RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6698
(170 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 111 bits (278), Expect = 1e-32
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
ELL+ L Y TT + + V+K H ++ D YVK+ L + + +S+ KT V++
Sbjct: 3 ELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAK-KRISKKKTHVKKC 61
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
PN +F E FVF + L ++++ V D + + ++IG LG + HW E
Sbjct: 62 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEG-SGGGHWKE 120
Query: 152 MCKVKGEQLARWHILC 167
+C Q+A+WH+LC
Sbjct: 121 ICDFPRRQIAKWHMLC 136
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 102 bits (254), Expect = 5e-29
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
++L+ L Y+ G + + +I+ H + D +VKL L G++ ++ KT +++
Sbjct: 3 KILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKK-AKHKTQIKKK 61
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP F E F + + L+ +L +SV+D K IG LG ++ E L HW E
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG-ERLKHWYE 120
Query: 152 MCKVKGEQLARWHIL 166
K K +++ RWH L
Sbjct: 121 CLKNKDKKIERWHQL 135
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 98.7 bits (245), Expect = 1e-27
Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
++ L Y T G++ + +++ + + + + D YVK+ L+ + G+ + + KT++++
Sbjct: 13 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN-GKRLKKKKTTIKKN 71
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP + E+F F+V + V +VV+V D + K IG +G NS + EL HW++
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS-TGAELRHWSD 130
Query: 152 MCKVKGEQLARWHIL 166
M +A+WH L
Sbjct: 131 MLANPRRPIAQWHTL 145
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 97.6 bits (242), Expect = 3e-27
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
EL L Y T G + + +IK S+ + + +T D YVK L+S G+ + + KTS+++
Sbjct: 8 ELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISE-GRRLKKRKTSIKKN 66
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
NP + E VF VA + +V L ++V D + ++IG +G + HW E
Sbjct: 67 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAE 126
Query: 152 MCKVKGEQLARWHILC 167
M + + WH L
Sbjct: 127 MLANPRKPVEHWHQLV 142
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 76.3 bits (187), Expect = 4e-19
Identities = 17/121 (14%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+L + L ++ ++ + ++ + R + YVK+ L + ++ +T +
Sbjct: 2 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFL-PDRSDKNKRRTKTVKK 60
Query: 92 QPNPLFKETFVFQ-VALFHLSDVTLVVSVYDRKSLKK--KQLIGWFSLGQNSTSEEELAH 148
P + +TF++ V + L ++++D+ +++ + +G + + ++ H
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120
Query: 149 W 149
W
Sbjct: 121 W 121
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 74.0 bits (181), Expect = 5e-18
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+L L Y+ ++ + +I+ + + M D YVK+ LL + + +T V R
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL---PDKKKKFETKVHRK 78
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNS-TSEEELAHWN 150
NP+F E F F+V L TLV++VYD K +IG F + N+ W
Sbjct: 79 TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 138
Query: 151 EM 152
++
Sbjct: 139 DL 140
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 65.1 bits (158), Expect = 1e-14
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 37 LSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPL 96
+ + + + V + + D YVKL L+ E + KT + NP
Sbjct: 8 IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ-KTKTIKCSLNPE 66
Query: 97 FKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEM-CKV 155
+ ETF FQ+ D L V ++D + +G S G + + + W ++ +
Sbjct: 67 WNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125
Query: 156 KGE 158
+GE
Sbjct: 126 EGE 128
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 63.8 bits (154), Expect = 4e-14
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 18 STDSTHSMLHGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSS 77
S+ S+ S +L L Y+ +F+ ++ D YV+ + + +
Sbjct: 2 SSGSSGS--WNQAPKLHYCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRT 56
Query: 78 GQEMSRAKTSVRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLG 137
G A+T++++ Q + ++E V +A L TL +++ + + G LG
Sbjct: 57 GSV--EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLG 114
Query: 138 QNSTS-EEELAHWNEM 152
+ TS A W E+
Sbjct: 115 LDGTSVPLGAAQWGEL 130
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 59.7 bits (144), Expect = 1e-12
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 7/132 (5%)
Query: 29 GVAELLLGLSYNGTTGRIFIEVIKGSHFRNV-AMTRAPDTYVKLMLLSSSGQEMSRAKTS 87
G+ L L YN + + + + + D Y+K+ +L ++ KT
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKV---KTR 63
Query: 88 VRRGQPNPLFKETFV-FQVALFHLSDVTLVVSVYDRKSLKKKQLIG--WFSLGQNSTSEE 144
V R +P F ETF + + + ++ L ++ + +IG L SE
Sbjct: 64 VLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG 123
Query: 145 ELAHWNEMCKVK 156
++ E+
Sbjct: 124 KMLMNREIISGP 135
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 56.5 bits (135), Expect = 2e-11
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
Query: 32 ELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRG 91
+ L Y + ++ + +++ D YVK+ LL + +T V R
Sbjct: 6 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL---PDRKKKFQTKVHRK 62
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNS---TSEEELAH 148
NP+F ETF F V L L+ L SVYD + LIG L +
Sbjct: 63 TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 122
Query: 149 WNEMCK 154
W ++ +
Sbjct: 123 WRDILE 128
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 55.5 bits (133), Expect = 3e-11
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 6/118 (5%)
Query: 45 RIFIEVIKGSHFRNVAMTR--APDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFV 102
R+ + +I G V + D V + + SR + NP + F
Sbjct: 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 103 FQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQL 160
F+V + L+ V V D S K IG ++ NS + + G+Q
Sbjct: 65 FEVTVPDLALVR--FMVEDYDSSSKNDFIGQSTIPWNSLKQGY--RHVHLLSKNGDQH 118
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 55.3 bits (132), Expect = 6e-11
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 27 HGGVAELLLGLSYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEM----- 81
H E+ L ++Y+ G + I +++ + D +VK+ LL GQ M
Sbjct: 3 HPITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60
Query: 82 ---SRAKTSVRRGQPNPLFKETFVFQVALFH-LSDVTLVVSVYDRKSLKKKQLIGWFSLG 137
+ +T + NP + +T +++ L TL V+V+D +G +
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120
Query: 138 QNSTS-EEELAHW 149
+STS + W
Sbjct: 121 LSSTSHLDNTPRW 133
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 42.3 bits (99), Expect = 2e-06
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 12/115 (10%)
Query: 48 IEVIKGSHFRNVAMTRAPDTYVKLML--LSSSGQEMSRAKTSVRRGQPNPLFKETFVFQV 105
I VI G R+ TYV++ L L + R K S NP++KE
Sbjct: 5 ITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFE 60
Query: 106 ALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQL 160
+ +L V+V + + + +G + + H + L
Sbjct: 61 KILMPELASLRVAVMEEGN----KFLGHRII--PINALNSGYHHLCLHSESNMPL 109
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 40.9 bits (95), Expect = 1e-05
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 38 SYNGTTGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLF 97
+G G + + ++ + D YV+L + + P +
Sbjct: 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC-----RTQDQKSNVAEGMGTTPEW 58
Query: 98 KETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSL 136
ETF+F V L ++D+ + +G ++
Sbjct: 59 NETFIFTV---SEGTTELKAKIFDKDVGTEDDAVGEATI 94
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 35.1 bits (80), Expect = 0.001
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 44 GRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFVF 103
++ I VI N P YV++ + + KT +P +K+
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTV------DGQSKKTEKCNNTNSPKWKQPLTV 59
Query: 104 QVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSL 136
V L V+ ++LK L+G +L
Sbjct: 60 IVTPVS----KLHFRVWSHQTLKSDVLLGTAAL 88
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 32.8 bits (74), Expect = 0.008
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 10/124 (8%)
Query: 43 TGRIFIEVIKGSHFRNVAMTRAPDTYVKLMLLSSSGQEMSRAKTSVRRGQPNPLFKETFV 102
G + ++V+K + + D + L R +T NP + + F
Sbjct: 5 VGILQVKVLKAADLLAADFSGKSDPFCLLE------LGNDRLQTHTVYKNLNPEWNKVFT 58
Query: 103 FQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNEMCKVKGEQLAR 162
F + H L V+V+D K +G ++ S + + + + EQ +
Sbjct: 59 FPIKDIH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ-PNCYVLKNKDLEQAFK 114
Query: 163 WHIL 166
I
Sbjct: 115 GVIY 118
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 30.6 bits (68), Expect = 0.050
Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 31/135 (22%)
Query: 43 TGRIFIEVIKGSHFRNVAMTRA-----------PDTYVKLMLLSSSGQEMSRAKTSVRRG 91
G + I++ + + A + D Y+ L + +T+ ++
Sbjct: 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN-----VDDSRIGQTATKQK 59
Query: 92 QPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELAHWNE 151
+P + + FV V ++ V+ + + ++ + E
Sbjct: 60 TNSPAWHDEFVTDVCNGRKIELA----VFHDAPIGYDDFVANCTI-----------QFEE 104
Query: 152 MCKVKGEQLARWHIL 166
+ + W L
Sbjct: 105 LLQNGSRHFEDWIDL 119
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
domain {Escherichia coli, PepA [TaxId: 562]}
Length = 325
Score = 26.6 bits (58), Expect = 1.7
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 93 PNPLFKETFVFQV-ALFHLSDVTLVVSVYDRKSLKKKQLIGWFSLGQNSTSEEELA--HW 149
PN Q L ++ V + +K+ + + ++GQ S +E ++ +
Sbjct: 17 PNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEY 76
Query: 150 NEMCKVKGEQLA 161
+
Sbjct: 77 KGNASEDARPIV 88
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.2 bits (55), Expect = 4.2
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 10 ILSLGRSDSTDSTHSMLHGGVAELLLGLS------YNGTTGRIFIEVIKGSHFRNVAMT- 62
ILS+ +D ++ AE +LG + + F EV + ++FR+
Sbjct: 77 ILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRV 136
Query: 63 RA-PDTYVKLMLLSSSGQEMSRAKTSVRRGQP 93
R +TY + SR K +V +P
Sbjct: 137 RVKVETY----------NDESRIKATVMDVKP 158
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 140
Score = 24.4 bits (53), Expect = 5.4
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 88 VRRGQPNPLFKETFVFQVALFHLSDVTLVVSVYDRKSLKK 127
+RRGQ F+ + L + +VS S
Sbjct: 31 LRRGQN---FQVLMIMNKGLGSNERLEFIVSTGPYPSESA 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.382
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,150
Number of extensions: 23822
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 20
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)