RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy67
(526 letters)
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Length = 156
Score = 132 bits (333), Expect = 3e-37
Identities = 88/124 (70%), Positives = 109/124 (87%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
++YLG VEV ESRGM +CEDA+K L+ + ++ V+A+L+VS DGLRVVD++TK L+VDQTI
Sbjct: 30 VKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTI 89
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
EKVSFCAPDRN ++ FSYICRDGTTRRW+CH F+A+K++GERLSHAVGCAFAACLERKQK
Sbjct: 90 EKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQK 149
Query: 314 RDKE 317
R
Sbjct: 150 RSGP 153
Score = 35.4 bits (81), Expect = 0.006
Identities = 23/31 (74%), Positives = 24/31 (77%)
Query: 463 KSNGDPGERLSHAVGCAFAACLERKQKRDKE 493
+ D GERLSHAVGCAFAACLERKQKR
Sbjct: 123 MAVKDTGERLSHAVGCAFAACLERKQKRSGP 153
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 135
Score = 130 bits (327), Expect = 1e-36
Identities = 104/117 (88%), Positives = 113/117 (96%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
++YLGCVEV+ESRGMQVCE+ALKVLR SRRRPVR +L+VSGDGLRVVDDETKGL+VDQTI
Sbjct: 19 VKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTI 78
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLER 310
EKVSFCAPDRNHE+GFSYICRDGTTRRWMCHGFLA K+SGERLSHAVGCAFA CLER
Sbjct: 79 EKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLER 135
Score = 28.8 bits (64), Expect = 0.87
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 463 KSNGDPGERLSHAVGCAFAACLER 486
+ D GERLSHAVGCAFA CLER
Sbjct: 112 LACKDSGERLSHAVGCAFAVCLER 135
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 148
Score = 110 bits (276), Expect = 3e-29
Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 194 LRYLGCVEVYESRGMQVCEDAL-------KVLRNSRRRPVRAILYVSGDGLRVVDDETKG 246
+ +G +V ++RG ++ +D++ R+ + R + +S G++++D++T
Sbjct: 21 AKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIIDEKTGV 80
Query: 247 LMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAA 306
+ + + K+SF A D + F Y+C + + E L + F
Sbjct: 81 IEHEHPVNKISFIARDVTDNRAFGYVCGGEGQHQ--FFAIKT-GQQAEPLVVDLKDLFQV 137
Query: 307 CLERKQKRDKE 317
K+K + +
Sbjct: 138 IYNVKKKEEDK 148
Score = 30.7 bits (69), Expect = 0.19
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 467 DPGERLSHAVGCAFAACLERKQKRDKE 493
E L + F K+K + +
Sbjct: 122 QQAEPLVVDLKDLFQVIYNVKKKEEDK 148
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 152
Score = 103 bits (259), Expect = 8e-27
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVL-------RNSRRRPVRAILYVSGDGLRVVDDETKG 246
+ +G EV +RG ++C+D++ L R+ + L +S G+++ D++T
Sbjct: 22 AKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGA 81
Query: 247 LMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAA 306
L + ++S+ A D + F Y+C R ++ E + + F
Sbjct: 82 LQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHR--FVAIKT-AQAAEPVILDLRDLFQL 138
Query: 307 CLERKQKRDKE 317
E KQ+ + E
Sbjct: 139 IYELKQREELE 149
Score = 33.5 bits (76), Expect = 0.025
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 467 DPGERLSHAVGCAFAACLERKQKRDKE 493
E + + F E KQ+ + E
Sbjct: 123 QAAEPVILDLRDLFQLIYELKQREELE 149
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 129
Score = 102 bits (255), Expect = 2e-26
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRR----PVRAILYVSGDGLRVVDDETKGLMV 249
+ +L + E G+ EDA + L + +L VS + ++D +K +
Sbjct: 8 VNHLVTFCLGEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTLLDPVSKEELE 67
Query: 250 DQTIEKVSFCA---PDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAA 306
++ + C P +C++ + H F L E + + A
Sbjct: 68 SYPLDAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQGALQN 127
Query: 307 C 307
Sbjct: 128 Y 128
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 95.9 bits (238), Expect = 1e-23
Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 12/154 (7%)
Query: 168 FALCYLGCVEVYES-------RGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVL-- 218
+ + Y+GCVEV +S QV +A+ ++ +R + C L +
Sbjct: 36 YLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILG 95
Query: 219 -RNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKG-FSYICRDG 276
N + + L VS L ++ + K ++ + ++ +SF + +Y+ +D
Sbjct: 96 RSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDP 155
Query: 277 TTRRWMCHGFLALKESGERLSHAVGCAFAACLER 310
+R CH + + + +G AF ++
Sbjct: 156 VNQR-ACHILECPEGLAQDVISTIGQAFELRFKQ 188
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding
family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 136
Score = 83.2 bits (205), Expect = 1e-19
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNS--RRRPVRAILYVSGDGLRVVDDET-KGLMVD 250
++YLG + V GM A++ L S + + V+ + V+ ++ + ++V+
Sbjct: 20 VQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEKNEEEVLVE 79
Query: 251 QTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFA 305
+ +SF ++ F++I G +R+ CH F + +S AV A +
Sbjct: 80 CRVRFLSFMGVGKDV-HTFAFIMDTG-NQRFECHVFWCEPNAAN-VSEAVQAACS 131
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId:
9606]}
Length = 147
Score = 82.3 bits (203), Expect = 3e-19
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 14/112 (12%)
Query: 195 RYLGCVEVYESRGMQVCEDALKVL--RNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQ- 251
YL VE G Q A + R P VS G+ + D++ K
Sbjct: 17 LYLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITLTDNQRKLFFRRHY 76
Query: 252 TIEKVSFCA----------PDRNHEKGFSYICRD-GTTRRWMCHGFLALKES 292
+ ++F + PD K F ++ + G+ +CH F L
Sbjct: 77 PVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPD 128
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 77.8 bits (191), Expect = 1e-17
Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 45/150 (30%)
Query: 195 RYLGCVEVYESRG------MQVCEDALKVLRNSR--------------RRPVRAILYVSG 234
YLG ++ + M ++A+ ++ ++ + L++
Sbjct: 13 NYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDLFILT 72
Query: 235 DGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRR-------------- 280
++V++ +T+ M+D + +S+ A N + R R
Sbjct: 73 QRIKVLNADTQETMMDHPLRTISYIADIGNI---VVLMARRRIPRSNSQENVEASHPSQD 129
Query: 281 ------WMCHGFLALKESGERLSHAVGCAF 304
+CH F + E + ++ ++G AF
Sbjct: 130 GKRQYKMICHVFES--EDAQLIAQSIGQAF 157
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 76.6 bits (188), Expect = 2e-17
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 15/111 (13%)
Query: 195 RYLGCVEVYESRGMQVCEDALKVLRNSRR--RPVRAILYVSGDGLRVVDDETKGLMVDQT 252
++ VE+ G Q A+ + VS G+ + D++ K
Sbjct: 6 LFINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRKLFFRRHY 65
Query: 253 -IEKVSFCA-----------PDRNHEKGFSYICRD-GTTRRWMCHGFLALK 290
+ V+FC K F ++ R G+T +CH F L
Sbjct: 66 PLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLFAELD 116
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 70
Score = 26.5 bits (59), Expect = 1.7
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 180 ESRG-MQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRR 224
ES G + +DA K L +V + ++ +DA K + +++R+
Sbjct: 17 ESIGVGSLSDDAAKEL----AEDV-SIKLKRIVQDAAKFMNHAKRQ 57
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 26.6 bits (59), Expect = 2.2
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 184 MQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRA 228
++ + R V + V DA+ +++R+ V A
Sbjct: 25 KRISGLIYEETR-----GVLKVFLENVIRDAVTYTEHAKRKTVTA 64
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 27.1 bits (60), Expect = 2.9
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 338 RQPTLTDRIIDGEVDMPVSPLSPPPNSVPTTPGSVKPPNPHAIERPHAPIP 388
R + + ++ +V P PTT PP H P P
Sbjct: 80 RVVEIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPE---AHVPPP 127
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 27.1 bits (60), Expect = 2.9
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 211 CEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSF 258
++ L+ R + AI+ VD + + ++++ ++ +S
Sbjct: 9 LKETLRKFRFRKETNNAAIIM-------KVDKDRQMVVLEDELQNISP 49
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium
meliloti [TaxId: 382]}
Length = 130
Score = 26.5 bits (57), Expect = 4.8
Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 218 LRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGT 277
+R +R+IL D V + + + + A + + + +
Sbjct: 11 VRARDAH-LRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPY 69
Query: 278 TRRWMCHGFLALKESGERLSH 298
+ + +R+
Sbjct: 70 RHEHDGYLQRYMATGEKRIIG 90
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR,
N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Length = 100
Score = 26.0 bits (57), Expect = 5.2
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 189 DALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDE 243
AL VL+ G V + G V ++ + + R + + +G+R E
Sbjct: 52 RALAVLKSEGLVSSRGALGTVVEKNPIVITGADRLKRMEK------NGMRYAPGE 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,960,267
Number of extensions: 92375
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 30
Length of query: 526
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 437
Effective length of database: 1,185,626
Effective search space: 518118562
Effective search space used: 518118562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)