RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6698
(170 letters)
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 156 bits (395), Expect = 2e-49
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 6 GSSEILSLGRSDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAP 65
GS+ ++L + + + G ++L+ L Y+ G + + +I+ H +
Sbjct: 1 GSARGMALYEEEQVERIGDIEERG--KILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYS 58
Query: 66 DTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL 125
D +VKL L G++ ++ KT +++ NP F E F + + L+ +L +SV+D
Sbjct: 59 DPFVKLWLKPDMGKK-AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117
Query: 126 KKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLARWHILC 167
K IG LG ++ E L HW E K K +++ RWH L
Sbjct: 118 KSNDYIGGCQLGISAKG-ERLKHWYECLKNKDKKIERWHQLQ 158
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 151 bits (384), Expect = 6e-48
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
ELL+ L Y TT + + V+K H ++ D YVK+ L + + +S+ KT V++
Sbjct: 18 ELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHA-KKRISKKKTHVKKC 76
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
PN +F E FVF + L ++++ V D + + ++IG LG + HW E
Sbjct: 77 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEG-SGGGHWKE 135
Query: 152 MCKVKGEQLARWHILC 167
+C Q+A+WH+LC
Sbjct: 136 ICDFPRRQIAKWHMLC 151
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 148 bits (375), Expect = 9e-47
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
ELLL L YN + I + +IK + + + + D YVK+ L+ + + + KT ++
Sbjct: 4 ELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK-DKRVEKKKTVTKKR 62
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP+F E+F F + L + T++++V D+ L + +IG L S E+ HW +
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP-GEVKHWKD 121
Query: 152 MCKVKGEQLARWHIL 166
M + +A+WH L
Sbjct: 122 MIARPRQPVAQWHQL 136
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 149 bits (377), Expect = 9e-47
Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
++ L Y T G++ + +++ + + + + D YVK+ L+ + G+ + + KT++++
Sbjct: 13 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKRLKKKKTTIKKN 71
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP + E+F F+V + V +VV+V D + K IG +G NS + EL HW++
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS-TGAELRHWSD 130
Query: 152 MCKVKGEQLARWHIL 166
M +A+WH L
Sbjct: 131 MLANPRRPIAQWHTL 145
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 149 bits (378), Expect = 3e-45
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 1/147 (0%)
Query: 21 STHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQE 80
+ EL L Y T G + + +IK S+ + + +T D YVK L+S G+
Sbjct: 129 LEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISE-GRR 187
Query: 81 MSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNS 140
+ + KTS+++ NP + E VF VA + +V L ++V D + ++IG +G +
Sbjct: 188 LKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEA 247
Query: 141 TSEEELAHWNEMCKVKGEQLARWHILC 167
HW EM + + WH L
Sbjct: 248 ADPHGREHWAEMLANPRKPVEHWHQLV 274
Score = 87.2 bits (216), Expect = 2e-21
Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+ L Y + ++ + +++ D YVK+ LL + +T V R
Sbjct: 8 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP---DRKKKFQTKVHRK 64
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG---------WFSLGQNSTS 142
NP+F ETF F V L L+ L SVYD + LIG +
Sbjct: 65 TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 124
Query: 143 EEELAHWNEMCKVKGEQL 160
++ GE
Sbjct: 125 WRDILEGGSEKADLGELN 142
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 141 bits (356), Expect = 4e-42
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 21 STHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQE 80
S + ++ L Y T G++ + +++ + + + + D YVK+ L+ + G+
Sbjct: 127 SAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKR 185
Query: 81 MSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNS 140
+ + KT++++ NP + E+F F+V + V +VV+V D + K IG +G NS
Sbjct: 186 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 245
Query: 141 TSEEELAHWNEMCKVKGEQLARWHILC 167
T EL HW++M +A+WH L
Sbjct: 246 TG-AELRHWSDMLANPRRPIAQWHTLQ 271
Score = 84.9 bits (210), Expect = 1e-20
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+L L Y+ ++ + +I+ + + M D YVK+ LL + + +T V R
Sbjct: 7 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK---KFETKVHRK 63
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP+F E F F+V L+ TLV++VYD K +IG F + N+ +
Sbjct: 64 TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 123
Query: 152 MCKVKGEQ 159
+ ++
Sbjct: 124 DLQSAEKE 131
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 116 bits (293), Expect = 4e-34
Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 5/153 (3%)
Query: 4 STGSSEILSLG--RSDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAM 61
S+GSS + LG + + DS S G + + L Y+ + I +I+ S+ +
Sbjct: 2 SSGSSGVQRLGASEAAAFDSDESEAVGA-TRIQIALKYDEKNKQFAILIIQLSNLSALLQ 60
Query: 62 TRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYD 121
+ +++ +L S +T +F E F ++ L TL V V
Sbjct: 61 QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT 120
Query: 122 RKSLKKKQLIGW--FSLGQNSTSEEELAHWNEM 152
++ +G SL + S E W +
Sbjct: 121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 89.7 bits (223), Expect = 9e-24
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 14 GRSDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLML 73
G S S+ S + +L L Y+ +F+ ++ D YV+ +
Sbjct: 1 GSSGSSGSWNQA-----PKLHYCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSV 52
Query: 74 LSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGW 133
+ +G A+T++++ Q + ++E V +A L TL +++ + + G
Sbjct: 53 ANRTGS--VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGE 110
Query: 134 FSLGQNSTS-EEELAHWNEM 152
LG + TS A W E+
Sbjct: 111 LRLGLDGTSVPLGAAQWGEL 130
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 83.6 bits (207), Expect = 2e-21
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 6/138 (4%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTR-APDTYVKLMLLSSSGQEMSRAKTSVRR 90
+ L Y T + + V + + + YVK LL + KTS++R
Sbjct: 11 RIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPD-KSRQGKRKTSIKR 69
Query: 91 GQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLG-QNSTSEEELAHW 149
NPL+ ET +++ L+ TL SV+ + +G + + +++L H
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHC 129
Query: 150 ---NEMCKVKGEQLARWH 164
+ + E H
Sbjct: 130 LPLHGKISAESEGHHHHH 147
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 82.9 bits (205), Expect = 5e-21
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 4 STGSSEILSLGRSDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTR 63
S G S + + +L L Y+ ++ + +I+ + + M
Sbjct: 2 SPGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG 61
Query: 64 APDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRK 123
D YVK+ LL + +T V R NP+F E F F+V L TLV++VYD
Sbjct: 62 TSDPYVKVFLLPDKK---KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD 118
Query: 124 SLKKKQLIGWFSLG-QNSTSEEELAHWNEMCKVK 156
K +IG F + W ++ +
Sbjct: 119 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 82.4 bits (204), Expect = 7e-21
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
++ L + ++ ++ + V + + D YV++ LL + R KT V +
Sbjct: 12 QIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPD-KRRSGRRKTHVSKK 69
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSV--YDRKSLKKKQLIGWFSLGQNSTS-EEELAH 148
NP+F ++F F V+L + TL V+V K K L+G + S +
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129
Query: 149 WNEMCKVKG 157
W ++ + G
Sbjct: 130 WYDLTEDSG 138
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 80.5 bits (199), Expect = 3e-20
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+L L Y+ ++ + +I+ + + M D YVK+ LL + + +T V R
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP---DKKKKFETKVHRK 78
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLG-QNSTSEEELAHWN 150
NP+F E F F+V L TLV++VYD K +IG F + W
Sbjct: 79 TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 138
Query: 151 EM 152
++
Sbjct: 139 DL 140
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 79.3 bits (196), Expect = 1e-19
Identities = 17/125 (13%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+L + L ++ ++ + ++ + R + YVK+ L + ++ +T +
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR-SDKNKRRTKTVKK 67
Query: 92 QPNPLFKETFVFQ-VALFHLSDVTLVVSV--YDRKSLKKKQLIGWFSLGQNSTSEEELAH 148
P + +TF++ V + L +++ R ++ + +G + + ++ H
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
Query: 149 WNEMC 153
W ++
Sbjct: 128 WYKLQ 132
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 77.0 bits (190), Expect = 7e-19
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 35 LGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPN 94
+ L T ++ + V + + D YVKL L+ E + KT R N
Sbjct: 7 IYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQ-KTKTIRSTLN 65
Query: 95 PLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMC- 153
P + E+F F++ D L V ++D + +G S G + + + W ++
Sbjct: 66 PQWNESFTFKLKP-SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLN 124
Query: 154 KVKGEQLARWHILCGD 169
+ +GE +++ +
Sbjct: 125 QEEGEY---YNVPIPE 137
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 77.0 bits (190), Expect = 1e-18
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+ + + + + V + + D YVKL L+ E + KT +
Sbjct: 21 RIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ-KTKTIKC 77
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP + ETF FQ+ D L V ++D + +G S G + + + W +
Sbjct: 78 SLNPEWNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 136
Query: 152 MC-KVKGEQ 159
+ + +GE
Sbjct: 137 LLSQEEGEY 145
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 75.8 bits (187), Expect = 2e-18
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTR---APDTYVKLMLLSSSGQEMSRAKTSV 88
L L YN + + + AM D Y+K+ +L ++ + KT V
Sbjct: 10 TLFFSLEYNFERKAFVVNIKEARGLP--AMDEQSMTSDPYIKMTILP---EKKHKVKTRV 64
Query: 89 RRGQPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKSLKKKQLIG--WFSLGQNSTSEEE 145
R +P F ETF F + + ++ L ++ + +IG L SE +
Sbjct: 65 LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124
Query: 146 LAHWNEMCK 154
+ E+
Sbjct: 125 MLMNREIIS 133
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 75.0 bits (185), Expect = 3e-18
Identities = 18/121 (14%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+L + L ++ ++ + ++ + R + YVK+ L + ++ +T +
Sbjct: 6 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR-SDKNKRRTKTVKK 64
Query: 92 QPNPLFKETFVFQ-VALFHLSDVTLVVSVYD--RKSLKKKQLIGWFSLGQNSTSEEELAH 148
P + +TF++ V + L ++++D R ++ + +G + + ++ H
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 149 W 149
W
Sbjct: 125 W 125
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 74.7 bits (184), Expect = 7e-18
Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 19/150 (12%)
Query: 18 STDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSS 77
S+ S+ S + G + + YN + ++++K + D +VK+ LL
Sbjct: 2 SSGSSGSRENLG--RIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL--- 56
Query: 78 GQEMSRAKTSVRRGQPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKSLKKKQLIGWFSL 136
+ + +T V+R NP + ETF+F+ + L + V D + IG S+
Sbjct: 57 PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSI 116
Query: 137 GQNSTSEEELAHWNEMCKVKGEQLARWHIL 166
L + + W L
Sbjct: 117 P--------LNKVD-----LTQMQTFWKDL 133
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 74.4 bits (183), Expect = 9e-18
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 14 GRSDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKG-------SHFRNVAMTRAPD 66
G S S+ S + + G L Y+ + + VI+ SH + +
Sbjct: 1 GSSGSSGSKYQL---G--MLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSN 55
Query: 67 TYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLK 126
YVK+ LL + + +T V+R P+F+E + F++ TL+++V D
Sbjct: 56 PYVKICLLP---DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS 112
Query: 127 KKQLIGWFSLGQNSTSEEELAHW 149
+ +IG S+ + HW
Sbjct: 113 RHCVIGKVSVPLCEVDLVKGGHW 135
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 73.2 bits (180), Expect = 2e-17
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 16 SDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLS 75
++S DS + G L L Y+ + +I+ + + D YVKL LL
Sbjct: 4 ANSYDSDQATTLG---ALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL- 59
Query: 76 SSGQEMSRAKTSVRRGQPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKSLKKKQLIGWF 134
+ ++ +T R NP++ ET + + + TL +SV D + IG
Sbjct: 60 PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 119
Query: 135 SLGQNSTSEEELAHWN 150
+ ++N
Sbjct: 120 RFSLKKLKANQRKNFN 135
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 71.6 bits (176), Expect = 1e-16
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRN-VAMTR-APDTYVKLMLLSSSGQEMSRAKTSVR 89
L LS + + + +I+G + ++ D YVK+ L+ + KT
Sbjct: 15 AGQLRLSIDAQDRVLLLHIIEG---KGLISKQPGTCDPYVKISLIPE-DSRLRHQKTQTV 70
Query: 90 RGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSL-KKKQLIG--WFSLGQNSTSEEEL 146
+P F E F F V L+V+V++R S ++ LIG F + T ++E+
Sbjct: 71 PDCRDPAFHEHFFFPVQ-EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEI 129
Query: 147 AHW 149
+ W
Sbjct: 130 SGW 132
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 68.1 bits (167), Expect = 2e-15
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRN-VAMTR-APDTYVKLMLLSSSGQEMSRAKTSVR 89
+ L +SY G +FI V+ ++ V P+ YVK LL + S+ KT +
Sbjct: 10 AVKLSVSYR--NGTLFIMVMHI---KDLVTEDGADPNPYVKTYLLPD-THKTSKRKTKIS 63
Query: 90 RGQPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTS-EEELA 147
R NP F E V+ + L L +SV +SL++ +G +L + +E
Sbjct: 64 RKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETV 123
Query: 148 HW 149
W
Sbjct: 124 KW 125
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 65.6 bits (160), Expect = 3e-14
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTR-APDTYVKLMLLSSSGQEMSRAKTSVRR 90
++ +G+ G++ +EVI+ ++ P YVK+ LL + G +++ KT + R
Sbjct: 20 DIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLEN-GACIAKKKTRIAR 76
Query: 91 GQPNPLFKETFVFQVALFHLSDVTLVVSVY-DRKSLKKKQLIGWFSLGQNSTSEEELAHW 149
+PL++++ VF + L V V+ D + K +G + L
Sbjct: 77 KTLDPLYQQSLVFDES---PQGKVLQVIVWGDYGRMDHKCFMGVAQIL--------LEEL 125
Query: 150 NEMCKVKGEQLARWHIL 166
+ + W+ L
Sbjct: 126 D-----LSSMVIGWYKL 137
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 64.7 bits (158), Expect = 4e-14
Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 30/147 (20%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVA---MTRAPDTYVKLMLL--------SSSGQE 80
E+ L ++Y+ G + I +++ RN+ D +VK+ LL +
Sbjct: 8 EIQLQINYD--LGNLIIHILQA---RNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62
Query: 81 MSRAKTSVRRGQPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQN 139
+ +T + NP + +T +++ +++ L TL V+V+D +G +
Sbjct: 63 EYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID-- 120
Query: 140 STSEEELAHWNEMCKVKGEQLARWHIL 166
L+ + + RW+ L
Sbjct: 121 ------LSSTS-----HLDNTPRWYPL 136
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 62.6 bits (152), Expect = 5e-13
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 3/113 (2%)
Query: 39 YNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFK 98
+N T + ++VI G + A D YV++ L ++ +T + NP +
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 99 ETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
E +F+V ++ V+D L + +G + E
Sbjct: 63 EEILFRV---LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERP 112
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 60.2 bits (146), Expect = 3e-12
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Query: 28 GGVAELLLGLSYN-GTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKT 86
A + GL + + + + VI G + A D YV++ L ++ +T
Sbjct: 3 ATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQT 62
Query: 87 SVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEEL 146
+ NP + E +F+V H L+ V+D L + +G + E
Sbjct: 63 KTIKKSLNPKWNEEILFRV---HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENP 119
Query: 147 AHWN 150
Sbjct: 120 RLER 123
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 53.0 bits (127), Expect = 2e-09
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFV 102
++ I VI N P YV++ + GQ KT +P +K+
Sbjct: 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTV---DGQS---KKTEKCNNTNSPKWKQPLT 88
Query: 103 FQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEM 152
V L V+ ++LK L+G +L T + E+
Sbjct: 89 VIVT----PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEV 134
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 50.9 bits (122), Expect = 6e-09
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 41 GTTGRIFIEVIKGSHFRNVAMTR--APDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFK 98
G++G + + V N+ T+ PD V ++ + KT + NP++
Sbjct: 4 GSSGMLRVIVESA---SNIPKTKFGKPDPIVSVIFKDE------KKKTKKVDNELNPVWN 54
Query: 99 ETFVFQVALF-HLSDVTLVVSVYDRKSLKKKQLIGWFSLG 137
E F + +L + V D +++ + +LIG ++
Sbjct: 55 EILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVA 94
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 50.0 bits (120), Expect = 1e-08
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 38 SYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLF 97
+G G + + ++ + D YV+L + ++ + G P +
Sbjct: 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGT-TPEW 58
Query: 98 KETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG 132
ETF+F V L ++D+ + +G
Sbjct: 59 NETFIFTV---SEGTTELKAKIFDKDVGTEDDAVG 90
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 47.0 bits (112), Expect = 1e-07
Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 11/115 (9%)
Query: 41 GTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKET 100
+I + V+ + R PD + K+++ S T + +P + +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG----QCHSTDTVKNTLDPKWNQH 57
Query: 101 FVFQVALFHLSDVTLVVSVYDRKSLKKK---QLIGWFSLGQNSTSEEELAHWNEM 152
+ V ++ +SV++ K + KK +G L N+ S + + +
Sbjct: 58 YDLYVG----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRL 108
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 46.2 bits (110), Expect = 2e-07
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 42 TTGRIFIEVIKGSHFRNVA---MTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFK 98
++ + + V++ + A M PD YV+L + ++ R +T NP++
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS---RKRTRHFNNDINPVWN 57
Query: 99 ETFVFQVALFHLSDVTLVVSVYD 121
ETF F + + L +++ D
Sbjct: 58 ETFEFILD--PNQENVLEITLMD 78
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 46.1 bits (109), Expect = 6e-07
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 19/100 (19%)
Query: 43 TGRIFIEVI----------KGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQ 92
G + + + H + D Y+ + + ++ +TS ++
Sbjct: 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV-----DQVRVGQTSTKQKT 82
Query: 93 PNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG 132
P + E F V L ++V+ L +
Sbjct: 83 NKPTYNEEFCANVT----DGGHLELAVFHETPLGYDHFVA 118
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 44.8 bits (106), Expect = 1e-06
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFV 102
+ +I I V+ + T + D YV + + ++ +T G NP+++E F
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV------GKTKKRTKTIYGNLNPVWEENFH 69
Query: 103 FQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQN 139
F+ H S + V V D K ++ F +
Sbjct: 70 FEC---HNSSDRIKVRVLDEDDDIKSRVKQRFKRESD 103
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 43.3 bits (102), Expect = 4e-06
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 43 TGRIFIEVIKG-----------SHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
G + I++ + T D Y+ L + + +T+ ++
Sbjct: 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV---DDSRI--GQTATKQK 59
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG 132
+P + + FV V + ++V+ + +
Sbjct: 60 TNSPAWHDEFVTDVCNGR----KIELAVFHDAPIGYDDFVA 96
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 42.7 bits (100), Expect = 6e-06
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 41 GTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKET 100
G + + V K + +TYV L + + ++ T RG P +++
Sbjct: 2 GVMSLLCVGVKKA---KFDGAQEKFNTYVTLKV------QNVKSTTIAVRGS-QPSWEQD 51
Query: 101 FVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG--WFSLGQNSTSEEELA 147
F+F++ L L V V+++ + ++G W L S EE
Sbjct: 52 FMFEIN--RLDL-GLTVEVWNKGLIWDT-MVGTVWIPLRTIRQSNEEGP 96
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 40.7 bits (96), Expect = 3e-05
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFV 102
G + ++V+K + + D + L L + R +T NP + + F
Sbjct: 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGND------RLQTHTVYKNLNPEWNKVFT 65
Query: 103 FQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSL 136
F + L V+V+D K +G ++
Sbjct: 66 FPI---KDIHDVLEVTVFDEDGDKPPDFLGKVAI 96
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 41.1 bits (96), Expect = 4e-05
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 17/112 (15%)
Query: 41 GTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKET 100
G + + V K + +TYV L + + + T RG P +++
Sbjct: 11 GILSLLCVGVKKA---KFDGAQEKFNTYVTLKV------QNVESTTIAVRGS-QPSWEQD 60
Query: 101 FVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG--WFSLGQNSTSEEELAH-W 149
F+F++ + D+ L V V++ K L ++G W L S EE W
Sbjct: 61 FMFEI---NRLDLGLTVEVWN-KGLIWDTMVGTVWIPLRTIRQSNEEGPGEW 108
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 41.1 bits (95), Expect = 8e-05
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 43 TGRIFIEVIKGSHFRNVAMTRAPDT------YVKLMLLSSSGQEMSRAKTSVRRGQPNPL 96
+ + + V++ V D YV+L + ++ R +T NP+
Sbjct: 17 SHKFTVVVLRA---TKVTKGAFGDMLDTPDPYVELFISTTPDS---RKRTRHFNNDINPV 70
Query: 97 FKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWN 150
+ ETF F + + L +++ D + + +G + +S E
Sbjct: 71 WNETFEFILD--PNQENVLEITLMDANYVMDE-TLGTATFTVSSMKVGEKKEVP 121
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 38.4 bits (88), Expect = 7e-04
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 43 TGRIFIEVIKGSHF--RNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKET 100
R+ + +I G N D V + + SR + NP +
Sbjct: 496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 555
Query: 101 FVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSL 136
F F+V + L+ + V D S K IG ++
Sbjct: 556 FEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTI 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.008
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 24/96 (25%)
Query: 74 LSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDV--------------TLVVSV 119
L + Q + K +V R QP + + + AL L + + V
Sbjct: 119 LYNDNQVFA--KYNVSRLQP---YLK---LRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 120 YDRKSLKKKQLIG--WFSLGQNSTSEEELAHWNEMC 153
++ K W +L ++ E L ++
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Score = 31.7 bits (71), Expect = 0.097
Identities = 29/199 (14%), Positives = 50/199 (25%), Gaps = 87/199 (43%)
Query: 11 LSLGRSDSTDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVK 70
L+L +S ++ ML +LL + N T+ D
Sbjct: 187 LNLKNCNSPETVLEML----QKLLYQIDPNWTSR--------------------SDHSSN 222
Query: 71 LMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDV--------------TLV 116
+ L S + +RR L K ++ L L +V L+
Sbjct: 223 IKLRIHS------IQAELRR-----LLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 117 ----VSVYD---------------RKSLKKKQLIGWFS--LGQNSTSEEELAHWNEMCKV 155
V D +L ++ L ++L E+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD---CRPQDLPR--EVLTT 325
Query: 156 K-------GEQL----ARW 163
E + A W
Sbjct: 326 NPRRLSIIAESIRDGLATW 344
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.020
Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 68/190 (35%)
Query: 26 LHGGVAELLLGLSYNGTTGRIFIEVIKGSHFR-NVAMTRAPDTYVKLMLLSSS------- 77
+H A+LL N TT E+IK ++ + R D L +
Sbjct: 101 IHALAAKLL---QENDTTLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 78 -----GQEMSRAKTSVRRGQPNPLFKE-------------TFVFQVA--LFHLSDVTLVV 117
GQ G + F+E + A L L TL
Sbjct: 157 VAIFGGQ-----------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 118 SVYDRKSLKKKQLIGWFSLGQNSTSEEE----------------LAHWNEMCKVKG---E 158
+ L ++ W ++T +++ LAH+ K+ G
Sbjct: 206 EKVFTQGL---NILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 159 QLARWHILCG 168
+L L G
Sbjct: 262 ELR--SYLKG 269
Score = 33.5 bits (76), Expect = 0.034
Identities = 28/122 (22%), Positives = 39/122 (31%), Gaps = 26/122 (21%)
Query: 35 LGLSY------NGTTGRIFIEVIKGSHFRN--VAMTRA--PDTYVKLMLLSSSGQEMSRA 84
G S N I KG R AM D +K + +E++
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF---KEINEH 1713
Query: 85 KTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLI---GWF---SLGQ 138
TS L T Q AL + + + + LK K LI F SLG+
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLME-----KAAF--EDLKSKGLIPADATFAGHSLGE 1766
Query: 139 NS 140
+
Sbjct: 1767 YA 1768
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 31.1 bits (70), Expect = 0.080
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 85 KTSVRRGQPNP-LFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSL 136
+ V + F ETF + VA + L + +++ + +LIG F +
Sbjct: 51 YSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRM 103
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 31.0 bits (69), Expect = 0.17
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 40 NGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMS----RAKTSVRRGQPNP 95
+ T + +G V+ RA + + + ++ +T V NP
Sbjct: 379 SKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNP 438
Query: 96 LFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIG 132
+ + F+ L L V V+D L+G
Sbjct: 439 RWTDKMDFENVLLSTGGP-LRVQVWDADYGWDDDLLG 474
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1,
phosphoinositide specificity, guanine exchan factor, RHO
GTPase, cytoskeleton, cell migration; 2.37A {Homo
sapiens}
Length = 220
Score = 30.0 bits (67), Expect = 0.29
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 52 KGSHFRNVAMT---RAPDTYV--KLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVFQVA 106
+ +NV +T D ++ + + +S K+ + P + ET +
Sbjct: 42 SKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIP 101
Query: 107 LFHLSDVTLVVSVYDRKSLKKK 128
+ ++ L + R S K
Sbjct: 102 IEDVNRSHLRFTFRHRSSQDSK 123
>4f43_A Protelomerase; recombination-DNA complex; HET: DNA; 2.35A
{Agrobacterium tumefaciens} PDB: 4f41_A*
Length = 320
Score = 28.0 bits (61), Expect = 1.5
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 22 THSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEM 81
+ + +GL G TGR EV + F + + L +GQ
Sbjct: 132 EDCLKSSDPLMIGIGLI--GMTGRAPYEVFTQAEFSPAPYGKGVSKWSILF----NGQAK 185
Query: 82 SRAKTSVRRGQP 93
++ + G
Sbjct: 186 TKQGEGTKFGIT 197
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 27.6 bits (60), Expect = 2.7
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 63 RAPDTYVKLMLLSSSGQEMS--RAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVY 120
R+ TYV++ L G R K S NP++KE + +L V+V
Sbjct: 693 RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752
Query: 121 DRKSLKKKQLIGWFSL 136
+ + + +G +
Sbjct: 753 EEGN----KFLGHRII 764
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.382
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,478,294
Number of extensions: 132865
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 52
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)