BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy67
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide,
Nmr, Ensemble Of Structures
Length = 160
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/123 (86%), Positives = 118/123 (95%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
++YLGCVEV+ESRGMQVCE+ALKVLR SRRRPVR +L+VSGDGLRVVDDETKGL+VDQTI
Sbjct: 34 VKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTI 93
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
EKVSFCAPDRNHE+GFSYICRDGTTRRWMCHGFLA K+SGERLSHAVGCAFA CLERKQ+
Sbjct: 94 EKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLERKQR 153
Query: 314 RDK 316
R +
Sbjct: 154 RTR 156
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 467 DPGERLSHAVGCAFAACLERKQKRDK 492
D GERLSHAVGCAFA CLERKQ+R +
Sbjct: 131 DSGERLSHAVGCAFAVCLERKQRRTR 156
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
Nak Peptide
Length = 135
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 104/117 (88%), Positives = 113/117 (96%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
++YLGCVEV+ESRGMQVCE+ALKVLR SRRRPVR +L+VSGDGLRVVDDETKGL+VDQTI
Sbjct: 19 VKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTI 78
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLER 310
EKVSFCAPDRNHE+GFSYICRDGTTRRWMCHGFLA K+SGERLSHAVGCAFA CLER
Sbjct: 79 EKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLER 135
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 467 DPGERLSHAVGCAFAACLER 486
D GERLSHAVGCAFA CLER
Sbjct: 116 DSGERLSHAVGCAFAVCLER 135
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 110/123 (89%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
+RYLG VEV ESRGM VCEDA+K L+ R+ V+++L+VS DGLRVVDD+TK L+VDQTI
Sbjct: 46 VRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTI 105
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
EKVSFCAPDRN +K FSYICRDGTTRRW+CH FLALK+SGERLSHAVGCAFAACLERKQ+
Sbjct: 106 EKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLERKQR 165
Query: 314 RDK 316
R+K
Sbjct: 166 REK 168
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 25/26 (96%)
Query: 467 DPGERLSHAVGCAFAACLERKQKRDK 492
D GERLSHAVGCAFAACLERKQ+R+K
Sbjct: 143 DSGERLSHAVGCAFAACLERKQRREK 168
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
Of Mouse Numb Protein
Length = 156
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 109/121 (90%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
++YLG VEV ESRGM +CEDA+K L+ + ++ V+A+L+VS DGLRVVD++TK L+VDQTI
Sbjct: 30 VKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTI 89
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
EKVSFCAPDRN ++ FSYICRDGTTRRW+CH F+A+K++GERLSHAVGCAFAACLERKQK
Sbjct: 90 EKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQK 149
Query: 314 R 314
R
Sbjct: 150 R 150
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/24 (95%), Positives = 23/24 (95%)
Query: 467 DPGERLSHAVGCAFAACLERKQKR 490
D GERLSHAVGCAFAACLERKQKR
Sbjct: 127 DTGERLSHAVGCAFAACLERKQKR 150
>pdb|3SO6|A Chain A, Crystal Structure Of The Ldl Receptor Tail In Complex With
Autosomal Recessive Hypercholesterolemia Ptb Domain
Length = 137
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVL----RNSRRRPVRAILYVSGDGLRVVDDETKGLMV 249
L+YLG V +G ++ A+K + + S ++ + L VS G+ + D T L+
Sbjct: 8 LKYLGMTLVERPKGEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDSLTSQLIE 67
Query: 250 DQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKES-GERLSHAVGCAFAACL 308
+ +I ++S+C D+ H+K F+YI + CH FL K + ++ V AF
Sbjct: 68 NVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQAFKVAF 127
Query: 309 E 309
E
Sbjct: 128 E 128
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 196 YLGCVEVYESRGMQVCEDALKVLRNSRRRPVRA-------ILYVSGDGLRVVDDETKGLM 248
YLG + + E RG + +DA +R + ++ IL VS G++ +D K ++
Sbjct: 25 YLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSAKGVKFIDATNKNII 84
Query: 249 VDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLAL 289
+ I +S A D F+YI +D + CH F A
Sbjct: 85 AEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAF 125
>pdb|1OQN|A Chain A, Crystal Structure Of The Phosphotyrosine Binding Domain
(Ptb) Of Mouse Disabled 1 (Dab1)
pdb|1OQN|B Chain B, Crystal Structure Of The Phosphotyrosine Binding Domain
(Ptb) Of Mouse Disabled 1 (Dab1)
Length = 159
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 24/142 (16%)
Query: 195 RYLGCVEVYESRGMQVCEDALKVL-------RNSRRRPVRAILYVSGDGLRVVDDETKGL 247
+ +G EV +RG ++C+D++ L R+ + L +S G+++ D++T L
Sbjct: 21 KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGAL 80
Query: 248 MVDQTIEKVSFCAPDRNHEKGFSYIC-RDGTTRRWMCHGFLALK--ESGERLSHAVGCAF 304
+ ++S+ A D + F Y+C ++G H F+A+K ++ E + + F
Sbjct: 81 QHHHAVHEISYIAKDITDHRAFGYVCGKEGN------HRFVAIKTAQAAEPVILDLRDLF 134
Query: 305 AAC--------LERKQKRDKEC 318
LE+K ++DK+C
Sbjct: 135 QLIYELKQREELEKKAQKDKQC 156
>pdb|1NTV|A Chain A, Crystal Structure Of The Disabled-1 (Dab1) Ptb Domain-
Apoer2 Peptide Complex
pdb|1NU2|A Chain A, Crystal Structure Of The Murine Disabled-1 (Dab1) Ptb
Domain-Apoer2 Peptide-Pi-4,5p2 Ternary Complex
Length = 152
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 195 RYLGCVEVYESRGMQVCEDALKVL-------RNSRRRPVRAILYVSGDGLRVVDDETKGL 247
+ +G EV +RG ++C+D++ L R+ + L +S G+++ D++T L
Sbjct: 23 KLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGAL 82
Query: 248 MVDQTIEKVSFCAPDRNHEKGFSYIC-RDGTTRRWMCHGFLALK--ESGERLSHAVGCAF 304
+ ++S+ A D + F Y+C ++G H F+A+K ++ E + + F
Sbjct: 83 QHHHAVHEISYIAKDITDHRAFGYVCGKEGN------HRFVAIKTAQAAEPVILDLRDLF 136
Query: 305 AACLERKQKRDKE 317
E KQ+ + E
Sbjct: 137 QLIYELKQREELE 149
>pdb|1M7E|A Chain A, Crystal Structure Of The Phosphotyrosine Binding
Domain(Ptb) Of Mouse Disabled 2(Dab2):implications For
Reeling Signaling
pdb|1M7E|B Chain B, Crystal Structure Of The Phosphotyrosine Binding
Domain(Ptb) Of Mouse Disabled 2(Dab2):implications For
Reeling Signaling
pdb|1M7E|C Chain C, Crystal Structure Of The Phosphotyrosine Binding
Domain(Ptb) Of Mouse Disabled 2(Dab2):implications For
Reeling Signaling
pdb|1P3R|A Chain A, Crystal Structure Of The Phosphotyrosin Binding
Domain(Ptb) Of Mouse Disabled 1(Dab1)
pdb|1P3R|B Chain B, Crystal Structure Of The Phosphotyrosin Binding
Domain(Ptb) Of Mouse Disabled 1(Dab1)
pdb|1P3R|C Chain C, Crystal Structure Of The Phosphotyrosin Binding
Domain(Ptb) Of Mouse Disabled 1(Dab1)
Length = 160
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 195 RYLGCVEVYESRGMQVCEDALKVL-------RNSRRRPVRAILYVSGDGLRVVDDETKGL 247
+ +G +V ++RG ++ +D++ L R+ + R + +S G++++D++T +
Sbjct: 22 KLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIIDEKTGVI 81
Query: 248 MVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALK 290
+ + K+SF A D + F Y+C G + H F A+K
Sbjct: 82 EHEHPVNKISFIARDVTDNRAFGYVC-GGEGQ----HQFFAIK 119
>pdb|3D8D|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain
pdb|3D8D|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain
pdb|3D8E|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|C Chain C, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|D Chain D, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8F|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|C Chain C, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|D Chain D, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
Length = 148
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 194 LRYLGCVEVYE--------SRGMQVCEDALKVLRNSRRRPVRA--------ILYVSGDGL 237
+R LG VE+ E S + C L +N+ P+ +L + + L
Sbjct: 7 VRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETL 66
Query: 238 RVVDDETKGLMVDQTIEKVSFCAPDRN--HEKGFSYICRDGTTRRWMCHGF 286
++V+ +++ L+ Q I + R+ E+ F+Y+ RD T+ CH F
Sbjct: 67 KLVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVF 117
>pdb|1YQQ|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|D Chain D, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|E Chain E, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|F Chain F, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
Length = 277
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 170 LCYLGCVEVYESRGMQVCEDALKVLRYLGC 199
+C G YE RGM + DA++ + LGC
Sbjct: 80 VCMKGRGHFYEGRGMTIMTDAIRTFKLLGC 109
>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1267
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 235 DGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSY-ICRDGT 277
DGL ++D T G + +TI+K+ E G+ Y I DGT
Sbjct: 735 DGLMIIDGNTAGKVNSETIQKMLELISKYGEEFGWKYDIAYDGT 778
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,409,135
Number of Sequences: 62578
Number of extensions: 552677
Number of successful extensions: 1085
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 33
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)