.9E-06 37.8 11.0 59 81-139 52-114 (196)
143 KOG3837|consensus 96.0 0.0015 3.4E-08 51.3 -0.2 112 41-153 364-486 (523)
144 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.14 3E-06 35.4 8.0 102 41-157 6-120 (156)
145 cd08679 C2_DOCK180_related C2 94.8 0.98 2.1E-05 31.9 11.8 58 83-140 53-115 (178)
146 PF10358 NT-C2: N-terminal C2 94.5 0.93 2E-05 30.5 10.6 90 45-141 8-104 (143)
147 cd08697 C2_Dock-D C2 domains f 94.1 1.5 3.2E-05 31.4 11.4 60 81-140 55-123 (185)
148 PF15625 CC2D2AN-C2: CC2D2A N- 93.2 0.72 1.6E-05 32.3 7.3 71 65-142 37-107 (168)
149 cd08696 C2_Dock-C C2 domains f 92.2 0.87 1.9E-05 32.3 6.6 61 81-141 53-119 (179)
150 KOG1452|consensus 84.9 5.2 0.00011 31.1 6.7 80 36-124 43-124 (442)
151 cd08687 C2_PKN-like C2 domain 84.2 5.6 0.00012 25.1 5.5 62 65-139 9-70 (98)
152 KOG0906|consensus 82.8 11 0.00025 32.2 8.3 78 64-141 46-124 (843)
153 KOG1327|consensus 81.1 4.2 9.2E-05 33.7 5.3 62 78-141 37-102 (529)
154 PF10409 PTEN_C2: C2 domain of 70.2 29 0.00062 23.0 8.1 90 44-139 4-95 (134)
155 PF11618 DUF3250: Protein of u 68.3 18 0.00038 23.4 4.8 56 83-140 12-72 (107)
156 KOG0904|consensus 50.2 54 0.0012 29.4 5.8 78 42-121 341-420 (1076)
157 PF07162 B9-C2: Ciliary basal 45.1 1E+02 0.0022 21.4 11.0 46 93-138 55-101 (168)
158 KOG0694|consensus 34.0 37 0.00079 29.3 2.5 53 63-124 26-78 (694)
159 PF14909 SPATA6: Spermatogenes 31.8 1.7E+02 0.0037 20.0 9.4 70 64-140 19-98 (140)
160 COG3822 ABC-type sugar transpo 26.5 33 0.00072 24.7 0.9 54 112-166 116-173 (225)
161 PF14186 Aida_C2: Cytoskeletal 26.4 2.2E+02 0.0048 19.6 7.9 98 42-142 11-113 (147)
162 PF01060 DUF290: Transthyretin 26.1 1.5E+02 0.0033 17.6 3.9 26 114-139 13-38 (80)
163 PTZ00447 apical membrane antig 23.6 3.9E+02 0.0085 21.5 6.8 101 44-159 58-163 (508)
164 KOG1329|consensus 23.2 36 0.00078 30.3 0.7 87 66-160 139-227 (887)
165 PF02120 Flg_hook: Flagellar h 21.5 1.8E+02 0.0038 17.2 3.4 27 24-52 18-44 (85)
No 1
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=100.00 E-value=6.3e-35 Score=197.84 Aligned_cols=135 Identities=26% Similarity=0.445 Sum_probs=125.1
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCC--CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeec
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAM--TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVAL 107 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~--~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~ 107 (170)
.|+|.++++|.+..++|+|.|++|+||+..+. .+.+||||++++.++ +++..+++|++++++.||+|||+|.|.++.
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~-~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ-NAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC-CcccceeccceeeCCCCCccccEEEEECCH
Confidence 48999999999999999999999999999873 345899999999985 556678899999999999999999999999
Q ss_pred CCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 108 FHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 108 ~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
+++.+..|.|.||+++.++++++||++.+++.+.+. +..||.+|+.+|++++++||.|
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~-~~~hW~~ml~~p~~~va~WH~L 137 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGT-ERQHWEEMLDNPRRQIAMWHQL 137 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCc-HHHHHHHHHhCCCCchhEEEEC
Confidence 888888999999999999999999999999998887 8899999999999999999987
No 2
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=100.00 E-value=4.2e-34 Score=193.80 Aligned_cols=136 Identities=34% Similarity=0.558 Sum_probs=126.2
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
.|+|.+++.|.+..++|.|.|++|+||+..+..+.+||||++++.++ ++...+++|++++++.||+|||+|.|.++..+
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~-~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD-GRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC-CccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 49999999999999999999999999999888899999999999985 54556778999999999999999999999888
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccc
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILC 167 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~ 167 (170)
+.+..|.|+||+++.++++++||++.|+..+.+. +..+|++|+..|++++++||.|.
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~-~~~hW~~ml~~~~~~v~~WH~l~ 136 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGM-GLSHWNQMLASLRKPVAMWHPLR 136 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCCh-hHHHHHHHHHCCCCeeeEeeecC
Confidence 8888999999999999999999999999988886 89999999999999999999984
No 3
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=100.00 E-value=1e-33 Score=189.75 Aligned_cols=134 Identities=22% Similarity=0.473 Sum_probs=121.3
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCC-CCeeeeeEEEEeecCC
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQP-NPLFKETFVFQVALFH 109 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~-~p~~~e~~~f~~~~~~ 109 (170)
.+|.++|+|.++.++|+|.|++|+||++....+..||||++++... ++...+++|++++++. +|.|||+|.|+++.++
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~ 79 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-GGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE 79 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-CCcceeecCccEECCCCCceecceEEEeCCchh
Confidence 3799999999999999999999999999876777899999999984 6677889999999996 6999999999998865
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
. +..|.|.|||++..+++++||++.++.++.+.++.+||.+++.+|++++++||.|
T Consensus 80 ~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 80 H-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred h-eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 4 5889999999999999999999999998866558999999999999999999987
No 4
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=100.00 E-value=1.2e-33 Score=192.33 Aligned_cols=137 Identities=66% Similarity=1.118 Sum_probs=127.1
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
|+|.+++.|+...++|.|.|++|+||+..+..+.+||||++++.++.++...+++|++++++.+|+|||+|.|+++.+++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 79999999999999999999999999999888999999999999865555567899999999999999999999998888
Q ss_pred cceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccc
Q psy6698 111 SDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILC 167 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~ 167 (170)
.+..|.|.||+++.++++++||++.+++...+.++..+|++++..|++++++||.|.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l~ 138 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTLL 138 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence 888999999999999999999999999998876578999999999999999999983
No 5
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=100.00 E-value=7.3e-32 Score=183.56 Aligned_cols=135 Identities=30% Similarity=0.556 Sum_probs=122.1
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
+|+|.+++.|++..++|.|.|++|+||+..+ .+.+||||++.+.++ ++...+++|++++++.||.|||+|.|.++.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-NKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-CEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 5999999999999999999999999999888 778999999999884 44445779999999999999999999999888
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCC--CChHHHHHHHHHhhcCCCeeeeccccc
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNS--TSEEELAHWNEMCKVKGEQLARWHILC 167 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~--~~~~~~~~W~~l~~~~~~~~~~w~~l~ 167 (170)
+.+..|.|.||+++..+++++||++.++... .+. +.+||++|+..|++++++||.|+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-~~~hW~~~~~~p~~~i~~WH~l~ 137 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-ELEHWNDMLSKPKELIKRWHALG 137 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-HHHHHHHHHhCCCCceeEEEeCC
Confidence 8878999999999988999999999999753 344 89999999999999999999985
No 6
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.98 E-value=4.8e-31 Score=179.51 Aligned_cols=135 Identities=29% Similarity=0.624 Sum_probs=123.1
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
+|+|.+++.|.+..+.|.|.|++|++|+..+..+.+|||+++++.+. ++....++|++++++.+|.|||+|.|.+...+
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEEC-CcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 59999999999999999999999999999888899999999999763 44455778999999999999999999988766
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
+....|.|+|||++.++++++||++.+++.+.+. +..+|++++..|++++++||.|
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~-~~~~W~~~~~~~~~~~~~wh~~ 135 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA-ELRHWSDMLASPRRPIAQWHTL 135 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh-HHHHHHHHHhCCCCeeeEEEEc
Confidence 6666899999999999999999999999998876 8999999999999999999987
No 7
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.97 E-value=6.2e-31 Score=178.67 Aligned_cols=135 Identities=31% Similarity=0.602 Sum_probs=122.0
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
|+|.+++.|.+..+.|.|.|++|++|+..+..|.+|||+++++.+ +++....++|++++++.+|.|||+|.|.+...++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH-GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEc-CCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence 899999999999999999999999999998889999999999865 2334456899999999999999999999987776
Q ss_pred cceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 111 SDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
.+..|.|.|||++..+++++||++.|+..+.+.++.++|+.|+.+|++++++||.|
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 66689999999999899999999999988777657899999999999999999986
No 8
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.97 E-value=1.6e-30 Score=176.95 Aligned_cols=136 Identities=35% Similarity=0.658 Sum_probs=123.0
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
+|+|.++++|+...+.|.|.|++|++|+..+..|.+||||++++.++ ++.....+|++++++.+|.|+|+|.|.+...+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~-~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG-KKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC-CceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 59999999999999999999999999999988899999999999763 44445788999999999999999999988766
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccc
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILC 167 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~ 167 (170)
+....|.|.|||++.++++++||++.+++.+.+. +..+|++++..|++++.+||.|.
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~-~~~~w~~l~~~~~~~i~~Wh~l~ 136 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGS-GGHHWKEVCNPPRRQIAEWHMLC 136 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCCCc-hHHHHHHHHhCCCCeeeEEEecC
Confidence 6667899999999999999999999999999544 88999999999999999999984
No 9
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.97 E-value=2e-30 Score=176.52 Aligned_cols=136 Identities=35% Similarity=0.654 Sum_probs=122.4
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
+|+|.++++|++..++|.|+|++|++|+..+..+.+|||+++++.+. +......+|++++++.+|.|||+|.|.+..+.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYK-DKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeC-CCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 59999999999999999999999999999888889999999999763 33345679999999999999999999987666
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccc
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILC 167 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~ 167 (170)
+.+..|.|.|||++.++++++||++.+++.+.+. +..+|++|+..|++++++||.|.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-~~~~w~~~~~~~~~~~~~wh~l~ 136 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-ELKHWKDMLSKPRQPVAQWHRLK 136 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-hHHHHHHHHhCCCCchhEEEecC
Confidence 5557899999999999999999999999998866 88999999999999999999874
No 10
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.97 E-value=4.6e-30 Score=174.27 Aligned_cols=134 Identities=33% Similarity=0.634 Sum_probs=121.7
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
|+|.+++.|.+..+.|+|+|++|++|+..+..+.+|||+++++.++ +.....++|++++++.+|.|+|+|.|.+....+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCE-GRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeC-CcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 8999999999999999999999999999988899999999999763 444567899999999999999999999877666
Q ss_pred cceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 111 SDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
....|.|.|||++..+++++||++.+++.+.+. +..+|++++.+|++++++||.|
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~-~~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQ-GREHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCCCCc-hHHHHHHHHHCCCCeeeEeecC
Confidence 656799999999999999999999999997775 8899999999999999999986
No 11
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.97 E-value=3.4e-30 Score=174.72 Aligned_cols=133 Identities=29% Similarity=0.522 Sum_probs=120.3
Q ss_pred EEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCcc
Q psy6698 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLS 111 (170)
Q Consensus 32 ~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~ 111 (170)
+|.+++.|....+.|.|+|++|++|+..+..+.+||||++++.++ +......+|++++++.+|.|||+|.|.+...++.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD-AGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC-CCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence 488999999999999999999999999988889999999999874 3344578999999999999999999998876666
Q ss_pred ceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 112 DVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 112 ~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
...|.|.|||++..+++++||++.+++++.+. ...+|++++..|++++++||.|
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~-~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAKGE-RLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCCCc-hHHHHHHHHhCCCCChheeecC
Confidence 67899999999988899999999999998766 7899999999999999999986
No 12
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.97 E-value=4.3e-29 Score=169.38 Aligned_cols=134 Identities=41% Similarity=0.693 Sum_probs=120.8
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
|+|+++++|++..++|.|+|++|++|+..+..+.+|||+++++.++ +.....++|+++.++.+|.|||+|.|.+....+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG-GKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC-CeEeeeecCcceecCCCCeeeeeEEEECCHHHh
Confidence 8999999999999999999999999999887888999999999873 334457799999999999999999999887665
Q ss_pred cceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 111 SDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
....|.|.||+++..+++++||++.+++++.+. +.++|++|+..|++++++||.|
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~-~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGE-ELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCCCCc-HHHHHHHHHhCCCCceEEeeeC
Confidence 557899999999988889999999999999444 8999999999999999999986
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.97 E-value=2e-29 Score=165.26 Aligned_cols=116 Identities=16% Similarity=0.274 Sum_probs=103.8
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
|+|+++++|++..++|+|+|++|++|+ ..|.+||||++++.++ ++ ..+++|+++++|.||+|||+|.|.++.+++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~-~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVS-EG-QKEAQTALKKLALHTQWEEELVFPLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCC-cC-ccEEEcceecCCCCCccccEEEEeCCHHHh
Confidence 689999999999999999999999998 2356899999999874 32 357799999999999999999999999999
Q ss_pred cceEEEEEEEeCCCCCCcceeEEEEEcCCCC--ChHHHHHHHHH
Q psy6698 111 SDVTLVVSVYDRKSLKKKQLIGWFSLGQNST--SEEELAHWNEM 152 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~--~~~~~~~W~~l 152 (170)
.+..|.|+|||+|+++++++||++.+++.+. +. +..+|.+|
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~-~~~~W~~~ 118 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMML-GAAQWVDL 118 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCc-cccchhcC
Confidence 9999999999999999999999999999964 55 77889764
No 14
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.95 E-value=3.2e-27 Score=157.64 Aligned_cols=120 Identities=20% Similarity=0.336 Sum_probs=105.6
Q ss_pred EEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCcc
Q psy6698 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLS 111 (170)
Q Consensus 32 ~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~ 111 (170)
+|++++.|++..+.|.|.|++|+||+..+..+.+||||++++.|+.++...+++|++++++.+|+|||+|.|+++.+++.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 79999999999999999999999999988788899999999999644323578999999999999999999999999999
Q ss_pred ceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh--HHHHHHHH
Q psy6698 112 DVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE--EELAHWNE 151 (170)
Q Consensus 112 ~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~--~~~~~W~~ 151 (170)
+..|.|+||+++..+++++||++.|++.+... .....||+
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 89999999999999999999999999987643 13444554
No 15
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.95 E-value=5.9e-27 Score=157.44 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=102.2
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCC-CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMT-RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF 108 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~-~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~ 108 (170)
.|+|++++.|+...+.|.|.|++|+||+..+.. |.+||||++++.|+.+ ...+++|++++++.+|+|||+|.|.+...
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~-~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKS-HNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCc-ccceeecccccCCCCCccceEEEEEcCHH
Confidence 489999999999999999999999999998864 8899999999998643 34577999999999999999999999887
Q ss_pred CccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 109 HLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
++.+..|.+.||+++.++++++||++.|++.+...
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence 77778999999999998999999999999987654
No 16
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.95 E-value=1.1e-26 Score=155.78 Aligned_cols=113 Identities=26% Similarity=0.394 Sum_probs=101.8
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCC-CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMT-RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF 108 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~-~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~ 108 (170)
+|+|++++.|....+.|.|.|++|+||+..+.. |.+||||++++.++.. ...+++|++++++.+|.|||+|.|.+...
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~-~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKS-NRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCC-ccccccCccCcCCCCCccCceEEEECCHH
Confidence 599999999999999999999999999998875 7899999999988532 34567999999999999999999999877
Q ss_pred CccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 109 HLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
++....|.|.|||++.++++++||++.++|.....
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~ 114 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDW 114 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCcccc
Confidence 77778999999999999999999999999998754
No 17
>KOG1028|consensus
Probab=99.95 E-value=1.9e-26 Score=181.94 Aligned_cols=137 Identities=40% Similarity=0.685 Sum_probs=129.3
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
|+|.++|+|.++.++|+|.|++|++|...+..+..||||++++..+ ++...+++|.+.+++.||+|||+|.|.++.+.+
T Consensus 285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~-~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l 363 (421)
T KOG1028|consen 285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDG-DKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQL 363 (421)
T ss_pred ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecC-CceeeeeeeecccCCCCCcccccEEEeCCHHHh
Confidence 8999999999999999999999999999999999999999999985 477889999999999999999999999999999
Q ss_pred cceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccccC
Q psy6698 111 SDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILCGD 169 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~~~ 169 (170)
.+..+.|.||+++.++++++||++.++....+. +..+|.+++..|++++++||.|..+
T Consensus 364 ~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~~~~-~~~hW~~m~~~p~~pv~~wh~l~~~ 421 (421)
T KOG1028|consen 364 AEVSLELTVWDHDTLGSNDLIGRCILGSDSTGE-EVRHWQEMLNSPRKPVAQWHSLRSS 421 (421)
T ss_pred heeEEEEEEEEcccccccceeeEEEecCCCCch-HHHHHHHHHhCccCceeeeEecccC
Confidence 888999999999999999999999999888555 8999999999999999999999753
No 18
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.95 E-value=4e-26 Score=159.21 Aligned_cols=137 Identities=26% Similarity=0.393 Sum_probs=118.6
Q ss_pred ccEEEEEEEEeC------------CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCee
Q psy6698 30 VAELLLGLSYNG------------TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLF 97 (170)
Q Consensus 30 ~G~l~~~l~~~~------------~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~ 97 (170)
+|+|.+++.|.+ ..++|.|.|++|+||+..+..+.+||||++++.++ +.....++|++++++.||.|
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-~~~~~~~kT~vi~~t~nP~W 79 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-KSKKSKQKTPVVKKSVNPVW 79 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-CCCCcceeCCccCCCCCCCC
Confidence 599999999998 45899999999999999988899999999999763 33446789999999999999
Q ss_pred eeeEEEEe-ecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCC------------ChHHHHHHHHHhhcCCCeeeecc
Q psy6698 98 KETFVFQV-ALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNST------------SEEELAHWNEMCKVKGEQLARWH 164 (170)
Q Consensus 98 ~e~~~f~~-~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~------------~~~~~~~W~~l~~~~~~~~~~w~ 164 (170)
||+|.|.+ ...++.+..|.|.|||++.++++++||++.+++..+ ...+..+|+.|+.+|.+++..-.
T Consensus 80 nE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~ 159 (162)
T cd04020 80 NHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTL 159 (162)
T ss_pred CCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEE
Confidence 99999984 455555568999999999989999999999999864 33588999999999999998887
Q ss_pred ccc
Q psy6698 165 ILC 167 (170)
Q Consensus 165 ~l~ 167 (170)
||+
T Consensus 160 ~~~ 162 (162)
T cd04020 160 PLR 162 (162)
T ss_pred ecC
Confidence 763
No 19
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.94 E-value=3e-26 Score=153.63 Aligned_cols=113 Identities=25% Similarity=0.390 Sum_probs=101.1
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCC-CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAM-TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF 108 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~-~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~ 108 (170)
.|+|++++.|+...+.|.|.|++|+||+..+. .+.+||||++++.++ +....+++|++++++.+|.|||+|.|.+...
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD-KSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC-CccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 49999999999999999999999999998765 478999999999874 3344577999999999999999999999877
Q ss_pred CccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 109 HLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
++.+..|.|.|||++..+++++||++.+++.++..
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~ 114 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNF 114 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccc
Confidence 77777899999999999999999999999998765
No 20
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.94 E-value=8.3e-26 Score=154.33 Aligned_cols=126 Identities=24% Similarity=0.413 Sum_probs=105.0
Q ss_pred CcCCCCCccEEEEEEEEeCCCCeEEEEEEEeecCCCCC-CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeE
Q psy6698 23 HSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVA-MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETF 101 (170)
Q Consensus 23 ~~~~~~~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~-~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~ 101 (170)
..+.....|+|++++.| ..+.|.|.|++|+||+..+ ..+.+||||++++.++ ++...+++|++++++.||+|||+|
T Consensus 10 ~~~~~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~-~~~~~k~KT~v~kktlnPvfNE~F 86 (146)
T cd04028 10 QVLASPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEG-KKCIAKKKTKIARKTLDPLYQQQL 86 (146)
T ss_pred ccccCCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECC-CccccceeceecCCCCCCccCCeE
Confidence 45566789999999999 5789999999999998864 4678999999999985 444568899999999999999999
Q ss_pred EEEeecCCccceEEEEEEE-eCCCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhh
Q psy6698 102 VFQVALFHLSDVTLVVSVY-DRKSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCK 154 (170)
Q Consensus 102 ~f~~~~~~l~~~~l~i~v~-~~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~ 154 (170)
.|.+. +.+..|.|+|| +++.++++++||++.|+|+.+.. .....||+|++
T Consensus 87 ~f~v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 87 VFDVS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred EEEEc---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 99987 34579999999 57888899999999999998754 14445666544
No 21
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.94 E-value=6e-26 Score=151.56 Aligned_cols=109 Identities=28% Similarity=0.472 Sum_probs=97.8
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEe-ecCC
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQV-ALFH 109 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~-~~~~ 109 (170)
|+|.+++.|+ .+.|.|.|++|++|+..+ .+.+||||++++.++ .....+++|++++++.||.|||+|.|.+ +..+
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~-~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPD-PQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeC-CccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 8999999998 799999999999999998 889999999999885 3344678999999999999999999997 6566
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
+....|.|.|||++.++++++||++.+++.++..
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~ 111 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDL 111 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEecccccc
Confidence 6667999999999999999999999999998764
No 22
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.93 E-value=1.5e-24 Score=145.78 Aligned_cols=114 Identities=31% Similarity=0.489 Sum_probs=101.4
Q ss_pred CccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC
Q psy6698 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF 108 (170)
Q Consensus 29 ~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~ 108 (170)
..|+|++++.|+...+.|+|.|++|+||+..+..+.+|||+++++.++ +.....++|++++++.+|.|||+|.|.+...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~ 79 (127)
T cd04030 1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD-KSKSTRRKTSVKKDNLNPVFDETFEFPVSLE 79 (127)
T ss_pred CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC-CCCCceEecccccCCCCCEECeEEEEecCHH
Confidence 479999999999999999999999999999988889999999999874 3345678999999999999999999998877
Q ss_pred CccceEEEEEEEeCCCC--CCcceeEEEEEcCCCCCh
Q psy6698 109 HLSDVTLVVSVYDRKSL--KKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~--~~~~~iG~~~i~l~~~~~ 143 (170)
++....|.|.||+++.. +++++||++.+++.++..
T Consensus 80 ~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~ 116 (127)
T cd04030 80 ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL 116 (127)
T ss_pred HhcCCEEEEEEEECCcccCCCCceEEEEEEecccccc
Confidence 66667899999998875 688999999999998754
No 23
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.93 E-value=7.1e-25 Score=146.79 Aligned_cols=110 Identities=30% Similarity=0.474 Sum_probs=99.8
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEE-eecC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQ-VALF 108 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~-~~~~ 108 (170)
.|+|++++.|+...++|.|+|++|+||+..+..+..+|||++.+.+.. ..+++|++++. .+|+|||+|.|+ +...
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~---~~~~kTkv~~~-~nP~fnE~F~f~~i~~~ 77 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK---KQRAKTKVQRG-PNPVFNETFTFSRVEPE 77 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC---cceeecccccC-CCCcccCEEEECCCCHH
Confidence 699999999999999999999999999999888889999999988742 25678988888 999999999998 8877
Q ss_pred CccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 109 HLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
++.+..|.|.||+++.++++++||++.|+++.+..
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~ 112 (124)
T cd08389 78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL 112 (124)
T ss_pred HhccCEEEEEEEECCCcccCceEEEEEEeccccCC
Confidence 77788999999999999999999999999998765
No 24
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.93 E-value=1.4e-24 Score=145.51 Aligned_cols=111 Identities=25% Similarity=0.428 Sum_probs=100.3
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
+|+|++++.|++..+.|.|.|++|++|+..+..+.+|||+++++.++ +. ..++|++++++.+|.|+|+|.|.+...+
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~ 78 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-RS--NTKQSKIHKKTLNPEFDESFVFEVPPQE 78 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-CC--CcEeCceEcCCCCCCcccEEEEeCCHHH
Confidence 69999999999999999999999999999888889999999999764 22 4679999999999999999999988776
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
+....|.|.||+++.++++++||++.++++++..
T Consensus 79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~ 112 (124)
T cd08387 79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDL 112 (124)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEEecccccC
Confidence 6667899999999999999999999999998764
No 25
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.93 E-value=1.8e-24 Score=144.89 Aligned_cols=121 Identities=29% Similarity=0.494 Sum_probs=104.8
Q ss_pred CccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC
Q psy6698 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF 108 (170)
Q Consensus 29 ~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~ 108 (170)
.+|+|++++.|+...+.|.|+|++|++|+..+..+.+|||+++++.++ . ...++|++++++.+|.|||+|.|.+...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~-~--~~~~kT~v~~~t~nP~wne~f~f~i~~~ 77 (124)
T cd08385 1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-K--KKKFETKVHRKTLNPVFNETFTFKVPYS 77 (124)
T ss_pred CccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC-C--CCceecccCcCCCCCceeeeEEEeCCHH
Confidence 379999999999999999999999999999888889999999999864 2 2477999999999999999999998776
Q ss_pred CccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh-HHHHHHHHH
Q psy6698 109 HLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE-EELAHWNEM 152 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l 152 (170)
++....|.|.||+++.++++++||++.+++..... ...++|++|
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred HhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 66567899999999998999999999999997643 255666655
No 26
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.92 E-value=1.6e-24 Score=144.85 Aligned_cols=112 Identities=26% Similarity=0.436 Sum_probs=99.5
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCC-CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVA-MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~-~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
|+|++++.|+...+.|.|+|++|+||+..+ ..+.+|||+++++.++ +.....++|++++++.+|.|||+|.|.+...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD-KSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC-CCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence 899999999999999999999999999988 6788999999999874 32334689999999999999999999988776
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
+....|.|.||+++..+++++||++.++++.+..
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL 113 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccc
Confidence 6667899999999998999999999999998753
No 27
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.92 E-value=3.7e-24 Score=144.02 Aligned_cols=112 Identities=25% Similarity=0.417 Sum_probs=98.5
Q ss_pred CccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCC-CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEE-Eee
Q psy6698 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMT-RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVF-QVA 106 (170)
Q Consensus 29 ~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~-~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f-~~~ 106 (170)
.+|+|.+++.|+...++|+|+|++|++|+..+.. +.+||||++.+.++ . ..+.+|++++++.+|.|||+|.| .+.
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~-~--~~~~kT~v~~~t~nP~wnE~F~f~~~~ 77 (128)
T cd08388 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE-K--EHKVKTRVLRKTRNPVYDETFTFYGIP 77 (128)
T ss_pred CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC-c--CceeeccEEcCCCCCceeeEEEEcccC
Confidence 3799999999999999999999999999998775 88999999999764 2 24678999999999999999999 466
Q ss_pred cCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 107 LFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 107 ~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
..++.+..|.+.||+++.++++++||++.+++.++..
T Consensus 78 ~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 78 YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred HHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC
Confidence 6665556899999999999999999999999998754
No 28
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.92 E-value=1.4e-24 Score=145.49 Aligned_cols=122 Identities=20% Similarity=0.353 Sum_probs=102.2
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEe-ecC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQV-ALF 108 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~-~~~ 108 (170)
.|+|.+++.|+...++|.|+|++|++|+..+..+.+|||+++++.++ +.....++|++++++.+|.|||+|.|.+ ...
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD-RSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC-CCccccccccccCCCCCCccccEEEEcccCHH
Confidence 69999999999999999999999999999888889999999999763 3234577899999999999999999984 435
Q ss_pred CccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHH
Q psy6698 109 HLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEM 152 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l 152 (170)
++....|.|.|||++..+++++||++.+++.+....+..+||+|
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L 124 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEEC
Confidence 55557899999999998899999999999997332233455544
No 29
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.92 E-value=6.5e-24 Score=141.06 Aligned_cols=116 Identities=28% Similarity=0.445 Sum_probs=96.5
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
|+|+++++| ..+.|.|.|++|+||+..+ .+.+||||++++.++ .....+++|++++++.+|.|||+|.|.+...++
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~-~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~ 76 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD-KEVRFRQKTSTVPDSANPLFHETFSFDVNERDY 76 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC-CCCcceEeCccccCCCCCccccEEEEEcChHHh
Confidence 789999998 7899999999999999987 788999999999985 334457799999999999999999999877665
Q ss_pred cceEEEEEEEeCCCCC-CcceeEEEEEcCCCCCh-HHHHHHHH
Q psy6698 111 SDVTLVVSVYDRKSLK-KKQLIGWFSLGQNSTSE-EELAHWNE 151 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~-~~~~iG~~~i~l~~~~~-~~~~~W~~ 151 (170)
. ..|.|.||+++... ++++||++.|++.+... .....||.
T Consensus 77 ~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 77 Q-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred C-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 4 46889999998765 47899999999987643 13445553
No 30
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.91 E-value=4e-23 Score=138.14 Aligned_cols=110 Identities=27% Similarity=0.422 Sum_probs=98.2
Q ss_pred cEEEEEEEEeCCCCeEEEEEEEeecCCCCC-CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 31 AELLLGLSYNGTTGRIFIEVIKGSHFRNVA-MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 31 G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~-~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
|+|.+++.|+...+.|.|.|++|++|+..+ ..+.+|||+++++.++ +. ...+|++++++.+|.|||.|.|.+....
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~-~~--~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD-ER--RSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC-CC--CceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 899999999999999999999999999987 5788999999999874 22 3578999999999999999999988766
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
+....|.|.||+++..+++++||++.++++++..
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~ 111 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceec
Confidence 6556899999999988889999999999998765
No 31
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.91 E-value=2.8e-23 Score=139.27 Aligned_cols=112 Identities=23% Similarity=0.395 Sum_probs=97.4
Q ss_pred CccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEe-ec
Q psy6698 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQV-AL 107 (170)
Q Consensus 29 ~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~-~~ 107 (170)
.+|+|++++.|....+.|.|.|++|++|+..+..+.+|||+++++.++.+ ...+|++++++.+|.|||+|.|.. ..
T Consensus 1 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~ 77 (125)
T cd08386 1 NLGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPY 77 (125)
T ss_pred CccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCH
Confidence 36999999999999999999999999999988888899999999976422 467999999999999999999974 34
Q ss_pred CCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 108 FHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 108 ~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
+.+....|.+.||+++..+++++||++.+++.++..
T Consensus 78 ~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 78 EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred HHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC
Confidence 344456899999999998899999999999997764
No 32
>KOG0696|consensus
Probab=99.90 E-value=1.3e-23 Score=161.44 Aligned_cols=130 Identities=18% Similarity=0.316 Sum_probs=116.6
Q ss_pred CcCCCCCccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEE
Q psy6698 23 HSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFV 102 (170)
Q Consensus 23 ~~~~~~~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~ 102 (170)
+..+...+|+|.+.+.. ....|+|.|.+|+||.+++.+|.+||||++.+.|+.+ ...+++|++++.++||+|||+|.
T Consensus 161 G~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~-~~sKqKTkTik~~LNP~wNEtft 237 (683)
T KOG0696|consen 161 GTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPK-NESKQKTKTIKATLNPVWNETFT 237 (683)
T ss_pred CCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCc-chhhhhhhhhhhhcCccccceeE
Confidence 34445678999998876 8899999999999999999999999999999999644 45688999999999999999999
Q ss_pred EEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcC
Q psy6698 103 FQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVK 156 (170)
Q Consensus 103 f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~ 156 (170)
|.+.+.+.. +.|.|.|||+|+.++++|+|...++++++.++..++||+|+..-
T Consensus 238 f~Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 238 FKLKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQE 290 (683)
T ss_pred Eeccccccc-ceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhhh
Confidence 999988854 78999999999999999999999999999888899999998763
No 33
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.88 E-value=9.2e-22 Score=130.40 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=89.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEe-CCCCccceeeecceeCCCCCeeeeeEEEEeecC-CccceEEEEEEEeC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLS-SSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF-HLSDVTLVVSVYDR 122 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~-~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~-~l~~~~l~i~v~~~ 122 (170)
+|+|.|++|++|+..+ .|.+|||+++++.. ..+...++++|+++.++.||+|||+|.|.+..+ .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999876 48899999999852 112234467899999999999999999998864 45557899999999
Q ss_pred CCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccccC
Q psy6698 123 KSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILCGD 169 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~~~ 169 (170)
+..+++++||++.+++.++.. +.....|.+|.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~-------------~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQ-------------AGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcC-------------CCcEEEEEECcCc
Confidence 988889999999999988765 3345667766654
No 34
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.87 E-value=3.9e-21 Score=130.23 Aligned_cols=114 Identities=22% Similarity=0.308 Sum_probs=97.9
Q ss_pred CccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCC-CccceeeecceeCCCCCeeeeeEEEEeec
Q psy6698 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSG-QEMSRAKTSVRRGQPNPLFKETFVFQVAL 107 (170)
Q Consensus 29 ~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~-~~~~~~~t~~~~~t~~p~~~e~~~f~~~~ 107 (170)
.+|+|.+++.|+...+.|+|.|++|++|+..+..+.+|||+++++.+... .....++|++++++.+|.|||+|.|.+..
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 37999999999999999999999999999988888999999999975321 12357899999999999999999999875
Q ss_pred CC--ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCC
Q psy6698 108 FH--LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 108 ~~--l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~ 142 (170)
.+ .....|.|.|||++..+++++||++.++++++.
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 32 234689999999999999999999999998654
No 35
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.86 E-value=4.6e-21 Score=128.16 Aligned_cols=112 Identities=20% Similarity=0.332 Sum_probs=96.9
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEE-eecC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQ-VALF 108 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~-~~~~ 108 (170)
+|+|++++.|+.+.+.|.|.|++|++|+..+..+.+|||+++.+.+. +.....++|++++++.+|.|+|+|.|. +...
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG-ASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC-CCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 59999999999999999999999999998887889999999999763 323457899999999999999999996 4444
Q ss_pred CccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 109 HLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 109 ~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
++.+..+.|.+|+++.. ++++||++.++++++..
T Consensus 80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCC
Confidence 44456899999999987 78999999999998765
No 36
>KOG1028|consensus
Probab=99.86 E-value=1.6e-21 Score=154.12 Aligned_cols=126 Identities=28% Similarity=0.406 Sum_probs=113.2
Q ss_pred CCCccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEee
Q psy6698 27 HGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVA 106 (170)
Q Consensus 27 ~~~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~ 106 (170)
....|+|.+++.|+.....|+|+|++|++|+..+..|.+||||++++.|+ +..+.+|++++++.+|.|||+|.|.+.
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPd---k~~k~kT~v~r~tlnP~fnEtf~f~v~ 226 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPD---KKGKFKTRVHRKTLNPVFNETFRFEVP 226 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCC---CCCcceeeeeecCcCCccccceEeecC
Confidence 45689999999999999999999999999999996678999999999997 346889999999999999999999999
Q ss_pred cCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChH-HHHHHHHHhhc
Q psy6698 107 LFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEE-ELAHWNEMCKV 155 (170)
Q Consensus 107 ~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~~ 155 (170)
..++....|.+.||++|+++++++||++.++++..... ....|.++...
T Consensus 227 ~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~ 276 (421)
T KOG1028|consen 227 YEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS 276 (421)
T ss_pred HHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccc
Confidence 88888899999999999999999999999998866542 35679888775
No 37
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.85 E-value=8.7e-21 Score=128.18 Aligned_cols=123 Identities=21% Similarity=0.390 Sum_probs=102.7
Q ss_pred ccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC
Q psy6698 30 VAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH 109 (170)
Q Consensus 30 ~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~ 109 (170)
+|+|.+++.|.. +.|+|+|++|++|+..+..+.+|||+++.+.+. +.....++|++++++.+|.|+|+|.|.+...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-PKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-CCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 599999999955 999999999999998887888999999999753 32345789999999999999999999977644
Q ss_pred ccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcC
Q psy6698 110 LSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVK 156 (170)
Q Consensus 110 l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~ 156 (170)
. ...|.|.||+++..+++++||++.+++.++.......||+|+...
T Consensus 78 ~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~ 123 (131)
T cd04026 78 K-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQE 123 (131)
T ss_pred c-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCcc
Confidence 2 358999999999888899999999999876543566788876543
No 38
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.84 E-value=1.5e-20 Score=129.02 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=90.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEee-------------cCCcc
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVA-------------LFHLS 111 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~-------------~~~l~ 111 (170)
+|+|.|++|++|+. ..|.+|||+++++.++ ......++|++++++.+|+|||+|.|.+. ..++.
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~-~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYS-NKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCC-cccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999998 4578999999999763 22334678999999999999999999984 23444
Q ss_pred ceEEEEEEEeCCCCCCcceeEEEEEcCCCCChH--HHHHHHHHhhcCCC
Q psy6698 112 DVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEE--ELAHWNEMCKVKGE 158 (170)
Q Consensus 112 ~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~--~~~~W~~l~~~~~~ 158 (170)
...|.|.||+++.+++++|||++.|++..+... ....||.|.+...+
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 568999999999888999999999999987652 46789999765443
No 39
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=5.2e-20 Score=123.58 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=85.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC---CccceEEEEEEEeC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF---HLSDVTLVVSVYDR 122 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~---~l~~~~l~i~v~~~ 122 (170)
+.|+|++|+||+..+..|.+|||+++.+.. .+++|++++++.+|+|||+|.|.+... ++....|.|.||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEc
Confidence 479999999999988888999999999832 367999999999999999999998762 33456899999999
Q ss_pred CCCCCcceeEEEEEcCCCCC--h-HHHHHHHHHhhc
Q psy6698 123 KSLKKKQLIGWFSLGQNSTS--E-EELAHWNEMCKV 155 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~~--~-~~~~~W~~l~~~ 155 (170)
+.++++++||++.+++.++. . .....|+.|...
T Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESK 110 (126)
T ss_pred cccCCCceeEEEEEEHHHhhccCCCcccEEEECcCC
Confidence 98889999999999998654 1 244567777643
No 40
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.80 E-value=4.7e-19 Score=116.23 Aligned_cols=92 Identities=23% Similarity=0.305 Sum_probs=80.2
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCee-eeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 46 IFIEVIKGSHFRNVAM-TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLF-KETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~-~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~-~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
|.|+|++|++|+..+. .+.+|||+++++.. ..++|++++++.+|.| ||+|.|.+...++....|.|.||+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC
Confidence 5799999999998874 67899999999832 5788999999999999 99999998876665568999999999
Q ss_pred CCCCcceeEEEEEcCCCCCh
Q psy6698 124 SLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~ 143 (170)
.++++++||++.+++.++..
T Consensus 75 ~~~~~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 75 TYSANDAIGKVYIDLNPLLL 94 (110)
T ss_pred CCCCCCceEEEEEeHHHhcc
Confidence 99999999999999987643
No 41
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.79 E-value=1.9e-18 Score=114.77 Aligned_cols=104 Identities=18% Similarity=0.351 Sum_probs=85.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeC-CCCCeeeeeEEEEeecCCccceEEEEEEEeC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG-QPNPLFKETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~-t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
|.|.|+|++|++++..+ .|.+|||+++.+.. .+++|++..+ +.||+|||+|.|.+.... ..|.|.|||+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~ 71 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPEGV---DSIYIEIFDE 71 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecCCC---cEEEEEEEeC
Confidence 68999999999987766 78999999999932 3568888875 799999999999986532 4799999999
Q ss_pred CCCCCcceeEEEEEcCC-CCCh-HHHHHHHHHhhcCC
Q psy6698 123 KSLKKKQLIGWFSLGQN-STSE-EELAHWNEMCKVKG 157 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~-~~~~-~~~~~W~~l~~~~~ 157 (170)
+.+++|++||.+.+++. .... +..+.|++|....+
T Consensus 72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~ 108 (121)
T cd04016 72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQG 108 (121)
T ss_pred CCCcCCceEEEEEEECchhccCCCCccccEeCcCccC
Confidence 99999999999999996 3322 35789999976443
No 42
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.7e-18 Score=115.78 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=84.4
Q ss_pred eEEEEEEEeec---CCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEe
Q psy6698 45 RIFIEVIKGSH---FRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYD 121 (170)
Q Consensus 45 ~L~v~i~~a~~---L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~ 121 (170)
.|+|+|++|++ |+..+..|.+|||+.+.+.. .+.+|+++.++.||+|||+|.|.+.... ..|.|.||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~~~nP~WnE~f~f~v~~~~---~~l~v~V~d 71 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVEDSSNPRWNEQYTWPVYDPC---TVLTVGVFD 71 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccCCCCCcceeEEEEEecCCC---CEEEEEEEE
Confidence 37899999999 88888889999999999832 3678999999999999999999986533 489999999
Q ss_pred CCCC------CCcceeEEEEEcCCCCCh-HHHHHHHHHhh
Q psy6698 122 RKSL------KKKQLIGWFSLGQNSTSE-EELAHWNEMCK 154 (170)
Q Consensus 122 ~~~~------~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~ 154 (170)
++.. .++++||++.+++.++.. .....|++|..
T Consensus 72 ~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 72 NSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 9876 389999999999987654 24467888764
No 43
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=9.5e-19 Score=117.61 Aligned_cols=105 Identities=21% Similarity=0.360 Sum_probs=86.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC-CccceEEEEEEEeCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF-HLSDVTLVVSVYDRK 123 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~-~l~~~~l~i~v~~~~ 123 (170)
+|+|+|++|++|+..+..+.+|||+++++.. ..++|+++.++.+|.|||.|.|.+... .+....|.|.||+++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~ 74 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR 74 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC
Confidence 4899999999999988888999999999843 357899999999999999999997642 333458999999998
Q ss_pred CCC-CcceeEEEEEcCCCCCh--HHHHHHHHHhhc
Q psy6698 124 SLK-KKQLIGWFSLGQNSTSE--EELAHWNEMCKV 155 (170)
Q Consensus 124 ~~~-~~~~iG~~~i~l~~~~~--~~~~~W~~l~~~ 155 (170)
... ++++||++.+++.++.. ....+|+.|...
T Consensus 75 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~ 109 (127)
T cd04022 75 RSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR 109 (127)
T ss_pred CCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC
Confidence 876 89999999999987652 245688888653
No 44
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.79 E-value=8.3e-19 Score=115.22 Aligned_cols=96 Identities=16% Similarity=0.293 Sum_probs=82.3
Q ss_pred CeEEEEEEEeecCCCCCCC-CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc-cceEEEEEEEe
Q psy6698 44 GRIFIEVIKGSHFRNVAMT-RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL-SDVTLVVSVYD 121 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~-~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l-~~~~l~i~v~~ 121 (170)
|.|+|+|++|++|+..+.. +.+|||+++++.+. + ...++|++++++.+|.|||+|.|.+...++ ....|.|.|||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKF-G--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccC-C--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 5799999999999998887 89999999998653 3 246799999999999999999998766533 23589999999
Q ss_pred CCCCCCcceeEEEEEcCCCCC
Q psy6698 122 RKSLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~~ 142 (170)
++..+++++||++.+++.++.
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHh
Confidence 999999999999999988664
No 45
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=5.3e-18 Score=112.15 Aligned_cols=103 Identities=20% Similarity=0.259 Sum_probs=85.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
.++|.|++|++|+..+..+.+|||+++++. + ...+|++++++.+|.|||+|.|.+.... ...|.|.|||++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~v~v~d~~~ 72 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---N---EKYKSKVCSKTLNPQWLEQFDLHLFDDQ--SQILEIEVWDKDT 72 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---C---EeEecccccCCCCCceeEEEEEEecCCC--CCEEEEEEEECCC
Confidence 378999999999999888899999999983 2 3678999999999999999999876542 3589999999999
Q ss_pred CCCcceeEEEEEcCCCCCh-HHHHHHHHHhhc
Q psy6698 125 LKKKQLIGWFSLGQNSTSE-EELAHWNEMCKV 155 (170)
Q Consensus 125 ~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~ 155 (170)
.+++++||++.++++++.. +..+.|++|.+.
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (116)
T cd08376 73 GKKDEFIGRCEIDLSALPREQTHSLELELEDG 104 (116)
T ss_pred CCCCCeEEEEEEeHHHCCCCCceEEEEEccCC
Confidence 8899999999999986654 244567666554
No 46
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=4.7e-18 Score=113.26 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=84.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
+|+|+|++|++|+..+..+.+|||+++++. + ...++|+++.++.+|.|||.|.|.+... ...|.|.|||++.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~---~--~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~D~d~ 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG---G--KTVYKSKTIYKNLNPVWDEKFTLPIEDV---TQPLYIKVFDYDR 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC---C--EEEEEeeeccCCCCCccceeEEEEecCC---CCeEEEEEEeCCC
Confidence 489999999999998888899999999873 2 1467899999999999999999987542 2589999999999
Q ss_pred CCCcceeEEEEEcCCCCCh-HHHHHHHHHhh
Q psy6698 125 LKKKQLIGWFSLGQNSTSE-EELAHWNEMCK 154 (170)
Q Consensus 125 ~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~ 154 (170)
.+++++||++.+++.++.. ...+.|+.|..
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (121)
T cd04042 73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLED 103 (121)
T ss_pred CCCCcceEEEEEEHHHcCCCCCeEEEEECCC
Confidence 9899999999999987653 13455666643
No 47
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.76 E-value=7e-18 Score=110.15 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=77.7
Q ss_pred CeEEEEEEEeecCCCCCCC----CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEE
Q psy6698 44 GRIFIEVIKGSHFRNVAMT----RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSV 119 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~----~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v 119 (170)
|.|.|+|++|++|++.+.. +.+|||+++++. + ..++|++++++.+|+|||.|.|.+...+. ...|.|.|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~---~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V 73 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---R---RVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKV 73 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---C---EeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEE
Confidence 5789999999999987532 357999999982 2 36789999999999999999999876543 35899999
Q ss_pred EeCCCCCCcceeEEEEEcCCCCC
Q psy6698 120 YDRKSLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 120 ~~~~~~~~~~~iG~~~i~l~~~~ 142 (170)
||++..+++++||++.++|.++.
T Consensus 74 ~D~d~~~~dd~IG~~~l~L~~l~ 96 (108)
T cd04039 74 LDKDKFSFNDYVATGSLSVQELL 96 (108)
T ss_pred EECCCCCCCcceEEEEEEHHHHH
Confidence 99999999999999999998654
No 48
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=7.2e-18 Score=116.21 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=85.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeC-CCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG-QPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~-t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
.|.|+|++|++|+..+..|.+|||+++.+.. ..++|++..+ +.+|.|||+|.|.+.... ...+.|.||+++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~--~~~l~v~V~d~~ 72 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEPF--EDHLILSVEDRV 72 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCcc--CCeEEEEEEEec
Confidence 3789999999999999889999999999832 4667887766 699999999999875432 248899999999
Q ss_pred CCCCcceeEEEEEcCCCCCh-----HHHHHHHHHhhcC
Q psy6698 124 SLKKKQLIGWFSLGQNSTSE-----EELAHWNEMCKVK 156 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~-----~~~~~W~~l~~~~ 156 (170)
..+++++||++.+++.++.. ...++|++|....
T Consensus 73 ~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 73 GPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred CCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 88889999999999997642 1357888887653
No 49
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.76 E-value=1.1e-17 Score=111.16 Aligned_cols=103 Identities=18% Similarity=0.308 Sum_probs=83.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|+|+|++|++|+..+..+.+|||+++++... + ...++|++++++.+|.|||+|.|.+.... ...|.|.|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA-S--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC-C--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC
Confidence 6899999999999887889999999998542 1 24679999999999999999999886543 24799999999988
Q ss_pred CCcceeEEEEEcCCCCCh-HHHHHHHHHhh
Q psy6698 126 KKKQLIGWFSLGQNSTSE-EELAHWNEMCK 154 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~ 154 (170)
++++||++.++++.+.. .....|++|..
T Consensus 77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~ 105 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNP 105 (119)
T ss_pred -CCcccEEEEEEHHHCCCCCcEEEEEECCC
Confidence 89999999999987654 13445665543
No 50
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=1e-17 Score=111.92 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=87.2
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
+|+|+|++|++|+..+..+.+|||+++++. + ...+|++++++.+|.|+|+|.|.+.... ...|.|.|||++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---G---QTLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---C---EEEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCC
Confidence 589999999999998878889999999983 2 3568999999999999999999987643 3589999999999
Q ss_pred CCCcceeEEEEEcCCCCCh-HHHHHHHHHhhcC
Q psy6698 125 LKKKQLIGWFSLGQNSTSE-EELAHWNEMCKVK 156 (170)
Q Consensus 125 ~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~~ 156 (170)
.+++++||++.+++.++.. .....|+.|.+..
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~ 105 (123)
T cd04025 73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDP 105 (123)
T ss_pred CCCCcEeEEEEEEHHHcccCCCCCCEEECCCCC
Confidence 8899999999999986643 1457899887643
No 51
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.76 E-value=1.4e-17 Score=113.25 Aligned_cols=107 Identities=16% Similarity=0.290 Sum_probs=88.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC-------------Cccc
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF-------------HLSD 112 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~-------------~l~~ 112 (170)
|.|.|++|++|+.. ..+.+|||+++++..+ .....++|++++++.+|.|+|+|.|.+... ++..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~--~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS--SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC--CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccc
Confidence 57899999999988 7789999999999742 123578999999999999999999997654 3345
Q ss_pred eEEEEEEEeCCCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhhc
Q psy6698 113 VTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCKV 155 (170)
Q Consensus 113 ~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~ 155 (170)
..|.|.||+++..+++++||++.+++..+.. .....|+.|.++
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 6899999999988889999999999987643 245788887664
No 52
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=9.8e-18 Score=113.47 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=87.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeC-CCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSS-SGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~-~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
|+|+|++|++|+..+..+.+|||+++++... .+......+|++++++.+|.|||+|.|.+.... ..|.|.|||++.
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE---HRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC---CEEEEEEEECCC
Confidence 7899999999999888889999999999753 122334578999999999999999999986543 478999999999
Q ss_pred CCCcceeEEEEEcCCCCChH-------HHHHHHHHhh
Q psy6698 125 LKKKQLIGWFSLGQNSTSEE-------ELAHWNEMCK 154 (170)
Q Consensus 125 ~~~~~~iG~~~i~l~~~~~~-------~~~~W~~l~~ 154 (170)
.+++++||++.++++++... ....|+.|.+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~ 115 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence 88999999999998865431 2358998864
No 53
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.8e-17 Score=110.42 Aligned_cols=101 Identities=18% Similarity=0.304 Sum_probs=84.0
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 46 IFIEVIKGSHFRNVA-MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 46 L~v~i~~a~~L~~~~-~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
|.|.|++|+||+..+ ..|.+|||+.+++. +. ...+|+++++|.+|.|||+|.|.+.... ..|.|.||+++.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~---~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~~---~~l~~~v~d~~~ 73 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD---QE--EVFRTKTVEKSLCPFFGEDFYFEIPRTF---RHLSFYIYDRDV 73 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC---Cc--cEEEeeEEECCCCCccCCeEEEEcCCCC---CEEEEEEEECCC
Confidence 679999999999864 45788999999883 21 3578999999999999999999987542 589999999999
Q ss_pred CCCcceeEEEEEcCCCCCh-HHHHHHHHHhh
Q psy6698 125 LKKKQLIGWFSLGQNSTSE-EELAHWNEMCK 154 (170)
Q Consensus 125 ~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~ 154 (170)
++++++||.+.++++.+.. ...+.|++|.+
T Consensus 74 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 104 (121)
T cd08401 74 LRRDSVIGKVAIKKEDLHKYYGKDTWFPLQP 104 (121)
T ss_pred CCCCceEEEEEEEHHHccCCCCcEeeEEEEc
Confidence 9999999999999987653 24567988865
No 54
>KOG1030|consensus
Probab=99.75 E-value=1.2e-17 Score=114.07 Aligned_cols=98 Identities=23% Similarity=0.301 Sum_probs=85.0
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeC
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
.|-|.|.|.+|.+|...+..+.+||||.+.+.. .+.+|+++.++.||+|||.|.|.+.-.. ..|.+.|||+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~------q~lkT~~v~~n~NPeWNe~ltf~v~d~~---~~lkv~VyD~ 75 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN------QKLKTRVVYKNLNPEWNEELTFTVKDPN---TPLKVTVYDK 75 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECC------eeeeeeeecCCCCCcccceEEEEecCCC---ceEEEEEEeC
Confidence 567899999999999998879999999999954 3778889999999999999999887654 6999999999
Q ss_pred CCCCCcceeEEEEEcCCCCChHHHHHHH
Q psy6698 123 KSLKKKQLIGWFSLGQNSTSEEELAHWN 150 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~~~~~~~~W~ 150 (170)
|.+++|||||.+.|++...-. ...-|+
T Consensus 76 D~fs~dD~mG~A~I~l~p~~~-~~~~~~ 102 (168)
T KOG1030|consen 76 DTFSSDDFMGEATIPLKPLLE-AQKMDY 102 (168)
T ss_pred CCCCcccccceeeeccHHHHH-Hhhhhc
Confidence 999999999999999987654 333443
No 55
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=2.9e-17 Score=111.53 Aligned_cols=94 Identities=19% Similarity=0.369 Sum_probs=81.0
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEe
Q psy6698 42 TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYD 121 (170)
Q Consensus 42 ~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~ 121 (170)
..+.|.|+|++|++|+..+..|.+|||+++.+.. ..++|++++++.+|.|||+|.|.+.... ...|.|.|||
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~t~nP~Wne~f~f~v~~~~--~~~l~i~V~D 84 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSDTLNPKWNSSMQFFVKDLE--QDVLCITVFD 84 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCCCCCCccCceEEEEecCcc--CCEEEEEEEE
Confidence 4577899999999999988889999999999832 3689999999999999999999886432 3589999999
Q ss_pred CCCCCCcceeEEEEEcCCCCCh
Q psy6698 122 RKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
++..+++++||++.+++.++..
T Consensus 85 ~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 85 RDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCCCCCeeEEEEEEHHHhcc
Confidence 9998899999999999986543
No 56
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=1e-17 Score=111.45 Aligned_cols=116 Identities=17% Similarity=0.244 Sum_probs=94.6
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
|.|.|+|++|++|+..+..+.+|||+++.+. +. ..++|++++++.+|.|||.|.|.+.... ..|.|.||+++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~---~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~~---~~L~v~v~d~~ 72 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GI--VKGRTVTISNTLNPVWDEVLYVPVTSPN---QKITLEVMDYE 72 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC---CE--EeeceeEECCCcCCccCceEEEEecCCC---CEEEEEEEECC
Confidence 5689999999999998888899999999982 21 4678888999999999999999876543 48999999999
Q ss_pred CCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccc
Q psy6698 124 SLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILC 167 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~ 167 (170)
..+++++||++.+++.++-....+.||.++........+-..|.
T Consensus 73 ~~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T cd04045 73 KVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLLSLK 116 (120)
T ss_pred CCCCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceeeEeeccc
Confidence 99999999999999887654466889988887655555554443
No 57
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=1.2e-17 Score=110.97 Aligned_cols=102 Identities=23% Similarity=0.350 Sum_probs=86.3
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
|.|.|+|++|++|+..+..+.+|||+++++.. ...+|++++++.+|.|+|+|.|.+... ...+.|.|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~~~~~~~---~~~l~~~v~d~~ 71 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYKTLNPEWNKIFTFPIKDI---HDVLEVTVYDED 71 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecCCcCCccCcEEEEEecCc---CCEEEEEEEECC
Confidence 57899999999999988888899999999842 246899999999999999999987542 258999999999
Q ss_pred CCCCcceeEEEEEcCCCCChHHHHHHHHHhhc
Q psy6698 124 SLKKKQLIGWFSLGQNSTSEEELAHWNEMCKV 155 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~ 155 (170)
..+++++||++.+++..+.. +...|+.|...
T Consensus 72 ~~~~~~~iG~~~~~l~~~~~-~~~~~~~l~~~ 102 (119)
T cd08377 72 KDKKPEFLGKVAIPLLSIKN-GERKWYALKDK 102 (119)
T ss_pred CCCCCceeeEEEEEHHHCCC-CCceEEECccc
Confidence 88889999999999987765 56688887654
No 58
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=7.4e-17 Score=107.95 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=91.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
.|+|.|++|++|+..+..+.+|||+++++.. .....+|.+++++.+|.|||+|.|.+.... ...|.|.|||++.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGK----KKINDRDNYIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECC----eeccceeeEEECCCCCccceEEEEEecCCC--CCEEEEEEEECCC
Confidence 3789999999999998889999999999843 123467788889999999999999875433 3589999999999
Q ss_pred CCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCee----eecccccc
Q psy6698 125 LKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQL----ARWHILCG 168 (170)
Q Consensus 125 ~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~----~~w~~l~~ 168 (170)
.+++++||++.+++++..- ..+|+.+...+..+. .-||.|.+
T Consensus 75 ~~~dd~iG~~~i~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 75 LGSDDLIGETVIDLEDRFF--SKHRATCGLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred CCCCceeEEEEEeeccccc--chHHHhccCCCcccccCceecCcccCc
Confidence 9899999999999997652 567777766555443 34555544
No 59
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=3e-17 Score=106.74 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=74.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|.|+|++|++|+..+..+.+|||+++++. + ..++|+++.++.+|.|||.|.|.+...+ ...|.|.||+++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---K---TTQKSKVKERTNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC---C---EEEeCccccCCCCCcccceEEEEeCCCC--CCEEEEEEEECCC-
Confidence 78999999999998888899999999983 2 4778999999999999999999987643 2489999999875
Q ss_pred CCcceeEEEEEcCCCCC
Q psy6698 126 KKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~ 142 (170)
+++||++.+++.++.
T Consensus 73 --~~~iG~~~i~l~~l~ 87 (105)
T cd04050 73 --GKSLGSLTLPLSELL 87 (105)
T ss_pred --CCccEEEEEEHHHhh
Confidence 789999999987653
No 60
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.73 E-value=3.8e-17 Score=108.90 Aligned_cols=101 Identities=19% Similarity=0.366 Sum_probs=83.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|.|+|++|++|+..+..|.+|||+++.+. +. ...+|++++++.+|.|||.|.|.+.... ..|.|.+|+++.+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~---~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~~---~~l~v~v~d~~~~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD---NE--VIIRTATVWKTLNPFWGEEYTVHLPPGF---HTVSFYVLDEDTL 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC---CE--eeeeeeeEcCCCCCcccceEEEeeCCCC---CEEEEEEEECCCC
Confidence 78999999999999988999999999883 21 3468999999999999999999876432 5899999999999
Q ss_pred CCcceeEEEEEcCCCCCh--HHHHHHHHHhh
Q psy6698 126 KKKQLIGWFSLGQNSTSE--EELAHWNEMCK 154 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~--~~~~~W~~l~~ 154 (170)
+++++||++.++++.+.. ...++|+.|.+
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~ 104 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTE 104 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECee
Confidence 999999999999765432 12566777754
No 61
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=3.2e-17 Score=108.71 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=84.0
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeeccee-CCCCCeeeeeEEEEeecCCccceEEEEEEEeC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR-GQPNPLFKETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~-~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
|.|.|+|++|++|+..+..+.+|||+++.+.. ..++|+++. .+.+|.|||.|.|.+.... ...|.|.|||+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~--~~~l~i~v~d~ 72 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITEDK--KPILKVAVFDD 72 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEecCCC--CCEEEEEEEeC
Confidence 57899999999999988888999999999833 356777765 5789999999999987643 35899999999
Q ss_pred CCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhhc
Q psy6698 123 KSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCKV 155 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~ 155 (170)
+..+ +++||++.+++.++.. ....+|++|...
T Consensus 73 ~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 105 (118)
T cd08681 73 DKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLK 105 (118)
T ss_pred CCCC-CcceEEEEEecHHHhhcCCCCCcEEeccC
Confidence 8766 8999999999986532 256788888653
No 62
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=7.4e-18 Score=115.97 Aligned_cols=107 Identities=19% Similarity=0.311 Sum_probs=84.3
Q ss_pred eEEEEEEEeecCCCCCCCC--------------CCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc
Q psy6698 45 RIFIEVIKGSHFRNVAMTR--------------APDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL 110 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~--------------~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l 110 (170)
.|.|+|++|++|+.++..+ .+||||++.+. + ...+|++++++.+|+|||+|.|.+.....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g---~~~kT~v~~~t~nPvWNE~f~f~v~~p~~ 74 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---G---QKVKTSVKKNSYNPEWNEQIVFPEMFPPL 74 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---C---EeeecceEcCCCCCCcceEEEEEeeCCCc
Confidence 3789999999999987543 68999999983 3 25689999999999999999999754443
Q ss_pred cceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHH--------HHHHHhhcCCC
Q psy6698 111 SDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELA--------HWNEMCKVKGE 158 (170)
Q Consensus 111 ~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~--------~W~~l~~~~~~ 158 (170)
. ..|.|+|||++..+++++||++.+++..+...+.+ +|+.+-..|++
T Consensus 75 ~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 75 C-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred C-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 2 58999999999998999999999999865443443 55555554444
No 63
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=2e-17 Score=111.10 Aligned_cols=104 Identities=20% Similarity=0.311 Sum_probs=86.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
+|+|.|++|++|+..+..+.+|||+++++.. ...+|++++++.+|.|+|+|.|.+... ...|.|.|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCC
Confidence 5899999999999988888999999999832 357899999999999999999987543 2479999999874
Q ss_pred C-----------CCcceeEEEEEcCCCCChHHHHHHHHHhhcCCC
Q psy6698 125 L-----------KKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGE 158 (170)
Q Consensus 125 ~-----------~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~ 158 (170)
. +.+++||++.+++..... ....|+.|.+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~-~~~~w~~L~~~~~~ 116 (127)
T cd04027 73 DIKSRLKQKFTRESDDFLGQTIIEVRTLSG-EMDVWYNLEKRTDK 116 (127)
T ss_pred CcccccceeccccCCCcceEEEEEhHHccC-CCCeEEECccCCCC
Confidence 2 468999999999987765 66789999876544
No 64
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=8.3e-17 Score=108.00 Aligned_cols=101 Identities=15% Similarity=0.281 Sum_probs=82.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|.|+|++|++|+. ..+.+|||+++++.. ....++|++++++.+|.|||.|.|.+... ...|.|.|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE----PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC----CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCC
Confidence 5799999999987 568899999999832 12467999999999999999999998643 35799999999998
Q ss_pred CCcceeEEEEEcCCCCCh-HHHHHHHHHhhc
Q psy6698 126 KKKQLIGWFSLGQNSTSE-EELAHWNEMCKV 155 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~ 155 (170)
+++++||++.++++++.. ....+|+.|...
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 102 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGR 102 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecCC
Confidence 889999999999987543 244677777644
No 65
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.72 E-value=1.4e-17 Score=114.83 Aligned_cols=108 Identities=20% Similarity=0.315 Sum_probs=85.1
Q ss_pred EeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCC-----------------------ccceeeecceeCCCCC
Q psy6698 39 YNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQ-----------------------EMSRAKTSVRRGQPNP 95 (170)
Q Consensus 39 ~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~-----------------------~~~~~~t~~~~~t~~p 95 (170)
..+....|.|+|++|++|...+..|.+|||+++.+.++... ....++|+++.++.+|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 34567889999999999999998899999999998643111 0124789999999999
Q ss_pred eeeeeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHH
Q psy6698 96 LFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEM 152 (170)
Q Consensus 96 ~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l 152 (170)
.|||+|.|.+... ....|.|.|||++ +++||++.++++++...+.++||.|
T Consensus 103 ~WnE~F~f~v~~~--~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV--SNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC--CCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 9999999988543 2358999999987 7999999999987653255666543
No 66
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=5.1e-17 Score=106.68 Aligned_cols=105 Identities=28% Similarity=0.437 Sum_probs=83.8
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeec--CCccceEEEEEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVAL--FHLSDVTLVVSVY 120 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~--~~l~~~~l~i~v~ 120 (170)
...|+|+|++|++|+ .+.+|||+++.+.. .+++|++++++.+|.|+|+|.|.+.. .++.+..|.|.||
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG------QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC------EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 456899999999998 46799999999843 35689999999999999999998643 2333468999999
Q ss_pred eCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeeccccc
Q psy6698 121 DRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILC 167 (170)
Q Consensus 121 ~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~ 167 (170)
+++.++++++||++.+++..... .........|.+|.
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~----------~~~~~~~~~w~~L~ 109 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYD----------QPDHAFLRKWLLLT 109 (111)
T ss_pred cCcccccCCccEEEEECCccccC----------CCCCcceEEEEEee
Confidence 99988889999999999987643 11234466787775
No 67
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.72 E-value=8.9e-17 Score=110.05 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=89.0
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
|.|.|.|++|++|+..+. +.+|||+++.+.. ..++|++++++.+|.|||+|.|.+... ...+.|.|||++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKD 71 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECC
Confidence 578999999999998876 7899999999832 368999999999999999999998654 358999999999
Q ss_pred CCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 124 SLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
.++++++||++.+++..+-......|..-. ..+..+.+|.+-
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 113 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPS 113 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEecC
Confidence 999999999999999876542222332222 345667788763
No 68
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.72 E-value=1.4e-16 Score=109.71 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=84.2
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC------CccceEEEE
Q psy6698 46 IFIEVIKGSH--FRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF------HLSDVTLVV 117 (170)
Q Consensus 46 L~v~i~~a~~--L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~------~l~~~~l~i 117 (170)
..++|..|++ ++.....+..||||++++.-+ +......+|+++++|.||+|||+|.|.+... .+.+..|.|
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p-~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYP-NEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecC-CCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 3455555555 677776778999999997432 2345689999999999999999999998655 345678999
Q ss_pred EEEeCCCC-CCcceeEEEEEcCCCCChH-HHHHHHHHhh
Q psy6698 118 SVYDRKSL-KKKQLIGWFSLGQNSTSEE-ELAHWNEMCK 154 (170)
Q Consensus 118 ~v~~~~~~-~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~ 154 (170)
.|||++.+ ++|++||++.++|..+... +...|++|+.
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 99999876 5799999999999987442 5566887764
No 69
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=1.6e-16 Score=107.80 Aligned_cols=87 Identities=15% Similarity=0.303 Sum_probs=72.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeec-----CCc--cceEEEE
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVAL-----FHL--SDVTLVV 117 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~-----~~l--~~~~l~i 117 (170)
+|+|.|++|++|+..+..|.+|||+++.+.. ..++|++++++.||.|||+|.|.+.. .++ ....|.|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v 75 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV 75 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence 6899999999999999889999999999842 36789999999999999999997432 111 1146899
Q ss_pred EEEeCCCCCCcceeEEEEEc
Q psy6698 118 SVYDRKSLKKKQLIGWFSLG 137 (170)
Q Consensus 118 ~v~~~~~~~~~~~iG~~~i~ 137 (170)
.|||++..+++++||++.+.
T Consensus 76 ~V~d~d~~~~d~~iG~~~i~ 95 (135)
T cd04017 76 ELFDQDSVGKDEFLGRSVAK 95 (135)
T ss_pred EEEeCcCCCCCccceEEEee
Confidence 99999998999999999874
No 70
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.71 E-value=3.5e-17 Score=109.81 Aligned_cols=102 Identities=20% Similarity=0.355 Sum_probs=80.8
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
..|+|.|++|+||+.. +.+|||+++.+. + ....+|++. .+.+|.|||+|.|.+...++ ..+.|.||+++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~---~--~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~ 72 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN---E--VKVARTKVR-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKA 72 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEEC---C--EeEEEeecC-CCCCCccCCEEEEecCCCCc--CEEEEEEEECC
Confidence 4689999999999874 468999999983 2 134577764 57899999999998655443 36889999999
Q ss_pred CCCCcceeEEEEEcCCCCCh-HHHHHHHHHhhcC
Q psy6698 124 SLKKKQLIGWFSLGQNSTSE-EELAHWNEMCKVK 156 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~~ 156 (170)
..+++++||++.+++..+.. ...+.|+.|.+..
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~ 106 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSAS 106 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCcccEeEEcccCC
Confidence 99999999999999986543 2557899997753
No 71
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=1.1e-16 Score=107.56 Aligned_cols=104 Identities=16% Similarity=0.259 Sum_probs=86.3
Q ss_pred CeEEEEEEEeecCCCCCC--CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEe
Q psy6698 44 GRIFIEVIKGSHFRNVAM--TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYD 121 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~--~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~ 121 (170)
|.|.|+|++|++|+..+. .+.+|||+.+++.. ...+|++++++.+|.|+|+|.|.+... ....|.|.|||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~~P~Wne~f~~~~~~~--~~~~l~i~v~d 72 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPNTLNPKWNYWCEFPIFSA--QNQLLKLILWD 72 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecCCcCCccCCcEEEEecCC--CCCEEEEEEEE
Confidence 568999999999999887 78899999998732 367999999999999999999988752 23589999999
Q ss_pred CCCCCCcceeEEEEEcCCCCC---h-HHHHHHHHHhhc
Q psy6698 122 RKSLKKKQLIGWFSLGQNSTS---E-EELAHWNEMCKV 155 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~~---~-~~~~~W~~l~~~ 155 (170)
++..+++++||++.+++.++. . .....|+.|...
T Consensus 73 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 73 KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 998888999999999998653 1 235688888654
No 72
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=3.1e-17 Score=109.32 Aligned_cols=99 Identities=21% Similarity=0.384 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|+|+|++|++|+.. .+|||+++.+.. ...+|++++++.||.|||+|.|.+... ....|.|.|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN------YKGSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC------ccccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCCC
Confidence 78999999999877 689999999832 367999999999999999999986542 346899999999876
Q ss_pred CCcceeEEEEEcCCCCChH------HHHHHHHHhhcCC
Q psy6698 126 KKKQLIGWFSLGQNSTSEE------ELAHWNEMCKVKG 157 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~~------~~~~W~~l~~~~~ 157 (170)
++++||++.++++++... ....|+.|...++
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 789999999999876431 2357888876553
No 73
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.70 E-value=4e-16 Score=104.57 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=83.6
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
.|+|+|++|++|+..+..+..|||+++.+.. + .....+|++++++.+|.|||+|.|.+.... ...|.|.||+++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~--~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~--~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTN--G-KRRIAKTRTIYDTLNPRWDEEFELEVPAGE--PLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECC--C-CeeeecccEecCCCCCcccceEEEEcCCCC--CCEEEEEEEECCC
Confidence 5799999999999988888999999998632 1 234679999999999999999999987642 3589999999998
Q ss_pred CCCcceeEEEEEcCCCCCh----HHHHHHHHHhh
Q psy6698 125 LKKKQLIGWFSLGQNSTSE----EELAHWNEMCK 154 (170)
Q Consensus 125 ~~~~~~iG~~~i~l~~~~~----~~~~~W~~l~~ 154 (170)
.+++++||++.++++.... ...+.|+.|.+
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence 8889999999999875321 12345666643
No 74
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.70 E-value=5.1e-17 Score=112.99 Aligned_cols=110 Identities=20% Similarity=0.316 Sum_probs=87.5
Q ss_pred CCeEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEEeCCCCccceeeecceeCC
Q psy6698 43 TGRIFIEVIKGSHFRNVA------------------------------MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQ 92 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~------------------------------~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t 92 (170)
.|.|.|+|.+|++|+.++ ..|.+|||+++.+.. . ...+|+++.++
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~---~--~~~rT~v~~~~ 80 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG---A--RVARTRVIENS 80 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC---e--EeeEEEEeCCC
Confidence 588999999999999876 246689999999832 1 34699999999
Q ss_pred CCCeeeeeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhhcCCCeee
Q psy6698 93 PNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCKVKGEQLA 161 (170)
Q Consensus 93 ~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~~~~~~~ 161 (170)
.||.|||+|.|.+.... ..|.|.|||++.++ +++||++.++++.+.. ...++|++|....++++.
T Consensus 81 ~nP~WnE~F~~~~~~~~---~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~ 146 (158)
T cd04015 81 ENPVWNESFHIYCAHYA---SHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPK 146 (158)
T ss_pred CCCccceEEEEEccCCC---CEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCC
Confidence 99999999999875432 47999999998775 5899999999987543 256789998776555443
No 75
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.70 E-value=2.7e-16 Score=105.26 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=77.3
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEe
Q psy6698 42 TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYD 121 (170)
Q Consensus 42 ~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~ 121 (170)
..++|.|+|++|++|+. +..+.+|||+++++. + .+++|++++++.+|.|||+|.|...... ....|.|.|||
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~---~~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D 97 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---G---QEKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWD 97 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---C---ccccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEe
Confidence 45778999999999984 556788999999983 3 2789999999999999999999743221 23589999999
Q ss_pred CCCCCCcceeEEEEEcCCCCC
Q psy6698 122 RKSLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~~ 142 (170)
++..+++++||++.+++.+..
T Consensus 98 ~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 98 RDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCCeeEEEEEEecCCc
Confidence 999999999999999998654
No 76
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.70 E-value=5.7e-17 Score=107.84 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=83.5
Q ss_pred CeEEEEEEEeecCCCCCC------CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEE
Q psy6698 44 GRIFIEVIKGSHFRNVAM------TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVV 117 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~------~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i 117 (170)
|.|.|+|++|++|+..+. .+.+|||+++++.. ..++|++++++.+|.|+|+|.|.+.... ...|.|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~~P~W~e~f~~~v~~~~--~~~l~i 72 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKENLNPKWNEVYEAVVDEVP--GQELEI 72 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCCCCCCcccceEEEEeCCCC--CCEEEE
Confidence 468999999999998764 36789999999832 4689999999999999999999876532 358999
Q ss_pred EEEeCCCCCCcceeEEEEEcCCCCChH-HHHHHHHHhhc
Q psy6698 118 SVYDRKSLKKKQLIGWFSLGQNSTSEE-ELAHWNEMCKV 155 (170)
Q Consensus 118 ~v~~~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~~ 155 (170)
.|||++.. ++++||++.+++.++... ..+.|++|...
T Consensus 73 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 110 (121)
T cd08391 73 ELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV 110 (121)
T ss_pred EEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC
Confidence 99999987 889999999999865432 34678877653
No 77
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=4.4e-16 Score=103.29 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=76.0
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
+.|.|+|++|++|+..+ ..+||+.+.+.. .+.+|++.+.+ +|.|||.|.|.+...+ ..|.|.||+++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~------~k~kT~v~~~~-nP~WnE~F~F~~~~~~---~~L~v~V~dkd 68 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN------VKSTTIAVRGS-QPCWEQDFMFEINRLD---LGLVIELWNKG 68 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC------EEeEeeECCCC-CCceeeEEEEEEcCCC---CEEEEEEEeCC
Confidence 57899999999997543 458999999832 36788888774 9999999999986432 45999999998
Q ss_pred CCCCcceeEEEEEcCCCCCh---HHHHHHHHHhh
Q psy6698 124 SLKKKQLIGWFSLGQNSTSE---EELAHWNEMCK 154 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~---~~~~~W~~l~~ 154 (170)
.+ +|++||++.|+|.+... ....+||.|.+
T Consensus 69 ~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 69 LI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred Cc-CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 65 79999999999996543 13357777753
No 78
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.68 E-value=6.1e-16 Score=103.45 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=85.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeeccee-CCCCCeeeeeEEEEeecCCc-cceEEEEEEEe
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR-GQPNPLFKETFVFQVALFHL-SDVTLVVSVYD 121 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~-~t~~p~~~e~~~f~~~~~~l-~~~~l~i~v~~ 121 (170)
|.|.|.|++|++|+..+..+.+|||+++.+.. ..++|++.+ ++.+|.|||+|.|.+..... ....|.|.|||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 74 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMD 74 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEE
Confidence 57899999999999888788999999999732 245777766 48999999999999876532 13589999999
Q ss_pred CCCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhhc
Q psy6698 122 RKSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCKV 155 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~ 155 (170)
++.++++++||++.+++.++.. ...+.|+.|.+.
T Consensus 75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CccCCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 9988889999999999987643 245678777654
No 79
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=7.6e-16 Score=102.89 Aligned_cols=102 Identities=19% Similarity=0.329 Sum_probs=84.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
.|+|+|++|++|+..+..+.+|||+++++. + ...++|++++++.+|.|||+|.|.+.. ...|.|.||+++.
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~---~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~ 71 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD---G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKK 71 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC---C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCC
Confidence 378999999999998888899999999983 2 246789999999999999999999865 2589999999987
Q ss_pred CCC--cceeEEEEEcCCCCChH--HHHHHHHHhhc
Q psy6698 125 LKK--KQLIGWFSLGQNSTSEE--ELAHWNEMCKV 155 (170)
Q Consensus 125 ~~~--~~~iG~~~i~l~~~~~~--~~~~W~~l~~~ 155 (170)
.++ +++||++.+++.++... ....|+.|...
T Consensus 72 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 106 (123)
T cd08382 72 FKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKL 106 (123)
T ss_pred CCCCCCceEeEEEEEHHHccccCCCccceeEeecC
Confidence 765 57999999999976431 23678887443
No 80
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.67 E-value=3.1e-16 Score=105.20 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=81.9
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
..|+|+|++|++|...+..|.+|||+++.+. + ...+|++++++.+|.|||.|.|.+... ...|.|.|||++
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~---~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~ 73 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---G---ESVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSN 73 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---C---EEEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECC
Confidence 4689999999999998888899999999873 2 367999999999999999999987543 368999999998
Q ss_pred CCCCcceeEEEEEcCCCCChHHHHHHHHHh
Q psy6698 124 SLKKKQLIGWFSLGQNSTSEEELAHWNEMC 153 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~ 153 (170)
..+ +++||.+.+++++... ....|+.|.
T Consensus 74 ~~~-d~~lG~~~~~l~~~~~-~~~~~~~l~ 101 (126)
T cd04046 74 LLC-DEFLGQATLSADPNDS-QTLRTLPLR 101 (126)
T ss_pred CCC-CCceEEEEEecccCCC-cCceEEEcc
Confidence 764 8999999999987554 445555554
No 81
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=1e-15 Score=100.98 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=81.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|+|.|++|++|+..+..+.+|||+++.+. +. ..++|+++.++.+|.|+|+|.|.+... ....+.|.+|+++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~---~~--~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN---GE--KVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC---CC--cceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCC
Confidence 57899999999998877889999999983 21 457899999999999999999997654 235899999999988
Q ss_pred CCcceeEEEEEcCCCCCh-HHHHHHHHHh
Q psy6698 126 KKKQLIGWFSLGQNSTSE-EELAHWNEMC 153 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~-~~~~~W~~l~ 153 (170)
+++++||++.+++.++.. ...+.|.+|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~ 102 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEPEETTELTLPLD 102 (115)
T ss_pred CCCCceEEEEEEHHHcCCCCcEEEEEECc
Confidence 889999999999886543 1233444443
No 82
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.66 E-value=1e-15 Score=100.25 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=70.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeC---
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDR--- 122 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~--- 122 (170)
|.|+|.+|+||+ +.+||||++.+.+. +......+|+++++|.+|+|||+|.|.+.. ...|.+.||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~-~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSF-GYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCc-cccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEcccc
Confidence 579999999995 45899999988662 333457899999999999999999999863 24999999997
Q ss_pred ----CCCCCcceeEEEEEcCCC
Q psy6698 123 ----KSLKKKQLIGWFSLGQNS 140 (170)
Q Consensus 123 ----~~~~~~~~iG~~~i~l~~ 140 (170)
+..+.|+++|.+.+.|+.
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 456789999999998874
No 83
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=1.3e-15 Score=101.27 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=77.2
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEEeCC-CCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC---
Q psy6698 49 EVIKGSHFRNVAMTRAPDTYVKLMLLSSS-GQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS--- 124 (170)
Q Consensus 49 ~i~~a~~L~~~~~~~~~~p~v~~~l~~~~-~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~--- 124 (170)
..++|++|+..+..+.+|||+++++..+. +.....++|++++++.+|.|+|+|.|.+..... ..|.|.|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~ 82 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcC
Confidence 45789999998888999999999998643 234457899999999999999999998654432 479999999986
Q ss_pred -CCCcceeEEEEEcCCCCCh
Q psy6698 125 -LKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 125 -~~~~~~iG~~~i~l~~~~~ 143 (170)
.+++++||++.+++.++..
T Consensus 83 ~~~~~d~iG~~~i~l~~l~~ 102 (120)
T cd04048 83 DLSDHDFLGEAECTLGEIVS 102 (120)
T ss_pred CCCCCcEEEEEEEEHHHHhc
Confidence 7899999999999987643
No 84
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.66 E-value=7.6e-16 Score=101.85 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=82.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|.|+|++|++|+.. +.+|||+.+++. +. ..++|+++++ .+|.|||+|.|.+...++....|.|.+|+.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~---~~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD---QV--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC---CE--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence 78999999999876 689999999983 21 3578888888 999999999999988766667889999998877
Q ss_pred CCcceeEEEEEcCCCCChHHHHHHHHHhhcC
Q psy6698 126 KKKQLIGWFSLGQNSTSEEELAHWNEMCKVK 156 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~ 156 (170)
.++.++|.+.|.....+. ..++|++|.+.+
T Consensus 73 ~~~~~~g~v~l~~~~~~~-~~~~w~~L~~~~ 102 (117)
T cd08383 73 DRDIVIGKVALSKLDLGQ-GKDEWFPLTPVD 102 (117)
T ss_pred CCeeEEEEEEecCcCCCC-cceeEEECccCC
Confidence 777888888877766655 678899987654
No 85
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.65 E-value=3.6e-15 Score=101.10 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=81.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCc--------cceeeecceeCCCCCee-eeeEEEEeecCCccceEE
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQE--------MSRAKTSVRRGQPNPLF-KETFVFQVALFHLSDVTL 115 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~--------~~~~~t~~~~~t~~p~~-~e~~~f~~~~~~l~~~~l 115 (170)
..+|.+++|++|+ .+..|.+|||+++++.++ ++. ...++|++++++.||.| ||+|.|.+... ..|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~-~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPG-KRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECC-CcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEE
Confidence 3579999999998 566789999999999763 222 24789999999999999 99999988644 379
Q ss_pred EEEEEeCCCCCC---cceeEEEEEcCCCCCh----HHHHHHHHHhhc
Q psy6698 116 VVSVYDRKSLKK---KQLIGWFSLGQNSTSE----EELAHWNEMCKV 155 (170)
Q Consensus 116 ~i~v~~~~~~~~---~~~iG~~~i~l~~~~~----~~~~~W~~l~~~ 155 (170)
.|.|||++..++ +++||++.+++.++-. .+...|+.+.++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 999999765433 6999999999987642 124456655544
No 86
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.65 E-value=2.2e-15 Score=101.82 Aligned_cols=103 Identities=16% Similarity=0.308 Sum_probs=83.3
Q ss_pred CCeEEEEEEEeecCCCCCCC----------CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccc
Q psy6698 43 TGRIFIEVIKGSHFRNVAMT----------RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSD 112 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~----------~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~ 112 (170)
.+.|+|+|++|++|...+.. +.+|||+++.+. ++ ...+|++++++.+|.|||+|.|.+.. .
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~---~~--~~~kT~~~~~t~~P~Wne~f~~~v~~----~ 73 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD---DT--HIGKTSTKPKTNSPVWNEEFTTEVHN----G 73 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC---CE--EEeEEeEcCCCCCCCcceeEEEEcCC----C
Confidence 36789999999999877652 578999999983 22 34688888999999999999999863 2
Q ss_pred eEEEEEEEeCCCCCCcceeEEEEEcCCCCCh---HHHHHHHHHhh
Q psy6698 113 VTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE---EELAHWNEMCK 154 (170)
Q Consensus 113 ~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~---~~~~~W~~l~~ 154 (170)
..|.|.||+++..+++++||++.++++++.. ...+.|++|.+
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 118 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP 118 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC
Confidence 5899999999988889999999999986543 24577887763
No 87
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=2.7e-16 Score=105.31 Aligned_cols=109 Identities=20% Similarity=0.292 Sum_probs=85.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeeccee-CCCCCeeeeeEEEEeecCCc--cceEEEEEEEe
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR-GQPNPLFKETFVFQVALFHL--SDVTLVVSVYD 121 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~-~t~~p~~~e~~~f~~~~~~l--~~~~l~i~v~~ 121 (170)
.|.|+|++|++|+..+..+..|||+.+++.. ...++|++.. ++.+|.|||.|.|.+....+ ....|.|.||+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEE
Confidence 3789999999999988888999999999843 1356787765 58999999999999876532 23689999999
Q ss_pred CCCCCCcceeEEEEEcCCCCChHH------HHHHHHHhhcCCC
Q psy6698 122 RKSLKKKQLIGWFSLGQNSTSEEE------LAHWNEMCKVKGE 158 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~~~~~------~~~W~~l~~~~~~ 158 (170)
++.++++++||++.+++.++.... ...||+|....++
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~ 118 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence 998888999999999998654311 2467777654444
No 88
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=5e-15 Score=99.46 Aligned_cols=101 Identities=23% Similarity=0.300 Sum_probs=81.2
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCCCCcc
Q psy6698 50 VIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQ 129 (170)
Q Consensus 50 i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~ 129 (170)
|++|++|+. ..+.+|||+++++. + ..++|++++++.+|.|+|+|.|.+.........|.|.||+++..++++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~ 73 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---G---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR 73 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---C---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCc
Confidence 678999988 56789999999983 2 357999999999999999999998654334468999999999888899
Q ss_pred eeEEEEEcCCCCChH-HHHHHHHHhhcCCC
Q psy6698 130 LIGWFSLGQNSTSEE-ELAHWNEMCKVKGE 158 (170)
Q Consensus 130 ~iG~~~i~l~~~~~~-~~~~W~~l~~~~~~ 158 (170)
+||++.++++++... ....|+.|....++
T Consensus 74 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~ 103 (127)
T cd08373 74 LIGSATVSLQDLVSEGLLEVTEPLLDSNGR 103 (127)
T ss_pred eEEEEEEEhhHcccCCceEEEEeCcCCCCC
Confidence 999999999876542 44568887654443
No 89
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=6.1e-15 Score=98.43 Aligned_cols=93 Identities=23% Similarity=0.339 Sum_probs=77.9
Q ss_pred CeEEEEEEEeecCCCCC-CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeC
Q psy6698 44 GRIFIEVIKGSHFRNVA-MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~-~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
|.|.|+|++|++|+..+ ..+.+|||+++.+..+ ....+|+++.++.+|.|||.|.|.+.. ....|.|.||++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~~---~~~~l~~~v~d~ 74 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVNS---LTEPLNLTVYDF 74 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeCC---CCCEEEEEEEec
Confidence 57899999999999654 3467899999998431 256899999999999999999998873 235899999999
Q ss_pred CCCCCcceeEEEEEcCCCCCh
Q psy6698 123 KSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~~~ 143 (170)
+..+++++||.+.+++.++..
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~ 95 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQ 95 (124)
T ss_pred CCCCCCceeEEEEEEHHHhcc
Confidence 988889999999999987654
No 90
>KOG1013|consensus
Probab=99.62 E-value=7.2e-16 Score=114.99 Aligned_cols=140 Identities=24% Similarity=0.310 Sum_probs=128.2
Q ss_pred CCCccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEee
Q psy6698 27 HGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVA 106 (170)
Q Consensus 27 ~~~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~ 106 (170)
...+|++.+++.|......+.|++++|..|..++.++.+|||++.++.++.+ +..+++|...+++.+|.|+++|.|.+.
T Consensus 216 ~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~-~~fkkKt~~~K~t~~p~fd~~~~~~i~ 294 (362)
T KOG1013|consen 216 DEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVG-KKFKKKTQQKKKTLNPEFDEEFFYDIG 294 (362)
T ss_pred hhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcc-hhhcccCcchhccCCccccccccccCC
Confidence 4678999999999999999999999999999999999999999999987544 566889999999999999999999999
Q ss_pred cCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccccc
Q psy6698 107 LFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILCG 168 (170)
Q Consensus 107 ~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l~~ 168 (170)
+.+|....+.|++|+++..+..+++|-....+...+. -..+|......++....+||-|.-
T Consensus 295 pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr~~-v~~h~gr~~~~~~a~~~~ss~l~~ 355 (362)
T KOG1013|consen 295 PGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRRGE-VHKHWGRCLFDQDANFERSSGLET 355 (362)
T ss_pred ccchhcceEEEeecccCCCcCccCCCcccccccccch-hhcCcccccccccccccccccccc
Confidence 9999989999999999998889999998888888886 888999999999999999998853
No 91
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.62 E-value=7.1e-15 Score=96.25 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=75.6
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeec---CCccceEEEEEEEeCC
Q psy6698 47 FIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVAL---FHLSDVTLVVSVYDRK 123 (170)
Q Consensus 47 ~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~---~~l~~~~l~i~v~~~~ 123 (170)
.+..++|++|+..+..+.+|||+++++..+.+.....++|++++++.+|.|+ +|.|.+.. .++ ...|.|.|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~-~~~l~~~V~d~d 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDY-DRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCc-CCEEEEEEEEeC
Confidence 3456789999999988999999999987643334457899999999999999 67666431 111 368999999999
Q ss_pred CCCCcceeEEEEEcCCCCC
Q psy6698 124 SLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~ 142 (170)
..+++++||++.++++.+.
T Consensus 81 ~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 81 SSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCCcEEEEEEEEHHHHh
Confidence 9999999999999988764
No 92
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=1.5e-14 Score=97.17 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=80.9
Q ss_pred eEEEEEEEeecCCCCC--CCC--CCCcEEEEEEEeCCCCccceeeecceeCCCC--CeeeeeEEEEeec-----------
Q psy6698 45 RIFIEVIKGSHFRNVA--MTR--APDTYVKLMLLSSSGQEMSRAKTSVRRGQPN--PLFKETFVFQVAL----------- 107 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~--~~~--~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~--p~~~e~~~f~~~~----------- 107 (170)
.|+|.|.+|++++... ..| .+||||+..+.+. ...+++|.++.++.+ |.||++|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~ 77 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIK 77 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEe
Confidence 4789999999966433 345 4899999999763 456899999999999 9999999999776
Q ss_pred ----------CCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 108 ----------FHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 108 ----------~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
+.+....|.+.|||.|.++++++||.+.+++..+..
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 556668999999999999999999999999986653
No 93
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.59 E-value=2.4e-14 Score=88.89 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=74.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|+|+|++|++|+..+..+..+||+++.+... . ...++|++..++.+|.|+++|.|.+...+.. .|.|.||+++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~-~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGS-E--STKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETT-T--CEEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeeccee-e--eeeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCC
Confidence 6899999999999887888999999999653 2 1568999999999999999999997777765 499999999998
Q ss_pred CCcceeEEEE
Q psy6698 126 KKKQLIGWFS 135 (170)
Q Consensus 126 ~~~~~iG~~~ 135 (170)
+++++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 8899999974
No 94
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.57 E-value=5.1e-14 Score=94.45 Aligned_cols=106 Identities=24% Similarity=0.339 Sum_probs=82.7
Q ss_pred CeEEEEEEEeecCCCCC--CCCCCCcEEEEEEEeCCCCccceeeecceeCCC-CCeeeeeEEEEeecCCccceEEEEEEE
Q psy6698 44 GRIFIEVIKGSHFRNVA--MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQP-NPLFKETFVFQVALFHLSDVTLVVSVY 120 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~--~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~-~p~~~e~~~f~~~~~~l~~~~l~i~v~ 120 (170)
..|+|+|++|++|+..+ ..+..+||+++++.....+.....+|++..++. +|.|+|+|.|.+...+. ..|.|.||
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~--~~l~~~V~ 79 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPEL--AFLRFVVY 79 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCe--EEEEEEEE
Confidence 36899999999999877 467889999999975322123578888887765 99999999999875442 47899999
Q ss_pred eCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhh
Q psy6698 121 DRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCK 154 (170)
Q Consensus 121 ~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~ 154 (170)
+++.. ++++||++.++++.+.. + ..|+.|..
T Consensus 80 d~~~~-~~~~iG~~~~~l~~l~~-g-~~~~~l~~ 110 (128)
T cd00275 80 DEDSG-DDDFLGQACLPLDSLRQ-G-YRHVPLLD 110 (128)
T ss_pred eCCCC-CCcEeEEEEEEhHHhcC-c-eEEEEecC
Confidence 99987 89999999999997754 2 23455543
No 95
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.57 E-value=4.6e-15 Score=101.24 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=81.5
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
+.|.|.|++|++|+.++ +||+.+.+. + ....+|+++.++.+|.|+|+|.|...... ..+.|.||..+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld---~--~~vaRT~v~~~~~nP~W~E~F~f~~~~~~---~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLD---K--TLYARTTSKLKTDTLFWGEHFEFSNLPPV---SVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEEC---C--EEEEEEEEEcCCCCCcceeeEEecCCCcc---cEEEEEEEEcc
Confidence 45899999999998764 799999983 3 24679999999999999999999754432 47899998754
Q ss_pred C-CC---CcceeEEEEEcCCCCCh-HHHHHHHHHhhcCCCe
Q psy6698 124 S-LK---KKQLIGWFSLGQNSTSE-EELAHWNEMCKVKGEQ 159 (170)
Q Consensus 124 ~-~~---~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~~~~~ 159 (170)
. .+ ++++||.+.|++..+.. ...+.||+++...+.+
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 3 22 57899999999986543 3678999998877665
No 96
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=5.6e-14 Score=94.12 Aligned_cols=89 Identities=28% Similarity=0.390 Sum_probs=74.1
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
.+|.|+|.+|+ |...+..+.+|||+++++. ++ ...+|++.+++.+|.|+|+|.|.+... ..|.|.|||++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~---~~--~~~kT~v~~~t~~P~Wne~f~~~~~~~----~~l~~~V~d~~ 71 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD---GQ--PPKKTEVSKKTSNPKWNEHFTVLVTPQ----STLEFKVWSHH 71 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC---Cc--ccEEeeeeCCCCCCccccEEEEEeCCC----CEEEEEEEeCC
Confidence 46899999998 5555557789999999983 22 467899999999999999999987543 48999999999
Q ss_pred CCCCcceeEEEEEcCCCCC
Q psy6698 124 SLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~~~ 142 (170)
..+++++||++.++++++.
T Consensus 72 ~~~~~~~iG~~~i~l~~l~ 90 (125)
T cd04021 72 TLKADVLLGEASLDLSDIL 90 (125)
T ss_pred CCCCCcEEEEEEEEHHHhH
Confidence 9889999999999987653
No 97
>KOG1011|consensus
Probab=99.56 E-value=1.1e-14 Score=117.15 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=131.8
Q ss_pred CcccCCCcceeceecccCCCCCCcCCCCCccEEEEEEEEeCCCC----eEEEEEEEeecCCCCCCCCCCCcEEEEEEE-e
Q psy6698 1 MELSTGSSEILSLGRSDSTDSTHSMLHGGVAELLLGLSYNGTTG----RIFIEVIKGSHFRNVAMTRAPDTYVKLMLL-S 75 (170)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~l~~~~~~~----~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~-~ 75 (170)
+||+||+++.+...|..++...++-.+++.|++.+.++++...| .++|.|+.|.+|.- +..|...||+.+.+. |
T Consensus 1078 lslytqttd~liktfv~sq~~q~~gvedpvgevsvqvdlfthpgtgehkvtvkvvaandlkw-qtsgmFrPFVEV~ivGP 1156 (1283)
T KOG1011|consen 1078 LSLYTQTTDQLIKTFVTSQRQQGPGVEDPVGEVSVQVDLFTHPGTGEHKVTVKVVAANDLKW-QTSGMFRPFVEVHIVGP 1156 (1283)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCCCCCCceEEEEEEeecCCCCCcceEEEEEEecccccc-hhccccccceEEEEecC
Confidence 47899999999999999999999999999999999999987544 49999999999875 457888999999887 4
Q ss_pred CCCCccceeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhh
Q psy6698 76 SSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCK 154 (170)
Q Consensus 76 ~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~ 154 (170)
.-+.+..++.|+...++..|.|||+|.|-+.++.-+ -+.|.++|.|+.-.+.|.++|...++|.+...
T Consensus 1157 ~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~----------- 1225 (1283)
T KOG1011|consen 1157 HLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVAD----------- 1225 (1283)
T ss_pred cccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhh-----------
Confidence 445566788999999999999999999998876543 36789999888877888999999999987765
Q ss_pred cCCCeeeeccccccCC
Q psy6698 155 VKGEQLARWHILCGDV 170 (170)
Q Consensus 155 ~~~~~~~~w~~l~~~~ 170 (170)
+..++.|.+|++.|
T Consensus 1226 --kGS~a~W~pLgrri 1239 (1283)
T KOG1011|consen 1226 --KGSCACWVPLGRRI 1239 (1283)
T ss_pred --cCceeEeeeccccc
Confidence 56688888887764
No 98
>KOG0905|consensus
Probab=99.51 E-value=3.2e-14 Score=120.16 Aligned_cols=122 Identities=26% Similarity=0.365 Sum_probs=106.3
Q ss_pred CccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEE-eec
Q psy6698 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQ-VAL 107 (170)
Q Consensus 29 ~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~-~~~ 107 (170)
.-|+|.+++.| .+++|+|.|..+++|+-...+..+||||+.|+.|+ .++..+.+|+++++|.+|.|||...+. ++.
T Consensus 1511 iggqV~LsIsY--~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPd-p~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1511 IGGQVKLSISY--NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPD-PRKTSKRKTKVVRKTRNPTFNEMLVYDGFPK 1587 (1639)
T ss_pred cCceEEEEEEE--cCceEEEEhhhhcccccccCCCCCCcceeEEecCC-chHhhhhhhccccccCCCchhhheeecCCch
Confidence 45699999999 59999999999999987777888999999999996 446678899999999999999999998 778
Q ss_pred CCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh-HHHHHHHHHh
Q psy6698 108 FHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE-EELAHWNEMC 153 (170)
Q Consensus 108 ~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~ 153 (170)
+.+.++.|.++||..+....+.++|.+.|+|..... ++...||.|-
T Consensus 1588 ~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1588 EILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred hhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 777778999999999998899999999999997765 2555777663
No 99
>PLN03008 Phospholipase D delta
Probab=99.44 E-value=4.8e-13 Score=111.43 Aligned_cols=91 Identities=22% Similarity=0.336 Sum_probs=73.3
Q ss_pred CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCC
Q psy6698 63 RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 63 ~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~ 142 (170)
+.+||||++.+. + .+..+|++++++.||+|||+|.|.+.... ..|.|.|||++.++ +++||++.|++..+.
T Consensus 75 ~tSDPYV~I~Lg---~--~rv~RTrVi~n~~NPvWNE~F~f~vah~~---s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~ 145 (868)
T PLN03008 75 ITSDPYVTVVVP---Q--ATLARTRVLKNSQEPLWDEKFNISIAHPF---AYLEFQVKDDDVFG-AQIIGTAKIPVRDIA 145 (868)
T ss_pred CCCCceEEEEEC---C--cceeeEEeCCCCCCCCcceeEEEEecCCC---ceEEEEEEcCCccC-CceeEEEEEEHHHcC
Confidence 356999999992 2 24669999999999999999999987633 58999999999987 589999999999765
Q ss_pred h-HHHHHHHHHhhcCCCeeee
Q psy6698 143 E-EELAHWNEMCKVKGEQLAR 162 (170)
Q Consensus 143 ~-~~~~~W~~l~~~~~~~~~~ 162 (170)
. +..+.|++|+...+++++.
T Consensus 146 ~Ge~vd~Wl~Ll~~~~kp~k~ 166 (868)
T PLN03008 146 SGERISGWFPVLGASGKPPKA 166 (868)
T ss_pred CCCceEEEEEccccCCCCCCC
Confidence 4 2556888888777666654
No 100
>KOG1011|consensus
Probab=99.44 E-value=1.2e-13 Score=111.26 Aligned_cols=106 Identities=19% Similarity=0.299 Sum_probs=92.0
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
..++++|++|.+|..++..|.+||||.+.+.. .+.+|+++...+||+|||.|.|.+.+.. ..+++.|||.|
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~k------tkrrtrti~~~lnpvw~ekfhfechnst---drikvrvwded 365 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK------TKRRTRTIHQELNPVWNEKFHFECHNST---DRIKVRVWDED 365 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecc------cchhhHhhhhccchhhhhheeeeecCCC---ceeEEEEecCc
Confidence 45789999999999999999999999988732 3678899999999999999999988765 58999999976
Q ss_pred CC-----------CCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCe
Q psy6698 124 SL-----------KKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQ 159 (170)
Q Consensus 124 ~~-----------~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~ 159 (170)
+. ..|+|+|+..|.+..++. +.+.||.|..+.++.
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsg-emdvwynlekrtdks 411 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSG-EMDVWYNLEKRTDKS 411 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEeccc-chhhhcchhhccchh
Confidence 43 367899999999999887 899999999887764
No 101
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.40 E-value=4.7e-13 Score=87.79 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=69.1
Q ss_pred CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCC
Q psy6698 62 TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNST 141 (170)
Q Consensus 62 ~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~ 141 (170)
.|.+|||+.+++. ++ ...+|++++++.+|.|||.|.|.+... ....|.|.||+++.+ ++++||.+.++|.++
T Consensus 10 ~G~~dPYv~v~v~---~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 10 TGLLSPYAELYLN---GK--LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred CCCCCceEEEEEC---CE--EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 5778999999983 21 357888888999999999999987643 235799999999988 899999999999865
Q ss_pred Ch--HHHHHHHHHhhcCC
Q psy6698 142 SE--EELAHWNEMCKVKG 157 (170)
Q Consensus 142 ~~--~~~~~W~~l~~~~~ 157 (170)
.. .....|+.|...+.
T Consensus 82 ~~~~~~~~~w~~L~~~~~ 99 (111)
T cd04052 82 IDATSVGQQWFPLSGNGQ 99 (111)
T ss_pred HhhhhccceeEECCCCCC
Confidence 32 23468988874333
No 102
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.36 E-value=1.8e-12 Score=79.30 Aligned_cols=101 Identities=31% Similarity=0.443 Sum_probs=82.3
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 47 FIEVIKGSHFRNVAMTR-APDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 47 ~v~i~~a~~L~~~~~~~-~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
-++++.|++|.-....| .+..|++--+.-+ +....+|+..+.+.||+|.|+|.|.+...++....|.|+|++ ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~---kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~ 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP---KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QT 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC---CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cC
Confidence 47889999997665543 3345777544321 235789999999999999999999999999998999999998 45
Q ss_pred CCcceeEEEEEcCCCCChHHHHHHHHH
Q psy6698 126 KKKQLIGWFSLGQNSTSEEELAHWNEM 152 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~~~~~~W~~l 152 (170)
.+.+.||.+.+++++++.++.+||.++
T Consensus 77 ~RKe~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred CccceeeEEEeecccCCHHHhhhhhcC
Confidence 778999999999999999899999753
No 103
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.36 E-value=1.2e-11 Score=78.58 Aligned_cols=93 Identities=24% Similarity=0.382 Sum_probs=77.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
+.|.|++++++......+..+||+++++... + ....+|+...++.+|.|+++|.|.+.... ...|.|.||+....
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~-~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGD-P--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRF 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCC-c--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCc
Confidence 6789999999988776667899999999653 1 34688888999999999999999987654 36899999998877
Q ss_pred CCcceeEEEEEcCCCCCh
Q psy6698 126 KKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~~ 143 (170)
+.+.++|.+.+++..+..
T Consensus 77 ~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred cCCceeEEEEEEHHHccc
Confidence 778999999999776543
No 104
>KOG1328|consensus
Probab=99.36 E-value=5.6e-13 Score=108.43 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=100.9
Q ss_pred CCCCCccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCC--ccceeeecceeCCCCCeeeeeEE
Q psy6698 25 MLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQ--EMSRAKTSVRRGQPNPLFKETFV 102 (170)
Q Consensus 25 ~~~~~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~--~~~~~~t~~~~~t~~p~~~e~~~ 102 (170)
++....|.+.+.+.|+.+...|.|.|+.|+++.+.+.+|.+||||.+.+.|. .. -...++|.++..|+||+|+|+|.
T Consensus 928 la~~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~-~~fp~v~~q~T~V~~rtLnPVfDE~Fe 1006 (1103)
T KOG1328|consen 928 LADHQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPK-FRFPAVPVQKTKVVSRTLNPVFDETFE 1006 (1103)
T ss_pred HhhCcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccc-cccccchhhhhhhhhccccchhhhhee
Confidence 3455678999999999999999999999999999999999999999999873 21 24468999999999999999999
Q ss_pred EEeecCCcc--ceEEEEEEEeCCCCCCcceeEEEEEcCCCC
Q psy6698 103 FQVALFHLS--DVTLVVSVYDRKSLKKKQLIGWFSLGQNST 141 (170)
Q Consensus 103 f~~~~~~l~--~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~ 141 (170)
|.++.+.-. ...+.|.|+|+|.++.++|-|++.+.|+..
T Consensus 1007 FsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1007 FSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred eecCccccccccceEEEEeeccceecccccchHHHHhhCCC
Confidence 998875432 357899999999999999999999998754
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.34 E-value=2.4e-12 Score=115.79 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEe
Q psy6698 42 TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYD 121 (170)
Q Consensus 42 ~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~ 121 (170)
-.|.|.|+|++|.||. +..+.+|||+++.+..+ .+.+|++++++.||.|||.|.|.+..... +..+.|.|||
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~-----~~~kTkvvk~~~nP~Wne~f~~~~~~p~~-~~~l~iev~d 2049 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG-----PPRQTKVVSHSSSPEWKEGFTWAFDSPPK-GQKLHISCKS 2049 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCC-----CcccccccCCCCCCCcccceeeeecCCCC-CCceEEEEEe
Confidence 4788999999999998 45788999999999532 36699999999999999999976554332 2479999999
Q ss_pred CCCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhh
Q psy6698 122 RKSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCK 154 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~ 154 (170)
+|.+++ +.+|.+.|++...-. ..+..||+|..
T Consensus 2050 ~d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2050 KNTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred cCccCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence 999865 599999999986542 26678999985
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.33 E-value=2e-11 Score=77.23 Aligned_cols=90 Identities=27% Similarity=0.390 Sum_probs=75.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~ 125 (170)
|.|.|++|+++........++||+.+.+.. ....+|.....+.+|.|++.|.|.+... ....+.|.||+.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCC
Confidence 468999999998876677899999999854 2467888999999999999999998763 235899999999887
Q ss_pred CCcceeEEEEEcCCCCC
Q psy6698 126 KKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 126 ~~~~~iG~~~i~l~~~~ 142 (170)
..+.++|.+.+++..+.
T Consensus 74 ~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 74 SKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCceeEEEEEeHHHhh
Confidence 77899999999987655
No 107
>PLN02223 phosphoinositide phospholipase C
Probab=99.26 E-value=4.7e-11 Score=95.90 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=82.0
Q ss_pred CeEEEEEEEeecCCCC-----CCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEE
Q psy6698 44 GRIFIEVIKGSHFRNV-----AMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVS 118 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~-----~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~ 118 (170)
..|.|.|+.+.+++.. +....+||||++.+..-... ...++|.+..++.+|.|||+|.|.+...++. .|.|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D-~~~~kT~v~nNg~nPvWne~F~F~i~~PELA--lLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHD-EKIMKTTVKNNEWKPTWGEEFTFPLTYPDLA--LISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCC-cceeEEEeCCCCcCceecceeEEEEEccCce--EEEEE
Confidence 4689999999987521 12345789999999631121 2345677888899999999999999887765 89999
Q ss_pred EEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCC
Q psy6698 119 VYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGE 158 (170)
Q Consensus 119 v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~ 158 (170)
|+++|....++|+|+..+|+.++.+ ++. +..|....++
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~-GyR-~VpL~~~~g~ 523 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIE-GIR-AVPLYDERGK 523 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcC-Cce-eEeccCCCcC
Confidence 9999988889999999999998775 442 2344443333
No 108
>KOG2059|consensus
Probab=99.22 E-value=9.7e-12 Score=100.94 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=92.4
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeC
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
...|.|.|.+|+||+..+..|..|||+.+.+.. ....+|.++.+++.|-|.|+|.|+++..- +.|.|.|||.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~-----E~v~RT~tv~ksL~PF~gEe~~~~iP~~F---~~l~fYv~D~ 75 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-----EEVCRTATVEKSLCPFFGEEFYFEIPRTF---RYLSFYVWDR 75 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecc-----hhhhhhhhhhhhcCCccccceEEecCcce---eeEEEEEecc
Confidence 456899999999999999999999999999854 26889999999999999999999998765 6899999999
Q ss_pred CCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhh-cCCCee
Q psy6698 123 KSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCK-VKGEQL 160 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~-~~~~~~ 160 (170)
| +++|+.||.+.|.-.++.. .+.++|+.|.+ +|+..+
T Consensus 76 d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEV 114 (800)
T KOG2059|consen 76 D-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEV 114 (800)
T ss_pred c-cccccccceeeeeHHHHhhCCCCccceeccccCCChhh
Confidence 9 8999999999998665532 27789998866 355444
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.18 E-value=9.1e-11 Score=99.95 Aligned_cols=114 Identities=25% Similarity=0.307 Sum_probs=95.6
Q ss_pred cEEEEEEEEeCC------------CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeee
Q psy6698 31 AELLLGLSYNGT------------TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFK 98 (170)
Q Consensus 31 G~l~~~l~~~~~------------~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~ 98 (170)
..+.+.+.|.+. .+.|+|.+..+.||+..+.+|..|||+.+.+. ++ +.++|++++++.||+||
T Consensus 1015 ~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln---~k--~vyktkv~KktlNPvwN 1089 (1227)
T COG5038 1015 AKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN---EK--SVYKTKVVKKTLNPVWN 1089 (1227)
T ss_pred ceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEec---ce--ecccccchhccCCCCcc
Confidence 456666666553 78899999999999999999999999999983 32 48999999999999999
Q ss_pred eeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHH
Q psy6698 99 ETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151 (170)
Q Consensus 99 e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~ 151 (170)
|++..++..... ..+.+.++|++...+++.||.+.++|..+.+.+...|.-
T Consensus 1090 Ee~~i~v~~r~~--D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i 1140 (1227)
T COG5038 1090 EEFTIEVLNRVK--DVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNI 1140 (1227)
T ss_pred ccceEeeecccc--ceEEEEEeecccCCCccccccccccHhhcCcCCccceee
Confidence 999999887653 488899999999999999999999999887644555543
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=99.16 E-value=2.2e-10 Score=93.69 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCeEEEEEEEeecCCCCCC------CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAM------TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLV 116 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~------~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~ 116 (170)
...|.|.|+.+.+++.... ....||||++.+..-.. -..+++|+++.++.+|.|+|+|.|.+...++. .+.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~-D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELA--llr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPA-DNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCC-CCcceeeeeccCCCCcccCCeeEEEEEcCCcc--EEE
Confidence 3568999999988753211 13358999998863112 12466899999999999999999998887764 889
Q ss_pred EEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCe
Q psy6698 117 VSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQ 159 (170)
Q Consensus 117 i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~ 159 (170)
|.||++|..+.++|+|+..+++..+.. ++. |.+|....+++
T Consensus 546 f~V~D~D~~~~ddfiGq~~lPv~~Lr~-GyR-~VpL~~~~G~~ 586 (599)
T PLN02952 546 IEVREYDMSEKDDFGGQTCLPVSELRP-GIR-SVPLHDKKGEK 586 (599)
T ss_pred EEEEecCCCCCCCeEEEEEcchhHhcC-Cce-eEeCcCCCCCC
Confidence 999999988889999999999999886 553 66665544443
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.16 E-value=2.8e-10 Score=92.94 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCeEEEEEEEeecCCCC------CCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEE
Q psy6698 43 TGRIFIEVIKGSHFRNV------AMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLV 116 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~------~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~ 116 (170)
...|.|.|+.+.+++.. +.....||||++.+..-.... ..++|++..++.+|.|+|+|.|.+...++. .|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~-~~~kT~v~~n~~nP~Wneef~F~l~vPELA--llR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDE-VMEKTKIEYDTWTPIWNKEFIFPLAVPELA--LLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCC-cccceeccCCCCCCccCCeeEEEEEcCcee--EEE
Confidence 35689999999876421 112346999999997421212 346788888999999999999998887775 899
Q ss_pred EEEEeCCCCCCcceeEEEEEcCCCCChHHHH
Q psy6698 117 VSVYDRKSLKKKQLIGWFSLGQNSTSEEELA 147 (170)
Q Consensus 117 i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~ 147 (170)
|.|++++...+++|+|+..+|+..+.+ ++.
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~-GyR 574 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQ-GIH 574 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhC-ccc
Confidence 999999988889999999999998876 554
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.08 E-value=1.3e-09 Score=89.04 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=77.5
Q ss_pred CeEEEEEEEeecCC--CCC----CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEE
Q psy6698 44 GRIFIEVIKGSHFR--NVA----MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVV 117 (170)
Q Consensus 44 ~~L~v~i~~a~~L~--~~~----~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i 117 (170)
..|.|.|+.+.+++ ... .....||||++.+..-... ..+++|+++.++.+|.|+|+|.|.+...++. .|.|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D-~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLA--llRf 528 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGD-TVMKKTKTLEDNWIPAWDEVFEFPLTVPELA--LLRL 528 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCC-cceeeeEecCCCCCcccCCeeEEEEEcCcee--EEEE
Confidence 46889999987643 211 1235689999999632121 2456899999889999999999998887765 8999
Q ss_pred EEEeCCCCCCcceeEEEEEcCCCCChHHHH
Q psy6698 118 SVYDRKSLKKKQLIGWFSLGQNSTSEEELA 147 (170)
Q Consensus 118 ~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~ 147 (170)
.|+++|....++|+|+..+|+..+.. ++.
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~-GyR 557 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQ-GIR 557 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhC-ccc
Confidence 99999988889999999999998876 544
No 113
>KOG0169|consensus
Probab=99.04 E-value=6.3e-10 Score=91.51 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=79.6
Q ss_pred eEEEEEEEeecCCCCCCC----CCCCcEEEEEEEeCCCCccceeeec-ceeCCCCCeeeeeEEEEeecCCccceEEEEEE
Q psy6698 45 RIFIEVIKGSHFRNVAMT----RAPDTYVKLMLLSSSGQEMSRAKTS-VRRGQPNPLFKETFVFQVALFHLSDVTLVVSV 119 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~----~~~~p~v~~~l~~~~~~~~~~~~t~-~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v 119 (170)
.|.|.|+.+.+.++.... ...+|||.+.+..-... ...++|+ +..++.+|.|+|+|.|.+.-.++. -|.|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D-~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELA--liRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPAD-CAEQKTKVVKNNGFNPIWDEEFEFQLSVPELA--LIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccc-hhhhhceeeccCCcCcccCCeEEEEEecccee--EEEEEE
Confidence 599999999966654332 34689888887531122 2456777 777899999999999999998876 899999
Q ss_pred EeCCCCCCcceeEEEEEcCCCCChHHHHH
Q psy6698 120 YDRKSLKKKQLIGWFSLGQNSTSEEELAH 148 (170)
Q Consensus 120 ~~~~~~~~~~~iG~~~i~l~~~~~~~~~~ 148 (170)
+|++..++|+|+|+..+|+..+.+ ++.+
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~-GyRh 721 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQ-GYRH 721 (746)
T ss_pred EecCCCCcccccceeeccHHHhhC-ceee
Confidence 999999999999999999998876 5554
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=99.01 E-value=2.9e-09 Score=86.71 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=77.8
Q ss_pred CeEEEEEEEeecCCC---CC---CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCee-eeeEEEEeecCCccceEEE
Q psy6698 44 GRIFIEVIKGSHFRN---VA---MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLF-KETFVFQVALFHLSDVTLV 116 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~---~~---~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~-~e~~~f~~~~~~l~~~~l~ 116 (170)
..|.|.|+.+.+|+. .. .....||||++.+..-... ...++|++.+++.+|.| +|+|.|.+...++. .|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D-~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA--~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRD-TVSYRTETAVDQWFPIWGNDEFLFQLRVPELA--LLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCC-CCcceeeccCCCCCceECCCeEEEEEEcCcee--EEE
Confidence 468999999988632 11 1234789999998642121 24568888888899999 99999998887765 899
Q ss_pred EEEEeCCCCCCcceeEEEEEcCCCCChHHHH
Q psy6698 117 VSVYDRKSLKKKQLIGWFSLGQNSTSEEELA 147 (170)
Q Consensus 117 i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~ 147 (170)
|.|+|++..+.++|+|+..++++.+.. ++.
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr~-GYR 537 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELKS-GVR 537 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhhC-Cee
Confidence 999999988889999999999998765 444
No 115
>KOG1328|consensus
Probab=98.91 E-value=2.2e-10 Score=93.72 Aligned_cols=114 Identities=12% Similarity=0.289 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCC-------------------------ccceeeecceeCCCCCeeeee
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQ-------------------------EMSRAKTSVRRGQPNPLFKET 100 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~-------------------------~~~~~~t~~~~~t~~p~~~e~ 100 (170)
+.|.+.+|++|..++.+|.++||.++.+.+...+ -...+-|++++.|++|.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 5677888999999999999999999877652110 112456788999999999999
Q ss_pred EEEEeecCCccceEEEEEEEeCCCC---------------------------------C---CcceeEEEEEcCCCCChH
Q psy6698 101 FVFQVALFHLSDVTLVVSVYDRKSL---------------------------------K---KKQLIGWFSLGQNSTSEE 144 (170)
Q Consensus 101 ~~f~~~~~~l~~~~l~i~v~~~~~~---------------------------------~---~~~~iG~~~i~l~~~~~~ 144 (170)
|.|.+. ++....+.+-+||+|.- + .|+|+|++.|++.+..+.
T Consensus 196 F~F~Ie--Dv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~ 273 (1103)
T KOG1328|consen 196 FQFTIE--DVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD 273 (1103)
T ss_pred eeeehh--ccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc
Confidence 999764 33445788999998642 1 278999999999999888
Q ss_pred HHHHHHHHhhcCCCeee
Q psy6698 145 ELAHWNEMCKVKGEQLA 161 (170)
Q Consensus 145 ~~~~W~~l~~~~~~~~~ 161 (170)
+.++|++|+++.++...
T Consensus 274 Gld~WFkLepRS~~S~V 290 (1103)
T KOG1328|consen 274 GLDQWFKLEPRSDKSKV 290 (1103)
T ss_pred hHHHHhccCcccccccc
Confidence 99999999998777543
No 116
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.90 E-value=7.2e-09 Score=66.16 Aligned_cols=85 Identities=24% Similarity=0.390 Sum_probs=65.2
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeC
Q psy6698 46 IFIEVIKGSHFRNVA---MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 46 L~v~i~~a~~L~~~~---~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
|.|+|..++++.-.. ..+.++|||.+++.. ..+.+|+. +.||.|||+|.|++-+ ...+.+.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-----EEEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeC
Confidence 578999999997665 467789999999843 13566655 5899999999999843 24899999998
Q ss_pred CCCCCcceeEEEEEcCCCCCh
Q psy6698 123 KSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~~~ 143 (170)
.. ...-.||...+.+.++-.
T Consensus 69 ~~-~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 69 GG-DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CC-CeecceeeehhhHHHHHH
Confidence 64 334689999998886543
No 117
>KOG1013|consensus
Probab=98.90 E-value=1.6e-10 Score=86.75 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=101.6
Q ss_pred cCCCCCccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEE
Q psy6698 24 SMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVF 103 (170)
Q Consensus 24 ~~~~~~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f 103 (170)
+......|.+.+.+.|+.....+.++|.+|++|.+++..+..|||+++.++|..+ +....++++..++.||.|+|+..+
T Consensus 73 ~~~at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~-kl~slr~~t~~n~lN~~w~etev~ 151 (362)
T KOG1013|consen 73 SDPATTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAG-KLNSLRTKTTRNTLNPEWNETEVY 151 (362)
T ss_pred cchhhhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchh-hhhhhhHHhhccCcCcceecccee
Confidence 3334467999999999999999999999999999999999999999999998655 344588999999999999999888
Q ss_pred E-eecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 104 Q-VALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 104 ~-~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
. +.-++.....+.+.|++.+.+.+++++|+..+.+..+.+
T Consensus 152 ~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 152 EGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred cccccchhhhhhhheeeccCcccccccCcccchhhhhccCh
Confidence 7 555555556788999999998999999999988876665
No 118
>PLN02270 phospholipase D alpha
Probab=98.89 E-value=3.3e-09 Score=88.79 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=89.2
Q ss_pred CCCeEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEEeCCCCccceeeecceeCC-CCCeeeeeEE
Q psy6698 42 TTGRIFIEVIKGSHFRNVA------------------MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQ-PNPLFKETFV 102 (170)
Q Consensus 42 ~~~~L~v~i~~a~~L~~~~------------------~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t-~~p~~~e~~~ 102 (170)
-.|.|.|+|.+|++|+..+ ..+.++||+.+.+.. ....+|+++.+. .||.|+|+|.
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~ 80 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFH 80 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceE
Confidence 3688999999999998521 124579999999842 357899999885 5999999998
Q ss_pred EEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh-HHHHHHHHHhhcCCCeeeec
Q psy6698 103 FQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE-EELAHWNEMCKVKGEQLARW 163 (170)
Q Consensus 103 f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~~~~~~~~~~w 163 (170)
..+.-.. ..+.|+|.+.+.++. .+||.+.|++..+-. +.++.|++++...++++..-
T Consensus 81 i~~ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 81 IYCAHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EeeccCc---ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 8877654 589999999888775 699999999886532 36899999988888877653
No 119
>KOG2060|consensus
Probab=98.82 E-value=2.1e-09 Score=82.03 Aligned_cols=118 Identities=19% Similarity=0.351 Sum_probs=92.3
Q ss_pred CccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCC-CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeec
Q psy6698 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMT-RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVAL 107 (170)
Q Consensus 29 ~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~-~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~ 107 (170)
..|+|++.++ ...+.+.|.|++|++|..+... ..+.|||++|+++ ++...-+.+|+...+|.+|.|.....|+-.+
T Consensus 256 ~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~-~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp 332 (405)
T KOG2060|consen 256 NMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLE-NGFCIAKKKTKSARKTLDPLYQQQLSFDQSP 332 (405)
T ss_pred ccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcC-CCceecccccccccccCchhhhhhhhhccCC
Confidence 3466666554 3678999999999999876543 3688999999998 5767778899999999999999988887655
Q ss_pred CCccceEEEEEEEe-CCCCCCcceeEEEEEcCCCCChH--HHHHHHHH
Q psy6698 108 FHLSDVTLVVSVYD-RKSLKKKQLIGWFSLGQNSTSEE--ELAHWNEM 152 (170)
Q Consensus 108 ~~l~~~~l~i~v~~-~~~~~~~~~iG~~~i~l~~~~~~--~~~~W~~l 152 (170)
.. ..|.+.+|. +.++.++.|+|.+.+-+++++.. ....||++
T Consensus 333 ~~---k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKl 377 (405)
T KOG2060|consen 333 PG---KYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKL 377 (405)
T ss_pred Cc---cEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeec
Confidence 43 789999986 77888889999999999887651 23345554
No 120
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=86.37 Aligned_cols=93 Identities=22% Similarity=0.382 Sum_probs=77.6
Q ss_pred CCCeEEEEEEEeecCCCCC--CCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEE
Q psy6698 42 TTGRIFIEVIKGSHFRNVA--MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSV 119 (170)
Q Consensus 42 ~~~~L~v~i~~a~~L~~~~--~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v 119 (170)
..|++.|.|.+|++|...+ ..+..|||+.+.... . ...+|++++++.||+|||++...+..-. ..|.+++
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~---r--~~gkT~v~~nt~nPvwNEt~Yi~lns~~---d~L~Lsl 505 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD---R--VIGKTRVKKNTLNPVWNETFYILLNSFT---DPLNLSL 505 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEecc---c--cCCccceeeccCCccccceEEEEecccC---CceeEEE
Confidence 3578999999999999877 468899999998632 2 3459999999999999999888765322 5899999
Q ss_pred EeCCCCCCcceeEEEEEcCCCCC
Q psy6698 120 YDRKSLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 120 ~~~~~~~~~~~iG~~~i~l~~~~ 142 (170)
||.+..++|.++|.+.++|..+-
T Consensus 506 yD~n~~~sd~vvG~~~l~L~~L~ 528 (1227)
T COG5038 506 YDFNSFKSDKVVGSTQLDLALLH 528 (1227)
T ss_pred EeccccCCcceeeeEEechHHhh
Confidence 99998899999999999988553
No 121
>KOG1264|consensus
Probab=98.74 E-value=8.7e-08 Score=79.74 Aligned_cols=95 Identities=14% Similarity=0.243 Sum_probs=76.8
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeee-eeEEEEeecCCccceEEEEEEEeC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFK-ETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~-e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
..|.|.|+.|+.|+.. ..+..-|||.+.+..-.=...+.++|.+.-+.+||+|| |.|.|.+...+.. .|.|.|++.
T Consensus 1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A--~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFA--FLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceE--EEEEEEecc
Confidence 4688999999999854 34556699999986411113345677778899999999 9999999988765 899999999
Q ss_pred CCCCCcceeEEEEEcCCCC
Q psy6698 123 KSLKKKQLIGWFSLGQNST 141 (170)
Q Consensus 123 ~~~~~~~~iG~~~i~l~~~ 141 (170)
|.++...|||++..|+.++
T Consensus 1142 Dmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred cccCCcceeeeeecchhhh
Confidence 9999889999999998864
No 122
>KOG2059|consensus
Probab=98.73 E-value=9e-09 Score=84.07 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=96.0
Q ss_pred CccEEEEEEEEeC--CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEee
Q psy6698 29 GVAELLLGLSYNG--TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVA 106 (170)
Q Consensus 29 ~~G~l~~~l~~~~--~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~ 106 (170)
..|+|++.+.+.. +...+.+.++.++++-+.. ++.+|||+++....+. .....+|+.++.|.+|.|+|.|.|.+.
T Consensus 114 VQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~--~~~~~~T~~~kkt~~p~~~Ev~~f~~~ 190 (800)
T KOG2059|consen 114 VQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPS--KLKEKKTKVKKKTTNPQFDEVFYFEVT 190 (800)
T ss_pred hceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccc--hhhccccceeeeccCcchhhheeeeec
Confidence 4799998888743 4555777777778776654 4459999999885421 223478999999999999999999877
Q ss_pred cC-------------CccceEEEEEEEe-CCCCCCcceeEEEEEcCCCCC-hHHHHHHHHHhhcCCCe
Q psy6698 107 LF-------------HLSDVTLVVSVYD-RKSLKKKQLIGWFSLGQNSTS-EEELAHWNEMCKVKGEQ 159 (170)
Q Consensus 107 ~~-------------~l~~~~l~i~v~~-~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~l~~~~~~~ 159 (170)
.. +-....|.+.+|+ .+....+.|+|++.+++.... ....+.||.|.+.++..
T Consensus 191 ~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~ 258 (800)
T KOG2059|consen 191 REESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGE 258 (800)
T ss_pred cccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcc
Confidence 54 1123578899999 555566899999999999765 34778899998876653
No 123
>KOG1031|consensus
Probab=98.72 E-value=4.8e-08 Score=78.84 Aligned_cols=115 Identities=21% Similarity=0.349 Sum_probs=92.3
Q ss_pred CCeEEEEEEEeecCCCCCCC-CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeee-eeEEEEeecCCccceEEEEEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAMT-RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFK-ETFVFQVALFHLSDVTLVVSVY 120 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~-~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~-e~~~f~~~~~~l~~~~l~i~v~ 120 (170)
.+.|-|.|..+++||.++.. ...|.||.+++.. ..++|.+..+++||.|| +.|.|.+--.++.+..|.|.+.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n------~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~ll 75 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN------TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLL 75 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc------cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEe
Confidence 36788999999999998865 4568999999854 36899999999999999 6789999988888899999999
Q ss_pred eCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeeeecccc
Q psy6698 121 DRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHIL 166 (170)
Q Consensus 121 ~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~~w~~l 166 (170)
|+|..+.++-||.+.|+++.+-.++..+ .....+..++.|-|+
T Consensus 76 d~dtysandaigkv~i~idpl~~e~aaq---avhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 76 DHDTYSANDAIGKVNIDIDPLCLEEAAQ---AVHGKGTVISGWFPI 118 (1169)
T ss_pred cccccccccccceeeeccChHHHHhHHh---hhcCCceEEeeeeec
Confidence 9999999999999999999765422222 123345566666554
No 124
>KOG1326|consensus
Probab=98.53 E-value=5.9e-08 Score=82.00 Aligned_cols=91 Identities=21% Similarity=0.302 Sum_probs=76.2
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~ 123 (170)
.-+.|++++|-+|.+.+.+|.+|||+++.+. +....-+...+.++++|+|++.|.+.+.... ...+.+.||++|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG----k~~~~d~~~yip~tlnPVfgkmfel~~~lp~--ek~l~v~vyd~D 686 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLG----KKRTLDRAHYIPNTLNPVFGKMFELECLLPF--EKDLIVEVYDHD 686 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeec----cchhhhhhhcCcCCCCcHHHHHHHhhcccch--hhcceeEEEEee
Confidence 4477999999999999999999999999883 2333457788999999999998877654432 358899999999
Q ss_pred CCCCcceeEEEEEcCCC
Q psy6698 124 SLKKKQLIGWFSLGQNS 140 (170)
Q Consensus 124 ~~~~~~~iG~~~i~l~~ 140 (170)
..+.++.||+..+++.+
T Consensus 687 ~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 687 LEAQDEKIGETTIDLEN 703 (1105)
T ss_pred cccccchhhceehhhhh
Confidence 99999999999999874
No 125
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.24 E-value=2.7e-06 Score=56.25 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=60.0
Q ss_pred CCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeec-------------CCccceEEEEEEEeCCCC------
Q psy6698 65 PDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVAL-------------FHLSDVTLVVSVYDRKSL------ 125 (170)
Q Consensus 65 ~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~-------------~~l~~~~l~i~v~~~~~~------ 125 (170)
-++|+++.+..-+ ..+..+|+++-++..|.|+-++.|.++. +-++...+.++||+....
T Consensus 33 VN~yv~i~lSFl~--~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~ 110 (143)
T cd08683 33 VNSYVTIHLSFLP--EKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTI 110 (143)
T ss_pred cceEEEEEeccCC--CCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCcccccee
Confidence 4789998865311 2367899999999999999999998761 223446889999996422
Q ss_pred ----CCcceeEEEEEcCCCCCh--HHHHHHHH
Q psy6698 126 ----KKKQLIGWFSLGQNSTSE--EELAHWNE 151 (170)
Q Consensus 126 ----~~~~~iG~~~i~l~~~~~--~~~~~W~~ 151 (170)
.+|-.+|.+.||+..+-. .+..+||+
T Consensus 111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~p 142 (143)
T cd08683 111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYP 142 (143)
T ss_pred ccCcCCcEEEEEEEeeHHHHhhcccCcccccc
Confidence 245589999999876532 24445543
No 126
>KOG1327|consensus
Probab=98.13 E-value=1.6e-05 Score=64.16 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=90.0
Q ss_pred CCCCccEEEEEEEEeCCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEE-
Q psy6698 26 LHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQ- 104 (170)
Q Consensus 26 ~~~~~G~l~~~l~~~~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~- 104 (170)
.....|.|.+.+.-............+|++|.+++..+.++||..++-..+.+.....++|.+.+++.+|.|.+...-.
T Consensus 118 ~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~ 197 (529)
T KOG1327|consen 118 KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQ 197 (529)
T ss_pred ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchh
Confidence 3447889999998766666677777889999999999999999998877555666778999999999999999642211
Q ss_pred -eecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCC
Q psy6698 105 -VALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNST 141 (170)
Q Consensus 105 -~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~ 141 (170)
+...+ .+..+++.+|+++..+++++||.+...+..+
T Consensus 198 ~l~~~~-~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 198 SLCSKD-GNRPIQIECYDYDSNGKHDLIGKFQTTLSEL 234 (529)
T ss_pred hhcccC-CCCceEEEEeccCCCCCcCceeEecccHHHh
Confidence 11112 2468899999999888899999999776654
No 127
>PLN02352 phospholipase D epsilon
Probab=98.01 E-value=7.6e-06 Score=68.84 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=72.0
Q ss_pred CCeEEEEEEEeecCCCC----CCC-CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEE
Q psy6698 43 TGRIFIEVIKGSHFRNV----AMT-RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVV 117 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~----~~~-~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i 117 (170)
.|.|.++|.+|+-+... ... ...+||+.+.+.. ....+| .+..||.|+|+|...+.-.. +..+.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----~~v~rt---~~~~~p~w~e~f~i~~ah~~--~~~~~f 78 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-----KKVAKT---SHEYDRVWNQTFQILCAHPL--DSTITI 78 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-----cEEecC---CCCCCCccccceeEEeeeec--CCcEEE
Confidence 46677777777633221 111 1238999999832 245566 55669999999988876543 236889
Q ss_pred EEEeCCCCCCcceeEEEEEcCCCCCh--HHHHHHHHHhhcCCCeeee
Q psy6698 118 SVYDRKSLKKKQLIGWFSLGQNSTSE--EELAHWNEMCKVKGEQLAR 162 (170)
Q Consensus 118 ~v~~~~~~~~~~~iG~~~i~l~~~~~--~~~~~W~~l~~~~~~~~~~ 162 (170)
.|.+ .-.+||.+.|++..+-. ..++.|++++...++++..
T Consensus 79 ~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~ 120 (758)
T PLN02352 79 TLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE 120 (758)
T ss_pred EEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC
Confidence 9876 25899999999886532 2388999999888887754
No 128
>PLN02964 phosphatidylserine decarboxylase
Probab=97.89 E-value=6.4e-05 Score=62.75 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=75.2
Q ss_pred CCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEE
Q psy6698 41 GTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVY 120 (170)
Q Consensus 41 ~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~ 120 (170)
.=.|...++++.|+ ....|+|..+... |. +.++|...++|.+|+||+...|.+...++. ...++||
T Consensus 51 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---g~--~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~ 116 (644)
T PLN02964 51 DFSGIALLTLVGAE-------MKFKDKWLACVSF---GE--QTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVF 116 (644)
T ss_pred cccCeEEEEeehhh-------hccCCcEEEEEEe---cc--eeeeeccccccCCcccchhhceEeccCCcc--eEEEEEE
Confidence 34677888888886 1235887765442 22 589999999999999999999998887754 5699999
Q ss_pred eCCCCCCcceeEEEEEcCCCCChHHHHHHHH
Q psy6698 121 DRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151 (170)
Q Consensus 121 ~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~ 151 (170)
+.+.+++++.+|.+.+++.....++...+.+
T Consensus 117 ~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 117 ETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred ecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 9999999999999999887766545555444
No 129
>KOG1326|consensus
Probab=97.51 E-value=2e-05 Score=67.21 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=75.3
Q ss_pred EEEEEeC-CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEE-eec-CCc-
Q psy6698 35 LGLSYNG-TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQ-VAL-FHL- 110 (170)
Q Consensus 35 ~~l~~~~-~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~-~~~-~~l- 110 (170)
+++.|.- ....++++|.+|+.|...+..+.+|||+.+.... ..+.|.++..|++|.|+.+..|. +.. .+.
T Consensus 196 ~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~------qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~ 269 (1105)
T KOG1326|consen 196 FSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG------QSKETEVVPGTLNPTWDQTIIFDEVEIYGEAH 269 (1105)
T ss_pred eEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc------ccceeEeecCcCCCCccceeeccceeecCccc
Confidence 3444432 3556889999999999999999999999998855 37789999999999999999986 221 000
Q ss_pred ----cceEEEEEEEeCCCCCCcceeEEEEEcC
Q psy6698 111 ----SDVTLVVSVYDRKSLKKKQLIGWFSLGQ 138 (170)
Q Consensus 111 ----~~~~l~i~v~~~~~~~~~~~iG~~~i~l 138 (170)
.-..+.+++|+.++.+.++|+|+.....
T Consensus 270 ~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p 301 (1105)
T KOG1326|consen 270 LVLKNPPIRVFEVYDLDRSGINEFKGRKKQRP 301 (1105)
T ss_pred hhhcCCCeEEEEeehhhhhchHHhhcccccce
Confidence 1136789999999999999999866543
No 130
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.44 E-value=0.0028 Score=44.74 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=67.5
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccc-eeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMS-RAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVY 120 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~-~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~ 120 (170)
...+.|+|+.+.++.. .....+.||.+.+..+ ++.+. ...|+.......+.|+|.+.|++...+++ +..|.|.||
T Consensus 7 ~~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG-~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNA--AERTMKVGVQAGLFHG-GESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCcc--CCCCceEEEEEEEEEC-CEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence 3468899999999886 2234567888877763 43332 34555555456799999999998877775 467999999
Q ss_pred eCCCCC----------------CcceeEEEEEcCCCC
Q psy6698 121 DRKSLK----------------KKQLIGWFSLGQNST 141 (170)
Q Consensus 121 ~~~~~~----------------~~~~iG~~~i~l~~~ 141 (170)
...... ....||.+.+.+.+-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 854321 246999999998753
No 131
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.41 E-value=0.0037 Score=43.43 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=66.2
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccc-eeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMS-RAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVY 120 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~-~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~ 120 (170)
...+.|.|+.+.+++... ..+.||++.+..+ ++.+. ...|+.+.. .++.|||.+.|++...++. +..|.|.+|
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g-~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHG-GEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEEC-CEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEE
Confidence 447889999999887642 3578999888763 33222 234444443 5789999999998887774 467999999
Q ss_pred eCCCCC----CcceeEEEEEcCCCC
Q psy6698 121 DRKSLK----KKQLIGWFSLGQNST 141 (170)
Q Consensus 121 ~~~~~~----~~~~iG~~~i~l~~~ 141 (170)
+....+ ....+|.+.++|.+.
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECC
Confidence 865321 225799999998753
No 132
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.37 E-value=0.0022 Score=44.35 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCc-cceeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQE-MSRAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVY 120 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~-~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~ 120 (170)
...+.|.+....++... .....+.|+.+.+..+ ++. .....|.....+.++.|||.+.|++...++. +..|.|++|
T Consensus 7 ~~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g-~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~ 84 (156)
T cd08380 7 NFNLRIKIHGITNINLL-DSEDLKLYVRVQLYHG-GEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIY 84 (156)
T ss_pred CCCeEEEEEeecccccc-CCCceeEEEEEEEEEC-CEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEE
Confidence 34567777777766541 1233567888877763 332 2234444444446799999999998777774 467999999
Q ss_pred eCCCCC--CcceeEEEEEcCCCC
Q psy6698 121 DRKSLK--KKQLIGWFSLGQNST 141 (170)
Q Consensus 121 ~~~~~~--~~~~iG~~~i~l~~~ 141 (170)
+....+ .+..||.+.+++-+.
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEcc
Confidence 976443 468999999998753
No 133
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.34 E-value=0.0016 Score=45.31 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=57.7
Q ss_pred CCCCcEEEEEEEeCCCCcc-ceeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEEeCCCCCCcceeEEEEEcCCC
Q psy6698 63 RAPDTYVKLMLLSSSGQEM-SRAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVYDRKSLKKKQLIGWFSLGQNS 140 (170)
Q Consensus 63 ~~~~p~v~~~l~~~~~~~~-~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~~~~~~~~~~~iG~~~i~l~~ 140 (170)
...+.||.+.+..+ ++.+ ....|+.+..+..+.|||...|++...++. +..|.|+||+....++...+|.+.+++.+
T Consensus 28 ~~~~l~V~~~l~~~-~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDD-GKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEEC-CEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 34678888888763 3322 233555565566789999999999888875 46799999998765567899999999875
Q ss_pred C
Q psy6698 141 T 141 (170)
Q Consensus 141 ~ 141 (170)
.
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 3
No 134
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.07 E-value=0.005 Score=43.36 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccc-eeeeccee----CCCCCeeeeeEEEEeecCCcc-ceEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMS-RAKTSVRR----GQPNPLFKETFVFQVALFHLS-DVTLV 116 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~-~~~t~~~~----~t~~p~~~e~~~f~~~~~~l~-~~~l~ 116 (170)
...+.|.|..+.+++........+.|+.+.+..+ ++.+. ...|+... ....+.|||.+.|++...++. +..|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g-~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHG-GRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEEC-CEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 4567888999999987665456788999888763 43332 22333211 123577999999998877764 46899
Q ss_pred EEEEeCCCCC---------CcceeEEEEEcCCCC
Q psy6698 117 VSVYDRKSLK---------KKQLIGWFSLGQNST 141 (170)
Q Consensus 117 i~v~~~~~~~---------~~~~iG~~~i~l~~~ 141 (170)
|++|.....+ .+..||.+.++|.+-
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999865433 357999999998764
No 135
>KOG1265|consensus
Probab=97.05 E-value=0.0011 Score=56.45 Aligned_cols=91 Identities=24% Similarity=0.431 Sum_probs=66.4
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCcc-ceeeeccee-CCCCCeeeee-EEEE-eecCCccceEEEEE
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEM-SRAKTSVRR-GQPNPLFKET-FVFQ-VALFHLSDVTLVVS 118 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~-~~~~t~~~~-~t~~p~~~e~-~~f~-~~~~~l~~~~l~i~ 118 (170)
.+.+.|+|+.+.-|..+. .+.||.+.+..-+.... +.++|++.. ++.||+|+|. |.|. +-..++. .|.|.
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRia 775 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIA 775 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heeee
Confidence 456789999998886554 45899988863222222 345666555 7889999954 7887 5566665 89999
Q ss_pred EEeCCCCCCcceeEEEEEcCCCCCh
Q psy6698 119 VYDRKSLKKKQLIGWFSLGQNSTSE 143 (170)
Q Consensus 119 v~~~~~~~~~~~iG~~~i~l~~~~~ 143 (170)
||+.+ ..+||+-.++++.+..
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred eeccC----CceeeeeccchhcccC
Confidence 99865 4799999999987765
No 136
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.88 E-value=0.015 Score=41.20 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEEe
Q psy6698 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVYD 121 (170)
Q Consensus 43 ~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~~ 121 (170)
...++|.|..+..+. .+.......||++.+.. ++.......|.....+.++.|||.+.|++...++. ...|.|.||+
T Consensus 9 ~~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDIPV-LPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecccC-cCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 446778888876432 22233345788877766 34333344666666667899999999998888875 4679999998
Q ss_pred CCCCC----------------CcceeEEEEEcCCC
Q psy6698 122 RKSLK----------------KKQLIGWFSLGQNS 140 (170)
Q Consensus 122 ~~~~~----------------~~~~iG~~~i~l~~ 140 (170)
....+ .+..||-+.+.|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 53211 24578888888764
No 137
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=96.82 E-value=0.036 Score=39.57 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=47.6
Q ss_pred ceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC--CCcceeEEEEEcCCC
Q psy6698 82 SRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL--KKKQLIGWFSLGQNS 140 (170)
Q Consensus 82 ~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~--~~~~~iG~~~i~l~~ 140 (170)
..++|.+.....+|.|+|++.+.++.+...+..|.|.+++...- .....+|-+.++|-.
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 35678888888999999999999999888889999999884421 222689999999864
No 138
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.76 E-value=0.069 Score=37.97 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=38.6
Q ss_pred ceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC-CCc--ceeEEEEEcCCC
Q psy6698 82 SRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL-KKK--QLIGWFSLGQNS 140 (170)
Q Consensus 82 ~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~-~~~--~~iG~~~i~l~~ 140 (170)
....|.+...+.+|.|+|++.+.++.....+..|.|.+++...- +++ ..+|-+.++|..
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45677777788899999999999998877889999999995422 222 799999999986
No 139
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.73 E-value=0.013 Score=45.70 Aligned_cols=87 Identities=17% Similarity=0.312 Sum_probs=63.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCc-----cceEEEEEEE
Q psy6698 46 IFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHL-----SDVTLVVSVY 120 (170)
Q Consensus 46 L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l-----~~~~l~i~v~ 120 (170)
+.|.|+++++++... .....+...+ +| ....|..+..+..|.|+-.+.-.+....+ .+..|++..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~---ng---~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF---NG---ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe---CC---ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence 568899999998652 2334556666 33 36677788888899999887776654333 3457888888
Q ss_pred eCC-CCCCcceeEEEEEcCCCC
Q psy6698 121 DRK-SLKKKQLIGWFSLGQNST 141 (170)
Q Consensus 121 ~~~-~~~~~~~iG~~~i~l~~~ 141 (170)
-.+ ..+..+.||.+.++|++.
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred EecCCCCcceeccEEEEEcccc
Confidence 766 556779999999999977
No 140
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.63 E-value=0.027 Score=38.33 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=51.4
Q ss_pred cEEEEEEEeCCCCccc--eeeecceeCC-CCCeeeeeEEEEeecCCcc-ceEEEEEEEeCCCCCCc----ceeEEEEEcC
Q psy6698 67 TYVKLMLLSSSGQEMS--RAKTSVRRGQ-PNPLFKETFVFQVALFHLS-DVTLVVSVYDRKSLKKK----QLIGWFSLGQ 138 (170)
Q Consensus 67 p~v~~~l~~~~~~~~~--~~~t~~~~~t-~~p~~~e~~~f~~~~~~l~-~~~l~i~v~~~~~~~~~----~~iG~~~i~l 138 (170)
.||.+.+.. +++.+. ...|+....+ ..+.|+|.+.|++...++. +..|.|+||........ ..||.+.+++
T Consensus 4 ~~V~~~ly~-g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 4 LYVECQLYH-GGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEE-TTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred EEEEEEEEE-CCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 466666665 343333 3366666666 7899999999998877774 46799999986654444 7999999998
Q ss_pred CCC
Q psy6698 139 NST 141 (170)
Q Consensus 139 ~~~ 141 (170)
.+-
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 753
No 141
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=96.63 E-value=0.036 Score=35.39 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=53.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccc-eeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEEeC
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMS-RAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVYDR 122 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~-~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~~~ 122 (170)
.+.+.+....+..........+.|+++.+..+ ++.+. ...|+.+.....+.|||...|++...+++ +..|.|.+|+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g-~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHG-GKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEEC-CEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 36677777777765544434578999988763 43332 33555555566689999999998877774 46789999985
Q ss_pred C
Q psy6698 123 K 123 (170)
Q Consensus 123 ~ 123 (170)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 4
No 142
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.55 E-value=0.088 Score=37.76 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=47.1
Q ss_pred cceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC-C---CcceeEEEEEcCC
Q psy6698 81 MSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL-K---KKQLIGWFSLGQN 139 (170)
Q Consensus 81 ~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~-~---~~~~iG~~~i~l~ 139 (170)
...++|.+.....+|.|+|++.+.++.+...+..|.|.+++...- . .+..+|-+.++|-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 345677788888899999999999999888889999999885421 2 2357899999885
No 143
>KOG3837|consensus
Probab=96.04 E-value=0.0015 Score=51.29 Aligned_cols=112 Identities=14% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCC-c--------c
Q psy6698 41 GTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFH-L--------S 111 (170)
Q Consensus 41 ~~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~-l--------~ 111 (170)
.+...|.+.|+++.+++.....--.|.|+++.+--.+ ..-.+.+|.+++.+.+|.|.|.|..++...- . .
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 3567788889999887754422234568887653211 1234678999999999999999988876411 1 2
Q ss_pred ceEEEEEEEeCCCC-CCcceeEEEEEcCCCCChH-HHHHHHHHh
Q psy6698 112 DVTLVVSVYDRKSL-KKKQLIGWFSLGQNSTSEE-ELAHWNEMC 153 (170)
Q Consensus 112 ~~~l~i~v~~~~~~-~~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 153 (170)
+..+.|.+|++..+ ++|.++|.+.+.+.-+..+ ++...++|.
T Consensus 443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~ 486 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLK 486 (523)
T ss_pred hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecc
Confidence 35789999998744 6788999999998755331 445555553
No 144
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.59 E-value=0.14 Score=35.40 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=65.0
Q ss_pred CCCCeEEEEEEEeecCCCCCCC--CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCcc-------
Q psy6698 41 GTTGRIFIEVIKGSHFRNVAMT--RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLS------- 111 (170)
Q Consensus 41 ~~~~~L~v~i~~a~~L~~~~~~--~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~------- 111 (170)
+....|++.|..++-+..--.. +.....+.+++.-. + ++++|+.+..+.+|.|+|.|.|++..+...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~-~---QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR-G---QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATT 81 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec-C---ceEecCCcccccCCCCCCcEEEEecccccccccchhH
Confidence 3445577888877644322111 44556666666541 2 589999999999999999999998876421
Q ss_pred ----ceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCC
Q psy6698 112 ----DVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKG 157 (170)
Q Consensus 112 ----~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~ 157 (170)
...+.+.|..-+..+...++|. ...-|...+..+.
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s-----------~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGS-----------HFLDWRKVLCSGN 120 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeee-----------ceehHHHHhccCC
Confidence 1356666666555444456665 3344777665544
No 145
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=94.76 E-value=0.98 Score=31.92 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=43.4
Q ss_pred eeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC-----CCCcceeEEEEEcCCC
Q psy6698 83 RAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS-----LKKKQLIGWFSLGQNS 140 (170)
Q Consensus 83 ~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~-----~~~~~~iG~~~i~l~~ 140 (170)
..-+.+.....+|.|++++.+.++.....+..|.|.+++..- ......+|-+.++|-.
T Consensus 53 s~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 333444444489999999999997765577899999998542 2346799999999876
No 146
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.50 E-value=0.93 Score=30.51 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=53.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeeccee-CCCCCeeeeeEEEEeec------CCccceEEEE
Q psy6698 45 RIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRR-GQPNPLFKETFVFQVAL------FHLSDVTLVV 117 (170)
Q Consensus 45 ~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~-~t~~p~~~e~~~f~~~~------~~l~~~~l~i 117 (170)
.+.+.|.+..+++. .+..+.+.+..... ......|.... ..-...|++.|.+.+.. .......+.|
T Consensus 8 ~~~l~i~~l~~~p~------~~~~v~v~wkr~~~-~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPS------SNGKVFVKWKRGDK-SKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCC------CCCEEEEEEEECCC-CccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45788888888775 22333344432111 11123333332 34457999999988552 1245567889
Q ss_pred EEEeCCCCCCcceeEEEEEcCCCC
Q psy6698 118 SVYDRKSLKKKQLIGWFSLGQNST 141 (170)
Q Consensus 118 ~v~~~~~~~~~~~iG~~~i~l~~~ 141 (170)
.|+....-++...+|.+.|.|.+.
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHh
Confidence 998864323336999999998754
No 147
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=94.14 E-value=1.5 Score=31.36 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=47.5
Q ss_pred cceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCC--CC-------CCcceeEEEEEcCCC
Q psy6698 81 MSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK--SL-------KKKQLIGWFSLGQNS 140 (170)
Q Consensus 81 ~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~--~~-------~~~~~iG~~~i~l~~ 140 (170)
.....|.+...+.+|.|.|++.+.++..-..+..|.|++++.. .- .....+|-+.++|-.
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4567888888889999999999999887777889999999854 11 123578999999865
No 148
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.18 E-value=0.72 Score=32.34 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=48.2
Q ss_pred CCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCC
Q psy6698 65 PDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS 142 (170)
Q Consensus 65 ~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~ 142 (170)
...|+++.+ +++.+...+.+.......-.|++.|.+.+.. .+ ..|.+.||.... ..+..|+++.+++-...
T Consensus 37 ~~~~ikl~~---N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFF---NDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEE---CCEEEEeeeeEecCCCeEEeccCEEEEEEec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 456888777 4544333333333344456788888887654 22 489999999877 66899999999987544
No 149
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=92.18 E-value=0.87 Score=32.34 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=46.8
Q ss_pred cceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCC------CCcceeEEEEEcCCCC
Q psy6698 81 MSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL------KKKQLIGWFSLGQNST 141 (170)
Q Consensus 81 ~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~------~~~~~iG~~~i~l~~~ 141 (170)
.....|.+...+.+|.|+|++...++..-..+..|.|.+++.+-- .....+|-+.++|-..
T Consensus 53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~ 119 (179)
T cd08696 53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRN 119 (179)
T ss_pred ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecC
Confidence 346778888888899999999999988776778999999984311 1235799999988643
No 150
>KOG1452|consensus
Probab=84.88 E-value=5.2 Score=31.07 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=46.0
Q ss_pred EEEEeCCCCeEEEEEEEeecCCCCCC--CCCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccce
Q psy6698 36 GLSYNGTTGRIFIEVIKGSHFRNVAM--TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDV 113 (170)
Q Consensus 36 ~l~~~~~~~~L~v~i~~a~~L~~~~~--~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~ 113 (170)
.+....-.|.|.+.+..+++|.-... +-.-+.|..+.... ....+|.+......-.|.|+|..++-..+
T Consensus 43 ~l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-----qh~aRt~vrs~~~~f~w~e~F~~Dvv~~~---- 113 (442)
T KOG1452|consen 43 HLRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-----QHPARTRVRSSGPGFAWAEDFKHDVVNIE---- 113 (442)
T ss_pred eeeeecccceEEEEEecccccccChhccCceeeeeeeeeecc-----cCccccccccCCCCccchhhceeecccce----
Confidence 34445568999999999999864332 22334555554322 13344444444444467777776655432
Q ss_pred EEEEEEEeCCC
Q psy6698 114 TLVVSVYDRKS 124 (170)
Q Consensus 114 ~l~i~v~~~~~ 124 (170)
.+.+-||.|+.
T Consensus 114 vl~~lvySW~p 124 (442)
T KOG1452|consen 114 VLHYLVYSWPP 124 (442)
T ss_pred eeeEEEeecCc
Confidence 56666766654
No 151
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=84.18 E-value=5.6 Score=25.05 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCC
Q psy6698 65 PDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQN 139 (170)
Q Consensus 65 ~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~ 139 (170)
.+....+.+.+ .....|.-...+ +..|++.|.+++... +.|.|.||.+|. ....|-..+.|.
T Consensus 9 ~eV~avLklDn-----~~VgqT~Wk~~s-~q~WDQ~Fti~LdRs----RELEI~VywrD~---RslCav~~lrLE 70 (98)
T cd08687 9 SEVSAVLKLDN-----TVVGQTQWKPKS-NQAWDQSFTLELERS----RELEIAVYWRDW---RSLCAVKFLKLE 70 (98)
T ss_pred cceEEEEEEcC-----eEEeeccccccc-cccccceeEEEeecc----cEEEEEEEEecc---hhhhhheeeEhh
Confidence 45555565532 134455544443 678999999987653 589999998775 234444444444
No 152
>KOG0906|consensus
Probab=82.83 E-value=11 Score=32.20 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=50.8
Q ss_pred CCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCcc-ceEEEEEEEeCCCCCCcceeEEEEEcCCCC
Q psy6698 64 APDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLS-DVTLVVSVYDRKSLKKKQLIGWFSLGQNST 141 (170)
Q Consensus 64 ~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~-~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~ 141 (170)
.++.|+...+...+....--..|+.+.....-.|||-..+++...++. +..+.|.+|+....+...++|..++.+...
T Consensus 46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k 124 (843)
T KOG0906|consen 46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGK 124 (843)
T ss_pred chhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecc
Confidence 345677665554321111123333333333345999999998887774 467999999987767778999999888743
No 153
>KOG1327|consensus
Probab=81.07 E-value=4.2 Score=33.72 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=47.6
Q ss_pred CCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC----CCCcceeEEEEEcCCCC
Q psy6698 78 GQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS----LKKKQLIGWFSLGQNST 141 (170)
Q Consensus 78 ~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~----~~~~~~iG~~~i~l~~~ 141 (170)
....+..+|..+.+..+|.|.+.|.....++... .+++.+++.+. ....+|+|++.-.+...
T Consensus 37 ~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ--~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~i 102 (529)
T KOG1327|consen 37 DVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQ--LLRFEVYDIDSRTPDLSSADFLGTAECTLSQI 102 (529)
T ss_pred cccccccceeeeeccCCccceeeechhheeeeee--eEEEEEeecCCccCCcchhcccceeeeehhhh
Confidence 3345567999999999999999998887777654 78888887543 35568999988877654
No 154
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=70.17 E-value=29 Score=22.97 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=45.8
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCCee-eeeEEEEeecCCccceEEEEEEEeC
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLF-KETFVFQVALFHLSDVTLVVSVYDR 122 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~-~e~~~f~~~~~~l~~~~l~i~v~~~ 122 (170)
..|.+.-+.-.++|..+..+.+.||++++-. ++. ...+...... .... ...+.+.+...-.-...+.|.+|+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~---~~~--v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~ 77 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNG---GKK--VFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHK 77 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEET---TEE--EEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEEC
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECC---Ccc--EEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeC
Confidence 4455555666777776666778999998752 211 1111111111 1111 1223333332111124778888886
Q ss_pred CC-CCCcceeEEEEEcCC
Q psy6698 123 KS-LKKKQLIGWFSLGQN 139 (170)
Q Consensus 123 ~~-~~~~~~iG~~~i~l~ 139 (170)
.. ...++.+.++++--.
T Consensus 78 ~~~~~~~~~~f~~~FnT~ 95 (134)
T PF10409_consen 78 RSSSMSKEKMFRFWFNTG 95 (134)
T ss_dssp ETTECCCEEEEEEEEEGG
T ss_pred CCcccccCeEEEEEEeee
Confidence 62 345677888777533
No 155
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=68.31 E-value=18 Score=23.41 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=30.4
Q ss_pred eeeecceeCCCCCeeeeeEEEEeecCCc-----cceEEEEEEEeCCCCCCcceeEEEEEcCCC
Q psy6698 83 RAKTSVRRGQPNPLFKETFVFQVALFHL-----SDVTLVVSVYDRKSLKKKQLIGWFSLGQNS 140 (170)
Q Consensus 83 ~~~t~~~~~t~~p~~~e~~~f~~~~~~l-----~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~ 140 (170)
.+.|.+.. ..+|.++-+..|.+...++ ....+.+.++..-. ..-..+|.+.+++..
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRP 72 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SH
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechh
Confidence 56677776 6699999999998886544 45688899988552 335799999998874
No 156
>KOG0904|consensus
Probab=50.23 E-value=54 Score=29.36 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccce-eeecceeCCCCCeeeeeEEEEeecCCccc-eEEEEEE
Q psy6698 42 TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSR-AKTSVRRGQPNPLFKETFVFQVALFHLSD-VTLVVSV 119 (170)
Q Consensus 42 ~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~-~~t~~~~~t~~p~~~e~~~f~~~~~~l~~-~~l~i~v 119 (170)
-...+.|.++.+.++..... ...-.+|...+.. ++..+.. .+|..+..+..|.||+.+.|++.-.+++. ..|-+.|
T Consensus 341 ~~~~frI~l~~is~~n~~~t-~~~kV~V~~~lyh-G~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 341 LDRPFRIKLVGISKVNLPET-VDLKVFVEAGLYH-GTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCCceEEEEeeccccCCCcc-cceEEEEEEEEEE-CCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 35567788888766543221 1122455555554 2333444 45555555778999999999999888754 3455666
Q ss_pred Ee
Q psy6698 120 YD 121 (170)
Q Consensus 120 ~~ 121 (170)
|.
T Consensus 419 ~~ 420 (1076)
T KOG0904|consen 419 YA 420 (1076)
T ss_pred eE
Confidence 64
No 157
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=45.11 E-value=1e+02 Score=21.41 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=33.7
Q ss_pred CCCeeeeeEEEEeecCCccc-eEEEEEEEeCCCCCCcceeEEEEEcC
Q psy6698 93 PNPLFKETFVFQVALFHLSD-VTLVVSVYDRKSLKKKQLIGWFSLGQ 138 (170)
Q Consensus 93 ~~p~~~e~~~f~~~~~~l~~-~~l~i~v~~~~~~~~~~~iG~~~i~l 138 (170)
....|+-.|.+.+....+.. ..|.|+||..|..+++.+.|-..+.+
T Consensus 55 ~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 55 DVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred CceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 34678887777766554433 48999999999999988887655544
No 158
>KOG0694|consensus
Probab=34.04 E-value=37 Score=29.34 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecCCccceEEEEEEEeCCC
Q psy6698 63 RAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKS 124 (170)
Q Consensus 63 ~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~ 124 (170)
.+.+||+.+.+... ....+.+.+.+..|.|+++|..++... ..+.|.+++...
T Consensus 26 ~al~~y~~v~vk~~-----~~~~~~~~~~~~~~~~~~~F~~~v~~~----~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 26 QALQPYLAVELKVK-----QGAENMTKVELRIPELRETFHVEVVAG----GAKNIIVLLKSP 78 (694)
T ss_pred hhhhhhheecccee-----ecccccCCCCCCCchhhhheeeeeecC----CceEEEEEecCC
Confidence 34578888777432 122344477889999999999986554 367788877543
No 159
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=31.84 E-value=1.7e+02 Score=19.98 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=48.8
Q ss_pred CCCcEEEEEEEeCCCCccceeeecceeCCCCCeeeeeEEEEeecC----------CccceEEEEEEEeCCCCCCcceeEE
Q psy6698 64 APDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALF----------HLSDVTLVVSVYDRKSLKKKQLIGW 133 (170)
Q Consensus 64 ~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p~~~e~~~f~~~~~----------~l~~~~l~i~v~~~~~~~~~~~iG~ 133 (170)
..+.|+.+++.. ..++|+......--.|+|.|.|.-.+. .+....+.++++...... .+.++.
T Consensus 19 ~~~vyL~v~~lg------~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ 91 (140)
T PF14909_consen 19 KGDVYLSVCILG------QYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAY 91 (140)
T ss_pred CCCEEEEEEEcc------cEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEE
Confidence 468999999965 367888888887778999999984332 223467888888755433 567776
Q ss_pred EEEcCCC
Q psy6698 134 FSLGQNS 140 (170)
Q Consensus 134 ~~i~l~~ 140 (170)
..-..++
T Consensus 92 ye~n~rD 98 (140)
T PF14909_consen 92 YEENTRD 98 (140)
T ss_pred Eeccccc
Confidence 6655543
No 160
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=26.52 E-value=33 Score=24.71 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=34.3
Q ss_pred ceEEEEEEEeCCCCCCcceeEEEEEcCCCCChHHHHHHHHHhhcCCCeee----ecccc
Q psy6698 112 DVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLA----RWHIL 166 (170)
Q Consensus 112 ~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~~~~~~~----~w~~l 166 (170)
...|++.+|+.+.....+-=..++++++.... ...-|..+...|++.++ -||.|
T Consensus 116 ggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~-~~~ag~~lkL~PGesitL~Pg~~HsF 173 (225)
T COG3822 116 GGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQ-THTAGSQLKLSPGESITLPPGLYHSF 173 (225)
T ss_pred CceEEEEEeccccccCcCCCCCeEecCCCcEE-EeccceeEEECCCCcEecCCCceeee
Confidence 35899999997743333333446666665443 45567777777887776 45554
No 161
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=26.40 E-value=2.2e+02 Score=19.59 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=48.2
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccc-eeeecce--eCCCCCeeeeeEEEEeecCCcc-ceEEEE
Q psy6698 42 TTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMS-RAKTSVR--RGQPNPLFKETFVFQVALFHLS-DVTLVV 117 (170)
Q Consensus 42 ~~~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~-~~~t~~~--~~t~~p~~~e~~~f~~~~~~l~-~~~l~i 117 (170)
....|.|.|.+.. +. +.....+||+.+++...+|.-+. .+.|.+. +....-.|+.......+.+.+. +..+.+
T Consensus 11 g~t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~f 87 (147)
T PF14186_consen 11 GMTYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFF 87 (147)
T ss_dssp T--EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEE
T ss_pred CCceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEE
Confidence 3444666666644 32 33445689999999875665443 4455544 2233456666555555555553 467888
Q ss_pred EEEeCCCCC-CcceeEEEEEcCCCCC
Q psy6698 118 SVYDRKSLK-KKQLIGWFSLGQNSTS 142 (170)
Q Consensus 118 ~v~~~~~~~-~~~~iG~~~i~l~~~~ 142 (170)
++.|+..-+ +-...+-+.++++.+.
T Consensus 88 E~kH~K~kk~k~S~kcw~fme~dei~ 113 (147)
T PF14186_consen 88 EFKHYKPKKKKTSTKCWAFMELDEIK 113 (147)
T ss_dssp EEEEEETTTTCEEEEEEEEEEGGG--
T ss_pred EEEeeeccceeeeeeEEEEEEhhhcc
Confidence 888865333 2334555666666543
No 162
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=26.08 E-value=1.5e+02 Score=17.64 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=20.3
Q ss_pred EEEEEEEeCCCCCCcceeEEEEEcCC
Q psy6698 114 TLVVSVYDRKSLKKKQLIGWFSLGQN 139 (170)
Q Consensus 114 ~l~i~v~~~~~~~~~~~iG~~~i~l~ 139 (170)
...|.+|+.+.+..|++++.....-+
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~Td~~ 38 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKTDSD 38 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEECCC
Confidence 45689999998788999988777543
No 163
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=23.57 E-value=3.9e+02 Score=21.48 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=58.0
Q ss_pred CeEEEEEEEeecCCCCCCCCCCCcEEEEEEEeCCCCccceeeecceeCCCCC--eeeeeEEEEeecCCccceEEEEEEEe
Q psy6698 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNP--LFKETFVFQVALFHLSDVTLVVSVYD 121 (170)
Q Consensus 44 ~~L~v~i~~a~~L~~~~~~~~~~p~v~~~l~~~~~~~~~~~~t~~~~~t~~p--~~~e~~~f~~~~~~l~~~~l~i~v~~ 121 (170)
-.|.|.|.+..++.. ....|+.+.. |+ ...+|..+..+..- .-.+.....+...+ ..|.+.++.
T Consensus 58 F~LLVeI~EI~~i~k-----~khiyIef~~----Gr--~d~TT~~IpTsKK~RI~IqqRV~IkIRQcD---nTLkI~lfK 123 (508)
T PTZ00447 58 FYLLVKINEIFNINK-----YKHIYIIFST----DK--YDFTTDEIPTNKKNRIHIDQRVDIKIRQCD---ETLRVDLFT 123 (508)
T ss_pred eeEEEEehhhhcccc-----ceeEEEEEEc----Cc--eEEEccccccCcCceEEEeeeeeeeeeecC---ceEEEEEEe
Confidence 346677766555432 2456776654 22 23444333333322 33354555555544 588999987
Q ss_pred CCCCCCcceeEEEEEcCCCC--ChH-HHHHHHHHhhcCCCe
Q psy6698 122 RKSLKKKQLIGWFSLGQNST--SEE-ELAHWNEMCKVKGEQ 159 (170)
Q Consensus 122 ~~~~~~~~~iG~~~i~l~~~--~~~-~~~~W~~l~~~~~~~ 159 (170)
.... +...||.+.+.+++. ... .-..||-+..++.+.
T Consensus 124 KkLv-kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~ 163 (508)
T PTZ00447 124 TKLT-KKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEI 163 (508)
T ss_pred cccc-ceeEEEEEEecccHHHHhccCCccceEEEecCCcee
Confidence 7654 458899999998842 111 346799886665543
No 164
>KOG1329|consensus
Probab=23.19 E-value=36 Score=30.28 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=54.0
Q ss_pred CcEEEEEEEeCCCCccceeeecceeCC-CCCeeeeeEEEEeecCCccceEEEEEEEeCCCCCCcceeEEEEEcCCCCCh-
Q psy6698 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQ-PNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSE- 143 (170)
Q Consensus 66 ~p~v~~~l~~~~~~~~~~~~t~~~~~t-~~p~~~e~~~f~~~~~~l~~~~l~i~v~~~~~~~~~~~iG~~~i~l~~~~~- 143 (170)
++|+.+.+.. ....+|....+. .+|.|.+.|...+.-.+ ..+.+.+-+.+-.+...++|.+.++....-.
T Consensus 139 e~Ylt~~l~~-----~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~---g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 139 ENYLTVVLHK-----ARYRRTHVIYEFLENSRWSFSFDIGFAHKA---GYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred cchheeeech-----hhhhchhhhhcccccchhhhhccccccccc---cEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 6788877632 134455555555 57889876544332222 4677777666655546788888888765433
Q ss_pred HHHHHHHHHhhcCCCee
Q psy6698 144 EELAHWNEMCKVKGEQL 160 (170)
Q Consensus 144 ~~~~~W~~l~~~~~~~~ 160 (170)
.....|++++...++++
T Consensus 211 ~~~~~~~~Il~~d~~~~ 227 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPH 227 (887)
T ss_pred ccccceeeeeccCCccc
Confidence 36677888766555443
No 165
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=21.46 E-value=1.8e+02 Score=17.23 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=15.4
Q ss_pred cCCCCCccEEEEEEEEeCCCCeEEEEEEE
Q psy6698 24 SMLHGGVAELLLGLSYNGTTGRIFIEVIK 52 (170)
Q Consensus 24 ~~~~~~~G~l~~~l~~~~~~~~L~v~i~~ 52 (170)
.+....+|.|.+.+.+.. +.+.|.+..
T Consensus 18 ~L~p~~LG~v~v~l~~~~--~~l~v~~~~ 44 (85)
T PF02120_consen 18 QLDPPELGSVEVKLRLQG--GNLSVQFTA 44 (85)
T ss_dssp --SSGGG--EEEEEEEET--TEEEEEEE-
T ss_pred EEcccccCcEEEEEEEeC--CEEEEEEEE
Confidence 445667899999998754 466666554
Done!