RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy67
(526 letters)
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 150 bits (380), Expect = 3e-43
Identities = 95/123 (77%), Positives = 110/123 (89%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
+RYLG VEV ESRGM VCEDA+K L+ R+ V+++L+VS DGLRVVDD+TK L+VDQTI
Sbjct: 46 VRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTI 105
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
EKVSFCAPDRN +K FSYICRDGTTRRW+CH FLALK+SGERLSHAVGCAFAACLERKQ+
Sbjct: 106 EKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLERKQR 165
Query: 314 RDK 316
R+K
Sbjct: 166 REK 168
Score = 36.1 bits (83), Expect = 0.010
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 463 KSNGDPGERLSHAVGCAFAACLERKQKRDK 492
+ D GERLSHAVGCAFAACLERKQ+R+K
Sbjct: 139 LALKDSGERLSHAVGCAFAACLERKQRREK 168
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 127 bits (320), Expect = 5e-35
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRR----RPVRAILYVSGDGLRVVDDETKGLMV 249
L+YLG V +G ++ A+K + + + + + L VS G+ + D T L+
Sbjct: 8 LKYLGMTLVERPKGEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDSLTSQLIE 67
Query: 250 DQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKES-GERLSHAVGCAFAACL 308
+ +I ++S+C D+ H+K F+YI + CH FL K + ++ V AF
Sbjct: 68 NVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQAFKVAF 127
Query: 309 ERKQKRDKE 317
E Q
Sbjct: 128 EFWQVSLVP 136
Score = 27.1 bits (60), Expect = 7.5
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 464 SNGDPGERLSHAVGCAFAACLERKQKRDKE 493
+ + ++ V AF E Q
Sbjct: 107 TKRKVAQAVTLTVAQAFKVAFEFWQVSLVP 136
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 122 bits (306), Expect = 1e-32
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 181 SRGMQVCEDALK----VLRYLGCVEVYESRGMQVCEDALKVLRNSRR-----RPVRAILY 231
RG + ED++ ++R+LG +EV V + ++ + +R R + L
Sbjct: 16 PRGSHMTEDSILHQLFIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLL 75
Query: 232 VSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTR-----RWMCHGF 286
V+ D L+++D +T+ + + V A + +++ F ++ R + R +C+ F
Sbjct: 76 VTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIF 135
Query: 287 LALKESGERLSHAVGCAFAACLERKQKRDKE 317
+ E GE++ +VG A L + R
Sbjct: 136 ESNNE-GEKICDSVGLAKQIALHAELDRRAS 165
Score = 27.3 bits (60), Expect = 10.0
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 467 DPGERLSHAVGCAFAACLERKQKRDKE 493
+ GE++ +VG A L + R
Sbjct: 139 NEGEKICDSVGLAKQIALHAELDRRAS 165
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 120 bits (301), Expect = 4e-32
Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVL-------RNSRRRPVRAILYVSGDGLRVVDDETKG 246
+ +G +V ++RG ++ +D++ L R+ + R + +S G++++D++T
Sbjct: 21 AKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIIDEKTGV 80
Query: 247 LMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAA 306
+ + + K+SF A D + F Y+C + + E L + F
Sbjct: 81 IEHEHPVNKISFIARDVTDNRAFGYVCGG--EGQHQFFAIKT-GQQAEPLVVDLKDLFQV 137
Query: 307 CLERKQKRDKE 317
K+K + +
Sbjct: 138 IYNVKKKEEDK 148
Score = 29.6 bits (66), Expect = 1.5
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 467 DPGERLSHAVGCAFAACLERKQKRDKE 493
E L + F K+K + +
Sbjct: 122 QQAEPLVVDLKDLFQVIYNVKKKEEDK 148
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 119 bits (299), Expect = 6e-32
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSR-------RRPVRAILYVSGDGLRVVDDETKG 246
+ +G EV +RG ++C+D++ L+ + L +S G+++ D++T
Sbjct: 22 AKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGA 81
Query: 247 LMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAA 306
L + ++S+ A D + F Y+C R ++ E + + F
Sbjct: 82 LQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHR--FVAIKT-AQAAEPVILDLRDLFQL 138
Query: 307 CLERKQKRDKE 317
E KQ+ + E
Sbjct: 139 IYELKQREELE 149
Score = 31.8 bits (72), Expect = 0.23
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 466 GDPGERLSHAVGCAFAACLERKQKRDKE 493
E + + F E KQ+ + E
Sbjct: 122 AQAAEPVILDLRDLFQLIYELKQREELE 149
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 116 bits (292), Expect = 4e-31
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRR--RPVRAILYVSGDGLRVVDDETKGLMVDQ 251
+ YLG V V + G+ V AL+ + +S + + + V+ L ++ +T+ ++ +
Sbjct: 12 VYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQTEAVLGEC 71
Query: 252 TIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERK 311
+ +SF A R+ F++I G + CH F + LS AV AAC+ R
Sbjct: 72 RVRFLSFLAVGRD-VHTFAFIMAAGPA-SFCCHMFWCEPNAAS-LSEAVQ---AACMLRY 125
Query: 312 QK 313
QK
Sbjct: 126 QK 127
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 115 bits (288), Expect = 3e-30
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRR-----RPVRAILYVSGDGLRVVDDETKGLM 248
+R+LG +EV V + ++ + +R R + L V+ D L+++D +T+
Sbjct: 20 VRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLLVTCDCLKLIDPQTQVTR 79
Query: 249 VDQTIEKVSFCAPDRNHEKGFSYICRDGTTR-----RWMCHGFLALKESGERLSHAVGCA 303
+ + V A + +++ F ++ R + R +C+ F + E GE++ +VG A
Sbjct: 80 LTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNE-GEKICDSVGLA 138
Query: 304 FAACLERKQKRDKE 317
L + R
Sbjct: 139 KQIALHAELDRRAS 152
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta
structure, phosphotyrosine binding domain; 2.20A {Homo
sapiens} PDB: 3d8e_A 3d8f_A
Length = 148
Score = 104 bits (261), Expect = 8e-27
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 195 RYLGCVEVYE--------SRGMQVCEDALKVLRNSRRRPVRA--------ILYVSGDGLR 238
R LG VE+ E S + C L +N+ P+ +L + + L+
Sbjct: 8 RSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDETLK 67
Query: 239 VVDDETKGLMVDQTIEK--VSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLA 288
+V+ +++ L+ Q I V D E+ F+Y+ RD T+ CH F
Sbjct: 68 LVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFRC 119
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member
2; phosphotyrosine-interaction domain, amyloid disease,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.2
PDB: 2roz_B
Length = 136
Score = 104 bits (260), Expect = 9e-27
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRP--VRAILYVSGDGLRVVDDETKG-LMVD 250
++YLG + V GM A++ L S + + V+ + V+ ++ + ++V+
Sbjct: 20 VQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEKNEEEVLVE 79
Query: 251 QTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAA 306
+ +SF ++ F++I D +R+ CH F + +S AV A +
Sbjct: 80 CRVRFLSFMGVGKDV-HTFAFIM-DTGNQRFECHVFWCEPNAAN-VSEAVQAACSG 132
>2dyq_A Amyloid beta A4 precursor protein-binding family 3;
phosphotyrosine-interaction domain (PTB/PID alzheimer'S
disease, structural genomics, NPPSFA; 3.10A {Homo
sapiens}
Length = 144
Score = 104 bits (261), Expect = 1e-26
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRP--VRAILYVSGDGLRVV-----DDETKG 246
Y+G + V ++ GM V +A+ L R V +L VS + +
Sbjct: 20 ALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEE 79
Query: 247 LMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAA 306
+ + V+F R+ F I D + + C F +G LS AV AA
Sbjct: 80 PLWQCPVRLVTFIGVGRD-PHTFGLI-ADLGRQSFQCAAFWCQPHAGG-LSEAVQ---AA 133
Query: 307 CLERKQK 313
C+ + QK
Sbjct: 134 CMVQYQK 140
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor
protein-binding family B member...; chimera, Fe65L, PID
domain, amyloid precursor protein; NMR {Mus musculus}
PDB: 2yt1_A
Length = 176
Score = 103 bits (258), Expect = 5e-26
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRP--VRAILYVSGDGLRVVDDETKG-LMVD 250
++YLG + V GM A++ L S + + V+ + V+ ++ + ++V+
Sbjct: 66 VQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEKNEEEVLVE 125
Query: 251 QTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCA 303
+ +SF ++ F++I D +R+ CH F + +S AV A
Sbjct: 126 CRVRFLSFMGVGKDV-HTFAFIM-DTGNQRFECHVFWCEPNAAN-VSEAVQAA 175
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and
amyloid beta A4 protein...; chimera, Fe65L, PID domain,
amyloid precursor protein; NMR {Mus musculus}
Length = 185
Score = 100 bits (249), Expect = 9e-25
Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRP--VRAILYVSGDGLRVVDDETKG-LMVD 250
++YLG + V GM A++ L S + + V+ + V+ ++ + ++V+
Sbjct: 20 VQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEKNEEEVLVE 79
Query: 251 QTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLER 310
+ +SF ++ F++I D +R+ CH F + +S AV A +
Sbjct: 80 CRVRFLSFMGVGKDV-HTFAFIM-DTGNQRFECHVFWCEPNAAN-VSEAVQAACSGPSSG 136
Query: 311 KQKR 314
+ R
Sbjct: 137 IEGR 140
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB
domain, chimera protein, protein transport; HET: IPA
GOL; 1.90A {Rattus norvegicus}
Length = 162
Score = 99.1 bits (246), Expect = 2e-24
Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRR--------RPVRAILYVSGDGLRVVDDETK 245
YLG ++ + ++ R L++S ++V++ +T+
Sbjct: 13 ANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFISTQRIKVLNADTQ 72
Query: 246 GLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFA 305
M+D + +S+ A N + + + +CH F + E + ++ ++G AF+
Sbjct: 73 EPMMDHPLRTISYIADIGNIVVLMARRRMPRSQYKMICHVFES--EDAQLIAQSIGQAFS 130
Query: 306 ACLERKQKRDKE 317
+ + +
Sbjct: 131 VAYQEFLRANGI 142
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 97.6 bits (242), Expect = 2e-23
Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 12/154 (7%)
Query: 168 FALCYLGCVEVYES-------RGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLR- 219
+ + Y+GCVEV +S QV +A+ ++ +R + C L +
Sbjct: 52 YLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILG 111
Query: 220 --NSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKG-FSYICRDG 276
N + + L VS L ++ + K ++ + ++ +SF + +Y+ +D
Sbjct: 112 RSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDP 171
Query: 277 TTRRWMCHGFLALKESGERLSHAVGCAFAACLER 310
+R CH + + + +G AF ++
Sbjct: 172 VNQR-ACHILECPEGLAQDVISTIGQAFELRFKQ 204
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 75.7 bits (185), Expect = 3e-16
Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 39/159 (24%)
Query: 194 LRYLGCVEVYESRG------MQVCEDALKVLRNSRRRP--------------VRAILYVS 233
YLG ++ + M ++A+ ++ +++ L++
Sbjct: 12 ANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDLFIL 71
Query: 234 GDGLRVVDDETKGLMVDQTIEKVSFCAPDRNH----------------EKGFSYICRDG- 276
++V++ +T+ M+D + +S+ A N S+ +DG
Sbjct: 72 TQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEASHPSQDGK 131
Query: 277 TTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRD 315
+ +CH F + E + ++ ++G AF+ + + +
Sbjct: 132 RQYKMICHVFES--EDAQLIAQSIGQAFSVAYQEFLRAN 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 4e-08
Identities = 87/541 (16%), Positives = 146/541 (26%), Gaps = 187/541 (34%)
Query: 65 RSFRDSFRRRKDQHMPESSKPHQWQSDEASVRAG-TCYFHVKVCLGKVKQGEEHSVFMRF 123
F + + D H + + + + Y ++ + + +S R
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR- 147
Query: 124 GYRPSGDVLHLSASAFK-YL-----GCVEVY--ESRGMQVCEDALKVVLIYMFALCYLGC 175
+ + G + Y E R +Y
Sbjct: 148 ---------AVGEGNAQLVAIFGGQGNTDDYFEELRD------------LY--------- 177
Query: 176 VEVYESRGMQVCEDALKVLRYL----GCVEVYESRGMQVCEDALKVLRNSRRRPVRAIL- 230
+ Y + + + + L L E ++G+ + L+ L N P + L
Sbjct: 178 -QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLENPSNTPDKDYLL 232
Query: 231 --YVSGDGLRVVDDETKGLMVDQTIEKVSFC-APDRNHEKGFSYICRDGTTRRWMCHG-- 285
+S + G++ Q V + SY+ G T H
Sbjct: 233 SIPISCPLI--------GVI--QLAHYVVTAKLLGFTPGELRSYLK--GAT----GHSQG 276
Query: 286 -----FLALKESGERL----SHAVGCAF---AACLERKQKRDKECGVTMNFDTTNSTFTR 333
+A +S E A+ F C E +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE--------------------AYPN 316
Query: 334 SGSFRQPTLTDRIIDGEVDMPVSP-LS---PPPNSVPTTPGSVKPPNPHAIERPHAPIPL 389
+ S L D + + E +P SP LS V V N H I L
Sbjct: 317 T-SLPPSILEDSLENNE-GVP-SPMLSISNLTQEQVQDY---VNKTNSHLPAGKQVEISL 370
Query: 390 L--QRQ----G---SFRGF----------SQLNQA-SPF-KRQLSLRIGDLP------SN 422
+ + G S G S L+Q+ PF +R+L LP S+
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 423 LERTRLQQLSLTQANH-------ANNIA-PLIYLKTPVSPIPESISPLKSNGDPGERL-- 472
L L A+ NN++ ++ PV D G L
Sbjct: 431 L---------LVPASDLINKDLVKNNVSFNAKDIQIPV----------YDTFD-GSDLRV 470
Query: 473 -SHAVGCAFAACLERKQKRDKECGVTMNFDTTNST-------FTRSGSFRQPTLTDRIID 524
S ++ C+ R + ++TT F G+ LT R D
Sbjct: 471 LSGSISERIVDCIIRLP---------VKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 525 G 525
G
Sbjct: 522 G 522
Score = 36.2 bits (83), Expect = 0.036
Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 81/204 (39%)
Query: 125 YRPSGDVLHL-----------SASAFKYLGCVEVYESRGMQVCEDALKVVLIYMF----- 168
+R +L +AF+ L +S+G+ + F
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDL------KSKGLIPADAT--------FAGHSL 1764
Query: 169 ----ALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRG--MQVCEDALKVLRNSR 222
AL L +V M + E ++V+ Y RG MQV ++ R++
Sbjct: 1765 GEYAALASLA--DV-----MSI-ESLVEVVFY---------RGMTMQVAVPRDELGRSNY 1807
Query: 223 R----RPVRAILYVSGDGLR-VVD---DETKGLMVDQTIEKVSFCAPDRNHEKGFSYICR 274
P R S + L+ VV+ T L +E V++ N E Y+
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWL-----VEIVNY-----NVE-NQQYVA- 1855
Query: 275 DGTTRRWMCHGFLALKESGERLSH 298
G R AL L+
Sbjct: 1856 AGDLR--------ALDTVTNVLNF 1871
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 3e-04
Identities = 50/372 (13%), Positives = 100/372 (26%), Gaps = 98/372 (26%)
Query: 2 LFGLRKVNEERRRVAWTDSGGVSETAFDGGKTNICRRAVSRTSGSLMRPLYG------PV 55
+ + R+ WT + + ++ V ++R Y
Sbjct: 54 IIMSKDAVSGTLRLFWT---------LLSKQEEMVQKFV----EEVLRINYKFLMSPIKT 100
Query: 56 PAISMSRPRRSFRDSFRRRKDQHMPESSKPHQWQSDEASVRAGTCYFHVKVCLGKVKQGE 115
S R + + R + + + + V Y ++ L +++ +
Sbjct: 101 EQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYN-------VSRLQPYLKLRQALLELRPAK 151
Query: 116 EHSVF-MRFGYRPSG-DVLHLSASAFKYLGCV---EVY-ESRGMQVCEDALKVVLIYMFA 169
+ + G SG + L + C +++ + + + L +
Sbjct: 152 NVLIDGV-LG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---LEMLQK 204
Query: 170 LCYL----GCVEV-YESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRN---- 220
L Y + S LR L + YE + L VL N
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--------NCLLVLLNVQNA 256
Query: 221 ---------------SRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIE---KVSFCAPD 262
+R + V L + +D + L D+ K C P
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 263 -------RNHEKGFSYI---CRDGTTR--RWMCHGFLALKESGERLSHAVGCAFAACLER 310
+ + S I RDG W + ++L+ + + LE
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNW-------KHVNCDKLTTIIE-SSLNVLEP 368
Query: 311 KQKRD--KECGV 320
+ R V
Sbjct: 369 AEYRKMFDRLSV 380
Score = 40.6 bits (94), Expect = 0.001
Identities = 62/448 (13%), Positives = 118/448 (26%), Gaps = 153/448 (34%)
Query: 121 MRFGYRPSGDVLHLSASAF-KYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVY 179
++ Y+ D+L + AF C +V +D K +L +
Sbjct: 14 HQYQYK---DILSVFEDAFVDNFDCKDV---------QDMPKSILSKE------EIDHII 55
Query: 180 ESRGMQVCEDALKVLRYLGCVEVYESRGMQV-CEDALKV--------LRNSRRRPVRAIL 230
S+ + LR + + +Q E+ L++ ++ +R+P
Sbjct: 56 MSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----- 105
Query: 231 YVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALK 290
S ++ + +Q K N + R +L L+
Sbjct: 106 --SMMTRMYIEQRDRLYNDNQVFAK-------YN-------VSRL--------QPYLKLR 141
Query: 291 ESGERLSHA--------VGC-----AFAACLERKQKRDKECGVT-MNFDTTNSTFTRSGS 336
++ L A +G A CL K + + + +N NS +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVL 199
Query: 337 FRQPTLTDRIIDGEVDMPVSPLSPPPNSVPTTPGSVK---------PPNPHA------IE 381
L +I D + S +++ S++ P + ++
Sbjct: 200 EMLQKLLYQI-----DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 382 RP--------HAPIPLLQRQGS------------------FRGFSQLNQASPFKRQLSLR 415
I L R + S + L R
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 416 IGDLPSNLERTRLQQLSLTQANHANNIAPLIYLKTPVSPIPESISPLKSNGDP-----GE 470
DLP P +S I ESI + D +
Sbjct: 315 PQDLPR----------------EVLTTNPRR-----LSIIAESIRDGLATWDNWKHVNCD 353
Query: 471 RLSHAVGCAFAACLERKQKRD--KECGV 496
+L+ + + LE + R V
Sbjct: 354 KLTTIIE-SSLNVLEPAEYRKMFDRLSV 380
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1,
phosphotyrosine binding domain, PTB, TNS2, KIAA1075,
struct genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A
Length = 157
Score = 40.0 bits (93), Expect = 5e-04
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 196 YLGCVEVYESRGMQVCEDALKVL--RNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQ-T 252
YL VE G Q A + R P VS G+ + D++ K
Sbjct: 20 YLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITLTDNQRKLFFRRHYP 79
Query: 253 IEKVSFCAPDRNH----------EKGFSYICRD-GTTRRWMCHGF 286
+ ++F + D K F ++ + G+ +CH F
Sbjct: 80 VNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLF 124
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus
gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Length = 134
Score = 38.8 bits (90), Expect = 8e-04
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 190 ALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAI--LYVSGDGLRVVDDETKGL 247
A VL ++ VE+ G Q A+ + P I VS G+ + D++ K
Sbjct: 3 ACNVL-FINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRKLF 61
Query: 248 MV-DQTIEKVSFCAPD-RNHE----------KGFSYICRD-GTTRRWMCHGF 286
+ V+FC D + + K F ++ R G+T +CH F
Sbjct: 62 FRRHYPLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLF 113
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein
1; structural genomics, signal transduction,
phosphorylation, PTB domain, NPPSFA; 1.90A {Mus
musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Length = 140
Score = 37.3 bits (86), Expect = 0.003
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 7/126 (5%)
Query: 196 YLGCVEVYESRGMQVCEDALKVLR----NSRRRPVRAILYVSGDGLRVVDDETKGLMVD- 250
+L + E G+ EDA + L R +L VS + ++D +K +
Sbjct: 15 HLVTFCLGEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTLLDPVSKEELESY 74
Query: 251 --QTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACL 308
I + P +C++ + H F L E + + A
Sbjct: 75 PLDAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQGALQNYR 134
Query: 309 ERKQKR 314
+ +R
Sbjct: 135 SGRGER 140
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 39.2 bits (90), Expect = 0.003
Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 24/135 (17%)
Query: 195 RYLGCVEVYESRGM---------QVCEDALKVLRNSRRRPVRA------------ILYVS 233
YLG ++ R Q +K ++ + + +A L++S
Sbjct: 14 NYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFIS 73
Query: 234 GDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWM---CHGFLALK 290
++V++ +T+ M+D + +S+ A N + + + G K
Sbjct: 74 TQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGK 133
Query: 291 ESGERLSHAVGCAFA 305
+ + + H A
Sbjct: 134 KQYKMICHVFESEDA 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.062
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 14/43 (32%)
Query: 212 EDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIE 254
+ ALK L+ S + LY DD L + T+E
Sbjct: 19 KQALKKLQASLK------LYA--------DDSAPALAIKATME 47
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 31.0 bits (69), Expect = 0.36
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 346 IIDGEVDMPVSPLSPPPNSVPTTPGSVKPPNPHAIERPHAPIPLLQ 391
++ +V P PTT PP H P P ++
Sbjct: 88 LVKNQVSPSAPAAPVPTPICPTTTPPPPPPPS---PEAHVPPPYVE 130
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 28.4 bits (64), Expect = 6.3
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 6/46 (13%)
Query: 237 LRVVDDETKGLMVDQTIEKVSFC---APDRNHEKGFSYICRDGTTR 279
+ + + + PD Y+ +D T R
Sbjct: 203 IEFKRISDPSQTIADKVSGTNGEIVWGPD---HTSLFYVTKDETLR 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,999,803
Number of extensions: 479139
Number of successful extensions: 1097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 45
Length of query: 526
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 428
Effective length of database: 3,965,535
Effective search space: 1697248980
Effective search space used: 1697248980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)