BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy670
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 148/354 (41%), Gaps = 42/354 (11%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PT- 112
A LT+ V K D+G+Y A N G+ S + L E PRF KK P+
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-----------PPRFIKKLEPSR 301
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS-KKSIGKDTYLLRLEINNPT 171
I + + EC + SP ++WY+ I+++ + +MS +S+ LE+ N +
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA------VLEMYNLS 355
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC 231
+D G+Y C A N+ G ++++ +L + P F +KP + G + ++C+
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECEL 408
Query: 232 SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
P +V W K + ++ K KI+ + + I + D G Y+C N+ G
Sbjct: 409 QGTPPFQVSWHKDKRELRSGKKYKIM----SENFLTSIHILNVDSADIGEYQCKASNDVG 464
Query: 292 XXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351
PP F++K S G+ V ++ ++ + WF + E
Sbjct: 465 SDTCVGSITLKA-------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGE 517
Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ R S N+ + + L+ + G Y C IKN G TL++
Sbjct: 518 IV---RESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 41/344 (11%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK-PTI 113
+A L I V SD GEY A+N G +S+ L E K+P P F +K +
Sbjct: 60 VASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER----KLP----PSFARKLKDV 111
Query: 114 HQD-GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
H+ G + EC + S + WY+ ++++D ++ S + L+I +
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIH-----NVATLQILQTDQ 166
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKP---RIIPNESGTLIQMKC 229
G Y C+A N +G ++++ L E P F KP + ESGT KC
Sbjct: 167 SHVGQYNCSASNPLGTASSSAKLTLSEHE----VPPFFDLKPVSVDLALGESGTF---KC 219
Query: 230 KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
+ ++ W K ++ ++ K+ + E T ++ ++T D+G Y C N
Sbjct: 220 HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL-KVTK---GDAGQYTCYASNV 275
Query: 290 FGXXXXXXXXXXXXXXXPEGDPPTFIEKPK-IRSEQGGKLVVMECKVKAKPMPEIVWFHE 348
G +PP FI+K + R + + ECK+ P +++W+ +
Sbjct: 276 AGKDSCSAQLGVQ-------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 328
Query: 349 GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
E+Q++ + + + LE+ + ED+G Y C N
Sbjct: 329 ETEIQESSKFRMSFV----ESVAVLEMYNLSVEDSGDYTCEAHN 368
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 120/316 (37%), Gaps = 25/316 (7%)
Query: 101 GGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
G P + +P H + G+ + ++C ++ +P I WY+ + KM K+
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKN-- 58
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
+ L IN D G Y C A NS+G ++ L + + PSF K + +
Sbjct: 59 ---NVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK----LPPSFARKLKDV 111
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
G + +C+ + +V W+K +L+K+ + ++ T +I+ +
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHV-- 169
Query: 278 DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
G Y C+ N G PP F KP G+ +C V
Sbjct: 170 --GQYNCSASNPLGTASSSAKLTLSEHEV----PPFFDLKPVSVDLALGESGTFKCHVTG 223
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397
+I W + +E+ R N + + L V K D G Y C N G+
Sbjct: 224 TAPIKITWAKDNREI----RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 279
Query: 398 NANLTLNI-EMVRFIK 412
+ + L + E RFIK
Sbjct: 280 SCSAQLGVQEPPRFIK 295
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 32/241 (13%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
+AVL + N+ DSG+Y A N G SS+ +L K+K P P F KKP
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL-------KVKEP----PVFRKKPHPV 394
Query: 115 QD--GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKK-SIGKDTYLLRLEINNPT 171
+ G + +EC L+ +P + W++ D ++ KK I + +L + I N
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSWHK------DKRELRSGKKYKIMSENFLTSIHILNVD 448
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC 231
D G Y+C A N +G ++ + P F++K I G +Q++
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLKA-------PPRFVKKLSDISTVVGEEVQLQATI 501
Query: 232 SAKPRPEVKWFK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
V WFK ++V+ES I I +E T + +P ++G Y C +KNE
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQF--SRAEP--ANAGKYTCQIKNEA 557
Query: 291 G 291
G
Sbjct: 558 G 558
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 34/241 (14%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PT- 112
A LT+ V K D+G+Y A N G+ S + L E PRF KK P+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-----------PPRFIKKLEPSR 109
Query: 113 -IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS-KKSIGKDTYLLRLEINNP 170
+ QD + EC + SP ++WY+ I+++ + +MS +S+ LE+ N
Sbjct: 110 IVKQD-EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA------VLEMYNL 162
Query: 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230
+ +D G+Y C A N+ G ++++ +L + P F +KP + G + ++C+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECE 215
Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
P +V W K + ++ K KI+ + + I + D G Y+C N+
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIM----SENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 291 G 291
G
Sbjct: 272 G 272
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 35/298 (11%)
Query: 101 GGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
G AP F + D G+ +C + + I W + + I G KM+
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---P 214
+L++ TK D G Y C A N G+ + + L Q P FI+K
Sbjct: 61 ATLTVLKV-----TKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPS 108
Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
RI+ + T + +CK P +V W+K + ++ESSK ++ E + E+ +
Sbjct: 109 RIVKQDEHT--RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNL 162
Query: 275 IGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
DSG Y C N G +PP F +KP G V +EC+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVK-------EPPVFRKKPHPVETLKGADVHLECE 215
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
++ P ++ W + +EL+ + + + + + + + D G Y+C N
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYK----IMSENFLTSIHILNVDSADIGEYQCKASN 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
+AVL + N+ DSG+Y A N G SS+ +L K+K P P F KKP
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL-------KVKEP----PVFRKKPHPV 202
Query: 115 QD--GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
+ G + +EC L+ +P + W++ + + + K I + +L + I N
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK-----IMSENFLTSIHILNVDS 257
Query: 173 DDGGNYRCNACNSIG 187
D G Y+C A N +G
Sbjct: 258 ADIGEYQCKASNDVG 272
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 137/348 (39%), Gaps = 47/348 (13%)
Query: 69 GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK---PTIHQDGDLLVMECV 125
GEY+ A+NK G S ++++ K+P +PK+ P + Q+G L ++C
Sbjct: 90 GEYQCFARNKFGTALSN----------RIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCN 139
Query: 126 LEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184
P P I W + +E + K + D Y + + + D N R + +
Sbjct: 140 PPPGLPSPVIFWMSSS--MEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTH 197
Query: 185 SIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE---SGTLIQMKCKCSAKPRPEVKW 241
+I + N L A PSF+ ++ G + ++C S P P++ W
Sbjct: 198 TIQQKNP-FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAW 256
Query: 242 FK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXX 300
+K L + +K + + IT+ DSG Y C N+ G
Sbjct: 257 YKKGGDLPSDKAKF--------ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308
Query: 301 XXXXXXPEGDPPTFIEKPK---IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR 357
P ++++PK + + G+LV C+ P P + W G+ LQ
Sbjct: 309 VKAA-------PYWLDEPKNLILAPGEDGRLV---CRANGNPKPTVQWMVNGEPLQSAPP 358
Query: 358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ N + GD R D + +Y+CN N HG L AN +++
Sbjct: 359 -NPNREVAGDTIIFR----DTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 116/302 (38%), Gaps = 29/302 (9%)
Query: 118 DLLVMECVLEASPMPDIIWYQGTKV--IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
D +++EC + +P P W + ++ I R+ M ++S T ++ ++
Sbjct: 33 DNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS---GTLVIDFRSGGRPEEYE 89
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AK 234
G Y+C A N G + +N + Q + + P P ++ + G + ++C
Sbjct: 90 GEYQCFARNKFGTALSN-RIRLQVSK--SPLWPKENLDPVVV--QEGAPLTLQCNPPPGL 144
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXX 294
P P + W + K ++ D Y + D Y CN + F
Sbjct: 145 PSPVIFWMSSSMEPITQDK-RVSQGHNGDLYFSNVMLQD----MQTDYSCNARFHFTHTI 199
Query: 295 XXXXXXXXXXXXPEG---DPPTFIEKPKIRSEQ---GGKLVVMECKVKAKPMPEIVWFHE 348
G P+F+ S Q G +++EC P P+I W+ +
Sbjct: 200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK 259
Query: 349 GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
G +L +D+ K + ++ L + + +ED+G Y C N G + +++ ++
Sbjct: 260 GGDL-PSDKA------KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA 312
Query: 409 RF 410
+
Sbjct: 313 PY 314
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 15/136 (11%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
L I NV + DSGEY +A NK G T+++ L P K I
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP---------KNLILAP 326
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G+ + C +P P + W + ++ + + DT + R +
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAP--PNPNREVAGDTIIFR----DTQISSRA 380
Query: 177 NYRCNACNSIGESNAN 192
Y+CN N G AN
Sbjct: 381 VYQCNTSNEHGYLLAN 396
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PT- 112
A LT+ V K D+G+Y A N G+ S + L ++ P PRF KK P+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-------VQAP----PRFIKKLEPSR 109
Query: 113 -IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS-KKSIGKDTYLLRLEINNP 170
+ QD + EC + SP ++WY+ I+++ + +MS +S+ LE+ N
Sbjct: 110 IVKQD-EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA------VLEMYNL 162
Query: 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230
+ +D G+Y C A N+ G ++++ +L + P F +KP + G + ++C+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECE 215
Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
P +V W K + ++ K KI+ + + I + D G Y+C N+
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIM----SENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 291 G 291
G
Sbjct: 272 G 272
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 35/298 (11%)
Query: 101 GGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
G AP F + D G+ +C + + I W + + I G KM+
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---P 214
+L++ TK D G Y C A N G+ + + L Q P FI+K
Sbjct: 61 ATLTVLKV-----TKGDAGQYTCYASNVAGKDSCSAQLGVQA-------PPRFIKKLEPS 108
Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
RI+ + T + +CK P +V W+K + ++ESSK ++ E + E+ +
Sbjct: 109 RIVKQDEHT--RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNL 162
Query: 275 IGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
DSG Y C N G +PP F +KP G V +EC+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVK-------EPPVFRKKPHPVETLKGADVHLECE 215
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
++ P ++ W + +EL+ + + + + + + + D G Y+C N
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYK----IMSENFLTSIHILNVDSADIGEYQCKASN 269
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
+AVL + N+ DSG+Y A N G SS+ +L K+K P P F KKP
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL-------KVKEP----PVFRKKPHPV 202
Query: 115 QD--GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
+ G + +EC L+ +P + W++ + + + K I + +L + I N
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK-----IMSENFLTSIHILNVDS 257
Query: 173 DDGGNYRCNACNSIG 187
D G Y+C A N +G
Sbjct: 258 ADIGEYQCKASNDVG 272
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
+G AP ++ + + + G Q+ C+ +P P++KW++ K + +S K K+ + +
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSE 323
T ++ E + D G Y C NE G P+ P + K K
Sbjct: 64 TLTVMTEEQE----DEGVYTCIATNEVG--EVETSSKLLLQATPQFH-PGYPLKEKYYGA 116
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD-PRKED 382
G L + + +P+P + WFH K LQ ++ N+T++ +++ L +K+ RK
Sbjct: 117 VGSTLRLHVMYI-GRPVPAMTWFHGQKLLQNSE----NITIENTEHYTHLVMKNVQRKTH 171
Query: 383 TGLYKCNIKNFHGELNANLTLNIE 406
G YK + N G ++A L + I+
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 102 GKAPRFPK--KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
G+AP K K + G+ + C + P+PDI WY+ K + + + KMS D
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMS-----SD 59
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
L + ++D G Y C A N +GE + L Q F P + K +
Sbjct: 60 GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQ---FHPGYPLKEKYY-G 115
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
G+ +++ +P P + WF KL++ S I I N + T+ ++ + +
Sbjct: 116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENI-TIENTEHYTHLVMKNVQRKT--HA 172
Query: 280 GTYRCNVKNEFG 291
G Y+ + N FG
Sbjct: 173 GKYKVQLSNVFG 184
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 18/157 (11%)
Query: 49 QSRLYYLA------VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGG 102
QSR Y ++ LT+ ++ D G Y IA N+ GE ++ L L+
Sbjct: 50 QSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL-------LLQATPQ 102
Query: 103 KAPRFPKKPTIHQD-GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
P +P K + G L + + P+P + W+ G K+++++ I + + Y
Sbjct: 103 FHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN----TEHY 158
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+ N K G Y+ N G +A + + Q
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 105/247 (42%), Gaps = 31/247 (12%)
Query: 50 SRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG-GKAPR 106
SR+ L L I +Q DSG Y+ A+N +ST N +E L PG +
Sbjct: 169 SRVVVLPSGALQISRLQPGDSGVYRCSARNP----ASTRTGNEAEVR-ILSDPGLHRQLY 223
Query: 107 FPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
F ++P+ I +G V+EC + P P W +G +VI+ ++ K S+ + LL
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ----LRSKKYSLLGGSNLL- 278
Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL 224
I+N T DD G Y C + N NI+ + E P F+ P +
Sbjct: 279 --ISNVTDDDSGTYTC----VVTYKNENISAS---AELTVLVPPWFLNHPSNLYAYESMD 329
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
I+ +C S KP P V W K +V S +I+ I + D G Y+C
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN-------LRILGVVKSDEGFYQC 382
Query: 285 NVKNEFG 291
+NE G
Sbjct: 383 VAENEAG 389
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 112/293 (38%), Gaps = 37/293 (12%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
GD ++++C + PMP I W + +D I + + + L++ P D G
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQ---QDLNPIPGDSRVVVLPSGALQISRLQP--GDSG 190
Query: 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
YRC+A N N A + G F+++P + G ++C S P
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV--KNEFGXXX 294
P W + +++++ SK ++ + +I +TD DSGTY C V KNE
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSN---LLISNVTDD---DSGTYTCVVTYKNENISAS 304
Query: 295 XXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ 354
PP F+ P + EC V KP+P + W G
Sbjct: 305 AELTVLV---------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG----- 350
Query: 355 TDRISWNVTLKGDKYHI----RLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
+V + D + I L + K D G Y+C +N G ++ L
Sbjct: 351 ------DVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 31/241 (12%)
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC 231
K D G Y+C A S+G+S + I+ + G F+ + I G + +KC+
Sbjct: 91 KPDEGLYQCEA--SLGDSGSIISRTAKVMVAGP---LRFLSQTESITAFMGDTVLLKCEV 145
Query: 232 SAKPRPEVKWFKADK---LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288
P P + W K + + S++ ++ + +I+ DSG YRC+ +N
Sbjct: 146 IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-------LQISRLQPGDSGVYRCSARN 198
Query: 289 EFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE 348
F+++P GK V+EC V P P W
Sbjct: 199 PASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR- 257
Query: 349 GKELQQTDRISWNVTLKGDKYHI----RLEVKDPRKEDTGLYKCNI--KNFHGELNANLT 402
G+E+ Q L+ KY + L + + +D+G Y C + KN + +A LT
Sbjct: 258 GEEVIQ---------LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308
Query: 403 L 403
+
Sbjct: 309 V 309
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 139/353 (39%), Gaps = 33/353 (9%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
+VL I++V+K D G Y+ +N ++ L G+ P R + +
Sbjct: 389 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG---GRFDPP---VIRQAFQEETME 442
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
G + ++CV +P P+I W K I + R ++ + + L I + +DG
Sbjct: 443 PGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDG 502
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSF--IEKPRIIPNESGTLIQMKCKCSA 233
G Y+C A + +G + + LN G P +EK I+ E TLI + C +
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYG-------LPYIRQMEKKAIVAGE--TLI-VTCPVAG 552
Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXX 293
P + W + ++ + + K K+ N +I E + D TY C KN+ G
Sbjct: 553 YPIDSIVWERDNRALPINRKQKVFPNGT-----LIIENVER-NSDQATYTCVAKNQEG-Y 605
Query: 294 XXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKEL 352
P P F E P Q G+ + + C V +P I W +G+ +
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPA----QVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661
Query: 353 QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ I+ T + + L ++ G + C+ +N G LN+
Sbjct: 662 SEDLGIT---TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 115/314 (36%), Gaps = 35/314 (11%)
Query: 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179
+ + C + P+P WY K IE T R + + L I + +D G Y
Sbjct: 266 MALLCPAQGYPVPVFRWY---KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 322
Query: 180 CNACNSIGESNANIALNFQGGENGAGFAP-SFIEKPRIIPNESGTLIQMKCKCSAKPRPE 238
C NS+G + L AP S P + G C+ + P
Sbjct: 323 CVVNNSVGGESVETVLTVT--------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 374
Query: 239 VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXX 298
V W K K + S + I + + + D G Y+C V+N+
Sbjct: 375 VSWMKDGKAIGHSESVLRIESVKKE--------------DKGMYQCFVRND----RESAE 416
Query: 299 XXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR- 357
DPP + + + + G V ++C P PEI W +GK++ DR
Sbjct: 417 ASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRY 476
Query: 358 -ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVR 416
+ VT+ GD L + D GLYKC K+ G + LN+ + +I R
Sbjct: 477 QVGQYVTVNGDVVSY-LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI--RQM 533
Query: 417 SNKGIVGKMGLVKT 430
K IV L+ T
Sbjct: 534 EKKAIVAGETLIVT 547
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 138/368 (37%), Gaps = 63/368 (17%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
++ L I +V +D G YK IAK+K G +E KL V G R +K I
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVG---------VAEHSAKLNVYGLPYIRQMEKKAIV 539
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
G+ L++ C + P+ I+W + + + I +K T ++ N D
Sbjct: 540 A-GETLIVTCPVAGYPIDSIVWERDNRALP----INRKQKVFPNGTLIIE---NVERNSD 591
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII-------PNESGTLIQM 227
Y C A N G S A +L Q + PRII P + G + +
Sbjct: 592 QATYTCVAKNQEGYS-ARGSLEVQ-----------VMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 228 KCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
C P + W + + E I + + I +G + C+
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLG---ITTSRVGRRGSVLTIEAVEASHAGNFTCHA 696
Query: 287 KNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
+N G PP +I +P ++ G +ECK P P++ W
Sbjct: 697 RNLAGHQQFTTPLNVYV-------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWK 749
Query: 347 H-------EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LN 398
E K+L+++D N+ ++ H V + +K + G Y C N G L+
Sbjct: 750 KAVGDTPGEYKDLKKSD----NIRVEEGTLH----VDNIQKTNEGYYLCEAINGIGSGLS 801
Query: 399 ANLTLNIE 406
A + ++++
Sbjct: 802 AVIMISVQ 809
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 126/341 (36%), Gaps = 40/341 (11%)
Query: 82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQ 138
GS T+ N + D K P F K+PT D +EC +PMP+IIW +
Sbjct: 23 GSQTLAANPPDADQK-------GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIR 75
Query: 139 --GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
GT V + G ++S S GK + + + Y C A N G + I+ +
Sbjct: 76 SDGTAVGDVPGLRQIS--SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG---SIISRD 130
Query: 197 FQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI 256
A + + + K +I S + + A V W + +
Sbjct: 131 VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH------TDEEENYF 184
Query: 257 IVNEQDDTYEII----CEITDPIGPDSG--TYRCNVKNEF-GXXXXXXXXXXXXXXXP-E 308
E D Y ++ I + +GP+ G +Y+C K+ G P
Sbjct: 185 PGAEYDGKYLVLPSGELHIRE-VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243
Query: 309 GDPPTFIEKPK--IRSEQGGKLVVMECKVKAKPMPEIVW--FHEGKELQQTDRISWNVTL 364
P + K +++ G + + C + P+P W F EG +Q + N +
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQA--VVLNDRV 301
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
K + L +KD ED+G Y C + N G + L +
Sbjct: 302 K--QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 307 PEGDP--PTFIEKPKIRSE-QGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNV 362
P+ D P F+++P R + +ECK PMPEI+W +G + + +
Sbjct: 32 PDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR-QI 90
Query: 363 TLKGDKYHIRLEVKDPRKE-DTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKG 420
+ G +D R+E +Y C +N G ++ ++ + + ++ + V
Sbjct: 91 SSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHV 150
Query: 421 IVGKMGLVKTR--SYHRDF 437
I G ++K S+ DF
Sbjct: 151 IRGNSAVIKCLIPSFVADF 169
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 133/366 (36%), Gaps = 64/366 (17%)
Query: 58 LTIKNVQKS-DSGEYKVIAKNKNGEG-SSTVNLNFS-------EEDGKLKVPGGKAPRFP 108
L I N K+ D+G Y+ +A N G S L F EE +K G P
Sbjct: 62 LVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLP 121
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
P H G L +L P I GR +S+ + + Y+ R +
Sbjct: 122 CNPPAHYPG--LSYRWLLNEFP----------NFIPTDGRHFVSQTT--GNLYIARTNAS 167
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQ----GGENGAGFAPSFIEKPRIIPNES--- 221
D GNY C A + + S ++ F E+ FAPS + P E+
Sbjct: 168 -----DLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKAR---FPAETYAL 219
Query: 222 -GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G + ++C P P +KW K D ++ Q T E +I D G
Sbjct: 220 VGQQVTLECFAFGNPVPRIKWRKVDG----------SLSPQWTTAEPTLQIPSVSFEDEG 269
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
TY C +N G P +++ G + C KP
Sbjct: 270 TYECEAENSKGRDTVQGRIIVQAQ-------PEWLKVISDTEADIGSNLRWGCAAAGKPR 322
Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
P + W G+ L +R+ L GD +L + ED+G+Y+C +N HG + A+
Sbjct: 323 PTVRWLRNGEPLASQNRVE---VLAGDLRFSKLSL-----EDSGMYQCVAENKHGTIYAS 374
Query: 401 LTLNIE 406
L ++
Sbjct: 375 AELAVQ 380
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 137/363 (37%), Gaps = 58/363 (15%)
Query: 58 LTIKN-VQKSDSGEYKVIAKNKNGEG-SSTVNLNF-------SEEDGKLKVPGGKAPRFP 108
L I N V+ D+G Y+ +A N G S +L F +EE +K+ G F
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
P H L +L + P+ I G + + T + Y+ + E +
Sbjct: 123 CSPPPHYPA--LSYRWLL--NEFPNFIPADGRRFVSQTT----------GNLYIAKTEAS 168
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQ----GGENGAGFAPSFIEK-PRIIPNESGT 223
D GNY C A + I ++ F E+ +APS K P +G
Sbjct: 169 -----DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQ 223
Query: 224 LIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
++ ++C P P++KW K D ++SK + E + I + D GTY
Sbjct: 224 MVTLECFAFGNPVPQIKWRKLDG--SQTSKWL--------SSEPLLHIQNVDFEDEGTYE 273
Query: 284 CNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI 343
C +N G P +++ G + C KP P +
Sbjct: 274 CEAENIKGRDTYQGRIIIHAQ-------PDWLDVITDTEADIGSDLRWSCVASGKPRPAV 326
Query: 344 VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
W +G+ L +RI + G + V ED+G+Y+C +N HG + A+ L
Sbjct: 327 RWLRDGQPLASQNRIE----VSGGELRFSKLVL----EDSGMYQCVAENKHGTVYASAEL 378
Query: 404 NIE 406
++
Sbjct: 379 TVQ 381
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 18/143 (12%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
+L I+NV D G Y+ A+N G + + + L V T
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV---------ITDTEADI 308
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G L CV P P + W + + + RI++S + +L +D G
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVL---------EDSG 359
Query: 177 NYRCNACNSIGESNANIALNFQG 199
Y+C A N G A+ L Q
Sbjct: 360 MYQCVAENKHGTVYASAELTVQA 382
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 12/201 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP+F + + + G+ + S P PEV WF+ +++ S+ + ++ D +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 267 I-ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQG 325
+ I +T +SG Y N G E PP F+++ + + +
Sbjct: 65 LTIPAVTKA---NSGRYSLKATNGSGQATSTAELLVKA----ETAPPNFVQRLQSMTVRQ 117
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G V ++ +V P P + ++ +G E+Q + + + ++ +GD Y + + P ED+G
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYP--EDSGT 173
Query: 386 YKCNIKNFHGELNANLTLNIE 406
Y N N G + L ++
Sbjct: 174 YSVNATNSVGRATSTAELLVQ 194
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK---PT 112
A LTI V K++SG Y + A N +G+ +ST L E P F ++ T
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP--------PNFVQRLQSMT 114
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
+ Q G + ++ + P P + +Y+ I+ + ++S++ D Y L + P
Sbjct: 115 VRQ-GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG---DLYSLLIAEAYP-- 168
Query: 173 DDGGNYRCNACNSIGESNANIALNFQ 198
+D G Y NA NS+G + + L Q
Sbjct: 169 EDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 12/201 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP+F + + + G+ + S P PEV WF+ +++ S+ + ++ D +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 267 I-ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQG 325
+ I +T +SG Y N G E PP F+++ + + +
Sbjct: 65 LTIPAVTKA---NSGRYSLKATNGSGQATSTAELLVKA----ETAPPNFVQRLQSMTVRQ 117
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G V ++ +V P P + ++ +G E+Q + + + ++ +GD Y + + P ED+G
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYP--EDSGT 173
Query: 386 YKCNIKNFHGELNANLTLNIE 406
Y N N G + L ++
Sbjct: 174 YSVNATNSVGRATSTAELLVQ 194
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK---PT 112
A LTI V K++SG Y + A N +G+ +ST L E P F ++ T
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP--------PNFVQRLQSMT 114
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
+ Q G + ++ + P P + +Y+ I+ + ++S++ D Y L + P
Sbjct: 115 VRQ-GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG---DLYSLLIAEAYP-- 168
Query: 173 DDGGNYRCNACNSIGESNANIALNFQG 199
+D G Y NA NS+G + + L QG
Sbjct: 169 EDSGTYSVNATNSVGRATSTAELLVQG 195
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 140/365 (38%), Gaps = 43/365 (11%)
Query: 42 SSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
++ L +D+ L +L Q SD G Y+ A+ G SS V ++F K +
Sbjct: 54 NAALRKDEGSLVFL------RPQASDEGHYQCFAETPAGVASSRV-ISFR----KTYLIA 102
Query: 102 GKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSI--GK 158
A K P +G ++CVL A P P I W + + + + I G
Sbjct: 103 SPAKTHEKTPI---EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP 159
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNS-IGESNANIALNFQG-GENGAGF----APSFIE 212
D L + D Y C A N+ + E + +G ++ +G+ P ++
Sbjct: 160 DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVS 219
Query: 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT 272
K + ++G + + C + P +FK K V + + +I + + ++ + T
Sbjct: 220 KDMMA--KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277
Query: 273 DPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKP-KIRSEQGGKLVVM 331
P D G Y C V N G P + +KP K+ + G+ V +
Sbjct: 278 LP--EDEGVYTCEVDNGVGKPQKHSLKLTVVSA------PKYEQKPEKVIVVKQGQDVTI 329
Query: 332 ECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391
CKV P P +VW H K L VT G L +K + D G Y C
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPLSGG---RATVTDSG------LVIKGVKNGDKGYYGCRAT 380
Query: 392 NFHGE 396
N HG+
Sbjct: 381 NEHGD 385
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 25/198 (12%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P+ ++KP + I + C P P +W+K + + K +++N++
Sbjct: 215 PALVQKP--LELMVAHTISLLCPAQGFPAPSFRWYKF--IEGTTRKQAVVLNDRVKQVSG 270
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGK 327
I D + DSG Y C V N G + DPPT ++ G+
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGR 323
Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
V C+ P+ + W +GK + ++ + L ++ +KED G+Y+
Sbjct: 324 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDKGMYQ 369
Query: 388 CNIKNFHGELNANLTLNI 405
C ++N A+ L +
Sbjct: 370 CFVRNDRESAEASAELKL 387
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 29/190 (15%)
Query: 104 APRFP---KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
APR P +KP + + C + P P WY K IE T R + +
Sbjct: 211 APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY---KFIEGTTRKQAVVLNDRVKQ 267
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP-SFIEKPRIIPN 219
L I + +D G Y C NS+G + L AP S P
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT--------APLSAKIDPPTQTV 319
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
+ G C+ + P V W K K + S + I + + + D
Sbjct: 320 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKE--------------DK 365
Query: 280 GTYRCNVKNE 289
G Y+C V+N+
Sbjct: 366 GMYQCFVRND 375
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 312 PTFIEKPKIRSEQGGKL-VVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKY 369
P F+++P R + +ECK PMPEI+W +G + + ++ G
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR-QISSDGKLV 62
Query: 370 HIRLEVKDPRKE-DTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
+D R+E +Y C +N G ++ ++ + + ++ + V I G +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 428 VKTR--SYHRDF 437
+K S+ DF
Sbjct: 123 IKCLIPSFVADF 134
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 26/99 (26%)
Query: 207 APSFIEKP--RI-IPNESGTLIQMKCKCSAKPRPEVKWFKAD--------KLVKESSKIK 255
P F+++P RI N +G +++CK S P PE+ W ++D L + SS K
Sbjct: 3 GPVFLKEPTNRIDFSNSTGA--EIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 256 II---VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
++ +D E+ ++ Y C +N+FG
Sbjct: 61 LVFPPFRAEDYRQEVHAQV----------YACLARNQFG 89
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 116/321 (36%), Gaps = 36/321 (11%)
Query: 103 KAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQ--GTKVIEDTGRIKMSKKSIG 157
K P F K+PT D +EC +PMP+IIW + GT V + G ++S S G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SDG 59
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
K + + + Y C A N G + I+ + A + + + K +I
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFG---SIISRDVHVRAVVAQYYEADVNKEHVI 116
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEII----CEITD 273
S + + A V W + + E D Y ++ I +
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWH------TDEEENYFPGAEYDGKYLVLPSGELHIRE 170
Query: 274 PIGPDSG--TYRCNVKNEF-GXXXXXXXXXXXXXXXPEGDP----PTFIEKPKIRSEQGG 326
+GP+ G +Y+C K+ G P P ++KP
Sbjct: 171 -VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP--LELMVA 227
Query: 327 KLVVMECKVKAKPMPEIVW--FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
+ + C + P P W F EG +Q + N +K + L +KD ED+G
Sbjct: 228 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQA--VVLNDRVK--QVSGTLIIKDAVVEDSG 283
Query: 385 LYKCNIKNFHGELNANLTLNI 405
Y C + N G + L +
Sbjct: 284 KYLCVVNNSVGGESVETVLTV 304
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 28/142 (19%)
Query: 58 LTIKNVQKSDSGEYKVIAKNK-NGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
L IK+ DSG+Y + N GE TV + K+ PT D
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID-----------PPTQTVD 320
Query: 117 -GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
G V C +P+ + W + K+IG +LR+E + K+D
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMK-------------DGKAIGHSESVLRIE--SVKKEDK 365
Query: 176 GNYRCNACNSIGESNANIALNF 197
G Y+C N + A+ L
Sbjct: 366 GMYQCFVRNDRESAEASAELKL 387
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 25/198 (12%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P+ ++KP + I + C P P +W+K + + K +++N++
Sbjct: 221 PALVQKP--LELMVAHTISLLCPAQGFPAPSFRWYKF--IEGTTRKQAVVLNDRVKQVSG 276
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGK 327
I D + DSG Y C V N G + DPPT ++ G+
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGR 329
Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
V C+ P+ + W +GK + ++ + L ++ +KED G+Y+
Sbjct: 330 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDKGMYQ 375
Query: 388 CNIKNFHGELNANLTLNI 405
C ++N A+ L +
Sbjct: 376 CFVRNDRESAEASAELKL 393
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 66/190 (34%), Gaps = 29/190 (15%)
Query: 104 APRFP---KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
APR P +KP + + C + P P WY K IE T R + +
Sbjct: 217 APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWY---KFIEGTTRKQAVVLNDRVKQ 273
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP-SFIEKPRIIPN 219
L I + +D G Y C NS+G + L AP S P
Sbjct: 274 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT--------APLSAKIDPPTQTV 325
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
+ G C+ + P V W K K + S + I + + + D
Sbjct: 326 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKE--------------DK 371
Query: 280 GTYRCNVKNE 289
G Y+C V+N+
Sbjct: 372 GMYQCFVRND 381
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 30/109 (27%)
Query: 197 FQGGENGAGFAPSFIEKP--RI-IPNESGTLIQMKCKCSAKPRPEVKWFKAD-------- 245
FQG + G P F+++P RI N +G +++CK S P PE+ W ++D
Sbjct: 3 FQGDQKG----PVFLKEPTNRIDFSNSTGA--EIECKASGNPMPEIIWIRSDGTAVGDVP 56
Query: 246 KLVKESSKIKII---VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
L + SS K++ +D E+ ++ Y C +N+FG
Sbjct: 57 GLRQISSDGKLVFPPFRAEDYRQEVHAQV----------YACLARNQFG 95
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 312 PTFIEKPKIRSE-QGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKY 369
P F+++P R + +ECK PMPEI+W +G + + ++ G
Sbjct: 10 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR-QISSDGKLV 68
Query: 370 HIRLEVKDPRKE-DTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
+D R+E +Y C +N G ++ ++ + + ++ + V I G +
Sbjct: 69 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 128
Query: 428 VKTR--SYHRDF 437
+K S+ DF
Sbjct: 129 IKCLIPSFVADF 140
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 116/321 (36%), Gaps = 36/321 (11%)
Query: 103 KAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQ--GTKVIEDTGRIKMSKKSIG 157
K P F K+PT D +EC +PMP+IIW + GT V + G ++S S G
Sbjct: 8 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SDG 65
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
K + + + Y C A N G + I+ + A + + + K +I
Sbjct: 66 KLVFPPFRAEDYRQEVHAQVYACLARNQFG---SIISRDVHVRAVVAQYYEADVNKEHVI 122
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEII----CEITD 273
S + + A V W + + E D Y ++ I +
Sbjct: 123 RGNSAVIKCLIPSFVADFVEVVSWH------TDEEENYFPGAEYDGKYLVLPSGELHIRE 176
Query: 274 PIGPDSG--TYRCNVKNEF-GXXXXXXXXXXXXXXXPEGDP----PTFIEKPKIRSEQGG 326
+GP+ G +Y+C K+ G P P ++KP
Sbjct: 177 -VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP--LELMVA 233
Query: 327 KLVVMECKVKAKPMPEIVW--FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
+ + C + P P W F EG +Q + N +K + L +KD ED+G
Sbjct: 234 HTISLLCPAQGFPAPSFRWYKFIEGTTRKQA--VVLNDRVK--QVSGTLIIKDAVVEDSG 289
Query: 385 LYKCNIKNFHGELNANLTLNI 405
Y C + N G + L +
Sbjct: 290 KYLCVVNNSVGGESVETVLTV 310
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
E G + C+ S P P + WF+ KL++E+ K + + + T + + I D
Sbjct: 17 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT------VRNIINSDG 70
Query: 280 GTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
G Y C N+ G P I+ + + G++ ++ C + +P
Sbjct: 71 GPYVCRATNKAGEDEKQAFLQVFVQ-------PHIIQLKNETTYENGQVTLV-CDAEGEP 122
Query: 340 MPEIVWFH--EGKELQQTDR-ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
+PEI W +G + D+ + + +KG L +KD + D+G Y C + G
Sbjct: 123 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182
Query: 397 LNANLTLNIE 406
++ L+IE
Sbjct: 183 HQKSMYLDIE 192
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 22/180 (12%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G+ + C SP P I W++ K+IE+ + + G +T L + N DGG
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSNT---ELTVRNIINSDGG 71
Query: 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
Y C A N GE L P I+ E+G + + C +P
Sbjct: 72 PYVCRATNKAGEDEKQAFLQ-------VFVQPHIIQLKNETTYENGQ-VTLVCDAEGEPI 123
Query: 237 PEVKWFKA-DKLV----KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
PE+ W +A D +S +I V Q + + I D DSG Y C + G
Sbjct: 124 PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL--HIKDVKLSDSGRYDCEAASRIG 181
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 26/150 (17%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
LT++N+ SD G Y A NK GE L + +++ K T +++G
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQL---------KNETTYENG 110
Query: 118 DLLVMECVLEASPMPDIIW---------YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
+ ++ C E P+P+I W +G K ++ GRI++ K G + L I
Sbjct: 111 QVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLD--GRIEV-KGQHGSSS----LHIK 162
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+ D G Y C A + IG ++ L+ +
Sbjct: 163 DVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
+K + I E + + C + P P +W+K + + K +++N++ I
Sbjct: 220 DKHQFIDVELASSYSLLCMAQSYPTPSFRWYKF--IEGTTRKQAVVLNDRVKQVSGTLII 277
Query: 272 TDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVM 331
D + DSG Y C V N G + DPPT ++ G+ V
Sbjct: 278 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVF 330
Query: 332 ECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391
C+ P+ + W +GK + ++ + L ++ +KED G+Y+C ++
Sbjct: 331 TCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDKGMYQCFVR 376
Query: 392 NFHGELNANLTLNI 405
N A+ L +
Sbjct: 377 NDRESAEASAELKL 390
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 57/167 (34%), Gaps = 26/167 (15%)
Query: 124 CVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183
C+ ++ P P WY K IE T R + + L I + +D G Y C
Sbjct: 237 CMAQSYPTPSFRWY---KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 293
Query: 184 NSIGESNANIALNFQGGENGAGFAP-SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWF 242
NS+G + L AP S P + G C+ + P V W
Sbjct: 294 NSVGGESVETVLTVT--------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 345
Query: 243 KADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
K K + S E + I D G Y+C V+N+
Sbjct: 346 KDGKAIGHS--------------ESVLRIESVKKEDKGMYQCFVRND 378
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 125/331 (37%), Gaps = 53/331 (16%)
Query: 103 KAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQ--GTKVIEDTGRIKMSKKSIG 157
K P F K+PT D +EC +PMP+IIW + GT V + G ++S S G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--SDG 59
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIG---ESNANI-ALNFQGGENGAGFAPSFIEK 213
K + + + Y C A N G + ++ A+ Q E+ A +
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEA-------DN 112
Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN--EQDDTYEII--- 268
+I G + MKC+ P + D + + N E D Y ++
Sbjct: 113 EYVI---RGNSVVMKCEI---PSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSG 166
Query: 269 -CEITDPIGPDSG--TYRCNVKNEF-GXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQ 324
I + +GP+ G +Y+C K+ G P G +PK+ +
Sbjct: 167 ELHIRE-VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGS-----VRPKVNPQD 220
Query: 325 GGKLVVME--------CKVKAKPMPEIVW--FHEGKELQQTDRISWNVTLKGDKYHIRLE 374
+ + +E C ++ P P W F EG +Q + N +K + L
Sbjct: 221 KHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQA--VVLNDRVK--QVSGTLI 276
Query: 375 VKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+KD ED+G Y C + N G + L +
Sbjct: 277 IKDAVVEDSGKYLCVVNNSVGGESVETVLTV 307
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 8/194 (4%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
G+ P F++ P SG + C+ + +P+P + W K K V S + ++I E D
Sbjct: 3 GSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVI--EFD 59
Query: 263 DTYEIICEITD-PIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIR 321
D + I + D Y C N G PT P+++
Sbjct: 60 DGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK 119
Query: 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
+ G+ M C P PEI WF K+ D + N +K + L+++ +
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWF---KDFLPVDPAASNGRIKQLRSGA-LQIESSEES 175
Query: 382 DTGLYKCNIKNFHG 395
D G Y+C N G
Sbjct: 176 DQGKYECVATNSAG 189
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G + C P P I W + K + + R ++ + G + +LR++ +D+
Sbjct: 22 GGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDDGAGS-VLRIQPLRVQRDEA- 78
Query: 177 NYRCNACNSIGESNANIALN-FQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
Y C A NS+GE N + L+ + + +GF P+ P++ E G M C P
Sbjct: 79 IYECTATNSLGEINTSAKLSVLEEDQLPSGF-PTIDMGPQLKVVEKGRTATMLCAAGGNP 137
Query: 236 RPEVKWFK---------ADKLVKE--SSKIKIIVNEQDDTYEIICEITDPIG 276
PE+ WFK ++ +K+ S ++I +E+ D + C T+ G
Sbjct: 138 DPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDKY 369
P F++ P+ ++ G + C+ +P P I W +GK++ Q+ + I ++ D
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFD-----DGA 62
Query: 370 HIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLTLNI 405
L ++ R + D +Y+C N GE+N + L++
Sbjct: 63 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 104/272 (38%), Gaps = 42/272 (15%)
Query: 134 IIWY--QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN- 190
I WY QG K+I T R+ + K+ + RL I N +D G YRC A ++ G++
Sbjct: 35 IDWYNPQGEKII-STQRVVVQKEGVRS-----RLTIYNANIEDAGIYRCQATDAKGQTQE 88
Query: 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNE--SGTLIQMKCKCSAKPRPEVKWFKADKLV 248
A + L + + P E G ++ C+ S+ P P V W ++ V
Sbjct: 89 ATVVLEIY---------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 139
Query: 249 KESSKIKIIVNEQDDTYEIICEITDPIG----PDSGTYRCNVKNEFGXXXXXXXXXXXXX 304
S D+ + ++ I D G YRC + E
Sbjct: 140 TTIS---------DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 190
Query: 305 XXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
P P +K + + G+ + C+ P P I WF GK +++ ++ L
Sbjct: 191 VPPAISMP---QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK----YIL 243
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
KG + L V++ D G Y C N GE
Sbjct: 244 KGS--NTELTVRNIINSDGGPYVCRATNKAGE 273
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 35/240 (14%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGS-STVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
LTI N D+G Y+ A + G+ +TV L + KL R P +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ---KLTF------REVVSPQEFKQ 112
Query: 117 GDLLVMECVLEASPMPDIIW-YQGTKV--IEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
G+ + C + +SP P + W Y +V I D R M + + + K
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN-RFAMLANNNLQILNI--------NKS 163
Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAP--SFIEKPRIIPNESGTLIQMKCKC 231
D G YRC G A ++F+ P S +K E G + C+
Sbjct: 164 DEGIYRCE-----GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 218
Query: 232 SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
S P P + WF+ KL++E+ K + + + T + + I D G Y C N+ G
Sbjct: 219 SGSPEPAISWFRNGKLIEENEKYILKGSNTELT------VRNIINSDGGPYVCRATNKAG 272
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 27/196 (13%)
Query: 104 APRFPKKPTIH---QDGDLLVME-----CVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155
A + PK P I + D LV E C +E+ P P+I W + K++ + S +
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRE 59
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
G+ +L +E D G Y C A N +G + + G P P
Sbjct: 60 NGQLLTILSVE-----DSDDGIYCCTANNGVGGAVESC------GALQVKMKPKITRPPI 108
Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
+ G + C P+P V W K D ++E+S+I ++ + + + E
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE----- 163
Query: 276 GPDSGTYRCNVKNEFG 291
D+G YRC KN G
Sbjct: 164 --DAGQYRCVAKNSLG 177
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ- 115
+LTI +V+ SD G Y A N G G + E G L+V P+ + P +
Sbjct: 63 LLTILSVEDSDDGIYCCTANN--GVGGAV------ESCGALQV--KMKPKITRPPINVKI 112
Query: 116 -DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+G V+ C +P P + W +G + + RI + + L I+N K+D
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG--------SLRIHNVQKED 164
Query: 175 GGNYRCNACNSIGES 189
G YRC A NS+G +
Sbjct: 165 AGQYRCVAKNSLGTA 179
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 229 CKCSAKPRPEVKWFKADKLVKE-SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
C + P+PE+ W + L+K ++ I N Q T I + D D G Y C
Sbjct: 29 CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT---ILSVEDS---DDGIYCCTAN 82
Query: 288 NEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347
N G PP ++ +G K V+ C P P + W
Sbjct: 83 NGVGGAVESCGALQVKMKPKITRPPI-----NVKIIEGLK-AVLPCTTMGNPKPSVSWIK 136
Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT-LNIE 406
L++ RI+ V G L + + +KED G Y+C KN G + L L +E
Sbjct: 137 GDSALRENSRIA--VLESGS-----LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Query: 407 M 407
+
Sbjct: 190 V 190
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 46 VQDQSRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSS 84
+++ SR+ L L I NVQK D+G+Y+ +AKN G S
Sbjct: 141 LRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYS 181
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 21/210 (10%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G A P I KP+ G + C P P + W K K V ++ + V
Sbjct: 1 GPGSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-GTQSRYTVL 59
Query: 260 EQDDTYEIICEITDPI--GPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDP-----P 312
EQ I+ +P+ G D Y C +N G EGD P
Sbjct: 60 EQPGGISIL--RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY----EGDKTPAGFP 113
Query: 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
+ P R + G V+M CK P P I W K + D + +LK D +
Sbjct: 114 VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI---KNQTKVDMSNPRYSLK-DGF--- 166
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L++++ R+ED G Y+C +N G ++ T
Sbjct: 167 LQIENSREEDQGKYECVAENSMGTEHSKAT 196
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 18/180 (10%)
Query: 117 GDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
G + C P P I+W + G KV R + ++ G +LR+E +DD
Sbjct: 23 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG--ISILRIEPVRAGRDDA 80
Query: 176 GNYRCNACNSIGES-NANIALN-FQGGENGAGFAPSFIEKP--RIIPNESGTLIQMKCKC 231
Y C A N +G++ +A+ L ++G + AGF P + P R+I E G + M CK
Sbjct: 81 -PYECVAENGVGDAVSADATLTIYEGDKTPAGF-PVITQGPGTRVI--EVGHTVLMTCKA 136
Query: 232 SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
P P + W K V S N + + +I + D G Y C +N G
Sbjct: 137 IGNPTPNIYWIKNQTKVDMS-------NPRYSLKDGFLQIENSREEDQGKYECVAENSMG 189
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 55 LAVLTIKNVQKS-DSGEYKVIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPT 112
+++L I+ V+ D Y+ +A+N G+ S+ L E D K P G P + P
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGD---KTPAG-FPVITQGPG 120
Query: 113 --IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG-KDTYLLRLEINN 169
+ + G ++M C +P P+I W I++ ++ MS KD +L +I N
Sbjct: 121 TRVIEVGHTVLMTCKAIGNPTPNIYW------IKNQTKVDMSNPRYSLKDGFL---QIEN 171
Query: 170 PTKDDGGNYRCNACNSIGESNA 191
++D G Y C A NS+G ++
Sbjct: 172 SREEDQGKYECVAENSMGTEHS 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP I KP+ + + G + C + P P IVW GK++ T + G
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNI 405
+R+E ++D Y+C +N G+ ++A+ TL I
Sbjct: 68 LRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI 102
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 39/243 (16%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKN------GEGSSTVNLN---FSEEDGKLKVPGGKAPRFP 108
L I V+KSD G Y + N G + + N E + K++V +FP
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFP 212
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
+ + G + +EC +P+P I+W + + R KS G LEI
Sbjct: 213 ET-VPAEKGTTVKLECFALGNPVPTILWRRADG--KPIARKARRHKSNGI------LEIP 263
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMK 228
N ++D G+Y C A NS G++ A L F N I + ES + +
Sbjct: 264 NFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV----QIINDIHVAMEES---VFWE 316
Query: 229 CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288
CK + +P+P +W K + +I+I EQ I ++ D+G Y+C +N
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQI---EQGTLNITIVNLS-----DAGMYQCVAEN 368
Query: 289 EFG 291
+ G
Sbjct: 369 KHG 371
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 139/364 (38%), Gaps = 62/364 (17%)
Query: 58 LTIKNVQKS-DSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-Q 115
L I N K+ D+G Y+ IA N G + KL+ + + + T+ +
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFG--------TIVSREAKLQFAYLENFKTRTRSTVSVR 115
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT---YLLRLEINNPTK 172
G +V+ C P P + + + +++ + ++T Y+ ++E K
Sbjct: 116 RGQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE-----K 166
Query: 173 DDGGNYRCNACNSIGESNA---NIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMK 228
D GNY C N++ L + + P ++ P +P E GT ++++
Sbjct: 167 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 226
Query: 229 CKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
C P P + W +AD + +++ + K I EI + D+G+Y C
Sbjct: 227 CFALGNPVPTILWRRADGKPIARKARRHK---------SNGILEIPNFQQEDAGSYECVA 277
Query: 287 KNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
+N G P +++ + V ECK +P P W
Sbjct: 278 ENSRGKNVAKGQLTFYAQ-------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330
Query: 347 HEGKELQQTDRI-----SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
G L DRI + N+T+ + L D G+Y+C +N HG + ++
Sbjct: 331 KNGDPLLTRDRIQIEQGTLNITI------VNL-------SDAGMYQCVAENKHGVIFSSA 377
Query: 402 TLNI 405
L++
Sbjct: 378 ELSV 381
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 115/312 (36%), Gaps = 48/312 (15%)
Query: 102 GKAPRFPKKPT-----IHQDGDLLVMECVLEASPMPDIIW-YQGTKVIEDTGRIKMSKKS 155
G P F ++P+ + + + + C ++ +P P I W GT V I M +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV-----DIGMDFRY 57
Query: 156 IGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEK 213
D LL INNP K D G Y+C A NS G + A L F EN S +
Sbjct: 58 SVVDGSLL---INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE----SSKIKIIVNEQDDTYEIIC 269
R G + + C P P + E + + E + Y
Sbjct: 115 RR------GQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKV 164
Query: 270 EITDPIGPDSGTYRCNVKNEFGXXXX----XXXXXXXXXXXPEGDPPTFIEKPKIRSEQG 325
E + D G Y C V N E +P ++ P+ +
Sbjct: 165 EKS-----DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219
Query: 326 GKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G V +EC P+P I+W +GK + + R K + LE+ + ++ED G
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARKAR--------RHKSNGILEIPNFQQEDAG 271
Query: 385 LYKCNIKNFHGE 396
Y+C +N G+
Sbjct: 272 SYECVAENSRGK 283
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 309 GDPPTFIEKPK-----IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT 363
G P F+++P + SE+ K V + C+VK P P I W G ++ ++V
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV- 59
Query: 364 LKGDKYHIRLEVKDPRK-EDTGLYKCNIKNFHGEL-NANLTLNIEMVRFIKYRVRSNKGI 421
+ G L + +P K +D G Y+C N G + + L + K R RS +
Sbjct: 60 VDGS-----LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 422 VGKMGLV 428
G+V
Sbjct: 115 RRGQGMV 121
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 20/133 (15%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
+L I N Q+ D+G Y+ +A+N G+ + L F + +++ IH
Sbjct: 258 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIN----------DIHV 307
Query: 116 DGDLLVM-ECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ V EC P P W + + RI++ + + L I D
Sbjct: 308 AMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT---------LNITIVNLSD 358
Query: 175 GGNYRCNACNSIG 187
G Y+C A N G
Sbjct: 359 AGMYQCVAENKHG 371
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 203 GAGFAPSFIEKPR--IIPNESGTL-IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G G P F+++P + P +S +++ C+ P+P ++W KL + + I ++
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRW----KL--NGTDVDIGMD 54
Query: 260 EQDDTYEIICEITDP-IGPDSGTYRCNVKNEFG 291
+ + I +P D+GTY+C N FG
Sbjct: 55 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG 87
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 39/243 (16%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKN------GEGSSTVNLN---FSEEDGKLKVPGGKAPRFP 108
L I V+KSD G Y + N G + + N E + K++V +FP
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFP 211
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
+ + G + +EC +P+P I+W + + R KS G LEI
Sbjct: 212 ET-VPAEKGTTVKLECFALGNPVPTILWRRADG--KPIARKARRHKSNGI------LEIP 262
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMK 228
N ++D G+Y C A NS G++ A L F N I + ES + +
Sbjct: 263 NFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV----QIINDIHVAMEES---VFWE 315
Query: 229 CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288
CK + +P+P +W K + +I+I EQ I ++ D+G Y+C +N
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQI---EQGTLNITIVNLS-----DAGMYQCVAEN 367
Query: 289 EFG 291
+ G
Sbjct: 368 KHG 370
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 139/364 (38%), Gaps = 62/364 (17%)
Query: 58 LTIKNVQKS-DSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-Q 115
L I N K+ D+G Y+ IA N G + KL+ + + + T+ +
Sbjct: 63 LLINNPNKTQDAGTYQCIATNSFG--------TIVSREAKLQFAYLENFKTRTRSTVSVR 114
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT---YLLRLEINNPTK 172
G +V+ C P P + + + +++ + ++T Y+ ++E K
Sbjct: 115 RGQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE-----K 165
Query: 173 DDGGNYRCNACNSIGESNA---NIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMK 228
D GNY C N++ L + + P ++ P +P E GT ++++
Sbjct: 166 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 225
Query: 229 CKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
C P P + W +AD + +++ + K I EI + D+G+Y C
Sbjct: 226 CFALGNPVPTILWRRADGKPIARKARRHK---------SNGILEIPNFQQEDAGSYECVA 276
Query: 287 KNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
+N G P +++ + V ECK +P P W
Sbjct: 277 ENSRGKNVAKGQLTFYAQ-------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 329
Query: 347 HEGKELQQTDRI-----SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
G L DRI + N+T+ + L D G+Y+C +N HG + ++
Sbjct: 330 KNGDPLLTRDRIQIEQGTLNITI------VNL-------SDAGMYQCVAENKHGVIFSSA 376
Query: 402 TLNI 405
L++
Sbjct: 377 ELSV 380
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 115/312 (36%), Gaps = 48/312 (15%)
Query: 102 GKAPRFPKKPT-----IHQDGDLLVMECVLEASPMPDIIW-YQGTKVIEDTGRIKMSKKS 155
G P F ++P+ + + + + C ++ +P P I W GT V I M +
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV-----DIGMDFRY 56
Query: 156 IGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEK 213
D LL INNP K D G Y+C A NS G + A L F EN S +
Sbjct: 57 SVVDGSLL---INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 113
Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE----SSKIKIIVNEQDDTYEIIC 269
R G + + C P P + E + + E + Y
Sbjct: 114 RR------GQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKV 163
Query: 270 EITDPIGPDSGTYRCNVKNEFGXXXX----XXXXXXXXXXXPEGDPPTFIEKPKIRSEQG 325
E + D G Y C V N E +P ++ P+ +
Sbjct: 164 EKS-----DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 218
Query: 326 GKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G V +EC P+P I+W +GK + + R K + LE+ + ++ED G
Sbjct: 219 GTTVKLECFALGNPVPTILWRRADGKPIARKAR--------RHKSNGILEIPNFQQEDAG 270
Query: 385 LYKCNIKNFHGE 396
Y+C +N G+
Sbjct: 271 SYECVAENSRGK 282
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 309 GDPPTFIEKPK-----IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT 363
G P F+++P + SE+ K V + C+VK P P I W G ++ ++V
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV- 58
Query: 364 LKGDKYHIRLEVKDPRK-EDTGLYKCNIKNFHGEL-NANLTLNIEMVRFIKYRVRSNKGI 421
+ G L + +P K +D G Y+C N G + + L + K R RS +
Sbjct: 59 VDGS-----LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 113
Query: 422 VGKMGLV 428
G+V
Sbjct: 114 RRGQGMV 120
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 20/133 (15%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
+L I N Q+ D+G Y+ +A+N G+ + L F + +++ IH
Sbjct: 257 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIN----------DIHV 306
Query: 116 DGDLLVM-ECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ V EC P P W + + RI++ + + L I D
Sbjct: 307 AMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT---------LNITIVNLSD 357
Query: 175 GGNYRCNACNSIG 187
G Y+C A N G
Sbjct: 358 AGMYQCVAENKHG 370
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIW---------YQGTKVIEDTGRIKMSKKSIGKD 159
K T +++G + ++ C E P+P+I W +G K ++ GRI++ K G
Sbjct: 8 KNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLD--GRIEV-KGQHGSS 63
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
+ L I + D G Y C A + IG ++ L+ + +AP FI I +
Sbjct: 64 S----LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYYS 112
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLV---KESSKIKIIVNEQDDTYEIICEITDPIG 276
G I + C + P + W + DKLV K ++ +K + ++I EI
Sbjct: 113 WEGNPINISCDVKSNPPASIHW-RRDKLVLPAKNTTNLKTYSTGR----KMILEIAPTSD 167
Query: 277 PDSGTYRCNVKNEFG 291
D G Y C N G
Sbjct: 168 NDFGRYNCTATNHIG 182
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ-- 115
L IK+V+ SDSG Y A ++ G ++ L+ AP+F TI+
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-----------YAPKFISNQTIYYSW 113
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G+ + + C ++++P I W + V+ + S G+ + LEI + +D
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK---MILEIAPTSDNDF 170
Query: 176 GNYRCNACNSIG 187
G Y C A N IG
Sbjct: 171 GRYNCTATNHIG 182
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 329 VVMECKVKAKPMPEIVWFH--EGKELQQTDR-ISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
V + C + +P+PEI W +G + D+ + + +KG L +KD + D+G
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 386 YKCNIKNFHGELNANLTLNIEMV-RFI 411
Y C + G ++ L+IE +FI
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYAPKFI 104
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 65/197 (32%), Gaps = 16/197 (8%)
Query: 225 IQMKCKCSAKPRPEVKWFKA-DKLV----KESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
+ + C +P PE+ W +A D +S +I V Q + + I D DS
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL--HIKDVKLSDS 75
Query: 280 GTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
G Y C + G P FI I G + + C VK+ P
Sbjct: 76 GRYDCEAASRIGGHQKSMYLDIEYA-------PKFISNQTIYYSWEGNPINISCDVKSNP 128
Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
I W + L + + G K + LE+ D G Y C N G
Sbjct: 129 PASIHWRRDKLVLPAKNTTNLKTYSTGRK--MILEIAPTSDNDFGRYNCTATNHIGTRFQ 186
Query: 400 NLTLNIEMVRFIKYRVR 416
L + V Y V+
Sbjct: 187 EYILALADVPSSPYGVK 203
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIW---------YQGTKVIEDTGRIKMSKKSIGKD 159
K T +++G + ++ C E P+P+I W +G K ++ GRI++ K G
Sbjct: 8 KNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLD--GRIEV-KGQHGSS 63
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
+ L I + D G Y C A + IG ++ L+ + +AP FI I +
Sbjct: 64 S----LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYYS 112
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLV---KESSKIKIIVNEQDDTYEIICEITDPIG 276
G I + C + P + W + DKLV K ++ +K + ++I EI
Sbjct: 113 WEGNPINISCDVKSNPPASIHW-RRDKLVLPAKNTTNLKTYSTGR----KMILEIAPTSD 167
Query: 277 PDSGTYRCNVKNEFG 291
D G Y C N G
Sbjct: 168 NDFGRYNCTATNHIG 182
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ-- 115
L IK+V+ SDSG Y A ++ G ++ L+ AP+F TI+
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-----------YAPKFISNQTIYYSW 113
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G+ + + C ++++P I W + V+ + S G+ + LEI + +D
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK---MILEIAPTSDNDF 170
Query: 176 GNYRCNACNSIG 187
G Y C A N IG
Sbjct: 171 GRYNCTATNHIG 182
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 329 VVMECKVKAKPMPEIVWFH--EGKELQQTDR-ISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
V + C + +P+PEI W +G + D+ + + +KG L +KD + D+G
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 386 YKCNIKNFHGELNANLTLNIEMV-RFI 411
Y C + G ++ L+IE +FI
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYAPKFI 104
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 59/176 (33%), Gaps = 16/176 (9%)
Query: 225 IQMKCKCSAKPRPEVKWFKA-DKLV----KESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
+ + C +P PE+ W +A D +S +I V Q + + I D DS
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL--HIKDVKLSDS 75
Query: 280 GTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
G Y C + G P FI I G + + C VK+ P
Sbjct: 76 GRYDCEAASRIGGHQKSMYLDIEYA-------PKFISNQTIYYSWEGNPINISCDVKSNP 128
Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
I W + L + + G K + LE+ D G Y C N G
Sbjct: 129 PASIHWRRDKLVLPAKNTTNLKTYSTGRK--MILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 11/209 (5%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P FI+ P SG + C+ + +P+P + W K K V S + ++I E DD
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVI--EFDDGAGS 63
Query: 268 ICEITD-PIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
+ I + D Y C N G P+ P+++ +
Sbjct: 64 VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKA 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ M C P PEI WF K+ D + N +K + L+++ + D G Y
Sbjct: 124 RTATMLCAAGGNPDPEISWF---KDFLPVDPATSNGRIKQLRSGA-LQIESSEESDQGKY 179
Query: 387 KCNIKNFHG---ELNANLTLNIEMVRFIK 412
+C N G ANL + + V K
Sbjct: 180 ECVATNSAGTRYSAPANLYVRVRRVAGTK 208
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 16/189 (8%)
Query: 101 GGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
G P F K P G + C P P I W + K + + R ++ + G
Sbjct: 3 GDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGA 61
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
+ +LR++ +D+ Y C A NS+GE N + L+ E PS P++
Sbjct: 62 GS-VLRIQPLRVQRDEA-IYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKV 119
Query: 219 NESGTLIQMKCKCSAKPRPEVKWFK---------ADKLVKE--SSKIKIIVNEQDDTYEI 267
E M C P PE+ WFK ++ +K+ S ++I +E+ D +
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKY 179
Query: 268 ICEITDPIG 276
C T+ G
Sbjct: 180 ECVATNSAG 188
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 80/214 (37%), Gaps = 20/214 (9%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLV---KESSKIKIIVNEQD 262
F P +E P + G + CK +P P ++W+K + V K+ + ++
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRS 322
+ + PD G Y C +N G + F + P
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD-----FRQNPSDVM 122
Query: 323 EQGGKLVVMECK-VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
G+ VMEC+ + P P I W +G L D +T++G K I RK
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE---RITIRGGKLMITYT----RKS 175
Query: 382 DTGLYKCNIKNFHGELN---ANLTLNIEMVRFIK 412
D G Y C N GE A LT+ +E F+K
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTV-LERPSFVK 208
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 18/185 (9%)
Query: 105 PRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI--GKDT 160
PR + P+ I G+ + C E P P I WY+G + +E S + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
+ LR+ ++ D G Y C A N +GE A++ A F + P +
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGE-----AVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 221 SGTLIQMKCKCS-AKPRPEVKW--------FKADKLVKESSKIKIIVNEQDDTYEIICEI 271
G M+C+ P P + W K +++ K+ I + D + +C
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVG 184
Query: 272 TDPIG 276
T+ +G
Sbjct: 185 TNMVG 189
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 33/189 (17%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDR---LSSTLVQDQSRLYYLAVLTIKNVQKSDSG 69
EG PT IE ++KG +D+ S ++ L++L ++ + + D G
Sbjct: 34 EGRPTPTIE-------WYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK-SRPDEG 85
Query: 70 EYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--IHQDGDLLVMEC-VL 126
Y +A+N GE S D L+V + F + P+ + G+ VMEC
Sbjct: 86 VYVCVARNYLGEAVS--------HDASLEVAILRD-DFRQNPSDVMVAVGEPAVMECQPP 136
Query: 127 EASPMPDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185
P P I W + ++D RI + +L I K D G Y C N
Sbjct: 137 RGHPEPTISWKKDGSPLDDKDERITIRGG---------KLMITYTRKSDAGKYVCVGTNM 187
Query: 186 IGESNANIA 194
+GE + +A
Sbjct: 188 VGERESEVA 196
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 82/209 (39%), Gaps = 22/209 (10%)
Query: 201 ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260
E GA P I KP+ G + C P P + W K K V ++ + V E
Sbjct: 1 ETGA-HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-SGTQSRYTVLE 58
Query: 261 QDDTYEIICEITDPI--GPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDP-----PT 313
Q I+ +P+ G D Y C +N G EGD P
Sbjct: 59 QPGGISIL--RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY----EGDKTPAGFPV 112
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
+ P R + G V+M CK P P I W K + D + +LK D + L
Sbjct: 113 ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI---KNQTKVDMSNPRYSLK-DGF---L 165
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLT 402
++++ R+ED G Y+C +N G ++ T
Sbjct: 166 QIENSREEDQGKYECVAENSMGTEHSKAT 194
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 101 GGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
G P +KP + G + C P P I+W + G KV R + ++ G
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALN-FQGGENGAGFAPSFIEKPR 215
+LR+E +DD Y C A N +G++ +A+ L ++G + AGF P + P
Sbjct: 63 --ISILRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTIYEGDKTPAGF-PVITQGPG 118
Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
E G + M CK P P + W K V S N + + +I +
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS-------NPRYSLKDGFLQIENSR 171
Query: 276 GPDSGTYRCNVKNEFG 291
D G Y C +N G
Sbjct: 172 EEDQGKYECVAENSMG 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 55 LAVLTIKNVQKS-DSGEYKVIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPT 112
+++L I+ V+ D Y+ +A+N G+ S+ L E D K P G P + P
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGD---KTPAG-FPVITQGPG 118
Query: 113 --IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG-KDTYLLRLEINN 169
+ + G ++M C +P P+I W I++ ++ MS KD +L +I N
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYW------IKNQTKVDMSNPRYSLKDGFL---QIEN 169
Query: 170 PTKDDGGNYRCNACNSIGESNA 191
++D G Y C A NS+G ++
Sbjct: 170 SREEDQGKYECVAENSMGTEHS 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP I KP+ + + G + C + P P IVW GK++ T + G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNI 405
+R+E ++D Y+C +N G+ ++A+ TL I
Sbjct: 66 LRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI 100
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 11/209 (5%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P FI++P+ SG + C+ + P+P V W K K V S + + I E D++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETI--EFDESAGA 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
+ I P D Y C +N G P P+++ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ M C P PEI WF K+ D + N +K + L+++ + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGA-LQIESSEETDQGKY 179
Query: 387 KCNIKNFHG---ELNANLTLNIEMVRFIK 412
+C N G ANL + + V K
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVRRVAGTK 208
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 13/195 (6%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIW-YQGTKVIEDTGRIKMSKKSIG 157
G + PRF K+P I G + C P P + W +G KV +S G
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-FQGGENGAGFAPSFIEKPRI 216
+LR++ +D+ Y C A NS+GE + L + + +GF P+ P++
Sbjct: 63 A---VLRIQPLRTPRDEN-VYECVAQNSVGEITVHAKLTVLREDQLPSGF-PNIDMGPQL 117
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
E M C S P PE+ WFK V S+ I + +I E ++
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI--ESSEET- 174
Query: 277 PDSGTYRCNVKNEFG 291
D G Y C N G
Sbjct: 175 -DQGKYECVATNSAG 188
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGD 367
+PP FI++PK + G + C+ P P + W +GK++ Q+ + I ++ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES-AGA 63
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
I+ ++ PR E+ +Y+C +N GE+ + L +
Sbjct: 64 VLRIQ-PLRTPRDEN--VYECVAQNSVGEITVHAKLTV 98
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 8/189 (4%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P FI++P+ SG + C+ + P+P V W K K V S + + I E D++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETI--EFDESAGA 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
+ I P D Y C +N G P P+++ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ M C P PEI WF K+ D + N +K + L+++ + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGA-LQIESSEETDQGKY 179
Query: 387 KCNIKNFHG 395
+C N G
Sbjct: 180 ECVATNSAG 188
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 13/195 (6%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
G + PRF K+P I G + C P P + W + G KV +S G
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-FQGGENGAGFAPSFIEKPRI 216
+LR++ +D+ Y C A NS+GE + L + + +GF P+ P++
Sbjct: 63 A---VLRIQPLRTPRDEN-VYECVAQNSVGEITVHAKLTVLREDQLPSGF-PNIDMGPQL 117
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
E M C S P PE+ WFK V S+ I + +I E ++
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI--ESSEET- 174
Query: 277 PDSGTYRCNVKNEFG 291
D G Y C N G
Sbjct: 175 -DQGKYECVATNSAG 188
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGD 367
+PP FI++PK + G + C+ P P + W +GK++ Q+ + I ++ + G
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES-AGA 63
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
I+ ++ PR E+ +Y+C +N GE+ + L +
Sbjct: 64 VLRIQ-PLRTPRDEN--VYECVAQNSVGEITVHAKLTV 98
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP FI+ P+ S G+ M+ KV P P++ W+ G+ +Q D V+ KG +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG-LHS 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ EV R D G Y C KN GE + L++
Sbjct: 64 LIFEVV--RASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
GA P FI+ P + + G +M K S P P+V W+ + V+ K+IV+E+
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK- 59
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFG 291
+ +I E+ D+G Y C KN G
Sbjct: 60 GLHSLIFEVVR--ASDAGAYACVAKNRAG 86
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 105 PRF---PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE--DTGRIKMSKKSIGKD 159
PRF P+ +I +G M+ + P PD+ WY + ++ D ++ +S+K +
Sbjct: 6 PRFIQVPENMSI-DEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL--- 61
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
+ L E+ + D G Y C A N GE+ + L+ E
Sbjct: 62 -HSLIFEVVRAS--DAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 38 SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
SD L +V ++ L L + V+ SD+G Y +AKN+ GE + TV L+
Sbjct: 48 SDDLHKMIVSEKG----LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIV 258
G +GF P F++ P + + G L +M CK S P P++ W K V+ S K++V
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV 60
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
E II +T D+G Y C N G
Sbjct: 61 RENGVHSLIIEPVTS---RDAGIYTCIATNRAG 90
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
P F++ P + Q GKL M+CKV P P++ W +GK ++ + + ++ + H
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS--AHKMLVRENGVH- 66
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
L ++ D G+Y C N G+ + +L L
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 102 GKAPRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
G P F + P T+ Q+G L M+C + P PD+ W K + R + K + +
Sbjct: 7 GFRPHFLQAPGDLTV-QEGKLCRMDCKVSGLPTPDLSWQLDGKPV----RPDSAHKMLVR 61
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENG 203
+ + L I T D G Y C A N G+++ ++ L E+G
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 95/260 (36%), Gaps = 16/260 (6%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
G + PRF K+P I G + C P P + W + G KV +S G
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-FQGGENGAGFAPSFIEKPRI 216
+LR++ +D+ Y C A NS+GE + L + + +GF P+ P++
Sbjct: 63 A---VLRIQPLRTPRDEN-VYECVAQNSVGEITVHAKLTVLREDQLPSGF-PNIDMGPQL 117
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
E M C S P PE+ WFK V S+ I + +I E ++
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI--ESSEET- 174
Query: 277 PDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
D G Y C N G + P F P G V + C
Sbjct: 175 -DQGKYECVATNSAGVRYSSPANLYVRV---QNVAPRFSILPMSHEIMPGGNVNITCVAV 230
Query: 337 AKPMPEIVWFHEGKELQQTD 356
PMP + W ++L D
Sbjct: 231 GSPMPYVKWMQGAEDLTPED 250
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 5/189 (2%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P F P SG + C+ + PRP++ W K K V S + V E DD
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV---SNQRFEVIEFDDGSGS 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
+ I P D Y C N G PT P+++ +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ M C P PEI WF + + ++ L+ + L+++ + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA-LQIEQSEESDQGKY 182
Query: 387 KCNIKNFHG 395
+C N G
Sbjct: 183 ECVATNSAG 191
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 16/198 (8%)
Query: 101 GGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
G PRF + P G + C P P I+W + K + + R ++ + G
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-RFEVIEFDDGS 61
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-FQGGENGAGFAPSFIEKPRII 217
+ L + P D Y C A N++GE + + L + + GF P+ P++
Sbjct: 62 GSVLRIQPLRTPR--DEAIYECVASNNVGEISVSTRLTVLREDQIPRGF-PTIDMGPQLK 118
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS----KIKIIVNEQDDTYEIICEITD 273
E M C S P PE+ WFK D L ++S +IK + +E +I E ++
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQLRSESIGALQI--EQSE 175
Query: 274 PIGPDSGTYRCNVKNEFG 291
D G Y C N G
Sbjct: 176 E--SDQGKYECVATNSAG 191
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDK 368
PP F P ++ G + C+ P P+IVW +GK++ Q+ + I ++ G
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFD---DGSG 62
Query: 369 YHIRLE-VKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+R++ ++ PR D +Y+C N GE++ + L +
Sbjct: 63 SVLRIQPLRTPR--DEAIYECVASNNVGEISVSTRLTV 98
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 14/192 (7%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P FI+KP SG + C+ + P+P V W K K V S + + I E D++
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETI--EFDESAGA 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
+ I P D Y C +N G P P+++ +
Sbjct: 64 VLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKEDT 383
+ M C P PEI WF K+ D + N +K +R L+++ + D
Sbjct: 124 RTATMLCAASGNPDPEITWF---KDFLPVDPSTSNGRIK----QLRSGGLQIESSEETDQ 176
Query: 384 GLYKCNIKNFHG 395
G Y+C N G
Sbjct: 177 GKYECVASNSAG 188
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDK 368
PP FI+KP + G + C+ P P + W +GK++ Q+ + I ++ + G
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES-AGAV 64
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
I+ ++ PR E+ +Y+C +N HGE+ + L +
Sbjct: 65 LRIQ-PLRTPRDEN--IYECVAQNPHGEVTVHAKLTV 98
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 33/153 (21%)
Query: 56 AVLTIKNVQKS-DSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
AVL I+ ++ D Y+ +A+N +GE + L ED ++P P P I
Sbjct: 63 AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLRED---QLP-------PGFPNID 112
Query: 115 QDGDLLVME--------CVLEASPMPDIIWYQGTKVIEDT---GRIKMSKKSIGKDTYLL 163
L V+E C +P P+I W++ ++ + GRIK +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSG-------- 164
Query: 164 RLEINNPTKDDGGNYRCNACNSIG---ESNANI 193
L+I + + D G Y C A NS G S AN+
Sbjct: 165 GLQIESSEETDQGKYECVASNSAGVRYSSPANL 197
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 28/180 (15%)
Query: 122 MECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
+ C + P P + WY QG ++I D + ++ + G +L I + T DD Y+
Sbjct: 22 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTDDDATVYQV 77
Query: 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES------GTLIQMKCKCSAK 234
A N G + +L + P+ I P+ + G ++ +K S K
Sbjct: 78 RATNQGGSVSGTASLEVE--------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 129
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG---PDSGTYRCNVKNEFG 291
P P + W K L+ + ++IV + P G D+G Y KN FG
Sbjct: 130 PDPVITWQKGQDLIDNNGHYQVIVTRS------FTSLVFPNGVERKDAGFYVVCAKNRFG 183
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
AP F E+ R + + + CK + P+P VKW++ K + + +K + E Y
Sbjct: 1 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGY 59
Query: 266 E--IICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSE 323
II +TD D+ Y+ N+ G E + P I PK
Sbjct: 60 HQLIIASVTD---DDATVYQVRATNQGGSVSGTASL--------EVEVPAKIHLPKTLEG 108
Query: 324 QG------GKLVVMECKVKAKPMPEIVWFHEGKEL 352
G G++V ++ KP P I W +G++L
Sbjct: 109 MGAVHALRGEVVSIKIPFSGKPDPVITW-QKGQDL 142
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ-D 116
L I +V D+ Y+V A N+ G S T +L E K+ +P +H
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLP----KTLEGMGAVHALR 116
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G+++ ++ P P I W +G +I++ G ++ I ++ + N + D G
Sbjct: 117 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDAG 172
Query: 177 NYRCNACNSIGESNANIALN 196
Y A N G + L+
Sbjct: 173 FYVVCAKNRFGIDQKTVELD 192
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 34/205 (16%)
Query: 101 GGKAPRFPKK----PTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKS 155
G AP F ++ +Q LV C + P P + WY QG ++I D + ++ +
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLV--CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
G +L I + T DD Y+ A N G + +L + P+ I P+
Sbjct: 59 GGYH----QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE--------VPAKIHLPK 106
Query: 216 IIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
+ G ++ +K S KP P + W K L+ + ++IV
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS------FT 160
Query: 270 EITDPIG---PDSGTYRCNVKNEFG 291
+ P G D+G Y KN FG
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFG 185
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 21/157 (13%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
AP F E+ R + + + CK + P+P VKW++ K + + +K + E
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKG 59
Query: 264 TYE--IICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIR 321
Y II +TD D+ Y+ N+ G E + P I PK
Sbjct: 60 GYHQLIIASVTD---DDATVYQVRATNQGGSVSGTASL--------EVEVPAKIHLPKTL 108
Query: 322 SEQG------GKLVVMECKVKAKPMPEIVWFHEGKEL 352
G G++V ++ KP P I W +G++L
Sbjct: 109 EGMGAVHALRGEVVSIKIPFSGKPDPVITW-QKGQDL 144
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 34/205 (16%)
Query: 101 GGKAPRFPKK----PTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKS 155
G AP F ++ +Q LV C + P P + WY QG ++I D + ++ +
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLV--CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
G +L I + T DD Y+ A N G + +L + P+ I P+
Sbjct: 59 GG----YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE--------VPAKIHLPK 106
Query: 216 IIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
+ G ++ +K S KP P + W K L+ + ++IV
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS------FT 160
Query: 270 EITDPIG---PDSGTYRCNVKNEFG 291
+ P G D+G Y KN FG
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFG 185
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 21/157 (13%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
AP F E+ R + + + CK + P+P VKW++ K + + +K + E
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKG 59
Query: 264 TYE--IICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIR 321
Y II +TD D+ Y+ N+ G E + P I PK
Sbjct: 60 GYHQLIIASVTD---DDATVYQVRATNQGGSVSGTASL--------EVEVPAKIHLPKTL 108
Query: 322 SEQG------GKLVVMECKVKAKPMPEIVWFHEGKEL 352
G G++V ++ KP P I W +G++L
Sbjct: 109 EGMGAVHALRGEVVSIKIPFSGKPDPVITW-QKGQDL 144
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ-QTDRISWNVTLKGDKYH 370
P FI KP+ + G V +EC++ A P P++ W + +Q TDRIS + +
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS---LYQDNTGR 72
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ L +KD K+D G Y + N G N L++
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 103 KAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKD 159
+AP F KP + +GD + +EC + A P P + W + ++++ +T RI + + + G+
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN 202
T L++ ++N K D G Y +A N G + N L+ N
Sbjct: 74 TLLIK-DVN---KKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVK-ESSKIKIIVNEQDDTY 265
AP FI KP+ G ++++C+ SA P P++ W + +++V+ + +I + QD+T
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY---QDNTG 71
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFG 291
+ I D D+G Y + NE G
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAG 97
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
V++KP E+ W+H G ELQ++ +I + T + LE+ D +D+G Y+ N+
Sbjct: 32 VQSKPTAEVKWYHNGVELQESSKIHYTNT----SGVLTLEILDCHTDDSGTYRAVCTNYK 87
Query: 395 GELNANLTLNI 405
GE + TL++
Sbjct: 88 GEASDYATLDV 98
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 126 LEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185
+++ P ++ WY ++++ +I + S +L LEI + DD G YR N
Sbjct: 32 VQSKPTAEVKWYHNGVELQESSKIHYTNTS-----GVLTLEILDCHTDDSGTYRAVCTNY 86
Query: 186 IGESNANIALNFQGGE 201
GE++ L+ GG+
Sbjct: 87 KGEASDYATLDVTGGD 102
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
+KP EVKW+ ++ESSKI T EI+ TD DSGTYR N G
Sbjct: 34 SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD----DSGTYRAVCTNYKG 88
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 12 LEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
++ +PT +++ YH G L+ S ++ T + S + L +L + DSG Y
Sbjct: 32 VQSKPTAEVK------WYHNGVELQESSKIHYT---NTSGVLTLEIL---DCHTDDSGTY 79
Query: 72 KVIAKNKNGEGSSTVNLNFSEED 94
+ + N GE S L+ + D
Sbjct: 80 RAVCTNYKGEASDYATLDVTGGD 102
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 212 EKPRIIPNESGTLIQMK----------CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQ 261
EKP + P + T++ M+ CK P PEV WFK D VKES +I +E+
Sbjct: 36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEE 95
Query: 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
+ I E+ G D Y C N G
Sbjct: 96 GNCSLTISEV---CGDDDAKYTCKAVNSLG 122
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G +C +E P P+++W++ ++++ ++ G L I+ DD
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN----CSLTISEVCGDDD 110
Query: 176 GNYRCNACNSIGESNANIAL 195
Y C A NS+GE+ L
Sbjct: 111 AKYTCKAVNSLGEATCTAEL 130
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G +CKV+ P PE++WF + ++++ + +G + L + + +D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAK 112
Query: 386 YKCNIKNFHGELNANLTLNIEMV 408
Y C N GE L +E +
Sbjct: 113 YTCKAVNSLGEATCTAELLVETM 135
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 212 EKPRIIPNESGTLIQMK----------CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQ 261
EKP + P + T++ M CK P PEV WFK D VKES +I +E+
Sbjct: 36 EKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEE 95
Query: 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
+ I E+ G D Y C N G
Sbjct: 96 GNCSLTISEV---CGDDDAKYTCKAVNSLG 122
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G +C +E P P+++W++ ++++ ++ G L I+ DD
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN----CSLTISEVCGDDD 110
Query: 176 GNYRCNACNSIGESNANIAL 195
Y C A NS+GE+ L
Sbjct: 111 AKYTCKAVNSLGEATCTAEL 130
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G +CKV+ P PE++WF + ++++ + +G + L + + +D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAK 112
Query: 386 YKCNIKNFHGELNANLTLNIEMV 408
Y C N GE L +E +
Sbjct: 113 YTCKAVNSLGEATCTAELLVETM 135
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 207 APSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
+P IE P + NE TL CK KP P ++WFK + V + K V +D
Sbjct: 9 SPRIIEHPTDLVVKKNEPATL---NCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSE 323
+ D G Y C KN G + F +PK
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD-----FRVEPKDTRV 120
Query: 324 QGGKLVVMEC-KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR------LEVK 376
G+ ++EC K P P ++W +G L +S+ G +R L +
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF-----GASSRVRIVDGGNLLIS 175
Query: 377 DPRKEDTGLYKCNIKNFHG 395
+ D G YKC +N G
Sbjct: 176 NVEPIDEGNYKCIAQNLVG 194
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
P IE P + + + CKV+ KP P I WF +G+ + ++ S V K
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVR 409
++ +++D G Y C KN G+ ++ + +L I ++R
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 12 LEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
+EG+P IE + G + +++ S + L++ T++ ++ D GEY
Sbjct: 33 VEGKPEPTIE------WFKDGEPVSTNEKKSHRVQFKDGALFFYR--TMQGKKEQDGGEY 84
Query: 72 KVIAKNKNGEGSS---TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMEC-VLE 127
+AKN+ G+ S ++ + +D +++ PK + + G+ ++EC +
Sbjct: 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVE---------PKDTRVAK-GETALLECGPPK 134
Query: 128 ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187
P P +IW + ++D + S + L I+N D GNY+C A N +G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 188 ESNANIA 194
++ A
Sbjct: 195 TRESSYA 201
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 24/200 (12%)
Query: 103 KAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
++PR + PT + + + + C +E P P I W++ + + T K +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPV-STNEKKSHRVQFKDGA 66
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
+ + DGG Y C A N +G+ A++ A F +P+
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQ-----AVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 221 SGTLIQMKC-KCSAKPRPEVKWFK----ADKL----VKESSKIKIIVNEQDDTYEIICEI 271
G ++C P P + W K D L SS+++I+ D ++
Sbjct: 122 KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV-----DGGNLLISN 176
Query: 272 TDPIGPDSGTYRCNVKNEFG 291
+PI D G Y+C +N G
Sbjct: 177 VEPI--DEGNYKCIAQNLVG 194
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 207 APSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
+P IE P + NE TL CK KP P ++WFK + V + K V +D
Sbjct: 9 SPRIIEHPTDLVVKKNEPATL---NCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSE 323
+ D G Y C KN G + F +PK
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD-----FRVEPKDTRV 120
Query: 324 QGGKLVVMEC-KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR------LEVK 376
G+ ++EC K P P ++W +G L +S+ G +R L +
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF-----GASSRVRIVDGGNLLIS 175
Query: 377 DPRKEDTGLYKCNIKNFHG 395
+ D G YKC +N G
Sbjct: 176 NVEPIDEGNYKCIAQNLVG 194
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
P IE P + + + CKV+ KP P I WF +G+ + ++ S V K
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVR 409
++ +++D G Y C KN G+ ++ + +L I ++R
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 12 LEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
+EG+P IE + G + +++ S + L++ T++ ++ D GEY
Sbjct: 33 VEGKPEPTIE------WFKDGEPVSTNEKKSHRVQFKDGALFFYR--TMQGKKEQDGGEY 84
Query: 72 KVIAKNKNGEGSS---TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMEC-VLE 127
+AKN+ G+ S ++ + +D +++ PK + + G+ ++EC +
Sbjct: 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVE---------PKDTRVAK-GETALLECGPPK 134
Query: 128 ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187
P P +IW + ++D + S + L I+N D GNY+C A N +G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 188 ESNANIA 194
++ A
Sbjct: 195 TRESSYA 201
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 24/200 (12%)
Query: 103 KAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
++PR + PT + + + + C +E P P I W++ + + T K +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPV-STNEKKSHRVQFKDGA 66
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
+ + DGG Y C A N +G+ A++ A F +P+
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQ-----AVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 221 SGTLIQMKC-KCSAKPRPEVKWFK----ADKL----VKESSKIKIIVNEQDDTYEIICEI 271
G ++C P P + W K D L SS+++I+ D ++
Sbjct: 122 KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV-----DGGNLLISN 176
Query: 272 TDPIGPDSGTYRCNVKNEFG 291
+PI D G Y+C +N G
Sbjct: 177 VEPI--DEGNYKCIAQNLVG 194
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
+G PP F+ +P+ G ++C V +P P +VW G++L ++R+S+ G
Sbjct: 11 QGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA 68
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKN 392
++ + L P D G+Y C +N
Sbjct: 69 EHGLLLTAALP--TDAGVYVCRARN 91
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
G P F+ +PR + SG ++KC +P P V W K + + S ++ D
Sbjct: 12 GSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA----DG 67
Query: 265 YEIICEITDPIGPDSGTYRCNVKN 288
E +T + D+G Y C +N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 35/244 (14%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGS-STVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
+ LTI N D+G YK + ++G S +TVN+ + K+ AP P
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-----KLMFKNAP----TPQEF 112
Query: 115 QDGDLLVMECVLEASPMPDIIW-YQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPT 171
++G+ V+ C + +S P IIW ++G VI +D I +S L+I
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---------YLQIRGIK 163
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES--GTLIQMKC 229
K D G YRC G A +NF+ + P+ + I+ + G + + C
Sbjct: 164 KTDEGTYRCE-----GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC 218
Query: 230 KCSAKPRPEVKWFKADKLV--KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
P P + W K + + +E K I + DD+ E+ D D Y C +
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFS--DDSSELTIRNVDK--NDEAEYVCIAE 274
Query: 288 NEFG 291
N+ G
Sbjct: 275 NKAG 278
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 22/86 (25%)
Query: 3 FPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKN 62
FP+ S+T +GEP + E + + +++ S + LTI+N
Sbjct: 223 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDS----------------------SELTIRN 260
Query: 63 VQKSDSGEYKVIAKNKNGEGSSTVNL 88
V K+D EY IA+NK GE ++++L
Sbjct: 261 VDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 30/193 (15%)
Query: 238 EVKWFK--ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXX 295
++ WF +KL +I ++ N+ D + I + D+G Y+C V E G
Sbjct: 34 DISWFSPNGEKLSPNQQRISVVWNDDDSS---TLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 296 XXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT 355
F P + + G+ V+ C V + P I+W H+G++
Sbjct: 91 ATVNVKIFQKL------MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD---- 140
Query: 356 DRISWNVTLKGDKYHI-----RLEVKDPRKEDTGLYKCNIKNF-HGELNANLTLNIEMVR 409
V LK D I L+++ +K D G Y+C + GE+N +I+++
Sbjct: 141 ------VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFK---DIQVIV 191
Query: 410 FIKYRVRSNKGIV 422
+ V++ + IV
Sbjct: 192 NVPPTVQARQSIV 204
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 100/286 (34%), Gaps = 44/286 (15%)
Query: 133 DIIWYQ--GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG--- 187
DI W+ G K+ + RI + + D L I N DD G Y+C G
Sbjct: 34 DISWFSPNGEKLSPNQQRISV----VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS 89
Query: 188 ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL 247
E+ N+ + FQ F P + G + C + P + W +
Sbjct: 90 EATVNVKI-FQ--------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140
Query: 248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXP 307
V ++ IV + +I D GTYRC G
Sbjct: 141 VILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCE-----GRILARGEINFKDIQVI 190
Query: 308 EGDPPTFIEKPKIRSEQG--GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365
PPT + I + G+ V + C P P + W +G+ ++ + +
Sbjct: 191 VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE--------E 242
Query: 366 GDKYHI------RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
D+ HI L +++ K D Y C +N GE +A++ L +
Sbjct: 243 DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L I+ ++K+D G Y+ G + +NF + + VP R G
Sbjct: 157 LQIRGIKKTDEGTYRC-----EGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLG 211
Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
+ + C + P P + W + + IE+ + +K I D L I N K+D
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEE--EDDEKHIFSDDSS-ELTIRNVDKNDEAE 268
Query: 178 YRCNACNSIGESNANIAL 195
Y C A N GE +A+I L
Sbjct: 269 YVCIAENKAGEQDASIHL 286
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 37/183 (20%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD- 116
L +++V SD G Y + +NK G T L+ E R P +P +
Sbjct: 74 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-------------RSPHRPILQAGL 120
Query: 117 --------GDLLVMECVLEASPMPDIIWYQ-----GTKVIED-TGRIKMSKKSIGKDTYL 162
G + C + + P I W + G+KV D T + + K I +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 163 -LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
+RL + N ++ DGG Y C A N IG + L+ G P E+ + +E+
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG--------PRAAEEELVEADEA 232
Query: 222 GTL 224
G++
Sbjct: 233 GSV 235
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 21/207 (10%)
Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
+++ + ++ +C + P P + W K + + +I I + + ++ E P
Sbjct: 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI-KLRHQQWSLVMESVVP 81
Query: 275 IGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKL---VVM 331
D G Y C V+N+FG E P I + + + Q L V
Sbjct: 82 --SDRGNYTCVVENKFGSIRQTYTLDVL-----ERSPHRPILQAGLPANQTAVLGSDVEF 134
Query: 332 ECKVKAKPMPEIVWFHE----GKELQQTDRISWNVTLK-----GDKYHIRLEVKDPRKED 382
CKV + P I W G ++ D + LK + +RL + + + D
Sbjct: 135 HCKVYSDAQPHIQWLKHVEVNGSKV-GPDGTPYVTVLKSWISESVEADVRLRLANVSERD 193
Query: 383 TGLYKCNIKNFHGELNANLTLNIEMVR 409
G Y C NF G L++ R
Sbjct: 194 GGEYLCRATNFIGVAEKAFWLSVHGPR 220
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 141/397 (35%), Gaps = 92/397 (23%)
Query: 57 VLTIKNVQKSDSGEYKVIAKN--KNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI- 113
VLTI V + D+G Y VI N + S V+L + VP P+ +K I
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSL-------VVYVP----PQIGEKSLIS 430
Query: 114 ----HQDGDLLVMECVLEASPMPDII-WY------------QGTKV-----------IED 145
+Q G + C + A P P I WY Q V +ED
Sbjct: 431 PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVED 490
Query: 146 ---TGRIKMSKKSI----GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+I+++K GK+ + L I + Y+C A N +G I+ +
Sbjct: 491 FQGGNKIEVNKNQFALIEGKNKTVSTLVIQ--AANVSALYKCEAVNKVGRGERVISFHVT 548
Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA-------------- 244
G P +P + P E + + + C + W+K
Sbjct: 549 RG-------PEITLQPDMQPTEQES-VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600
Query: 245 ------DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXX 298
D L K ++ + N +D +I E+ + D G Y C ++
Sbjct: 601 PVCKNLDTLWKLNATM--FSNSTNDI--LIMELKNASLQDQGDYVCLAQDR---KTKKRH 653
Query: 299 XXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI 358
E PT + ++ G+ + + C P P+I+WF + + L + I
Sbjct: 654 CVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713
Query: 359 SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
V G++ L ++ RKED GLY C + G
Sbjct: 714 ---VLKDGNR---NLTIRRVRKEDEGLYTCQACSVLG 744
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 34/226 (15%)
Query: 45 LVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA 104
L++ +++ V+ NV S YK A NK G G ++ + + +
Sbjct: 506 LIEGKNKTVSTLVIQAANV----SALYKCEAVNKVGRGERVISFHVT-----------RG 550
Query: 105 PRFPKKPTIH-QDGDLLVMECVLEASPMPDIIWYQ-------------GTKVIEDTGRI- 149
P +P + + + + + C + S ++ WY+ T V ++ +
Sbjct: 551 PEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLW 610
Query: 150 KMSKKSIGKDTY-LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP 208
K++ T +L +E+ N + D G+Y C A + + + E AP
Sbjct: 611 KLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER---VAP 667
Query: 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI 254
+ G I++ C S P P++ WFK ++ + E S I
Sbjct: 668 TITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPK--KPT 112
+ ++ +KN D G+Y +A+++ + V +L V AP +
Sbjct: 624 ILIMELKNASLQDQGDYVCLAQDRKTKKRHCVV-------RQLTVLERVAPTITGNLENQ 676
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQGTK-VIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171
G+ + + C +P P I+W++ + ++ED+G + L I
Sbjct: 677 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--------NLTIRRVR 728
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGE 201
K+D G Y C AC+ +G + +G +
Sbjct: 729 KEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 70/194 (36%), Gaps = 27/194 (13%)
Query: 54 YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST-VNLNFSEEDGKLKVPGGKAPRFPKKPT 112
+L+ LTI V +SD G Y A + G T N F K V G + T
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASS----GLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
+ G+ + + P P+I WY+ +E IK L I ++
Sbjct: 344 V---GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV----------LTIMEVSE 390
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES---GTLIQMKC 229
D GNY N I + + ++ P EK I P +S GT + C
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLV-----VYVPPQIGEKSLISPVDSYQYGTTQTLTC 445
Query: 230 KCSAKPRP-EVKWF 242
A P P + W+
Sbjct: 446 TVYAIPPPHHIHWY 459
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 40/204 (19%)
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG---ENGAGFAPSFIEKPRII 217
+L L I+ T+ D G Y C A + + + + G+G S +E
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME-SLVEA---- 342
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFK------ADKLVKESSKIKIIVNEQDDTYEIICEI 271
G +++ K P PE+KW+K ++ +K + I+ + DT +
Sbjct: 343 --TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVIL 400
Query: 272 TDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIR---SEQGGKL 328
T+PI + ++ ++ PP EK I S Q G
Sbjct: 401 TNPISKEKQSHVVSLVVYV--------------------PPQIGEKSLISPVDSYQYGTT 440
Query: 329 VVMECKVKAKPMP-EIVWFHEGKE 351
+ C V A P P I W+ + +E
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEE 464
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD- 116
L +++V SD G Y + +NK G T L+ E R P +P +
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-------------RSPHRPILQAGL 228
Query: 117 --------GDLLVMECVLEASPMPDIIWYQ-----GTKVIEDTGRIKMSKKSIGKDTY-- 161
G + C + + P I W + G+KV D K+ G +T
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Query: 162 -LLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
L L ++N T +D G Y C A NSIG S+ + L
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 35/227 (15%)
Query: 142 VIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC-----------------NACN 184
V + TG + + +G RL++ N + +D G Y C +A +
Sbjct: 44 VKDGTGLVPSERVLVGPQ----RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99
Query: 185 SIGESNANIALNFQGGENGAGF--APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWF 242
S + + G + GA + P ++K +++ + ++ +C + P P + W
Sbjct: 100 SGDDEDGEDEAEDTGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWL 158
Query: 243 KADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXX 302
K + + +I I + + ++ E P D G Y C V+N+FG
Sbjct: 159 KNGREFRGEHRIGGI-KLRHQQWSLVMESVVP--SDRGNYTCVVENKFGSIRQTYTLDVL 215
Query: 303 XXXXPEGDPPTFIEKPKIRSEQGGKL---VVMECKVKAKPMPEIVWF 346
E P I + + + Q L V CKV + P I W
Sbjct: 216 -----ERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
K+ + V C P P I W G+E + RI + L+ ++ + +E P
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG-GIKLRHQQWSLVMESVVP 189
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N G + TL++
Sbjct: 190 --SDRGNYTCVVENKFGSIRQTYTLDV 214
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 23/183 (12%)
Query: 122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN 181
C +P P I W + + E G ++ + + L +E P+ D GNY C
Sbjct: 143 FRCPAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQWSLVMESVVPS--DRGNYTCV 198
Query: 182 ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL---IQMKCKCSAKPRPE 238
N G L+ + P I + + N++ L ++ CK + +P
Sbjct: 199 VENKFGSIRQTYTLDVL---ERSPHRP--ILQAGLPANQTAVLGSDVEFHCKVYSDAQPH 253
Query: 239 VKWFK-----ADKLVKESSKIKIIV-----NEQDDTYEIICEITDPIGPDSGTYRCNVKN 288
++W K K+ + + ++ N D E++ + + D+G Y C N
Sbjct: 254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL-SLHNVTFEDAGEYTCLAGN 312
Query: 289 EFG 291
G
Sbjct: 313 SIG 315
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
+G PP F+ P+ G ++C V +P P +VW G++L ++R+S+ G
Sbjct: 11 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA 68
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKN 392
++ + L P D G+Y C +N
Sbjct: 69 EHGLLLTAALP--TDAGVYVCRARN 91
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
G P F+ PR + SG ++KC +P P V W K + + S ++ D
Sbjct: 12 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA----DG 67
Query: 265 YEIICEITDPIGPDSGTYRCNVKN 288
E +T + D+G Y C +N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 106 RFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL 165
RFP+ P G ++CV+ P P ++W +G + + + R +S + G + LL L
Sbjct: 19 RFPR-PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASER--LSFPADGAEHGLL-L 74
Query: 166 EINNPTKDDGGNYRCNACN 184
PT D G Y C A N
Sbjct: 75 TAALPT--DAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
+G PP F+ P+ G ++C V +P P +VW G++L ++R+S+ G
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA 67
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKN 392
++ + L P D G+Y C +N
Sbjct: 68 EHGLLLTAALP--TDAGVYVCRARN 90
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
G P F+ PR + SG ++KC +P P V W K + + S ++ D
Sbjct: 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA----DG 66
Query: 265 YEIICEITDPIGPDSGTYRCNVKN 288
E +T + D+G Y C +N
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARN 90
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 106 RFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL 165
RFP+ P G ++CV+ P P ++W +G + + + R +S + G + LL L
Sbjct: 18 RFPR-PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASER--LSFPADGAEHGLL-L 73
Query: 166 EINNPTKDDGGNYRCNACN 184
PT D G Y C A N
Sbjct: 74 TAALPT--DAGVYVCRARN 90
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
G PP P S GK++ + C +P PE+ W G+++ ++ +++ D
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
L + D +K+D GLY ++ N G +A + ++I +
Sbjct: 65 --TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 102
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
G P P I + G ++ + C + +P PEV W + + + + + DD
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFG 291
+I I D D G Y ++ NEFG
Sbjct: 65 TTLI--IMDVQKQDGGLYTLSLGNEFG 89
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G +L + C P P++ W G + I + + ++ T L+ +++ K DG
Sbjct: 21 EGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ---KQDG 77
Query: 176 GNYRCNACNSIGESNANIALNFQ 198
G Y + N G +A + ++ +
Sbjct: 78 GLYTLSLGNEFGSDSATVNIHIR 100
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 47 QDQSRLYY-----LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
Q+Q R + L L I +VQK D G Y + N+ G S+TVN++
Sbjct: 51 QEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 98
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
+ KP+ + G+ C +P+P + W +G+ L + R T KY
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT----KYKSTF 66
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
E+ + D G Y ++N G+ A TL I+
Sbjct: 67 EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI 167
P+ T++ +G+ C + P+P + W + +V+ + R +++ Y EI
Sbjct: 15 PRSMTVY-EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-----YKSTFEI 68
Query: 168 NNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
++ D GNY NS G+ A L Q
Sbjct: 69 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
+ KPR + G + C +P P V W + +++ S++ ++ + T+
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF---- 66
Query: 270 EITDPIGPDSGTYRCNVKNEFG 291
EI+ D G Y V+N G
Sbjct: 67 EISSVQASDEGNYSVVVENSEG 88
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
+GEP + KG +L S R T + Y + I +VQ SD G Y
Sbjct: 33 DGEPVPTV------TWLRKGQVLSTSARHQVTTTK------YKSTFEISSVQASDEGNYS 80
Query: 73 VIAKNKNGEGSSTVNLNF 90
V+ +N G+ + L
Sbjct: 81 VVVENSEGKQEAEFTLTI 98
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
G PP P S GK++ + C +P PE+ W G+++ ++ +++ D
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
L + D +K+D GLY ++ N G +A + ++I +
Sbjct: 63 --TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
G G P P I + G ++ + C + +P PEV W + + + + + D
Sbjct: 1 GPGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFG 291
D +I I D D G Y ++ NEFG
Sbjct: 61 DLTTLI--IMDVQKQDGGLYTLSLGNEFG 87
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G +L + C P P++ W G + I + + ++ T L+ +++ K DG
Sbjct: 19 EGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ---KQDG 75
Query: 176 GNYRCNACNSIGESNANIALNFQ 198
G Y + N G +A + ++ +
Sbjct: 76 GLYTLSLGNEFGSDSATVNIHIR 98
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 47 QDQSRLYY-----LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
Q+Q R + L L I +VQK D G Y + N+ G S+TVN++
Sbjct: 49 QEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--ELQQTDRISWNVTL- 364
E PP +E P G+ + CK + +P P I W+ G+ E + D S + L
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
G + +R+ + D G+Y C +N+ GE
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 105 PRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI--GKDT 160
PR + P+ I G+ + C E P P I WY+G + +E S + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGES 189
+ LR+ ++ D G Y C A N +GE+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLV---KESSKIKIIVNEQD 262
F P +E P + G + CK +P P ++W+K + V K+ + ++
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFG 291
+ + PD G Y C +N G
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 124/345 (35%), Gaps = 71/345 (20%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNK-NGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
LT+ NV ++D+ YK +N + S +V LN + G AP T ++
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV--------LYGPDAPTISPLNTSYR 216
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
G+ L + C ++P W+ G + S + L I N T ++
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVN-------GTFQQSTQ---------ELFIPNITVNNS 260
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAP---SFIEKPRIIPNESGTLIQMKCKCS 232
G+Y C A NS + LN +A FI P E + + C+
Sbjct: 261 GSYTCQAHNS------DTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCE-- 312
Query: 233 AKPRPEVK-----WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
PE++ W+ ++ + S ++++ + + T ++ + +GP Y C ++
Sbjct: 313 ----PEIQNTTYLWWVNNQSLPVSPRLQL--SNDNRTLTLLSVTRNDVGP----YECGIQ 362
Query: 288 NEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347
NE D PT P + G + + C + P + W
Sbjct: 363 NELSVDHSDPVILNVLYGP---DDPTI--SPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417
Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
+G Q T L + + ++++GLY C N
Sbjct: 418 DGNIQQHTQ---------------ELFISNITEKNSGLYTCQANN 447
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
T ++ + S+ K V K +P P +W +GK + Q + L DK
Sbjct: 11 TGLQDTTVSSDSVAKFAV---KATGEPRPTAIWTKDGKAITQGGKYK----LSEDKGGFF 63
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
LE+ D+GLY C +KN G ++++ L I+ +
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
S ++ + K + +PRP W K K + + K K+ +D EI DSG
Sbjct: 20 SDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKL----SEDKGGFFLEIHKTDTSDSG 75
Query: 281 TYRCNVKNEFG 291
Y C VKN G
Sbjct: 76 LYTCTVKNSAG 86
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 130 PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
P P IW + K I G+ K+S+ G LEI+ D G Y C NS G
Sbjct: 34 PRPTAIWTKDGKAITQGGKYKLSEDKGG-----FFLEIHKTDTSDSGLYTCTVKNSAGSV 88
Query: 190 NANIALNFQG 199
+++ L +
Sbjct: 89 SSSCKLTIKA 98
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 69/185 (37%), Gaps = 24/185 (12%)
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYR 283
++ KC S P+P ++W K K K +I Y I D + P D G Y
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRI----GGYKVRYATWSIIMDSVVPSDKGNYT 90
Query: 284 CNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKAKPM 340
C V+NE+G E P I + P ++ G V CKV + P
Sbjct: 91 CIVENEYGSINHTYQLDVV-----ERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQ 145
Query: 341 PEIVWFHE----GKELQQTDRISWNVTLK------GDKYHIRLEVKDPRKEDTGLYKCNI 390
P I W G ++ D + + LK DK L +++ ED G Y C
Sbjct: 146 PHIQWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 204
Query: 391 KNFHG 395
N G
Sbjct: 205 GNSIG 209
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Query: 53 YYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT 112
Y + + +V SD G Y I +N+ G + T L+ E + P T
Sbjct: 71 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAG---LPANKT 127
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQ-----GTKVIEDTGRIKMSKKSIGKDTY---LLR 164
+ ++ M C + + P P I W + G+K+ D K+ G +T +
Sbjct: 128 VALGSNVEFM-CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV 186
Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIAL 195
L + N + +D G Y C A NSIG S+ + L
Sbjct: 187 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWL 217
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
P P +EK K+ + K V +C P P + W GKE + RI ++
Sbjct: 14 PYWTSPEKMEK-KLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIG-GYKVRY 71
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ I ++ P D G Y C ++N +G +N L++
Sbjct: 72 ATWSIIMDSVVP--SDKGNYTCIVENEYGSINHTYQLDV 108
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 21/182 (11%)
Query: 122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN 181
+C +P P + W + K + RI K + T+ + ++ P+ D GNY C
Sbjct: 37 FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYK--VRYATWSIIMDSVVPS--DKGNYTCI 92
Query: 182 ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKW 241
N G N L+ + + + + G+ ++ CK + P+P ++W
Sbjct: 93 VENEYGSINHTYQLDVVERSPHRPILQAGLPANKTV--ALGSNVEFMCKVYSDPQPHIQW 150
Query: 242 FKADKLVKESSKI--------KII----VNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
K ++ SKI +I+ VN D E++ + + D+G Y C N
Sbjct: 151 LKHIEV--NGSKIGPDNLPYVQILKTAGVNTTDKEMEVL-HLRNVSFEDAGEYTCLAGNS 207
Query: 290 FG 291
G
Sbjct: 208 IG 209
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 22/184 (11%)
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
++ KC S P+P ++W K K K +I + T+ II + P D G Y C
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGY-KVRYATWSIIMDSVVP--SDKGNYTC 90
Query: 285 NVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKAKPMP 341
V+NE+G E P I + P ++ G V CKV + P P
Sbjct: 91 IVENEYGSINHTYQLDVV-----ERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 145
Query: 342 EIVWFHE----GKELQQTDRISWNVTLK------GDKYHIRLEVKDPRKEDTGLYKCNIK 391
I W G ++ D + + LK DK L +++ ED G Y C
Sbjct: 146 HIQWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAG 204
Query: 392 NFHG 395
N G
Sbjct: 205 NSIG 208
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Query: 53 YYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT 112
Y + + +V SD G Y I +N+ G + T L+ E + P T
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAG---LPANKT 126
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQ-----GTKVIEDTGRIKMSKKSIGKDTY---LLR 164
+ ++ M C + + P P I W + G+K+ D K+ G +T +
Sbjct: 127 VALGSNVEFM-CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV 185
Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIAL 195
L + N + +D G Y C A NSIG S+ + L
Sbjct: 186 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWL 216
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
P P +EK K+ + K V +C P P + W GKE + RI ++
Sbjct: 13 PYWTSPEKMEK-KLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIG-GYKVRY 70
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ I ++ P D G Y C ++N +G +N L++
Sbjct: 71 ATWSIIMDSVVP--SDKGNYTCIVENEYGSINHTYQLDV 107
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 21/182 (11%)
Query: 122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN 181
+C +P P + W + K + RI K + T+ + ++ P+ D GNY C
Sbjct: 36 FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYK--VRYATWSIIMDSVVPS--DKGNYTCI 91
Query: 182 ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKW 241
N G N L+ + + + + G+ ++ CK + P+P ++W
Sbjct: 92 VENEYGSINHTYQLDVVERSPHRPILQAGLPANKTV--ALGSNVEFMCKVYSDPQPHIQW 149
Query: 242 FKADKLVKESSKI--------KII----VNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
K ++ SKI +I+ VN D E++ + + D+G Y C N
Sbjct: 150 LKHIEV--NGSKIGPDNLPYVQILKTAGVNTTDKEMEVL-HLRNVSFEDAGEYTCLAGNS 206
Query: 290 FG 291
G
Sbjct: 207 IG 208
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 18 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 74
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 75 VPSDKGNYTCVVENEYGSINHTYHLDV 101
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
M G K R+ V++Q L +++V SD G Y + +N+ G + T
Sbjct: 42 MRWLKNGKEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDKGNYTCVVENEYGSINHT 96
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-----GT 140
+L+ E + P + GD+ + C + + P I W + G+
Sbjct: 97 YHLDVVERSPHRPI---LQAGLPANASTVVGGDVEFV-CKVYSDAQPHIQWIKHVEKNGS 152
Query: 141 KVIEDTGRIKMSKKSIGKDTYLLRLE---INNPTKDDGGNYRCNACNSIGES 189
K D K+ G +T +E I N T +D G Y C A NSIG S
Sbjct: 153 KYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 204
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 24 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 80
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKA 337
Y C V+NE+G E P I + P S G V CKV +
Sbjct: 81 NYTCVVENEYGSINHTYHLDVV-----ERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 135
Query: 338 KPMPEIVWF 346
P I W
Sbjct: 136 DAQPHIQWI 144
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 75
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
M G K R+ V++Q L +++V SD G Y + +N+ G + T
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDKGNYTCVVENEYGSINHT 97
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-----GT 140
+L+ E + P + GD+ + C + + P I W + G+
Sbjct: 98 YHLDVVERSPHRPI---LQAGLPANASTVVGGDVEFV-CKVYSDAQPHIQWIKHVEKNGS 153
Query: 141 KVIEDTGRIKMSKKSIGKDTYLLRLE---INNPTKDDGGNYRCNACNSIGES 189
K D K+ G +T +E I N T +D G Y C A NSIG S
Sbjct: 154 KYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 11/129 (8%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 25 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 81
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKA 337
Y C V+NE+G E P I + P S G V CKV +
Sbjct: 82 NYTCVVENEYGSINHTYHLDVV-----ERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 136
Query: 338 KPMPEIVWF 346
P I W
Sbjct: 137 DAQPHIQWI 145
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 75
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 35/181 (19%)
Query: 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
M G K R+ V++Q L +++V SD G Y + +N+ G + T
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDKGNYTCVVENEYGSINHT 97
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD---------GDLLVMECVLEASPMPDIIW 136
+L+ E R+P +P + G + C + + P I W
Sbjct: 98 YHLDVVE-------------RWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144
Query: 137 YQ-----GTKVIEDTGRIKMSKKSIGKDTYLLRLE---INNPTKDDGGNYRCNACNSIGE 188
+ G+K D K+ G +T +E I N T +D G Y C A NSIG
Sbjct: 145 IKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 204
Query: 189 S 189
S
Sbjct: 205 S 205
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 25 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 81
Query: 281 TYRCNVKNEFG 291
Y C V+NE+G
Sbjct: 82 NYTCVVENEYG 92
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 75
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 5/126 (3%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 25 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 81
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
Y C V+NE+G P P S G V CKV +
Sbjct: 82 NYTCVVENEYGSINHTYHLDVVERSRHR--PILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 341 PEIVWF 346
P I W
Sbjct: 140 PHIQWI 145
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
M G K R+ V++Q L +++V SD G Y + +N+ G + T
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPSDKGNYTCVVENEYGSINHT 97
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-----GT 140
+L+ E + P + GD+ + C + + P I W + G+
Sbjct: 98 YHLDVVERSRHRPI---LQAGLPANASTVVGGDVEFV-CKVYSDAQPHIQWIKHVEKNGS 153
Query: 141 KVIEDTGRIKMSKKSIGKDTYLLRLE---INNPTKDDGGNYRCNACNSIGES 189
K D K+ G +T +E I N T +D G Y C A NSIG S
Sbjct: 154 KYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 17 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 73
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 74 VPSDKGNYTCVVENEYGSINHTYHLDV 100
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
M G K R+ V++Q L +++V SD G Y + +N+ G + T
Sbjct: 41 MRWLKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPSDKGNYTCVVENEYGSINHT 95
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-----GT 140
+L+ E + P + GD+ + C + + P I W + G+
Sbjct: 96 YHLDVVERSRHRPI---LQAGLPANASTVVGGDVEFV-CKVYSDAQPHIQWIKHVEKNGS 151
Query: 141 KVIEDTGRIKMSKKSIGKDTYLLRLE---INNPTKDDGGNYRCNACNSIGES 189
K D K+ G +T +E I N T +D G Y C A NSIG S
Sbjct: 152 KYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 203
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 5/126 (3%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 23 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 79
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
Y C V+NE+G P P S G V CKV +
Sbjct: 80 NYTCVVENEYGSINHTYHLDVVERSRHR--PILQAGLPANASTVVGGDVEFVCKVYSDAQ 137
Query: 341 PEIVWF 346
P I W
Sbjct: 138 PHIQWI 143
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 22/179 (12%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG----P 277
G ++ C+ S+ P P V W ++ V S D+ + ++ I
Sbjct: 17 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS---------DNRFAMLANNNLQILNINKS 67
Query: 278 DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
D G YRC + E P P +K + + G+ + C+
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMP---QKSFNATAERGEEMTFSCRASG 124
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
P P I WF GK +++ ++ LKG + L V++ D G Y C N GE
Sbjct: 125 SPEPAISWFRNGKLIEENEKY----ILKGS--NTELTVRNIINSDGGPYVCRATNKAGE 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 28/165 (16%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ--KSDSGEYKVIAKNKNGEGSST 85
+YH + +SD +R LA ++ + KSD G Y+ G +
Sbjct: 37 LYHNEEVTTISD----------NRFAMLANNNLQILNINKSDEGIYRC-----EGRVEAR 81
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVI 143
++F + + VP A P+K + G+ + C SP P I W++ K+I
Sbjct: 82 GEIDFRDIIVIVNVP--PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 139
Query: 144 EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
E+ + + G +T L + N DGG Y C A N GE
Sbjct: 140 EENEKYILK----GSNT---ELTVRNIINSDGGPYVCRATNKAGE 177
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 25/186 (13%)
Query: 111 PTIHQDGDLLVMECVLEASPMPDIIW-YQGTKV--IEDTGRIKMSKKSIGKDTYLLRLEI 167
P + G+ + C + +SP P + W Y +V I D R M + + +
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN-RFAMLANNNLQILNI----- 64
Query: 168 NNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP--SFIEKPRIIPNESGTLI 225
K D G YRC G A ++F+ P S +K E G +
Sbjct: 65 ---NKSDEGIYRCE-----GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116
Query: 226 QMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
C+ S P P + WF+ KL++E+ K + + + T + + I D G Y C
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT------VRNIINSDGGPYVCR 170
Query: 286 VKNEFG 291
N+ G
Sbjct: 171 ATNKAG 176
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 83
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDV 110
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 12/192 (6%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 89
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
Y C V+NE+G P P S G V CKV +
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSRHR--PILQAGLPANASTVVGGDVEFVCKVYSDAQ 147
Query: 341 PEIVWF-HEGKELQQ--TDRISWNVTLKGDKYHIR----LEVKDPRKEDTGLYKCNIKNF 393
P I W H K + D + + LK + L + + + D G Y C + N+
Sbjct: 148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 207
Query: 394 HGELNANLTLNI 405
G+ N + L +
Sbjct: 208 IGQANQSAWLTV 219
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 21/179 (11%)
Query: 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
M G K R+ V++Q L +++V SD G Y + +N+ G + T
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDKGNYTCVVENEYGSINHT 105
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
+L+ E + P + GD+ + C + + P I W K +E
Sbjct: 106 YHLDVVERSRHRPILQAG---LPANASTVVGGDVEFV-CKVYSDAQPHIQW---IKHVEK 158
Query: 146 TGR---------IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
G +K+ K S + L + N T+ D G Y C N IG++N + L
Sbjct: 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 51/138 (36%), Gaps = 14/138 (10%)
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
K+ + IN P +D G Y C + + AN + + AP R
Sbjct: 51 KNASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKA-------APDITGHKRSE 102
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE----SSKIKIIVNEQDDTYEIICEITD 273
G M CK P PE W K + V E SS I+N+++ T I +
Sbjct: 103 NKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ- 161
Query: 274 PIGPDSGTYRCNVKNEFG 291
I D G Y CN N G
Sbjct: 162 -ITEDPGEYECNATNSIG 178
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTK-VIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+G +M C P P+ +W + V E+ I K+ Y +N +D
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 175 GGNYRCNACNSIGESNANIAL 195
G Y CNA NSIG ++ + L
Sbjct: 166 PGEYECNATNSIGSASVSTVL 186
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 329 VVMECKVKAKPMPEIV--WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
V ++C + + + W G EL T + + N+ + +K PR ED+G Y
Sbjct: 21 VTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINK---------PRAEDSGEY 71
Query: 387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRS 432
C + +F AN T+ ++ I RS G+ ++ +S
Sbjct: 72 HC-VYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS 116
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 66/178 (37%), Gaps = 24/178 (13%)
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYR 283
++ KC S P P ++W K K K +I Y I D + P D G Y
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRI----GGYKVRYATWSIIMDSVVPSDKGNYT 89
Query: 284 CNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKAKPM 340
C V+NE+G E P I + P ++ G V CKV + P
Sbjct: 90 CIVENEYGSINHTYQLDVV-----ERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQ 144
Query: 341 PEIVWFHE----GKELQQTDRISWNVTLK------GDKYHIRLEVKDPRKEDTGLYKC 388
P I W G ++ D + + LK DK L +++ ED G Y C
Sbjct: 145 PHIQWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTC 201
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Query: 53 YYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT 112
Y + + +V SD G Y I +N+ G + T L+ E + P T
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAG---LPANKT 126
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQ-----GTKVIEDTGRIKMSKKSIGKDTY---LLR 164
+ ++ M C + + P P I W + G+K+ D K+ G +T +
Sbjct: 127 VALGSNVEFM-CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEV 185
Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIAL 195
L + N + +D G Y C A NSIG S+ + L
Sbjct: 186 LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWL 216
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
P P +EK K+ + K V +C P P + W GKE + RI ++
Sbjct: 13 PYWTSPEKMEK-KLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIG-GYKVRY 70
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ I ++ P D G Y C ++N +G +N L++
Sbjct: 71 ATWSIIMDSVVP--SDKGNYTCIVENEYGSINHTYQLDV 107
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 21/182 (11%)
Query: 122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN 181
+C +P P + W + K + RI K + T+ + ++ P+ D GNY C
Sbjct: 36 FKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYK--VRYATWSIIMDSVVPS--DKGNYTCI 91
Query: 182 ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKW 241
N G N L+ + + + + G+ ++ CK + P+P ++W
Sbjct: 92 VENEYGSINHTYQLDVVERSPHRPILQAGLPANKTV--ALGSNVEFMCKVYSDPQPHIQW 149
Query: 242 FKADKLVKESSKI--------KII----VNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
K ++ SKI +I+ VN D E++ + + D+G Y C N
Sbjct: 150 LKHIEV--NGSKIGPDNLPYVQILKTAGVNTTDKEMEVL-HLRNVSFEDAGEYTCLAGNS 206
Query: 290 FG 291
G
Sbjct: 207 IG 208
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 20 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 76
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 77 VPSDKGNYTCVVENEYGSINHTYHLDV 103
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 26 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 82
Query: 281 TYRCNVKNEFG 291
Y C V+NE+G
Sbjct: 83 NYTCVVENEYG 93
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI ++ + + +E P
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVP 74
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 75 --SDKGNYTCVVENEYGSINHTYHLDV 99
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P ++W K K K+ +I ++ + +I E P D G
Sbjct: 22 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKG 78
Query: 281 TYRCNVKNEFG 291
Y C V+NE+G
Sbjct: 79 NYTCVVENEYG 89
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C PMP + W GKE +Q RI K H L ++
Sbjct: 21 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESV 77
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 78 VPSDKGNYTCVVENEYGSINHTYHLDV 104
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI---KIIVNEQDDTYEIICEITDPIGP 277
+ ++ +C P P ++W K K K+ +I K+ ++ + +I E P
Sbjct: 27 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV----RNQHWSLIMESVVP--S 80
Query: 278 DSGTYRCNVKNEFG 291
D G Y C V+NE+G
Sbjct: 81 DKGNYTCVVENEYG 94
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
V C PMP + W GKE +Q RI K H L ++ D G Y C
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQHWSLIMESVVPSDKGNYTC 93
Query: 389 NIKNFHGELNANLTLNI 405
++N +G +N L++
Sbjct: 94 VVENEYGSINHTYHLDV 110
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 18/191 (9%)
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
++ +C P P ++W K K K+ +I ++ + +I E P D G Y C
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVRNQHWSLIMESVVP--SDKGNYTC 93
Query: 285 NVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKAKPMP 341
V+NE+G E P I + P S G V CKV + P
Sbjct: 94 VVENEYGSINHTYHLDVV-----ERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP 148
Query: 342 EIVWF-HEGKELQQ--TDRISWNVTLKGDKYHIR----LEVKDPRKEDTGLYKCNIKNFH 394
I W H K + D + + LK + L + + + D G Y C + N+
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Query: 395 GELNANLTLNI 405
G+ N + L +
Sbjct: 209 GQANQSAWLTV 219
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 21/179 (11%)
Query: 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
M G K R+ V++Q L +++V SD G Y + +N+ G + T
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDKGNYTCVVENEYGSINHT 105
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
+L+ E + P + GD+ + C + + P I W K +E
Sbjct: 106 YHLDVVERSPHRPILQAG---LPANASTVVGGDVEFV-CKVYSDAQPHIQW---IKHVEK 158
Query: 146 TGR---------IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
G +K+ K S + L + N T+ D G Y C N IG++N + L
Sbjct: 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLE 374
+ KP+ + G+ C +P+P + W +G+ L + R T KY E
Sbjct: 18 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT----KYKSTFE 73
Query: 375 VKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ + D G Y ++N G+ A TL I+
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
A + KPR + G + C +P P V W + +++ S++ ++ + T+
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 72
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFG 291
EI+ D G Y V+N G
Sbjct: 73 ----EISSVQASDEGNYSVVVENSEG 94
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI 167
P+ T+++ G+ C + P+P + W + +V+ + R +++ Y EI
Sbjct: 21 PRSMTVYE-GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-----YKSTFEI 74
Query: 168 NNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
++ D GNY NS G+ A L Q
Sbjct: 75 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
+GEP + KG +L S R T + Y + I +VQ SD G Y
Sbjct: 39 DGEPVPTV------TWLRKGQVLSTSARHQVTTTK------YKSTFEISSVQASDEGNYS 86
Query: 73 VIAKNKNGEGSSTVNLNFSE 92
V+ +N G+ + L +
Sbjct: 87 VVVENSEGKQEAEFTLTIQK 106
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA-------PSFIEK-- 213
+ L+IN PT +D G Y + G++ ++ G +A + EK
Sbjct: 59 IWLQINEPTPNDKGKYVMELFD--GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 116
Query: 214 -------PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P ++ + G + + C P PEV W K +K + ++ + Y
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYF 176
Query: 267 IICEITDPIGPDSGTYRCNVKNEFG 291
I ++ DSG Y VKN++G
Sbjct: 177 TINGVST---ADSGKYGLVVKNKYG 198
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
P + + Q GK + + C V P PE+ W K L QTD + Y +
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY---FTING 180
Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNI 405
D+G Y +KN +G ++ T+++
Sbjct: 181 VSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 34/192 (17%)
Query: 23 NFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKV-IAKNKNGE 81
+ ++N H GS ++ SDR+ + + +Q L I +D G+Y + + K G
Sbjct: 32 DLKVNWSHNGSAIRYSDRVKTGVTGEQ------IWLQINEPTPNDKGKYVMELFDGKTGH 85
Query: 82 GSSTVNLN-------FSE----------EDGKLKVPGGKAPRFPKKPTIHQDGDLLVMEC 124
TV+L+ ++E E + +V GG P TI Q+G L + C
Sbjct: 86 -QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG----LPDVVTI-QEGKALNLTC 139
Query: 125 VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184
+ P P++ W + K + T + K G+ Y IN + D G Y N
Sbjct: 140 NVWGDPPPEVSWLKNEKALAQTDHCNL-KFEAGRTAYFT---INGVSTADSGKYGLVVKN 195
Query: 185 SIGESNANIALN 196
G ++ ++
Sbjct: 196 KYGSETSDFTVS 207
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 229 CKCSAKPRP-EVKWFK--ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
C+ + + ++ WF +KL +I ++ N+ D + I + D+G Y+C
Sbjct: 24 CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS---TLTIYNANIDDAGIYKCV 80
Query: 286 VKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVW 345
V E G + PT P+ E G+ V+ C V + P I+W
Sbjct: 81 VTAEDGTQSEATVNVKIFQKLMFKNAPT----PQEFKE--GEDAVIVCDVVSSLPPTIIW 134
Query: 346 FHEGKELQQTDRISWNVTLKGDKYHI-----RLEVKDPRKEDTGLYKCNIKNF-HGELN 398
H+G++ V LK D I L+++ +K D G Y+C + GE+N
Sbjct: 135 KHKGRD----------VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 183
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGS-STVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
+ LTI N D+G YK + ++G S +TVN+ + K+ AP P
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-----KLMFKNAP----TPQEF 112
Query: 115 QDGDLLVMECVLEASPMPDIIW-YQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPT 171
++G+ V+ C + +S P IIW ++G VI +D I +S L+I
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---------YLQIRGIK 163
Query: 172 KDDGGNYRC 180
K D G YRC
Sbjct: 164 KTDEGTYRC 172
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P T+ DG V+ CV SP+P I+W + G V RIK + + L+
Sbjct: 15 PVNQTVAVDGTF-VLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV--------LQ 65
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
I D G Y C A GE+ + + Q E G P P +IP+
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ--EFGVPVQPPRPTDPNLIPS 116
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 134 IIWY--QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN- 190
I WY QG K+I T R+ + K+ + RL I N +D G YRC A ++ G++
Sbjct: 33 IDWYNPQGEKII-STQRVVVQKEGVRS-----RLTIYNANIEDAGIYRCQATDAKGQTQE 86
Query: 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNE--SGTLIQMKCKCSAKPRPEVKWF 242
A + L + + P E G ++ C+ S+ P P V W
Sbjct: 87 ATVVLEIY---------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL 131
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 19/115 (16%)
Query: 278 DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
D+G YRC + G TF E + + G+ + C+V +
Sbjct: 69 DAGIYRCQATDAKGQTQEATVVLEIYQKL------TFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI----RLEVKDPRKEDTGLYKC 388
P P + W + +E+ T+ +++ + L++ + K D G+Y+C
Sbjct: 123 SPAPAVSWLYHNEEV---------TTISDNRFAMLANNNLQILNINKSDEGIYRC 168
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP ++ P ++ +++CK P+P I W EG D + + +G
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRA-TIQEQGT--- 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L++K+ R DTG Y C + GE + + L++
Sbjct: 64 --LQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
L IKN++ SD+G Y +A + +GE S + L+ +E
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P T+ DG L ++C P+P I W +G R + ++ L+
Sbjct: 15 PANQTLAVDGTAL-LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT--------LQ 65
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALN 196
I N D G Y C A +S GE++ + L+
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLD 95
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 90/255 (35%), Gaps = 29/255 (11%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
+ L I K D+G Y+VI K+ G+ S + L E +L + K
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL-VDEAFKELMMEVCKKIALSATDLKI 118
Query: 115 QDGDLLVMECVLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
Q + + D + W I + R+K G + L+IN PT
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-----GVTGEQIWLQINEPTP 173
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFA-------PSFIEK---------PRI 216
+D G Y + G++ ++ G +A + EK P +
Sbjct: 174 NDKGKYVMELFD--GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 231
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ + G + + C P PEV W K +K + + Y I ++
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVST--- 288
Query: 277 PDSGTYRCNVKNEFG 291
DSG Y VKN++G
Sbjct: 289 ADSGKYGLVVKNKYG 303
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 32/191 (16%)
Query: 23 NFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG 82
+ ++N H GS ++ SDR+ + + +Q L I +D G+Y + +
Sbjct: 137 DLKVNWSHNGSAIRYSDRVKTGVTGEQ------IWLQINEPTPNDKGKYVMELFDGKTGH 190
Query: 83 SSTVNLN-------FSE----------EDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECV 125
TV+L+ ++E E + +V GG P TI Q+G L + C
Sbjct: 191 QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG----LPDVVTI-QEGKALNLTCN 245
Query: 126 LEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185
+ P P++ W + K + + K G+ Y IN + D G Y N
Sbjct: 246 VWGDPPPEVSWLKNEKALASDDHCNL-KFEAGRTAYFT---INGVSTADSGKYGLVVKNK 301
Query: 186 IGESNANIALN 196
G ++ ++
Sbjct: 302 YGSETSDFTVS 312
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
P + + Q GK + + C V P PE+ W K L D + Y +
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY---FTING 285
Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNI 405
D+G Y +KN +G ++ T+++
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTVSV 313
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 18/195 (9%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P +W K K K+ +I ++ + +I E P D G
Sbjct: 32 AANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY-KVRNQHWSLIXESVVP--SDKG 88
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKA 337
Y C V+NE+G E P I + P S G V CKV +
Sbjct: 89 NYTCVVENEYGSINHTYHLDVV-----ERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 143
Query: 338 KPMPEIVWF-HEGKELQQ--TDRISWNVTLKGDKYHIR----LEVKDPRKEDTGLYKCNI 390
P I W H K + D + + LK + L + + + D G Y C +
Sbjct: 144 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 203
Query: 391 KNFHGELNANLTLNI 405
N+ G+ N + L +
Sbjct: 204 SNYIGQANQSAWLTV 218
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
++ + V C P P W GKE +Q RI K H L +
Sbjct: 26 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIG---GYKVRNQHWSLIXESV 82
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C ++N +G +N L++
Sbjct: 83 VPSDKGNYTCVVENEYGSINHTYHLDV 109
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 21/173 (12%)
Query: 32 GSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFS 91
G K R+ V++Q L ++V SD G Y + +N+ G + T +L+
Sbjct: 56 GKEFKQEHRIGGYKVRNQHW-----SLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVV 110
Query: 92 EEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR--- 148
E + P + GD+ + C + + P I W K +E G
Sbjct: 111 ERSPHRPILQAG---LPANASTVVGGDVEFV-CKVYSDAQPHIQW---IKHVEKNGSKYG 163
Query: 149 ------IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
+K+ K S + L + N T+ D G Y C N IG++N + L
Sbjct: 164 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 216
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR- 372
F++ P + G V + C+ P+PEI W+ EG+ W+ + D+ HI
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWD-GARLDRVHIHA 82
Query: 373 ---------LEVKDPRKEDTGLYKCNIKN 392
+ + +EDTG Y+C N
Sbjct: 83 TYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 307 PEGDPP-TFIEKP--KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT 363
PEG P T EK ++ + V C P P W GKE +Q RI
Sbjct: 4 PEGAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIG---G 60
Query: 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
K H L + D G Y C ++N +G +N L++
Sbjct: 61 YKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 17/166 (10%)
Query: 32 GSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFS 91
G K R+ V++Q L ++V SD G Y + +N+ G + T +L+
Sbjct: 49 GKEFKQEHRIGGYKVRNQHW-----SLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVV 103
Query: 92 EEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-----GTKVIEDT 146
E + P + GD+ + C + + P I W + G+K D
Sbjct: 104 ERSPHRPI---LQAGLPANASTVVGGDVEFV-CKVYSDAQPHIQWIKHVEKNGSKYGPDG 159
Query: 147 GRIKMSKKSIGKDTYLLRLE---INNPTKDDGGNYRCNACNSIGES 189
K+ G +T +E I N T +D G Y C A NSIG S
Sbjct: 160 LPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ ++ +C P P +W K K K+ +I ++ + +I E P D G
Sbjct: 25 AANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY-KVRNQHWSLIXESVVP--SDKG 81
Query: 281 TYRCNVKNEFG 291
Y C V+NE+G
Sbjct: 82 NYTCVVENEYG 92
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR- 372
F++ P + G V + C+ P+PEI W+ EG+ W+ + D+ HI
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWD-GARLDRVHIHA 82
Query: 373 ---------LEVKDPRKEDTGLYKCNIKN 392
+ + +EDTG Y+C N
Sbjct: 83 TYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 103 KAPRFPKKPTIHQDGDLLVMECVLEASPM--PDIIWYQGTKVIEDTGRIKMSKK---SIG 157
+ PR K T G+ L + CVL + + D WY+ + I + + ++
Sbjct: 5 QTPRTATKET----GESLTINCVLRDASLELKDTGWYRTKLGSTNEQSISIGGRYVETVN 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
K + L I++ +D G Y+C A S+ + N +L F+ GE GAG A
Sbjct: 61 KGSKSFSLRISDLRVEDSGTYKCQAFYSLPLRDYNYSLLFR-GEKGAGTA 109
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
PT + ++ G+ + + C P P+I+WF + + L + I V G++
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI---VLKDGNR--- 64
Query: 372 RLEVKDPRKEDTGLYKC 388
L ++ RKED GLY C
Sbjct: 65 NLTIRRVRKEDEGLYTC 81
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTK-VIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
G+ + + C +P P I+W++ + ++ED+G + L I K+D
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--------NLTIRRVRKEDE 76
Query: 176 GNYRCNACNSIG 187
G Y C AC+ +G
Sbjct: 77 GLYTCQACSVLG 88
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI 254
G I++ C S P P++ WFK ++ + E S I
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 57
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G+ V++C V+ P+P I W G+ +Q R + + L ++D ED G
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYA-RSTCEAGVA------ELHIQDALPEDHGT 78
Query: 386 YKCNIKNFHGELNAN 400
Y C +N G+++ +
Sbjct: 79 YTCLAENALGQVSCS 93
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G V++C + +P+P I W + I+ S G + L I + +D
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQ----YARSTCEAG----VAELHIQDALPEDH 76
Query: 176 GNYRCNACNSIGE 188
G Y C A N++G+
Sbjct: 77 GTYTCLAENALGQ 89
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIV 258
G +G APSF + G ++C P P + W + ++ + S + V
Sbjct: 4 GSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGV 63
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
E I D + D GTY C +N G
Sbjct: 64 AE--------LHIQDALPEDHGTYTCLAENALG 88
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 23/86 (26%)
Query: 3 FPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKN 62
FP+ ++T +GEP +Q + + + + GS L IK
Sbjct: 40 FPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSEL-----------------------IIKK 76
Query: 63 VQKSDSGEYKVIAKNKNGEGSSTVNL 88
V KSD EY IA+NK GE +T++L
Sbjct: 77 VDKSDEAEYICIAENKAGEQDATIHL 102
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 318 PKIRSEQG--------GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS-WNVTLKGDK 368
P +R+ Q + V + C P P + W +G+ ++Q D ++ G +
Sbjct: 12 PSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSE 71
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L +K K D Y C +N GE +A + L +
Sbjct: 72 ----LIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 103 KAPRFPKKPTIHQDGDLLVMECVLEASP--MPDIIWYQGTKVIEDTGRIKMSKK---SIG 157
+ PR K T G+ L + CVL + + D WY+ + I + + ++
Sbjct: 5 QTPRTATKET----GESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
K + L I++ +D G Y+C A S+ + N +L F+ GE GAG A
Sbjct: 61 KGSKSFSLRISDLRVEDSGTYKCQAFYSLPLGDYNYSLLFR-GEKGAGTA 109
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 103 KAPRFPKKPTIHQDGDLLVMECVLEASP--MPDIIWYQGTKVIEDTGRIKMSKK---SIG 157
+ PR K T G+ L + CVL + + D WY+ + I + + ++
Sbjct: 5 QTPRTATKET----GESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
K + L I++ +D G Y+C A S+ + N +L F+ GE GAG A
Sbjct: 61 KGSKSFSLRISDLRVEDSGTYKCQAFYSLLLRDYNYSLLFR-GEKGAGTA 109
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
P + P E+ + ++ G +V KP PE W+ G +++++DRI W
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYW---YWP 57
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ L ++D ED+ N GE +++ L ++
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI 167
P K T+ Q G + + C +E PDI W + V+++ ++ + + + ++ L +
Sbjct: 9 PVKLTVSQ-GQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYI---PVSEQHWIGFLSL 64
Query: 168 NNPTKDDGGNYRCNACNSIGESNAN--IALNFQGGENGAGFAPSFIEKPRIIPNESGTLI 225
+ + D G Y C + GE+ + + L +G P F +P+ +
Sbjct: 65 KSVERSDAGRYWCQVEDG-GETEISQPVWLTVEG-------VPFFTVEPKDLAVPPNAPF 116
Query: 226 QMKCKCSAKPRP-EVKWFKA 244
Q+ C+ P P + W++
Sbjct: 117 QLSCEAVGPPEPVTIVWWRG 136
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G+ V + C V+ P+I W +G +Q D++ + + + L +K + D G
Sbjct: 17 GQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQL--YIPVSEQHWIGFLSLKSVERSDAGR 74
Query: 386 YKCNIKN-FHGELNANLTLNIEMVRFI 411
Y C +++ E++ + L +E V F
Sbjct: 75 YWCQVEDGGETEISQPVWLTVEGVPFF 101
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PPTF +S + G+ V+M +V+ +P P + W + ++ R + +
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR---RFAEEAEGGL 61
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHG 395
RL + + D G Y C N +G
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYG 86
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 101 GGKAPRFPKKPTIHQ---DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
G KAP K + Q +G ++M ++ P P + W + + + R + ++++ G
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR-RFAEEAEG 59
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
L RL I + D G Y C A N G L +G
Sbjct: 60 G---LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 20/148 (13%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD- 116
L I NV+ SD G Y + S FS+ + +P +P +
Sbjct: 68 LYIANVEASDKGNYSCFVSS-----PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD 122
Query: 117 -----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171
G + +EC +P+PDI W + + + T I S L+I N
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV---------LKIFNIQ 173
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQG 199
+D G Y C A N G+ + Q
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G+ V +EC P+P+I W + + T IS + + L++ + + ED G+
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV--------LKIFNIQLEDEGI 179
Query: 386 YKCNIKNFHGE 396
Y+C +N G+
Sbjct: 180 YECEAENIRGK 190
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 99 VPGGK---APRFPKKPTIHQ-DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKK 154
VP G AP+ ++ +G+ + + C + A P I W++ +++ + +
Sbjct: 11 VPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIY 70
Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
+ +YL E+ +++D GNY C A N IG+ + L
Sbjct: 71 NTPSASYL---EVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-IVNEQDDT 264
+AP ++ P + G + + C+ A P + WF+ +L+ S+ I I N +
Sbjct: 18 YAPK-LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFG 291
Y E+T D G Y C N G
Sbjct: 77 Y---LEVTPDSENDFGNYNCTAVNRIG 100
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G V + C+V A P I WF +G+ L ++ N+ + LEV + D G
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYS--NIKIYNTPSASYLEVTPDSENDFGN 90
Query: 386 YKCNIKNFHGELNANLTL 403
Y C N G+ + L
Sbjct: 91 YNCTAVNRIGQESLEFIL 108
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P FI KP G C+ A P V W K D+ +K+S K N D Y +
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND--YGL 434
Query: 268 ICEITDPIGPDSGTYRCNVKNEFG 291
I G D G Y KN +G
Sbjct: 435 T--INRVKGDDKGEYTVRAKNSYG 456
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
P FI KP G+ C+V A P + W + +EL+Q+ + + G+ Y
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDY-- 432
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L + + +D G Y KN +G + LN+
Sbjct: 433 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKV----PGGKAPRFPK 109
LTI V+ D GEY V AKN G V LN + LK P KAP P+
Sbjct: 434 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEPLEPMKKAPSPPR 489
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 105 PRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
PRF KP T +G C + AS P + W++ + ++ + +K K+ G D
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGND--- 431
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP 208
L IN DD G Y A NS G + LN F P
Sbjct: 432 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEP 477
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
P FI KP G+ C+V A P + W + +EL+Q+ + + G+ Y
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDY-- 538
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L + + +D G Y KN +G + LN+
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P FI KP G C+ A P V W K D+ +K+S K N D Y +
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND--YGL 540
Query: 268 ICEITDPIGPDSGTYRCNVKNEFG 291
I G D G Y KN +G
Sbjct: 541 T--INRVKGDDKGEYTVRAKNSYG 562
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFS 91
LTI V+ D GEY V AKN G V LN +
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ AP F K + G + C+ + P+P++ WFK K + S I
Sbjct: 1 GSSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
+ D T + T D G Y N G
Sbjct: 61 DLDGTCSL--HTTASTLDDDGNYTIMAANPQG 90
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQ-QTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G V C+V P P+I WF +GK++ ++D + L G L +D G
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT---CSLHTTASTLDDDG 79
Query: 385 LYKCNIKNFHGELNANLTLNIEMV 408
Y N G ++ L ++ V
Sbjct: 80 NYTIMAANPQGRISCTGRLMVQAV 103
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 30/164 (18%)
Query: 47 QDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPR 106
+++S + Y++ L + ++ ++ G Y + N + + N+ +
Sbjct: 341 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN--------------- 385
Query: 107 FPKKPTIHQDGDLL--VMECVLEASPMPDIIWY---------QGTKVIEDTGRIKMSKKS 155
KP I L+ +++CV P P I WY + + D + S
Sbjct: 386 --TKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPP 443
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
GK +++ I++ G C A N +G+++A F+G
Sbjct: 444 FGK--LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 485
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 24/190 (12%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--I 113
A LTI + + +DSG + A N G + T L V G FP T
Sbjct: 248 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV--------VDKGFINIFPMINTTVF 299
Query: 114 HQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
DG+ + + EA P P+ W + D ++ Y+ L +
Sbjct: 300 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 359
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
+GG Y NS + NA IA N KP I+ + ++C +
Sbjct: 360 TEGGTYTFLVSNS--DVNAAIAFNVYVN-----------TKPEILTYDRLVNGMLQCVAA 406
Query: 233 AKPRPEVKWF 242
P P + W+
Sbjct: 407 GFPEPTIDWY 416
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 30/164 (18%)
Query: 47 QDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPR 106
+++S + Y++ L + ++ ++ G Y + N + + N+ +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN--------------- 410
Query: 107 FPKKPTIHQDGDLL--VMECVLEASPMPDIIWY---------QGTKVIEDTGRIKMSKKS 155
KP I L+ +++CV P P I WY + + D + S
Sbjct: 411 --TKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPP 468
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
GK +++ I++ G C A N +G+++A F+G
Sbjct: 469 FGK--LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 24/190 (12%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--I 113
A LTI + + +DSG + A N G + T L V G FP T
Sbjct: 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEV--------VDKGFINIFPMINTTVF 324
Query: 114 HQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
DG+ + + EA P P+ W + D ++ Y+ L +
Sbjct: 325 VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG 384
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
+GG Y NS + NA IA N KP I+ + ++C +
Sbjct: 385 TEGGTYTFLVSNS--DVNAAIAFNVYVN-----------TKPEILTYDRLVNGMLQCVAA 431
Query: 233 AKPRPEVKWF 242
P P + W+
Sbjct: 432 GFPEPTIDWY 441
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 31/149 (20%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+G +++ C+ + P + +WFK +K + + ++I N D+G
Sbjct: 32 AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVK-------------DAG 78
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEG----------DPPTFIEKPKIRSEQGGKLVV 330
Y C V N F PE +P + G +V
Sbjct: 79 FYVCRVNNNF-TFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLV 137
Query: 331 MECKVKAKPMPEIVWF-------HEGKEL 352
++C P+P WF HE K+L
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLTHETKKL 166
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 58 LTIKNVQKSDSGEYKVI--AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
LT+ NV SD V A+N G +V +N S FP +H
Sbjct: 214 LTLANV-TSDLNRKNVTCWAENDVGRAEVSVQVNVS---------------FPASVQLHT 257
Query: 116 DGDL--LVMECVLEASPMPDIIWYQGTKVIEDTGRI--KMSKKSIGKDTYLLRLEINNPT 171
++ + ++ P P + W V+ +T I + + + + L +N PT
Sbjct: 258 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 317
Query: 172 KDDGGNYRCNACNSIGESNANIALNF 197
+ GNY A N G+++A+I F
Sbjct: 318 HVNNGNYTLLAANPFGQASASIMAAF 343
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 125 VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184
++ +P P + W+ ++ ++ I Y L+++NPT + G+Y A N
Sbjct: 24 TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKN 83
Query: 185 SIGESNANIALNFQG 199
G+ I+ +F G
Sbjct: 84 EYGKDEKQISAHFMG 98
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDT-YEIICEITDPIGPDSGTYRCNVKNEFG 291
P+P ++WF ++ ES I ++ + T Y ++ +P ++G Y KNE+G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD-KYHI 371
TF+E P + VK P P + WF+ G L ++ I + + +YH
Sbjct: 8 TFLESPTSDHHW-----CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG 62
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGE 396
L++ +P + G Y KN +G+
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGK 87
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 10 YTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSG 69
+T++G P ++ ++ G++L S + T + + Y L + N ++G
Sbjct: 23 FTVKGNPKPALQ------WFYNGAILNESKYIC-TKIHVTNHTEYHGCLQLDNPTHMNNG 75
Query: 70 EYKVIAKNKNGEGSSTVNLNF 90
+Y +IAKN+ G+ ++ +F
Sbjct: 76 DYTLIAKNEYGKDEKQISAHF 96
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 210 FIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVK--ESSKIKIIV--NEQDDT 264
F+ P I G ++C+ + P EV W + ++++ +S++ ++ + +EQDD
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD- 63
Query: 265 YEIICE--ITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRS 322
+ ++ + IT D+G Y+C V G EG P F+E+P+ R+
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVF--LGHQTFVSQPGYVGL---EGLP-YFLEEPEDRT 117
Query: 323 EQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
+ C+ + P P +++W + L T G L V P
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPL---------ATAPGHGPQRSLHV--PGLN 166
Query: 382 DTGLYKCNIKNFHG 395
T + C N G
Sbjct: 167 KTSSFSCEAHNAKG 180
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQ-QTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G V C+V P P+I WF +GK++ ++D + L G L +D G
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT---CSLHTTASTLDDDG 78
Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRS 417
Y N G ++ L MV+ + R RS
Sbjct: 79 NYTIMAANPQGRVSCTGRL---MVQAVNQRGRS 108
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIV 258
GG N AP F K + G + C+ + P+P++ WFK K + S I
Sbjct: 1 GGSNAT--APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQ 58
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
+ D T + T D G Y N G
Sbjct: 59 RDLDGTCSL--HTTASTLDDDGNYTIMAANPQG 89
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 126 LEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185
++ +P P + W+ ++ ++ I Y L+++NPT + G+Y A N
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE 84
Query: 186 IGESNANIALNFQG 199
G+ I+ +F G
Sbjct: 85 YGKDEKQISAHFMG 98
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKG-DKYHIRLEVKDPRKEDTGLYKCNIKNF 393
VK P P + WF+ G L ++ I + + +YH L++ +P + G Y KN
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE 84
Query: 394 HGE 396
+G+
Sbjct: 85 YGK 87
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 206 FAPS--FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
FAP+ F+E P ++ I K P+P ++WF ++ ES I ++ +
Sbjct: 3 FAPTITFLESP---TSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 264 T-YEIICEITDPIGPDSGTYRCNVKNEFG 291
T Y ++ +P ++G Y KNE+G
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 10 YTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSG 69
+T++G P ++ ++ G++L S + T + + Y L + N ++G
Sbjct: 23 FTVKGNPKPALQ------WFYNGAILNESKYIC-TKIHVTNHTEYHGCLQLDNPTHMNNG 75
Query: 70 EYKVIAKNKNGEGSSTVNLNF 90
+Y +IAKN+ G+ ++ +F
Sbjct: 76 DYTLIAKNEYGKDEKQISAHF 96
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
P FIE K + + G V++C++ KA P + W + L+ DR S L+ D
Sbjct: 8 PARFIEDVKNQEAREGATAVLQCELSKAAP---VEWRKGSETLRGGDRYS----LRQDGT 60
Query: 370 HIRLEVKDPRKEDTGLYKC 388
L++ DTG Y C
Sbjct: 61 RCELQIHGLSVADTGEYSC 79
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P FIE K + + G V++C++ + E W + L+ DR S L+ D
Sbjct: 8 PARFIEDVKNQEAREGATAVLQCELNSAAPVE--WRKGSETLRDGDRYS----LRQDGTK 61
Query: 371 IRLEVKDPRKEDTGLYKC 388
L+++ DTG Y C
Sbjct: 62 CELQIRGLAMADTGEYSC 79
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 134 IIWY--QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
I WY QG K+I T R+ + K+ + RL I N +D G YRC A ++ G++
Sbjct: 31 IDWYNPQGEKIIS-TQRVVVQKEGVRS-----RLTIYNANIEDAGIYRCQATDAKGQT 82
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 311 PPTFI--EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
PP + E+P++R E +E V+ P P + W H G+ L+++ I +G+
Sbjct: 8 PPRVVSLEEPELRLEH-----CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404
L P + G Y KN G AN T+N
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLG--TANQTIN 96
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 126 LEASPMPDIIWYQGTKVIEDTGRI--KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183
++ P P + W V+ +T I + + + + L +N PT + GNY A
Sbjct: 24 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
Query: 184 NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT 223
N G+++A+I F +N F P E P IP+ + T
Sbjct: 84 NPFGQASASIMAAFM--DNPFEFNP---EDP--IPDTNST 116
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 70/194 (36%), Gaps = 27/194 (13%)
Query: 54 YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST-VNLNFSEEDGKLKVPGGKAPRFPKKPT 112
+L+ LTI V +SD G Y A + G T N F K V G + T
Sbjct: 158 FLSTLTIDGVTRSDQGLYTCAASS----GLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 213
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
+ G+ + + P P+I WY+ +E IK L I ++
Sbjct: 214 V---GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV----------LTIMEVSE 260
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES---GTLIQMKC 229
D GNY N I + + ++ P EK I P +S GT + C
Sbjct: 261 RDTGNYTVILTNPISKEKQSHVVSLV-----VYVPPQIGEKSLISPVDSYQYGTTQTLTC 315
Query: 230 KCSAKPRP-EVKWF 242
A P P + W+
Sbjct: 316 TVYAIPPPHHIHWY 329
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 40/204 (19%)
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG---ENGAGFAPSFIEKPRII 217
+L L I+ T+ D G Y C A + + + + G+G S +E
Sbjct: 158 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME-SLVEA---- 212
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFK------ADKLVKESSKIKIIVNEQDDTYEIICEI 271
G +++ K P PE+KW+K ++ +K + I+ + DT +
Sbjct: 213 --TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVIL 270
Query: 272 TDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIR---SEQGGKL 328
T+PI + ++ ++ PP EK I S Q G
Sbjct: 271 TNPISKEKQSHVVSLVVYV--------------------PPQIGEKSLISPVDSYQYGTT 310
Query: 329 VVMECKVKAKPMP-EIVWFHEGKE 351
+ C V A P P I W+ + +E
Sbjct: 311 QTLTCTVYAIPPPHHIHWYWQLEE 334
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 134 IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI 193
+ WY G + +E++ K I + + L + + TK D G YRC N GE ++
Sbjct: 34 VTWYFGVRQLENS-----EKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88
Query: 194 ALNFQG 199
L +G
Sbjct: 89 ELFVKG 94
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 323 EQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
E+GG V CK++ ++ W+ ++L+ +++ + +T + D I L VKD K
Sbjct: 14 EEGGH-VKYVCKIENYDQSTQVTWYFGVRQLENSEK--YEITYE-DGVAI-LYVKDITKL 68
Query: 382 DTGLYKCNIKNFHGELNANLTLNIEMVR 409
D G Y+C + N +GE ++ L ++ VR
Sbjct: 69 DDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 220 ESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYE---IICEITDPI 275
E G ++ CK + +V W+ + ++ S K +I TYE I + D
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEI-------TYEDGVAILYVKDIT 66
Query: 276 GPDSGTYRCNVKNEFG 291
D GTYRC V N++G
Sbjct: 67 KLDDGTYRCKVVNDYG 82
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 122 MECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR-LEINNPTKDDGGN-Y 178
++C + ++P PD I W V+E + + ++I + ++ L I+N + D Y
Sbjct: 33 IKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY 92
Query: 179 RCNACNSIGESNANIALNFQGGE 201
C A NS G I L QG E
Sbjct: 93 NCTAWNSFGSDTEIIRLKEQGSE 115
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 115 QDGDLLVMECVLEAS--PMPDIIWYQ---GTKVIEDTGRIKMSKKSIGKDTYLLRLEINN 169
+ G+ L + CVL S + WY+ G+ E + +++ + L IN+
Sbjct: 13 ETGESLTINCVLRDSNCALSSTYWYRKKSGSTNEESISKGGRYVETVNSGSKSFSLRIND 72
Query: 170 PTKDDGGNYRCNACNSIGESNANI-ALNFQGG 200
T +D G YRC + G +A ALN Q G
Sbjct: 73 LTVEDSGTYRCKPESRYGSYDAECAALNDQYG 104
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
+AP +E P + G ++KC+ S V W + V K+ + D
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFG 291
T+ D+G Y C V N G
Sbjct: 398 --TLNFTNVTVQDTGMYTCMVSNSVG 421
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 128 ASPMPDIIWY--QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185
++ + + W GT + +++++ S G L N T D G Y C NS
Sbjct: 366 STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT------LNFTNVTVQDTGMYTCMVSNS 419
Query: 186 IGESNANIALNFQG 199
+G + A+ LN G
Sbjct: 420 VGNTTASATLNVTG 433
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
P +E P + G ++C+ + + W + + + D
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDG--- 397
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L + +DTG+Y C + N G A+ TLN+
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD-KLVKESSKIKIIVNEQDDTY 265
AP ++ PR + G + ++KC+ P VKW + ++ +S+ I D T
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFG 291
+ + D+G Y C V N G
Sbjct: 410 ----NFSHVLLSDTGVYTCMVTNVAG 431
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKG 366
+ P ++ P+ + G++ ++C+ PM + W G L R +++
Sbjct: 349 QCSAPFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHP-RISVLN 405
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
D L DTG+Y C + N G NA+ LN+
Sbjct: 406 DG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G L+ + C+++ + I W +G +L +++R + G++ +EV+D D+GL
Sbjct: 18 GDLLQLRCRLR-DDVQSINWLRDGVQLAESNR----TRITGEE----VEVQDSVPADSGL 68
Query: 386 YKCNIKNFHGELNANLTLNI 405
Y C + G ++N+
Sbjct: 69 YACVTSSPSGSDTTYFSVNV 88
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
G L+Q++C+ + + W + + ES++ +I E E+ D + DSG
Sbjct: 18 GDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRITGEE--------VEVQDSVPADSGL 68
Query: 282 YRC 284
Y C
Sbjct: 69 YAC 71
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI-- 371
F P + + G+ V+ C V + P I+W H+G++ V LK D I
Sbjct: 4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD----------VILKKDVRFIVL 53
Query: 372 ---RLEVKDPRKEDTGLYKCNIKNF-HGELN 398
L+++ +K D G Y+C + GE+N
Sbjct: 54 SNNYLQIRGIKKTDEGTYRCEGRILARGEIN 84
>pdb|1SQ2|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor (nar) Variable Domain In Complex With Lyxozyme
pdb|1T6V|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor (nar) Variable Domain In Complex With Lysozyme
pdb|1T6V|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor (nar) Variable Domain In Complex With Lysozyme
Length = 113
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 103 KAPRFPKKPTIHQDGDLLVMECVLE--ASPMPDIIWYQ------GTKVIEDTGRIKMSKK 154
+ PR K T G+ L + CVL + + WY+ + I GR +
Sbjct: 5 QTPRSVTKET----GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN 60
Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRC 180
S G ++ LR IN+ T +DGG YRC
Sbjct: 61 S-GSKSFSLR--INDLTVEDGGTYRC 83
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 126 LEASPMPDIIWYQGTKVIEDTGRI--KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183
++ P P + W V+ +T I + + + + L +N PT + GNY A
Sbjct: 24 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
Query: 184 NSIGESNANIALNF 197
N G+++A+I F
Sbjct: 84 NPFGQASASIMAAF 97
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 126 LEASPMPDIIWYQGTKVIEDTGRI--KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183
++ P P + W V+ +T I + + + + L +N PT + GNY A
Sbjct: 28 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 87
Query: 184 NSIGESNANIALNF 197
N G+++A+I F
Sbjct: 88 NPFGQASASIMAAF 101
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL-------QQTDRIS---WNVT 363
+ P+ + G+ V++C P + WF + GK L Q D+ S ++ T
Sbjct: 7 QSPQSLVVRQGENCVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRYSAT 66
Query: 364 LKGDKYHIRLEVKDPRKEDTGLYKC 388
L D H L + +DT Y C
Sbjct: 67 LDKDAKHSTLHITATLLDDTATYIC 91
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 103 KAPRFPKKPTIHQDGDLLVMECVLE--ASPMPDIIWYQGTKVIEDTGRIKMSKK---SIG 157
+ PR K T G+ L + C L+ A + WY+ T + +I + + ++
Sbjct: 5 QTPRSVTKET----GESLTINCALKNAADDLERTDWYRTTLGSTNEQKISIGGRYVETVN 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
K + L I + +D G Y+C A S SN + + GE GAG
Sbjct: 61 KGSKSFSLRIRDLRVEDSGTYKCGAYFSDAMSNYSYPIP---GEKGAG 105
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 27/199 (13%)
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG-------- 276
+++ C S P V+W K D+ +++++ N+ +YE P G
Sbjct: 22 VKLSCAYSGFSSPRVEW-KFDQ--GDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTR 77
Query: 277 PDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKI---RSEQGGKLVVMEC 333
D+GTY C V E G P KP + S G V+ C
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPS--------KPTVNIPSSATIGNRAVLTC 129
Query: 334 KVK-AKPMPEIVWFHEGKELQ---QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
+ P E WF +G + ++ R N + + L DTG Y C
Sbjct: 130 SEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189
Query: 390 IKNFHGELNANLTLNIEMV 408
+N +G + + +E V
Sbjct: 190 ARNGYGTPMTSNAVRMEAV 208
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G L+ + C+++ + I W +G +L +++R + G++ +EV+D D+GL
Sbjct: 24 GDLLQLRCRLR-DDVQSINWLRDGVQLVESNR----TRITGEE----VEVRDSIPADSGL 74
Query: 386 YKCNIKNFHGELNANLTLNI 405
Y C + G ++N+
Sbjct: 75 YACVTSSPSGSDTTYFSVNV 94
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
G L+Q++C+ + + W + + ES++ +I E E+ D I DSG
Sbjct: 24 GDLLQLRCRLRDDVQ-SINWLRDGVQLVESNRTRITGEE--------VEVRDSIPADSGL 74
Query: 282 YRC 284
Y C
Sbjct: 75 YAC 77
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQQTDRISWNV----------T 363
+ P S Q G V++C W+ + GK Q I NV T
Sbjct: 5 QHPSTLSVQEGDSAVIKCTYSDSASNYFPWYKQELGKRPQLIIDIRSNVGEKKDQRIAVT 64
Query: 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
L H L + + + ED+ +Y C +F E
Sbjct: 65 LNKTAKHFSLHITETQPEDSAVYFCAASSFGNE 97
>pdb|1YU6|C Chain C, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|D Chain D, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 185
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 74 IAKNKNGEGSSTVNL------NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLE 127
I+K +GE V + N + E+GK+ + KA P DG ECVL
Sbjct: 53 ISKEHDGECREAVPMDCSRYPNTTSEEGKVMILCNKA----LNPVCGTDGVTYDNECVLC 108
Query: 128 ASPMPDIIWYQGTKV---IEDTGRIKMSKKSIGKDTY---LLRLEINNPTKDDGGNY--R 179
A + QGT V + R +++ S+ Y LE D Y +
Sbjct: 109 AHNLE-----QGTSVGKKHDGECRKELAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNK 163
Query: 180 CNACNSIGESNANIALNFQG 199
CN CN++ ESN + L+ G
Sbjct: 164 CNFCNAVVESNGTLTLSHFG 183
>pdb|2YZ1|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
pdb|2YZ1|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of Murine
Shps-1SIRP ALPHA
Length = 120
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 108 PKKPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTK-----VIEDTG----RIKMSKKSIG 157
P+K GD V+ C L + P+ I WY+G + TG R+ +
Sbjct: 13 PEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATK 72
Query: 158 KDTYLLRLEINNPTKDDGGNYRC 180
++ + I+N T +D G Y C
Sbjct: 73 RNNMDFSIRISNVTPEDAGTYYC 95
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 21/141 (14%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--- 114
+T +V + D+GEY + + G+ V+++ + + VP P KPTI
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT-----VLVP-------PSKPTISVPS 114
Query: 115 --QDGDLLVMECV-LEASPMPDIIWYQG--TKVIEDTGRIK-MSKKSIGKDTYLLRLEIN 168
G+ V+ C + SP + W++ + + D + + S D L +
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 174
Query: 169 NPTKDDGGNYRCNACNSIGES 189
T D G Y C A N G +
Sbjct: 175 PVTAFDSGEYYCQAQNGYGTA 195
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF-HEGKELQQTDRISWNVTLKGDKYH 370
P ++ P+ + G++ ++C+ PM + W G L R H
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASR------------H 53
Query: 371 IRLEVKDPRK--------EDTGLYKCNIKNFHGELNANLTLNI 405
R+ V + DTG+Y C + N G NA+ LN+
Sbjct: 54 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 316 EKPKIRSEQGGKLVVMECKVK--AKPMPEIVWFHE--GKELQQTDRIS--WNVTLKGDKY 369
+ P+I +++ G+ + + C ++ A + W+ G +QT I ++ T+
Sbjct: 5 QTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSN 64
Query: 370 HIRLEVKDPRKEDTGLYKC 388
L ++D R ED+G YKC
Sbjct: 65 SASLTIRDLRVEDSGTYKC 83
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 343 IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCNIKN 392
I W + LQ T+R+ TL + +R+ DP ++ED G Y+C I N
Sbjct: 141 IQWLFNSQSLQLTERM----TLSQNNSILRI---DPIKREDAGEYQCEISN 184
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 21/121 (17%)
Query: 103 KAPRFPKKPTIHQDGDLLVMECVLEASP--MPDIIWYQGTKVIEDTGRIKMSKK---SIG 157
+ PR K T G+ L + CVL + + D WY+ + I + + ++
Sbjct: 5 QTPRTATKET----GESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNA-----CNSIGESNANIALNFQ------GGENGAGF 206
K + L I++ +D G Y+C A +G SN + GGE GAG
Sbjct: 61 KGSKSFSLRISDLRVEDSGTYKCQAFYVFFAEDVG-SNKGAIIGLMVGGVVIGGEKGAGT 119
Query: 207 A 207
A
Sbjct: 120 A 120
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 316 EKPKIRSEQG--GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
E+P R Q G + C+V A+ E+ W+ +GK+L + + V ++ RL
Sbjct: 14 EQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSK----VRVEAVGCTRRL 68
Query: 374 EVKDPRKEDTGLYKC 388
V+ + + G Y C
Sbjct: 69 VVQQAGQAEAGEYSC 83
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 212 EKP--RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI 256
E+P R + E+G + C+ A+ + EV W+K K + SSK+++
Sbjct: 14 EQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRV 59
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 343 IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCNIKN 392
I W + LQ T+R+ TL + +R+ DP ++ED G Y+C I N
Sbjct: 141 IQWLFNSQSLQLTERM----TLSQNNSILRI---DPIKREDAGEYQCEISN 184
>pdb|1T66|H Chain H, The Structure Of Fab With Intermediate Affinity For
Fluorescein.
pdb|1T66|D Chain D, The Structure Of Fab With Intermediate Affinity For
Fluorescein
Length = 220
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 351 ELQQTDRISWNVTLKGD--KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
E +D + T+ D K + L++ + R ED G+Y C +HG TL
Sbjct: 59 ETYYSDSVKGRFTISRDDSKSSVYLQMNNLRAEDMGIYYCTSYGYHGAYWGQGTL 113
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 344 VWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKEDTGLYKCNIKNFHGELNAN 400
+W + Q ++ N +GD + R L + R +D+G++ C N G N
Sbjct: 222 MWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVT 281
Query: 401 LTLNI 405
TL +
Sbjct: 282 TTLKV 286
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
A +TIKNV+++ A ++G + + +P P+ + +
Sbjct: 145 AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIP---VVSVPETSHLLK 201
Query: 116 DGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR--LEINNPTK 172
GD + C + + S + +W + + ++K + G Y + L I++
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARV 261
Query: 173 DDGGNYRCNACNSIGESNANIAL 195
DD G + C A N+ G +N L
Sbjct: 262 DDSGVFMCYANNTFGSANVTTTL 284
>pdb|4HPY|H Chain H, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 225
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 324 QGGKLVVMECKVKAKPMPE--IVWFHE--GKELQQTDRISWNV-------TLKG------ 366
Q G+ + + C + + W + GK L+ ISWN ++KG
Sbjct: 13 QPGRSLRLSCAASGFTFDDGAMHWVRQAPGKGLEWVSGISWNSNIIAYADSVKGRFTISR 72
Query: 367 --DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
K + LE+ R EDT LY C + GEL N
Sbjct: 73 DNAKNSLYLEMNSLRVEDTALYYCAKDSPRGELPLN 108
>pdb|1JRH|H Chain H, Complex (AntibodyANTIGEN)
Length = 219
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Query: 241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF---GXXXXXX 297
W+ DK S K ++ +++ ++ +IT D+ TY C + F
Sbjct: 54 WWDDDKYYNPSLKSRLTISKDTSRNQVFLKITSVATADTATYYCARRAPFYGNHAMDYWG 113
Query: 298 XXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGK 350
+ PP+ + Q +V + C VK P P V ++ G
Sbjct: 114 QGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 167
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 116 DGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI---NNPT 171
+G+ ++ C E+ P+ D WY+ T ED + S+ + R E+ N
Sbjct: 97 EGETAMLVCKSESVPPVTDWAWYKITDS-EDKALMNGSESRFFVSSSQGRSELHIENLNM 155
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQ 198
+ D G YRCN +S G A I L +
Sbjct: 156 EADPGQYRCNGTSSKGSDQAIITLRVR 182
>pdb|2EDN|A Chain A, Solution Structure Of The First Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPE---IVWFHEGKELQQTDRISWNVTLK----- 365
F++KP S + GK V+ KV K +P+ I WF +GK L+ + + K
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWF-KGKWLELGSKSGARFSFKESHNS 73
Query: 366 -GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
+ Y + L + D G Y+ +K + +++E R
Sbjct: 74 ASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
P +E P + G ++C+ M + W L +++ D
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRT-GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG--- 368
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L + +DTG Y C + N G A+ TLN+
Sbjct: 369 TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
Length = 121
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 108 PKKPTIHQDGDLLVMECVLEASP--MPDIIWYQ------GTKVIEDTGRIKMSKKSIGKD 159
P++ T + G+ L + CV+ S + WY+ + I D GR +++ +
Sbjct: 7 PQRIT-KETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYV---ETVNRG 62
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNA-NIALNFQGG 200
+ L IN+ T D G YRC + G +A ALN Q G
Sbjct: 63 SKSFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYG 104
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT--LKGDKYHIR--LEVKDPR 379
QG + +M C V + W + KE + R+ VT L YHIR L +
Sbjct: 195 QGENITLM-CIVIGNEVVNFEWTYPRKE---SGRLVEPVTDFLLDMPYHIRSILHIPSAE 250
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMV 408
ED+G Y CN+ + +NI +V
Sbjct: 251 LEDSGTYTCNVTESVNDHQDEKAINITVV 279
>pdb|2VQ1|B Chain B, Anti Trimeric Lewis X Fab54-5c10-A
pdb|2VQ1|F Chain F, Anti Trimeric Lewis X Fab54-5c10-A
Length = 218
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 2/111 (1%)
Query: 241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXX 300
W+ DK + K ++ V++ ++ +I + D+ TY C FG
Sbjct: 54 WWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTT 113
Query: 301 XXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGK 350
P + P S+ G V + C VK P P V ++ G
Sbjct: 114 LTVSSATTTAPSVYPLVPGC-SDTSGSSVTLGCLVKGYFPEPVTVKWNYGA 163
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 361 NVTLKGDKYHIRLE-------VKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
NV GDKY +R E V++ R +D+G Y C+ G+ + TL +
Sbjct: 46 NVLRPGDKYSLRQEGAXLELVVRNLRPQDSGRYSCSF----GDQTTSATLTV 93
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 361 NVTLKGDKYHIRLE-------VKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
NV GDKY +R E V++ R +D+G Y C+ G+ + TL +
Sbjct: 46 NVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTV 93
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 345 WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404
W + K L +T+ V ++ K V+ KED G+Y +KN GE NLT+
Sbjct: 80 WVFDKKLLCETEG---RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Query: 405 I 405
+
Sbjct: 137 V 137
>pdb|2DAV|A Chain A, Solution Structure Of The First Ig-Like Domain Of Myosin-
Binding Protein C, Slow-Type
Length = 126
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLK----- 365
FIEKP+ + + G+ + KVKA+ + P I WF +GK + + ++ LK
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWF-KGKWMDLASKAGKHLQLKETFER 68
Query: 366 -GDKYHIRLEVKDPRKEDTGLYKCNI 390
Y +++ + G Y+C +
Sbjct: 69 HSRVYTFEMQIIKAKDNFAGNYRCEV 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,321,565
Number of Sequences: 62578
Number of extensions: 699342
Number of successful extensions: 3025
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 2163
Number of HSP's gapped (non-prelim): 572
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)