Query psy670
Match_columns 540
No_of_seqs 298 out of 3040
Neff 11.1
Searched_HMMs 46136
Date Sat Aug 17 00:47:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 5.2E-50 1.1E-54 400.0 44.2 434 6-537 60-615 (1051)
2 KOG3513|consensus 100.0 1E-43 2.2E-48 355.0 40.9 349 7-409 260-615 (1051)
3 KOG4222|consensus 100.0 5.9E-39 1.3E-43 317.2 23.8 429 6-527 49-503 (1281)
4 KOG4221|consensus 100.0 4.4E-35 9.5E-40 291.6 32.4 352 5-407 56-417 (1381)
5 KOG4221|consensus 100.0 5.5E-33 1.2E-37 276.8 27.3 334 112-520 49-403 (1381)
6 KOG4222|consensus 100.0 4E-32 8.7E-37 269.2 18.4 352 6-407 149-510 (1281)
7 KOG4194|consensus 100.0 5.8E-29 1.3E-33 231.5 23.9 271 113-407 514-797 (873)
8 KOG4194|consensus 100.0 2.1E-29 4.7E-34 234.3 19.5 261 207-524 503-787 (873)
9 PHA02785 IL-beta-binding prote 100.0 3.7E-27 8E-32 220.4 27.9 256 112-396 36-317 (326)
10 PHA02785 IL-beta-binding prote 100.0 3.9E-26 8.4E-31 213.6 28.1 237 24-293 61-318 (326)
11 KOG3515|consensus 99.8 5.9E-20 1.3E-24 180.6 17.8 430 8-521 27-481 (741)
12 PHA02826 IL-1 receptor-like pr 99.8 2.4E-18 5.1E-23 150.7 18.2 162 110-292 30-213 (227)
13 PHA02826 IL-1 receptor-like pr 99.8 4.3E-18 9.3E-23 149.0 18.3 161 215-395 30-212 (227)
14 KOG3515|consensus 99.8 4.4E-18 9.4E-23 167.6 18.6 400 23-496 128-539 (741)
15 cd05762 Ig8_MLCK Eighth immuno 99.6 4.8E-15 1E-19 112.3 12.9 92 312-407 1-92 (98)
16 cd05851 Ig3_Contactin-1 Third 99.6 1.7E-14 3.8E-19 107.1 10.6 88 311-406 1-88 (88)
17 cd04975 Ig4_SCFR_like Fourth i 99.6 4E-14 8.6E-19 107.3 12.5 88 319-406 11-100 (101)
18 cd05762 Ig8_MLCK Eighth immuno 99.6 8E-14 1.7E-18 105.6 12.5 95 208-306 1-95 (98)
19 cd05892 Ig_Myotilin_C C-termin 99.6 2.2E-14 4.9E-19 102.2 8.5 73 7-90 2-75 (75)
20 cd04975 Ig4_SCFR_like Fourth i 99.5 8.9E-14 1.9E-18 105.4 11.9 88 111-198 12-100 (101)
21 cd05737 Ig_Myomesin_like_C C-t 99.5 1E-13 2.2E-18 104.4 12.1 85 318-405 8-92 (92)
22 cd05747 Ig5_Titin_like M5, fif 99.5 1.2E-13 2.7E-18 103.9 12.1 89 311-403 3-91 (92)
23 cd05735 Ig8_DSCAM Eight immuno 99.5 2.3E-13 5E-18 101.0 12.7 82 326-407 1-83 (88)
24 cd05892 Ig_Myotilin_C C-termin 99.5 1.1E-13 2.4E-18 98.5 10.4 74 329-405 1-75 (75)
25 PF07679 I-set: Immunoglobulin 99.5 2.2E-13 4.7E-18 102.7 12.4 90 312-405 1-90 (90)
26 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.5E-13 5.4E-18 100.2 12.0 82 320-405 4-86 (86)
27 cd05855 Ig_TrkB_d5 Fifth domai 99.5 8.5E-14 1.8E-18 99.4 8.5 75 8-89 3-77 (79)
28 cd05859 Ig4_PDGFR-alpha Fourth 99.5 2.8E-13 6.2E-18 102.8 11.3 87 320-406 12-100 (101)
29 cd05735 Ig8_DSCAM Eight immuno 99.5 6E-13 1.3E-17 98.7 12.7 83 117-200 1-84 (88)
30 cd05852 Ig5_Contactin-1 Fifth 99.5 1.8E-13 3.9E-18 97.2 9.3 73 117-197 1-73 (73)
31 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3.9E-13 8.5E-18 100.7 11.4 85 317-405 6-90 (90)
32 cd05863 Ig2_VEGFR-3 Second imm 99.5 2E-13 4.3E-18 94.3 8.9 66 329-406 1-66 (67)
33 cd05893 Ig_Palladin_C C-termin 99.5 1.4E-13 3E-18 98.3 8.3 73 7-90 2-75 (75)
34 cd05745 Ig3_Peroxidasin Third 99.5 1.8E-13 4E-18 98.2 8.9 74 116-197 1-74 (74)
35 cd05867 Ig4_L1-CAM_like Fourth 99.5 6.2E-13 1.4E-17 96.0 11.6 74 326-405 1-75 (76)
36 cd05855 Ig_TrkB_d5 Fifth domai 99.5 4.6E-13 1E-17 95.6 10.7 76 122-197 3-78 (79)
37 cd05893 Ig_Palladin_C C-termin 99.5 4.7E-13 1E-17 95.6 10.7 75 329-405 1-75 (75)
38 cd05851 Ig3_Contactin-1 Third 99.5 2.6E-13 5.6E-18 100.8 9.6 87 207-301 1-87 (88)
39 cd05730 Ig3_NCAM-1_like Third 99.5 8.5E-13 1.8E-17 100.2 12.6 83 320-407 12-94 (95)
40 cd05748 Ig_Titin_like Immunogl 99.5 2.3E-13 5E-18 97.9 8.7 71 8-90 4-74 (74)
41 cd05868 Ig4_NrCAM Fourth immun 99.5 5.5E-13 1.2E-17 96.0 10.7 75 326-405 1-75 (76)
42 cd05744 Ig_Myotilin_C_like Imm 99.5 2.7E-13 5.9E-18 97.2 9.0 73 7-90 2-75 (75)
43 cd05745 Ig3_Peroxidasin Third 99.5 2.9E-13 6.4E-18 97.1 9.1 74 325-405 1-74 (74)
44 cd04968 Ig3_Contactin_like Thi 99.5 9.9E-13 2.1E-17 98.2 12.3 86 312-405 2-87 (88)
45 cd05869 Ig5_NCAM-1 Fifth immun 99.5 9E-13 2E-17 100.2 12.2 93 311-405 2-97 (97)
46 cd05771 IgC_Tapasin_R Tapasin- 99.5 7.8E-13 1.7E-17 108.2 12.7 118 372-535 2-126 (139)
47 cd05728 Ig4_Contactin-2-like F 99.5 4.5E-13 9.8E-18 99.0 10.2 82 316-405 4-85 (85)
48 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 8.1E-13 1.8E-17 97.5 11.5 82 111-197 4-86 (86)
49 cd05852 Ig5_Contactin-1 Fifth 99.5 4.8E-13 1E-17 95.0 9.8 73 326-405 1-73 (73)
50 cd05891 Ig_M-protein_C C-termi 99.5 1.1E-12 2.3E-17 98.4 11.9 85 318-405 8-92 (92)
51 cd05737 Ig_Myomesin_like_C C-t 99.5 7.1E-13 1.5E-17 99.7 11.0 83 111-197 10-92 (92)
52 cd05865 Ig1_NCAM-1 First immun 99.5 1.1E-12 2.4E-17 98.5 11.8 86 318-405 7-95 (96)
53 cd05859 Ig4_PDGFR-alpha Fourth 99.5 6.4E-13 1.4E-17 100.9 10.6 88 111-198 12-100 (101)
54 cd07693 Ig1_Robo First immunog 99.5 1.5E-12 3.3E-17 100.4 13.0 95 311-405 1-99 (100)
55 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.9E-13 4.2E-18 94.4 6.9 63 8-90 3-65 (67)
56 cd05748 Ig_Titin_like Immunogl 99.5 8E-13 1.7E-17 95.0 10.4 73 329-405 2-74 (74)
57 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 6.4E-13 1.4E-17 96.4 9.0 76 8-89 3-79 (81)
58 cd05744 Ig_Myotilin_C_like Imm 99.4 1.4E-12 3E-17 93.6 10.5 74 329-405 1-75 (75)
59 cd05857 Ig2_FGFR Second immuno 99.4 2.2E-12 4.8E-17 95.8 11.8 81 321-405 4-85 (85)
60 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.9E-12 4.1E-17 93.8 10.7 75 326-405 1-75 (76)
61 cd05747 Ig5_Titin_like M5, fif 99.4 2.6E-12 5.6E-17 96.7 11.7 89 207-299 3-91 (92)
62 cd05771 IgC_Tapasin_R Tapasin- 99.4 2.8E-12 6E-17 104.9 12.8 121 57-186 2-131 (139)
63 cd05723 Ig4_Neogenin Fourth im 99.4 2E-12 4.4E-17 91.8 10.5 71 328-405 1-71 (71)
64 cd05732 Ig5_NCAM-1_like Fifth 99.4 2.7E-12 5.9E-17 97.8 11.9 92 311-405 2-96 (96)
65 cd05723 Ig4_Neogenin Fourth im 99.4 2E-12 4.4E-17 91.8 10.4 71 119-197 1-71 (71)
66 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 2.7E-12 5.8E-17 93.1 11.1 75 330-404 2-79 (81)
67 cd05728 Ig4_Contactin-2-like F 99.4 1.7E-12 3.7E-17 95.9 10.3 78 111-197 8-85 (85)
68 cd05870 Ig5_NCAM-2 Fifth immun 99.4 3.3E-12 7E-17 97.4 12.0 92 311-405 2-98 (98)
69 cd05773 Ig8_hNephrin_like Eigh 99.4 3.9E-12 8.5E-17 98.5 12.6 83 325-407 22-106 (109)
70 cd04969 Ig5_Contactin_like Fif 99.4 1.8E-12 3.8E-17 92.9 9.6 73 117-197 1-73 (73)
71 cd05854 Ig6_Contactin-2 Sixth 99.4 1.6E-12 3.5E-17 95.6 9.6 78 7-93 4-84 (85)
72 cd05867 Ig4_L1-CAM_like Fourth 99.4 3.8E-12 8.3E-17 91.9 11.3 74 117-197 1-75 (76)
73 cd05848 Ig1_Contactin-5 First 99.4 5.2E-12 1.1E-16 95.0 12.4 81 312-398 2-86 (94)
74 PF07679 I-set: Immunoglobulin 99.4 2.6E-12 5.6E-17 96.8 10.5 90 208-301 1-90 (90)
75 cd05854 Ig6_Contactin-2 Sixth 99.4 4.4E-12 9.5E-17 93.3 11.4 78 327-407 1-83 (85)
76 cd05868 Ig4_NrCAM Fourth immun 99.4 3.6E-12 7.8E-17 91.7 10.6 76 117-198 1-76 (76)
77 cd05743 Ig_Perlecan_D2_like Im 99.4 2.7E-12 5.8E-17 93.1 9.9 76 326-405 1-76 (78)
78 cd05865 Ig1_NCAM-1 First immun 99.4 3.6E-12 7.8E-17 95.8 10.8 82 112-197 10-95 (96)
79 cd04976 Ig2_VEGFR Second immun 99.4 1.9E-12 4.1E-17 91.7 8.7 70 329-406 1-70 (71)
80 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.6E-12 3.5E-17 91.1 8.1 69 329-406 1-69 (70)
81 cd04976 Ig2_VEGFR Second immun 99.4 2E-12 4.4E-17 91.6 8.7 70 120-198 1-70 (71)
82 cd05866 Ig1_NCAM-2 First immun 99.4 5.7E-12 1.2E-16 93.7 11.5 83 318-405 7-91 (92)
83 cd05850 Ig1_Contactin-2 First 99.4 1.1E-11 2.3E-16 93.4 13.2 86 312-403 2-92 (94)
84 cd04972 Ig_TrkABC_d4 Fourth do 99.4 6.2E-12 1.3E-16 94.2 11.8 82 111-197 9-90 (90)
85 cd05891 Ig_M-protein_C C-termi 99.4 5.5E-12 1.2E-16 94.5 11.5 83 111-197 10-92 (92)
86 cd04969 Ig5_Contactin_like Fif 99.4 3.6E-12 7.9E-17 91.2 10.0 73 326-405 1-73 (73)
87 cd05758 Ig5_KIRREL3-like Fifth 99.4 1E-11 2.2E-16 94.6 13.0 92 311-403 2-97 (98)
88 cd05869 Ig5_NCAM-1 Fifth immun 99.4 3.2E-12 7E-17 97.2 10.1 86 112-197 12-97 (97)
89 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 1.4E-12 3.1E-17 93.4 7.6 71 7-90 2-73 (74)
90 cd05736 Ig2_Follistatin_like S 99.4 2.4E-12 5.3E-17 93.1 8.6 73 7-91 2-74 (76)
91 cd05732 Ig5_NCAM-1_like Fifth 99.4 5.6E-12 1.2E-16 96.1 11.1 87 111-197 10-96 (96)
92 cd05857 Ig2_FGFR Second immuno 99.4 7.9E-12 1.7E-16 92.8 11.3 81 113-197 5-85 (85)
93 cd05730 Ig3_NCAM-1_like Third 99.4 9.6E-12 2.1E-16 94.4 11.6 81 112-199 13-94 (95)
94 cd05864 Ig2_VEGFR-2 Second imm 99.4 3E-12 6.4E-17 89.7 8.1 68 120-197 1-68 (70)
95 cd05876 Ig3_L1-CAM Third immun 99.4 4.3E-12 9.4E-17 90.1 9.1 71 329-406 1-71 (71)
96 cd05746 Ig4_Peroxidasin Fourth 99.4 1.2E-12 2.7E-17 92.4 6.2 66 8-88 3-68 (69)
97 cd05760 Ig2_PTK7 Second immuno 99.4 7E-12 1.5E-16 90.6 10.3 73 329-406 1-75 (77)
98 cd04973 Ig1_FGFR First immunog 99.4 5.3E-12 1.1E-16 91.7 9.3 77 111-197 3-79 (79)
99 cd05760 Ig2_PTK7 Second immuno 99.4 3.6E-12 7.9E-17 92.1 8.4 70 7-90 2-72 (77)
100 cd04973 Ig1_FGFR First immunog 99.4 5.9E-12 1.3E-16 91.5 9.4 78 319-405 2-79 (79)
101 cd05740 Ig_CEACAM_D4 Fourth im 99.4 1.4E-11 2.9E-16 91.9 11.4 80 318-405 10-90 (91)
102 cd04978 Ig4_L1-NrCAM_like Four 99.4 1E-11 2.2E-16 90.0 10.5 75 117-197 1-75 (76)
103 cd05722 Ig1_Neogenin First imm 99.4 1E-11 2.2E-16 94.2 10.8 86 315-405 3-95 (95)
104 cd05746 Ig4_Peroxidasin Fourth 99.3 4.5E-12 9.8E-17 89.5 8.1 68 120-195 1-68 (69)
105 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 1.2E-11 2.5E-16 86.9 9.8 68 326-403 1-68 (69)
106 cd05853 Ig6_Contactin-4 Sixth 99.3 7.6E-12 1.6E-16 90.8 9.0 80 327-407 1-83 (85)
107 cd04968 Ig3_Contactin_like Thi 99.3 1.2E-11 2.6E-16 92.3 10.4 85 209-301 3-87 (88)
108 cd05763 Ig_1 Subgroup of the i 99.3 8.4E-12 1.8E-16 89.9 9.2 73 329-405 1-74 (75)
109 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 1.2E-11 2.6E-16 86.8 9.7 68 117-195 1-68 (69)
110 cd05736 Ig2_Follistatin_like S 99.3 1.4E-11 3E-16 89.1 10.3 75 329-407 1-75 (76)
111 cd05876 Ig3_L1-CAM Third immun 99.3 7.8E-12 1.7E-16 88.8 8.6 70 120-197 1-70 (71)
112 cd07693 Ig1_Robo First immunog 99.3 2.8E-11 6.1E-16 93.2 12.5 95 207-301 1-99 (100)
113 cd05870 Ig5_NCAM-2 Fifth immun 99.3 7.2E-12 1.6E-16 95.5 8.9 83 110-197 9-98 (98)
114 cd05853 Ig6_Contactin-4 Sixth 99.3 4.3E-12 9.4E-17 92.0 7.2 79 7-94 4-85 (85)
115 cd05763 Ig_1 Subgroup of the i 99.3 5E-12 1.1E-16 91.1 7.6 72 7-90 2-74 (75)
116 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1E-11 2.2E-16 89.0 9.1 72 329-405 1-73 (74)
117 cd05856 Ig2_FGFRL1-like Second 99.3 9.6E-12 2.1E-16 91.8 9.3 78 322-405 5-82 (82)
118 cd05743 Ig_Perlecan_D2_like Im 99.3 5.8E-12 1.3E-16 91.4 7.7 70 8-89 6-75 (78)
119 cd05849 Ig1_Contactin-1 First 99.3 3.2E-11 7E-16 90.3 11.9 85 312-403 2-91 (93)
120 cd04970 Ig6_Contactin_like Six 99.3 1.5E-11 3.3E-16 91.0 10.1 78 327-407 1-83 (85)
121 cd05858 Ig3_FGFR-2 Third immun 99.3 1.7E-11 3.7E-16 91.7 10.4 80 326-405 1-89 (90)
122 cd05866 Ig1_NCAM-2 First immun 99.3 2.1E-11 4.6E-16 90.6 10.4 81 111-197 9-91 (92)
123 cd05773 Ig8_hNephrin_like Eigh 99.3 5E-11 1.1E-15 92.3 12.8 98 206-303 3-106 (109)
124 cd04977 Ig1_NCAM-1_like First 99.3 3.5E-11 7.6E-16 90.2 11.2 84 318-405 7-92 (92)
125 cd04970 Ig6_Contactin_like Six 99.3 1E-11 2.2E-16 91.9 8.1 79 6-93 3-84 (85)
126 cd05764 Ig_2 Subgroup of the i 99.3 2.4E-11 5.3E-16 87.3 9.7 73 117-197 1-74 (74)
127 cd04974 Ig3_FGFR Third immunog 99.3 2.1E-11 4.6E-16 91.1 9.7 80 326-405 1-89 (90)
128 cd05856 Ig2_FGFRL1-like Second 99.3 2E-11 4.3E-16 90.1 9.5 78 113-197 5-82 (82)
129 cd05725 Ig3_Robo Third immunog 99.3 8.9E-12 1.9E-16 88.1 7.2 68 7-90 2-69 (69)
130 cd05731 Ig3_L1-CAM_like Third 99.3 1.9E-11 4.2E-16 87.2 9.0 70 329-405 1-70 (71)
131 cd07702 Ig2_VEGFR-1 Second imm 99.3 2.6E-11 5.7E-16 85.0 9.4 70 329-405 1-70 (72)
132 cd05764 Ig_2 Subgroup of the i 99.3 2.4E-11 5.2E-16 87.4 9.5 73 326-405 1-74 (74)
133 cd05725 Ig3_Robo Third immunog 99.3 1.8E-11 3.9E-16 86.6 8.5 69 329-405 1-69 (69)
134 cd05726 Ig4_Robo Fhird immunog 99.3 2.4E-11 5.2E-16 91.0 9.7 77 326-407 1-83 (90)
135 cd05749 Ig2_Tyro3_like Second 99.3 2.8E-11 6.1E-16 87.5 9.1 75 317-403 4-80 (81)
136 cd05750 Ig_Pro_neuregulin Immu 99.3 1.4E-11 3.1E-16 89.0 7.2 71 7-87 2-74 (75)
137 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.1E-10 2.3E-15 89.0 12.3 92 207-299 2-97 (98)
138 cd05726 Ig4_Robo Fhird immunog 99.3 2.9E-11 6.2E-16 90.6 9.0 75 117-199 1-83 (90)
139 cd05756 Ig1_IL1R_like First im 99.3 2.5E-11 5.5E-16 90.9 8.6 82 320-405 8-94 (94)
140 cd05858 Ig3_FGFR-2 Third immun 99.3 4.8E-11 1E-15 89.3 10.1 81 117-197 1-89 (90)
141 cd05740 Ig_CEACAM_D4 Fourth im 99.3 5.8E-11 1.3E-15 88.5 10.3 78 111-197 12-90 (91)
142 cd07702 Ig2_VEGFR-1 Second imm 99.3 3E-11 6.5E-16 84.7 8.2 68 120-195 1-68 (72)
143 cd05724 Ig2_Robo Second immuno 99.3 5.3E-11 1.2E-15 88.6 10.1 81 318-404 3-85 (86)
144 cd05848 Ig1_Contactin-5 First 99.3 1E-10 2.2E-15 88.0 11.6 81 208-294 2-86 (94)
145 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 1.5E-10 3.2E-15 85.0 12.1 81 326-406 1-83 (84)
146 cd05731 Ig3_L1-CAM_like Third 99.3 3.4E-11 7.3E-16 85.9 8.5 70 120-197 1-70 (71)
147 cd05898 Ig5_KIRREL3 Fifth immu 99.3 2E-10 4.3E-15 85.7 12.7 92 311-403 2-97 (98)
148 cd05752 Ig1_FcgammaR_like Frst 99.3 2.7E-11 5.8E-16 87.0 7.7 66 313-393 2-68 (78)
149 cd05742 Ig1_VEGFR_like First i 99.2 8.1E-11 1.7E-15 86.9 10.0 81 117-197 1-83 (84)
150 cd05750 Ig_Pro_neuregulin Immu 99.2 6.5E-11 1.4E-15 85.5 9.0 72 329-402 1-74 (75)
151 cd05742 Ig1_VEGFR_like First i 99.2 9.3E-11 2E-15 86.5 9.9 80 326-405 1-83 (84)
152 cd04974 Ig3_FGFR Third immunog 99.2 8.9E-11 1.9E-15 87.7 9.5 81 117-197 1-89 (90)
153 cd05733 Ig6_L1-CAM_like Sixth 99.2 3.2E-11 6.9E-16 87.1 6.7 66 7-84 2-71 (77)
154 cd05733 Ig6_L1-CAM_like Sixth 99.2 6.9E-11 1.5E-15 85.3 8.5 66 329-398 1-70 (77)
155 cd05756 Ig1_IL1R_like First im 99.2 3.8E-11 8.2E-16 89.9 7.3 80 111-197 8-94 (94)
156 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.2E-10 2.5E-15 83.9 9.5 67 329-399 1-71 (77)
157 cd05850 Ig1_Contactin-2 First 99.2 3.2E-10 6.8E-15 85.4 12.2 82 208-295 2-87 (94)
158 cd04977 Ig1_NCAM-1_like First 99.2 1.5E-10 3.2E-15 86.8 10.3 81 111-196 9-91 (92)
159 cd05724 Ig2_Robo Second immuno 99.2 1.2E-10 2.5E-15 86.8 9.6 78 111-196 5-85 (86)
160 cd05765 Ig_3 Subgroup of the i 99.2 9.1E-11 2E-15 86.2 8.8 77 326-405 1-81 (81)
161 cd05875 Ig6_hNeurofascin_like 99.2 5.6E-11 1.2E-15 85.5 7.4 66 7-84 2-71 (77)
162 cd04967 Ig1_Contactin First Ig 99.2 2.8E-10 6.1E-15 85.4 11.5 81 312-398 2-86 (91)
163 cd05874 Ig6_NrCAM Sixth immuno 99.2 6.7E-11 1.5E-15 85.1 7.6 66 7-84 2-71 (77)
164 cd05875 Ig6_hNeurofascin_like 99.2 1.8E-10 4E-15 82.9 9.6 67 329-399 1-71 (77)
165 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 6.4E-10 1.4E-14 81.6 12.2 81 117-198 1-83 (84)
166 cd05895 Ig_Pro_neuregulin-1 Im 99.2 1.9E-10 4.1E-15 83.1 8.7 72 329-402 1-75 (76)
167 cd05849 Ig1_Contactin-1 First 99.2 6.2E-10 1.3E-14 83.3 11.2 80 208-294 2-85 (93)
168 cd05722 Ig1_Neogenin First imm 99.2 5.4E-10 1.2E-14 84.6 11.1 84 212-300 4-94 (95)
169 cd05749 Ig2_Tyro3_like Second 99.2 2.6E-10 5.7E-15 82.4 8.9 67 111-190 7-74 (81)
170 cd05895 Ig_Pro_neuregulin-1 Im 99.1 1.6E-10 3.4E-15 83.5 7.3 71 7-87 2-75 (76)
171 cd05860 Ig4_SCFR Fourth immuno 99.1 9.7E-10 2.1E-14 81.1 11.3 88 111-198 12-100 (101)
172 cd05765 Ig_3 Subgroup of the i 99.1 3E-10 6.6E-15 83.4 8.7 77 117-197 1-81 (81)
173 cd05729 Ig2_FGFR_like Second i 99.1 9.6E-10 2.1E-14 81.7 11.2 82 321-405 4-85 (85)
174 cd05752 Ig1_FcgammaR_like Frst 99.1 3E-10 6.5E-15 81.6 8.0 66 209-289 2-68 (78)
175 cd05734 Ig7_DSCAM Seventh immu 99.1 3E-10 6.5E-15 82.7 8.1 72 329-405 1-79 (79)
176 cd05860 Ig4_SCFR Fourth immuno 99.1 2.4E-09 5.1E-14 79.1 12.1 88 319-406 11-100 (101)
177 cd05734 Ig7_DSCAM Seventh immu 99.1 3.8E-10 8.2E-15 82.1 6.9 68 7-89 2-78 (79)
178 cd05729 Ig2_FGFR_like Second i 99.1 1.7E-09 3.7E-14 80.3 10.6 81 113-197 5-85 (85)
179 cd05754 Ig3_Perlecan_like Thir 99.1 8.5E-10 1.8E-14 81.6 8.8 77 317-403 7-84 (85)
180 cd05873 Ig_Sema4D_like Immunog 99.1 1.3E-09 2.8E-14 79.4 9.2 66 111-186 5-71 (87)
181 cd05898 Ig5_KIRREL3 Fifth immu 99.0 3.9E-09 8.4E-14 78.8 11.4 92 207-299 2-97 (98)
182 cd04979 Ig_Semaphorin_C Immuno 99.0 1.9E-09 4.1E-14 80.6 9.8 82 318-406 3-87 (89)
183 cd05873 Ig_Sema4D_like Immunog 99.0 3.9E-09 8.5E-14 76.9 10.7 69 318-394 3-71 (87)
184 cd04967 Ig1_Contactin First Ig 99.0 3E-09 6.4E-14 79.8 10.5 80 209-294 3-86 (91)
185 cd05757 Ig2_IL1R_like Second i 99.0 1E-09 2.3E-14 81.5 7.7 77 111-196 4-85 (92)
186 cd05882 Ig1_Necl-1 First (N-te 99.0 4.6E-09 9.9E-14 78.6 11.0 82 319-404 5-94 (95)
187 cd07701 Ig1_Necl-3 First (N-te 99.0 3.2E-09 6.9E-14 79.9 10.2 84 318-405 4-95 (95)
188 cd05757 Ig2_IL1R_like Second i 99.0 2.8E-09 6E-14 79.3 9.2 78 321-406 5-87 (92)
189 cd04979 Ig_Semaphorin_C Immuno 99.0 1.7E-09 3.6E-14 80.8 8.1 80 111-198 5-87 (89)
190 cd05882 Ig1_Necl-1 First (N-te 99.0 5.7E-09 1.2E-13 78.1 10.7 71 110-184 5-83 (95)
191 cd07701 Ig1_Necl-3 First (N-te 99.0 3.6E-09 7.8E-14 79.6 9.6 82 110-196 5-94 (95)
192 cd05754 Ig3_Perlecan_like Thir 99.0 2.1E-09 4.6E-14 79.5 8.0 74 111-195 10-84 (85)
193 cd05753 Ig2_FcgammaR_like Seco 99.0 2.9E-09 6.3E-14 77.8 7.7 72 321-404 9-82 (83)
194 PF13895 Ig_2: Immunoglobulin 98.9 9.7E-09 2.1E-13 75.2 10.0 71 321-405 9-80 (80)
195 cd05862 Ig1_VEGFR First immuno 98.9 7.5E-09 1.6E-13 76.2 9.1 80 326-406 1-85 (86)
196 cd05862 Ig1_VEGFR First immuno 98.9 9.3E-09 2E-13 75.7 9.5 82 117-198 1-85 (86)
197 cd05753 Ig2_FcgammaR_like Seco 98.9 3.3E-09 7.2E-14 77.5 6.8 72 112-196 9-82 (83)
198 PHA03376 BARF1; Provisional 98.9 6.4E-08 1.4E-12 78.3 14.0 125 111-247 20-164 (221)
199 cd05727 Ig2_Contactin-2-like S 98.9 3.5E-09 7.5E-14 78.3 6.3 72 109-187 10-84 (96)
200 PF13895 Ig_2: Immunoglobulin 98.9 5.6E-09 1.2E-13 76.5 7.0 72 111-197 8-80 (80)
201 cd07690 Ig1_CD4 First immunogl 98.9 7.1E-09 1.5E-13 77.0 7.0 75 112-188 2-90 (94)
202 cd05885 Ig2_Necl-4 Second immu 98.9 1.7E-08 3.7E-13 71.8 8.4 66 120-188 2-68 (80)
203 smart00408 IGc2 Immunoglobulin 98.8 1.5E-08 3.2E-13 70.1 7.6 63 116-187 1-63 (63)
204 smart00410 IG_like Immunoglobu 98.8 1E-07 2.3E-12 70.6 12.5 82 320-405 3-85 (86)
205 smart00409 IG Immunoglobulin. 98.8 1E-07 2.3E-12 70.6 12.5 82 320-405 3-85 (86)
206 cd05885 Ig2_Necl-4 Second immu 98.8 1.9E-08 4.1E-13 71.6 7.8 65 8-82 4-69 (80)
207 PHA03376 BARF1; Provisional 98.8 1.8E-07 3.9E-12 75.8 14.1 128 216-350 20-163 (221)
208 smart00408 IGc2 Immunoglobulin 98.8 2.4E-08 5.2E-13 69.1 8.1 63 325-395 1-63 (63)
209 smart00409 IG Immunoglobulin. 98.8 1.1E-07 2.3E-12 70.5 11.9 81 112-197 4-85 (86)
210 smart00410 IG_like Immunoglobu 98.8 1.1E-07 2.3E-12 70.5 11.9 81 112-197 4-85 (86)
211 cd05871 Ig_Semaphorin_classIII 98.8 5.1E-08 1.1E-12 72.5 9.8 79 321-406 6-89 (91)
212 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 2.5E-08 5.5E-13 73.9 7.9 79 112-197 10-104 (104)
213 cd05871 Ig_Semaphorin_classIII 98.8 4.5E-08 9.7E-13 72.8 9.1 77 112-198 6-89 (91)
214 cd05759 Ig2_KIRREL3-like Secon 98.8 5.9E-08 1.3E-12 71.1 9.7 75 120-195 2-80 (82)
215 PF00047 ig: Immunoglobulin do 98.8 1.4E-08 3.1E-13 70.5 5.6 63 117-182 1-64 (64)
216 cd05717 Ig1_Necl-1-3_like Firs 98.8 7.5E-08 1.6E-12 72.9 9.8 81 111-196 6-94 (95)
217 TIGR00864 PCC polycystin catio 98.8 0.00013 2.8E-09 83.2 38.3 343 63-521 1664-2025(2740)
218 cd05717 Ig1_Necl-1-3_like Firs 98.8 1.2E-07 2.5E-12 71.8 10.4 83 319-405 5-95 (95)
219 cd07690 Ig1_CD4 First immunogl 98.7 7.1E-08 1.5E-12 71.7 8.9 75 322-397 3-91 (94)
220 cd05759 Ig2_KIRREL3-like Secon 98.7 6.8E-08 1.5E-12 70.8 8.7 69 7-82 3-72 (82)
221 PF00047 ig: Immunoglobulin do 98.7 2.4E-08 5.1E-13 69.4 5.9 63 326-390 1-64 (64)
222 cd05897 Ig2_IL1R2_like Second 98.7 4E-08 8.8E-13 72.8 7.2 72 111-188 4-80 (95)
223 cd05727 Ig2_Contactin-2-like S 98.7 3.3E-08 7.1E-13 73.2 6.7 72 320-397 12-86 (96)
224 cd05897 Ig2_IL1R2_like Second 98.7 5.8E-08 1.3E-12 72.0 7.9 71 322-397 6-81 (95)
225 cd05845 Ig2_L1-CAM_like Second 98.7 3.1E-08 6.8E-13 73.1 5.5 69 110-186 11-82 (95)
226 TIGR00864 PCC polycystin catio 98.7 0.0011 2.3E-08 76.1 42.3 352 65-522 1750-2112(2740)
227 cd05845 Ig2_L1-CAM_like Second 98.7 6.2E-08 1.4E-12 71.5 6.5 73 318-396 10-84 (95)
228 cd05881 Ig1_Necl-2 First (N-te 98.7 4.2E-07 9.1E-12 67.5 10.7 72 110-185 5-84 (95)
229 cd05872 Ig_Sema4B_like Immunog 98.6 1.4E-07 3E-12 68.2 7.4 77 111-197 5-82 (85)
230 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 2.5E-07 5.5E-12 68.6 8.9 81 321-405 10-104 (104)
231 cd05883 Ig2_Necl-2 Second immu 98.6 6E-07 1.3E-11 64.1 10.3 77 329-406 2-80 (82)
232 cd05714 Ig_CSPGs_LP Immunoglob 98.6 3.3E-07 7.1E-12 71.0 9.7 84 116-199 1-104 (106)
233 PF13927 Ig_3: Immunoglobulin 98.6 2E-07 4.4E-12 67.1 6.6 73 312-392 2-75 (75)
234 cd05881 Ig1_Necl-2 First (N-te 98.6 1.2E-06 2.7E-11 65.0 10.6 72 319-393 5-84 (95)
235 cd05883 Ig2_Necl-2 Second immu 98.5 2.8E-06 6E-11 60.7 10.7 77 225-302 2-80 (82)
236 cd05877 Ig_LP_like Immunoglobu 98.5 1.2E-06 2.6E-11 67.9 9.6 80 116-199 1-104 (106)
237 cd05774 Ig_CEACAM_D1 First imm 98.5 1E-06 2.2E-11 67.1 8.6 79 110-196 6-104 (105)
238 cd05900 Ig_Aggrecan Immunoglob 98.5 1.7E-06 3.7E-11 66.7 9.8 82 116-199 1-110 (112)
239 cd05878 Ig_Aggrecan_like Immun 98.5 2.3E-06 5E-11 66.3 10.4 82 116-199 1-108 (110)
240 cd05751 Ig1_LILRB1_like First 98.5 1.2E-06 2.6E-11 65.4 8.5 74 311-393 2-75 (91)
241 cd05714 Ig_CSPGs_LP Immunoglob 98.4 2.7E-06 5.8E-11 65.9 10.2 83 325-407 1-104 (106)
242 cd05872 Ig_Sema4B_like Immunog 98.4 1.4E-06 3.1E-11 63.0 8.0 76 320-405 5-82 (85)
243 cd05713 Ig_MOG_like Immunoglob 98.4 2.6E-06 5.5E-11 65.2 9.9 79 117-197 1-99 (100)
244 cd00098 IgC Immunoglobulin Con 98.4 1E-06 2.2E-11 66.8 7.4 73 115-187 11-86 (95)
245 cd05879 Ig_P0 Immunoglobulin ( 98.4 4.1E-06 9E-11 65.1 10.9 80 318-397 5-106 (116)
246 cd05761 Ig2_Necl-1-4_like Seco 98.4 3.2E-06 7E-11 61.6 9.2 68 120-188 2-70 (82)
247 cd04983 IgV_TCR_alpha_like Imm 98.4 2.4E-06 5.3E-11 66.6 9.1 75 318-394 5-93 (109)
248 cd07705 Ig2_Necl-1 Second immu 98.4 4.1E-06 8.9E-11 61.0 9.6 68 120-188 2-71 (83)
249 cd04983 IgV_TCR_alpha_like Imm 98.4 2E-06 4.2E-11 67.1 8.3 73 111-186 7-93 (109)
250 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.7E-06 5.8E-11 62.0 8.4 66 329-396 2-70 (82)
251 cd05751 Ig1_LILRB1_like First 98.4 3.6E-06 7.8E-11 62.8 9.3 73 208-289 3-75 (91)
252 cd07705 Ig2_Necl-1 Second immu 98.4 3.8E-06 8.2E-11 61.2 8.8 69 5-80 1-70 (83)
253 PF13927 Ig_3: Immunoglobulin 98.4 8.5E-07 1.8E-11 63.7 5.4 57 225-288 18-75 (75)
254 cd05741 Ig_CEACAM_D1_like Firs 98.3 2.6E-06 5.7E-11 64.0 7.7 77 117-196 1-91 (92)
255 cd05713 Ig_MOG_like Immunoglob 98.3 5.7E-06 1.2E-10 63.3 9.7 80 326-405 1-99 (100)
256 cd00098 IgC Immunoglobulin Con 98.3 2.1E-06 4.5E-11 65.1 7.0 73 324-396 11-87 (95)
257 cd05718 Ig1_PVR_like First imm 98.3 5.8E-06 1.3E-10 63.0 9.5 78 118-197 1-97 (98)
258 PHA03270 envelope glycoprotein 98.3 0.00037 7.9E-09 64.6 22.2 173 164-356 183-365 (466)
259 cd05877 Ig_LP_like Immunoglobu 98.3 1E-05 2.3E-10 62.5 10.9 82 325-407 1-104 (106)
260 cd05902 Ig_Neurocan Immunoglob 98.3 8.4E-06 1.8E-10 62.6 9.9 82 116-199 1-108 (110)
261 cd05900 Ig_Aggrecan Immunoglob 98.3 5.2E-06 1.1E-10 64.0 8.8 83 325-407 1-110 (112)
262 cd05774 Ig_CEACAM_D1 First imm 98.3 5E-06 1.1E-10 63.3 8.5 80 321-405 8-105 (105)
263 cd05718 Ig1_PVR_like First imm 98.3 8E-06 1.7E-10 62.2 9.8 78 327-405 1-97 (98)
264 PHA03273 envelope glycoprotein 98.3 0.00022 4.8E-09 66.7 20.5 164 56-245 198-376 (486)
265 PHA03269 envelope glycoprotein 98.3 0.00021 4.6E-09 67.0 20.4 207 164-393 290-513 (566)
266 PHA03270 envelope glycoprotein 98.3 0.00039 8.4E-09 64.4 21.8 172 56-250 182-363 (466)
267 cd05879 Ig_P0 Immunoglobulin ( 98.3 1.1E-05 2.3E-10 62.8 10.3 79 214-292 5-105 (116)
268 PHA03271 envelope glycoprotein 98.3 0.00024 5.2E-09 65.3 20.2 174 54-249 205-388 (490)
269 PHA03269 envelope glycoprotein 98.3 0.00022 4.7E-09 66.9 20.2 167 56-248 289-471 (566)
270 cd00099 IgV Immunoglobulin var 98.3 3.9E-06 8.4E-11 64.9 7.8 72 113-187 2-91 (105)
271 cd05755 Ig2_ICAM-1_like Second 98.3 8.4E-06 1.8E-10 60.9 9.1 75 216-292 10-87 (100)
272 cd05884 Ig2_Necl-3 Second immu 98.3 6.3E-06 1.4E-10 59.9 8.3 68 120-187 2-70 (83)
273 cd05878 Ig_Aggrecan_like Immun 98.3 1.1E-05 2.5E-10 62.4 10.1 83 325-407 1-108 (110)
274 PHA03273 envelope glycoprotein 98.3 0.00028 6.1E-09 66.0 20.6 168 163-349 198-376 (486)
275 cd05755 Ig2_ICAM-1_like Second 98.2 7.6E-06 1.7E-10 61.1 8.3 74 111-187 10-86 (100)
276 cd05880 Ig_EVA1 Immunoglobulin 98.2 1.6E-05 3.5E-10 62.2 10.3 79 318-396 5-104 (115)
277 cd05775 Ig_SLAM-CD84_like_N N- 98.2 2.9E-06 6.4E-11 64.1 5.9 83 115-197 2-96 (97)
278 cd05899 IgV_TCR_beta Immunoglo 98.2 9.1E-06 2E-10 63.3 8.5 76 317-394 4-95 (110)
279 cd05711 Ig_FcalphaRI Immunoglo 98.2 9.6E-06 2.1E-10 60.8 8.2 67 112-184 10-76 (94)
280 cd05888 Ig1_Nectin-4_like Frst 98.2 2.2E-05 4.7E-10 59.8 9.9 76 328-405 2-99 (100)
281 cd07694 Ig2_CD4 Second immunog 98.2 2.8E-05 6.1E-10 55.4 9.5 75 322-406 10-86 (88)
282 cd05741 Ig_CEACAM_D1_like Firs 98.2 8.4E-06 1.8E-10 61.3 7.5 76 326-404 1-91 (92)
283 cd05901 Ig_Versican Immunoglob 98.1 3.5E-05 7.5E-10 59.3 10.4 38 162-199 78-115 (117)
284 cd00099 IgV Immunoglobulin var 98.1 1.2E-05 2.5E-10 62.3 8.1 74 322-395 2-91 (105)
285 cd05886 Ig1_Nectin-1_like Firs 98.1 3.7E-05 8E-10 57.9 10.2 35 371-405 63-98 (99)
286 PF07686 V-set: Immunoglobulin 98.1 2E-05 4.4E-10 61.9 9.2 88 318-405 8-114 (114)
287 cd05899 IgV_TCR_beta Immunoglo 98.1 1.5E-05 3.2E-10 62.1 8.1 75 213-289 4-94 (110)
288 cd05846 Ig1_MRC-OX-2_like Firs 98.1 1.8E-05 3.9E-10 59.9 8.2 81 117-197 1-96 (97)
289 cd05775 Ig_SLAM-CD84_like_N N- 98.1 1.2E-05 2.7E-10 60.7 7.1 79 325-405 3-96 (97)
290 cd05772 IgC_SIRP Signal-regula 98.1 5.3E-05 1.2E-09 58.4 10.5 75 113-188 17-94 (111)
291 cd05715 Ig_P0-like Immunoglobu 98.1 3.8E-05 8.2E-10 60.4 10.0 78 318-395 5-104 (116)
292 cd04984 IgV_L_lambda Immunoglo 98.1 1.3E-05 2.9E-10 60.9 7.1 67 113-184 2-84 (98)
293 cd07694 Ig2_CD4 Second immunog 98.1 3.5E-05 7.6E-10 54.9 8.5 76 112-198 9-86 (88)
294 cd05884 Ig2_Necl-3 Second immu 98.1 1.6E-05 3.6E-10 57.7 7.0 66 8-80 4-70 (83)
295 cd05711 Ig_FcalphaRI Immunoglo 98.1 5.5E-05 1.2E-09 56.7 10.0 68 216-288 9-76 (94)
296 cd04980 IgV_L_kappa Immunoglob 98.1 3.3E-05 7.2E-10 59.7 9.0 76 316-393 5-93 (106)
297 cd05886 Ig1_Nectin-1_like Firs 98.0 4.5E-05 9.8E-10 57.4 9.2 36 162-197 62-98 (99)
298 cd04980 IgV_L_kappa Immunoglob 98.0 1.4E-05 3E-10 61.8 6.4 69 111-184 9-92 (106)
299 cd04982 IgV_TCR_gamma Immunogl 98.0 2.6E-05 5.6E-10 61.5 7.8 71 111-184 7-98 (116)
300 cd05902 Ig_Neurocan Immunoglob 98.0 8.9E-05 1.9E-09 57.0 10.4 82 326-407 2-108 (110)
301 cd04982 IgV_TCR_gamma Immunogl 98.0 5.2E-05 1.1E-09 59.7 9.3 76 318-393 5-99 (116)
302 PF07686 V-set: Immunoglobulin 98.0 3.5E-05 7.5E-10 60.6 8.3 84 111-197 10-114 (114)
303 cd05901 Ig_Versican Immunoglob 98.0 0.00014 3E-09 56.0 11.1 39 265-303 77-115 (117)
304 smart00407 IGc1 Immunoglobulin 98.0 5.8E-05 1.2E-09 53.9 8.4 67 120-186 2-71 (75)
305 cd05716 Ig_pIgR Immunoglobulin 98.0 3.5E-05 7.6E-10 58.6 7.7 71 113-186 3-87 (98)
306 cd05847 IgC_CH2_IgE CH2 domain 98.0 6.1E-05 1.3E-09 56.1 8.7 75 325-399 13-91 (94)
307 PF08205 C2-set_2: CD80-like C 98.0 5.1E-05 1.1E-09 56.5 8.3 70 222-292 14-86 (89)
308 PHA02987 Ig domain OX-2-like p 98.0 4.2E-05 9.1E-10 62.9 8.1 85 111-199 24-123 (189)
309 cd05880 Ig_EVA1 Immunoglobulin 98.0 7.3E-05 1.6E-09 58.5 9.3 78 214-291 5-103 (115)
310 cd05846 Ig1_MRC-OX-2_like Firs 98.0 9E-05 2E-09 56.1 9.5 79 222-301 1-96 (97)
311 cd05887 Ig1_Nectin-3_like Firs 98.0 0.00011 2.3E-09 54.8 9.6 78 223-301 1-95 (96)
312 cd07696 IgC_CH3 CH3 domain (th 97.9 4E-05 8.6E-10 57.4 7.3 76 112-187 9-87 (96)
313 cd05847 IgC_CH2_IgE CH2 domain 97.9 6E-05 1.3E-09 56.2 8.2 73 116-188 13-88 (94)
314 PHA03271 envelope glycoprotein 97.9 0.0037 7.9E-08 57.8 20.6 170 164-353 208-388 (490)
315 cd05716 Ig_pIgR Immunoglobulin 97.9 7.1E-05 1.5E-09 56.9 8.5 71 322-394 3-87 (98)
316 PF08205 C2-set_2: CD80-like C 97.9 6.9E-05 1.5E-09 55.7 8.2 72 117-188 14-86 (89)
317 cd07706 IgV_TCR_delta Immunogl 97.9 9E-05 2E-09 58.3 9.2 74 318-393 6-94 (116)
318 cd00096 Ig Immunoglobulin doma 97.9 0.00012 2.7E-09 51.4 9.2 66 120-186 1-66 (74)
319 cd05715 Ig_P0-like Immunoglobu 97.9 0.00011 2.4E-09 57.7 9.5 78 214-291 5-104 (116)
320 cd05887 Ig1_Nectin-3_like Firs 97.9 0.00013 2.9E-09 54.3 9.2 78 327-405 1-95 (96)
321 cd05772 IgC_SIRP Signal-regula 97.9 0.0002 4.3E-09 55.2 10.5 72 218-291 17-93 (111)
322 cd05888 Ig1_Nectin-4_like Frst 97.9 0.00013 2.8E-09 55.4 9.5 78 224-301 2-99 (100)
323 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00016 3.6E-09 54.1 9.7 67 326-395 14-84 (93)
324 smart00407 IGc1 Immunoglobulin 97.9 0.00016 3.5E-09 51.6 9.1 66 329-394 2-71 (75)
325 cd00096 Ig Immunoglobulin doma 97.9 0.00017 3.6E-09 50.7 9.1 66 329-394 1-66 (74)
326 cd05720 Ig_CD8_alpha Immunoglo 97.8 5.2E-05 1.1E-09 58.2 6.5 72 113-184 2-90 (104)
327 cd07699 IgC_L Immunoglobulin C 97.8 5.4E-05 1.2E-09 57.4 6.5 75 113-187 13-90 (100)
328 cd05767 IgC_MHC_II_alpha Class 97.8 0.00027 5.8E-09 52.6 9.8 67 221-290 14-84 (94)
329 PF07654 C1-set: Immunoglobuli 97.8 0.00021 4.6E-09 52.2 9.2 70 115-187 6-78 (83)
330 cd07706 IgV_TCR_delta Immunogl 97.8 8.7E-05 1.9E-09 58.4 7.7 71 111-184 8-93 (116)
331 cd05766 IgC_MHC_II_beta Class 97.8 0.00028 6.1E-09 52.7 9.8 71 220-291 12-84 (94)
332 cd07699 IgC_L Immunoglobulin C 97.8 4.9E-05 1.1E-09 57.6 5.8 68 464-532 12-81 (100)
333 cd05768 IgC_CH4 CH4 domain (fo 97.8 4.5E-05 9.8E-10 57.9 5.5 64 466-529 13-80 (102)
334 cd05768 IgC_CH4 CH4 domain (fo 97.8 9.7E-05 2.1E-09 56.1 7.3 74 114-187 13-92 (102)
335 cd05766 IgC_MHC_II_beta Class 97.8 0.00036 7.8E-09 52.1 10.0 71 115-188 12-85 (94)
336 PHA02987 Ig domain OX-2-like p 97.8 0.0003 6.6E-09 57.9 10.2 87 216-303 24-123 (189)
337 cd05719 Ig2_PVR_like Second im 97.8 0.00015 3.2E-09 54.2 7.8 70 3-82 15-85 (95)
338 cd07700 IgV_CD8_beta Immunoglo 97.8 0.00011 2.5E-09 56.7 7.5 69 113-184 2-93 (107)
339 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.0004 8.7E-09 52.0 9.9 67 222-291 14-84 (93)
340 cd07703 Ig2_Nectin-2_like Seco 97.7 0.00018 4E-09 53.5 7.8 74 3-86 15-89 (95)
341 cd05770 IgC_beta2m Class I maj 97.7 0.00019 4.1E-09 53.2 7.7 53 468-522 14-68 (93)
342 cd04984 IgV_L_lambda Immunoglo 97.7 0.00012 2.5E-09 55.7 6.8 70 322-393 2-85 (98)
343 cd05767 IgC_MHC_II_alpha Class 97.7 0.00031 6.7E-09 52.3 8.8 53 468-521 14-68 (94)
344 cd05770 IgC_beta2m Class I maj 97.7 0.00061 1.3E-08 50.5 9.8 69 115-186 13-83 (93)
345 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00022 4.8E-09 53.3 7.5 76 215-291 7-87 (96)
346 cd05719 Ig2_PVR_like Second im 97.7 0.00054 1.2E-08 51.1 9.4 71 116-189 14-85 (95)
347 cd05769 IgC_TCR_beta T cell re 97.6 0.00014 3.1E-09 56.2 6.1 64 463-526 12-77 (115)
348 PF07654 C1-set: Immunoglobuli 97.6 0.00058 1.3E-08 49.9 9.1 69 325-396 7-79 (83)
349 cd05769 IgC_TCR_beta T cell re 97.6 0.00033 7.1E-09 54.2 8.0 79 114-192 15-98 (115)
350 cd05889 Ig1_DNAM-1_like First 97.6 0.00072 1.6E-08 50.4 9.4 75 223-298 1-92 (96)
351 cd05712 Ig_Siglec_N Immunoglob 97.6 0.00057 1.2E-08 53.9 9.5 76 318-393 6-102 (119)
352 cd07697 IgC_TCR_gamma T cell r 97.6 0.00051 1.1E-08 51.2 8.4 68 324-394 14-85 (96)
353 cd05889 Ig1_DNAM-1_like First 97.6 0.00038 8.3E-09 51.9 7.7 74 118-195 1-93 (96)
354 cd07700 IgV_CD8_beta Immunoglo 97.6 0.00038 8.3E-09 53.7 7.9 69 322-392 2-93 (107)
355 cd07703 Ig2_Nectin-2_like Seco 97.6 0.00049 1.1E-08 51.2 8.0 75 118-195 16-91 (95)
356 cd07697 IgC_TCR_gamma T cell r 97.5 0.00085 1.8E-08 50.0 8.7 69 219-290 13-85 (96)
357 cd05712 Ig_Siglec_N Immunoglob 97.5 0.00074 1.6E-08 53.3 8.5 76 214-289 6-102 (119)
358 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.00093 2E-08 49.9 8.3 69 325-394 15-87 (95)
359 cd04981 IgV_H Immunoglobulin ( 97.5 0.001 2.2E-08 52.2 8.9 75 318-392 4-97 (117)
360 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.00093 2E-08 49.5 7.8 75 111-188 10-86 (97)
361 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.00081 1.8E-08 50.2 7.1 56 468-525 15-72 (95)
362 cd04986 IgC_CH2 CH2 domain (se 97.3 0.00046 9.9E-09 51.5 5.2 71 323-395 16-90 (99)
363 cd05720 Ig_CD8_alpha Immunoglo 97.3 0.00074 1.6E-08 51.7 6.6 68 323-392 3-90 (104)
364 cd04981 IgV_H Immunoglobulin ( 97.3 0.00098 2.1E-08 52.3 7.4 75 214-288 4-97 (117)
365 PHA02914 Immunoglobulin-like d 97.3 0.13 2.9E-06 47.6 31.8 156 319-526 272-454 (500)
366 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00057 1.2E-08 45.7 4.5 51 325-393 6-56 (65)
367 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0011 2.3E-08 44.7 5.5 60 325-406 5-64 (69)
368 cd07692 Ig_CD3_epsilon Immunog 97.2 0.00066 1.4E-08 45.4 4.5 51 116-185 6-56 (65)
369 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0013 2.7E-08 44.3 5.4 50 116-184 5-54 (69)
370 PHA02633 hypothetical protein; 97.2 0.0011 2.3E-08 43.4 4.8 38 57-94 19-56 (63)
371 smart00406 IGv Immunoglobulin 97.1 0.0015 3.3E-08 47.4 6.3 61 119-182 1-81 (81)
372 cd04986 IgC_CH2 CH2 domain (se 97.1 0.00088 1.9E-08 50.0 4.7 69 461-533 11-82 (99)
373 smart00406 IGv Immunoglobulin 97.1 0.0028 6.1E-08 45.9 7.1 63 328-390 1-81 (81)
374 cd07689 Ig2_VCAM-1 Second immu 97.1 0.0037 8.1E-08 46.0 7.4 73 219-291 12-87 (99)
375 KOG0613|consensus 97.1 0.0044 9.4E-08 65.9 10.7 260 12-288 213-514 (1205)
376 KOG0613|consensus 97.0 0.0084 1.8E-07 63.9 12.5 255 113-389 240-511 (1205)
377 cd07704 Ig2_Nectin-3-4_like Se 97.0 0.007 1.5E-07 44.9 8.6 74 216-291 10-85 (97)
378 cd05721 IgV_CTLA-4 Immunoglobu 96.9 0.0084 1.8E-07 45.7 8.3 72 319-390 6-93 (115)
379 PHA02633 hypothetical protein; 96.9 0.0033 7.2E-08 41.2 5.0 36 164-199 19-54 (63)
380 KOG1480|consensus 96.8 0.00037 8.1E-09 69.2 0.8 182 207-407 24-220 (909)
381 cd07689 Ig2_VCAM-1 Second immu 96.6 0.014 3.1E-07 43.0 7.4 70 114-184 12-84 (99)
382 PHA02982 hypothetical protein; 96.4 0.027 5.8E-07 47.0 8.8 122 112-246 34-172 (251)
383 PF08204 V-set_CD47: CD47 immu 96.1 0.013 2.8E-07 45.8 5.2 87 323-410 24-124 (130)
384 cd05721 IgV_CTLA-4 Immunoglobu 96.1 0.036 7.8E-07 42.3 7.3 73 214-286 5-93 (115)
385 PF02124 Marek_A: Marek's dise 95.8 1.1 2.4E-05 38.5 16.2 104 133-248 8-117 (211)
386 PF08204 V-set_CD47: CD47 immu 95.4 0.012 2.6E-07 46.0 2.4 82 116-198 26-120 (130)
387 PF02124 Marek_A: Marek's dise 95.4 1.6 3.5E-05 37.5 17.4 104 238-352 8-117 (211)
388 PHA02982 hypothetical protein; 95.1 0.48 1E-05 39.9 11.0 122 216-351 33-173 (251)
389 PHA02914 Immunoglobulin-like d 95.0 3.2 6.9E-05 39.0 27.9 165 216-393 273-466 (500)
390 KOG1480|consensus 95.0 0.012 2.6E-07 59.0 1.7 77 459-535 134-220 (909)
391 KOG4597|consensus 94.8 0.055 1.2E-06 51.2 5.4 94 312-407 197-293 (560)
392 PHA03042 CD47-like protein; Pr 94.6 0.18 3.9E-06 44.4 7.8 72 324-406 29-105 (286)
393 PHA03042 CD47-like protein; Pr 94.5 0.17 3.7E-06 44.6 7.2 70 117-198 31-105 (286)
394 PF07354 Sp38: Zona-pellucida- 94.3 0.068 1.5E-06 46.8 4.6 48 22-78 11-59 (271)
395 PF07354 Sp38: Zona-pellucida- 94.3 0.068 1.5E-06 46.8 4.6 49 130-186 11-60 (271)
396 PF05790 C2-set: Immunoglobuli 93.6 0.79 1.7E-05 32.8 8.2 52 340-405 26-78 (80)
397 PHA03283 envelope glycoprotein 93.4 5.1 0.00011 39.3 15.4 83 56-138 134-233 (542)
398 cd05890 Ig2_Nectin-1_like Seco 93.3 0.42 9E-06 34.8 6.2 75 119-196 22-97 (98)
399 PHA02865 MHC-like TNF binding 92.9 0.59 1.3E-05 43.3 8.2 66 328-394 216-304 (338)
400 cd05890 Ig2_Nectin-1_like Seco 92.7 0.47 1E-05 34.6 5.7 71 8-88 25-96 (98)
401 KOG4597|consensus 92.6 0.17 3.7E-06 48.1 4.5 85 112-199 206-293 (560)
402 PF06832 BiPBP_C: Penicillin-B 92.4 0.8 1.7E-05 33.7 7.1 63 454-517 10-77 (89)
403 PHA03282 envelope glycoprotein 90.9 6.1 0.00013 38.1 12.5 23 164-186 334-356 (540)
404 PF11465 Receptor_2B4: Natural 90.9 0.92 2E-05 33.9 5.8 34 164-197 72-106 (108)
405 PHA03283 envelope glycoprotein 90.8 8.7 0.00019 37.8 13.7 37 164-200 135-171 (542)
406 PF05790 C2-set: Immunoglobuli 90.5 3 6.5E-05 29.8 8.0 34 164-197 44-78 (80)
407 PF11465 Receptor_2B4: Natural 90.3 1.5 3.3E-05 32.8 6.5 33 372-405 72-104 (108)
408 PHA02865 MHC-like TNF binding 90.3 0.95 2.1E-05 42.0 6.7 64 224-289 216-303 (338)
409 PRK14081 triple tyrosine motif 87.1 41 0.00089 35.0 32.9 232 219-524 302-557 (667)
410 PF02480 Herpes_gE: Alphaherpe 86.8 1.8 3.9E-05 42.6 6.5 83 56-138 89-189 (439)
411 PF06328 Lep_receptor_Ig: Ig-l 86.1 3.8 8.1E-05 30.1 6.3 66 111-183 12-82 (89)
412 PF06328 Lep_receptor_Ig: Ig-l 84.4 7.6 0.00017 28.5 7.3 64 218-287 14-82 (89)
413 PHA03281 envelope glycoprotein 83.4 39 0.00085 33.5 13.3 80 56-138 298-394 (642)
414 PF00801 PKD: PKD domain; Int 82.7 2.5 5.4E-05 29.2 4.1 56 465-522 7-63 (69)
415 PHA03052 Hypothetical protein; 82.6 3.2 7E-05 28.0 4.2 35 462-496 5-42 (69)
416 PHA03189 UL14 tegument protein 82.5 17 0.00036 33.1 9.7 80 214-294 59-160 (348)
417 PHA03052 Hypothetical protein; 80.8 4.9 0.00011 27.1 4.5 36 319-354 5-43 (69)
418 PRK14081 triple tyrosine motif 78.3 91 0.002 32.6 34.3 312 114-521 302-649 (667)
419 KOG1026|consensus 76.6 4 8.7E-05 42.5 4.9 163 216-409 201-366 (774)
420 PF03921 ICAM_N: Intercellular 76.0 29 0.00062 25.6 8.9 79 317-407 9-87 (91)
421 PHA03189 UL14 tegument protein 73.6 54 0.0012 30.0 10.3 74 320-394 61-156 (348)
422 cd00146 PKD polycystic kidney 70.1 18 0.0004 25.7 5.9 55 469-523 14-69 (81)
423 KOG1026|consensus 69.0 11 0.00024 39.5 5.9 153 113-297 203-358 (774)
424 PHA03112 IL-18 binding protein 68.7 21 0.00045 28.5 6.1 74 219-292 35-121 (141)
425 PF11141 DUF2914: Protein of u 68.0 36 0.00078 23.3 7.8 59 24-90 7-65 (66)
426 PF03921 ICAM_N: Intercellular 66.4 50 0.0011 24.3 8.0 77 213-303 9-87 (91)
427 PF06832 BiPBP_C: Penicillin-B 65.4 51 0.0011 24.0 10.2 56 328-399 31-86 (89)
428 smart00089 PKD Repeats in poly 64.9 25 0.00054 24.8 5.7 53 468-522 13-66 (79)
429 PHA03286 envelope glycoprotein 64.1 1.5E+02 0.0032 29.0 16.8 80 268-347 128-225 (492)
430 PHA03286 envelope glycoprotein 62.4 90 0.0019 30.4 9.9 36 164-199 128-164 (492)
431 PHA03112 IL-18 binding protein 57.0 35 0.00075 27.3 5.4 76 324-399 36-124 (141)
432 KOG0200|consensus 52.7 84 0.0018 33.0 9.2 115 56-184 13-138 (609)
433 PF02010 REJ: REJ domain; Int 49.1 23 0.00049 35.4 4.3 77 164-245 39-126 (440)
434 PHA03281 envelope glycoprotein 48.5 1.8E+02 0.0039 29.2 9.7 80 164-243 299-394 (642)
435 PF02480 Herpes_gE: Alphaherpe 45.9 17 0.00037 35.9 2.7 38 164-201 90-128 (439)
436 PF11049 KSHV_K1: Glycoprotein 45.3 23 0.00051 23.8 2.4 41 473-516 2-42 (71)
437 PF01688 Herpes_gI: Alphaherpe 44.0 45 0.00097 27.6 4.4 27 56-82 124-150 (161)
438 PF05955 Herpes_gp2: Equine he 43.3 2E+02 0.0043 24.1 14.3 163 120-290 4-179 (226)
439 PHA03282 envelope glycoprotein 39.1 51 0.0011 32.2 4.5 23 56-78 333-355 (540)
440 PF05955 Herpes_gp2: Equine he 37.8 2.4E+02 0.0053 23.6 12.2 62 332-393 113-178 (226)
441 PF12988 DUF3872: Domain of un 34.6 2.3E+02 0.0049 22.7 6.6 50 454-503 32-96 (137)
442 PHA03240 envelope glycoprotein 33.9 57 0.0012 28.0 3.5 28 111-138 32-59 (258)
443 smart00089 PKD Repeats in poly 31.3 1.8E+02 0.004 20.2 7.8 28 114-141 11-39 (79)
444 PHA03240 envelope glycoprotein 31.0 68 0.0015 27.6 3.5 22 54-76 103-124 (258)
445 PF01688 Herpes_gI: Alphaherpe 29.7 1E+02 0.0023 25.5 4.4 26 164-189 125-150 (161)
446 PF00801 PKD: PKD domain; Int 29.2 1.9E+02 0.004 19.6 5.5 28 218-245 7-34 (69)
447 PF02010 REJ: REJ domain; Int 29.0 78 0.0017 31.5 4.5 263 56-336 38-327 (440)
448 KOG0200|consensus 25.6 8.1E+02 0.017 25.8 13.5 113 268-392 14-138 (609)
449 TIGR03096 nitroso_cyanin nitro 25.3 3.4E+02 0.0074 21.8 6.4 59 459-517 58-120 (135)
450 PHA03290 envelope glycoprotein 23.3 1.7E+02 0.0036 27.4 4.8 25 56-80 129-153 (357)
451 PHA03289 envelope glycoprotein 21.3 1.7E+02 0.0037 27.2 4.4 25 56-80 122-146 (352)
452 PF02440 Adeno_E3_CR1: Adenovi 20.6 2.9E+02 0.0062 18.8 5.1 20 324-347 3-22 (63)
No 1
>KOG3513|consensus
Probab=100.00 E-value=5.2e-50 Score=399.97 Aligned_cols=434 Identities=23% Similarity=0.397 Sum_probs=337.5
Q ss_pred cccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccc-cCCCeeEEEEEEccCccee-
Q psy670 6 ELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGS- 83 (540)
Q Consensus 6 ~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~- 83 (540)
.++.|.+.|+|. |+|.|+|||.............. . ++|.|.+.. ..|.|.|+|.|+|..|...
T Consensus 60 v~l~C~A~G~P~------Psy~W~kng~~~d~~~~~~~~~~-~-------G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S 125 (1051)
T KOG3513|consen 60 VTLNCEANGNPE------PSYRWTKNGTEFDPTEYPRVSVL-G-------GTLVITNPDAALDQGIYQCFASNKLGTAVS 125 (1051)
T ss_pred EEEEEEecCCCC------ceeEEEECCeecccccccceeee-c-------CceEecCCcchhhcceeEEEeecccceeec
Confidence 468899999999 99999999998876554444443 3 378888888 9999999999999888753
Q ss_pred eeEEEEEeecCC---------------ccccCCCCC--------------------------------------------
Q psy670 84 STVNLNFSEEDG---------------KLKVPGGKA-------------------------------------------- 104 (540)
Q Consensus 84 ~~~~l~v~~~~~---------------~~~i~~~~~-------------------------------------------- 104 (540)
..+.|.....+. ...+++..+
T Consensus 126 ~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~ 205 (1051)
T KOG3513|consen 126 REARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDF 205 (1051)
T ss_pred cceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhc
Confidence 233333221110 011111111
Q ss_pred -----------------------------------CCCC---CCCccccCCCeEEEEEEEeecCCCceEEEeCCE-eecC
Q psy670 105 -----------------------------------PRFP---KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTK-VIED 145 (540)
Q Consensus 105 -----------------------------------~~~~---~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~-~~~~ 145 (540)
|.+. ........|+.+.|.|-+.|+|.|++.|.|.+. ++..
T Consensus 206 ~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~ 285 (1051)
T KOG3513|consen 206 GNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR 285 (1051)
T ss_pred CceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc
Confidence 0010 012334579999999999999999999999766 3332
Q ss_pred CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeE
Q psy670 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI 225 (540)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 225 (540)
+..... +...|.|.+++.+|+|.|.|.++|..|.....+.+.|.. +|.++..+.+..+..|+.+
T Consensus 286 --r~~~~~-------~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-------~P~w~~~~~d~~~~~gs~v 349 (1051)
T KOG3513|consen 286 --RATYSN-------YGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-------PPYWLQKPQDTEADTGSNV 349 (1051)
T ss_pred --ceeeec-------cccEEEecccCcCCCeEEEEEEecccccceeeEEEEEec-------CchhhcccceeEecCCCCe
Confidence 222221 122899999999999999999999999999999999996 8889999999999999999
Q ss_pred EEEEEecccCCCeEEEEeCCEEeeccCc---eEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 226 QMKCKCSAKPRPEVKWFKADKLVKESSK---IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 226 ~l~C~~~~~p~~~v~W~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
.+.|.+.|.|.++++|++||.++....+ ..+.. .+|.|.+++..|+|.|.|.|+|..|.....+.|.|.
T Consensus 350 ~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~--------g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~ 421 (1051)
T KOG3513|consen 350 TLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD--------GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL 421 (1051)
T ss_pred EEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC--------CEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence 9999999999999999999999986655 33322 289999999999999999999999999999999998
Q ss_pred eccCCCCCCCeEEeCCc--eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670 303 AEAEPEGDPPTFIEKPK--IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK 380 (540)
Q Consensus 303 ~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 380 (540)
.. +|.+...+. ...+..|..+.|.|...+.|.|.+.|.+++..+..+.++. +..+| +|.|.+++.
T Consensus 422 a~------~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~--i~edG-----tL~I~n~t~ 488 (1051)
T KOG3513|consen 422 AS------APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIR--ILEDG-----TLEISNVTR 488 (1051)
T ss_pred cc------CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEE--ECCCC-----cEEecccCc
Confidence 85 455544442 3467789999999999999999999999988665555543 33445 799999999
Q ss_pred CCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC
Q psy670 381 EDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV 460 (540)
Q Consensus 381 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~ 460 (540)
+|+|.|+|.|+|..|.......|.|.. +++|...
T Consensus 489 ~DaG~YtC~A~N~~G~a~~~~~L~Vkd----------------------------------------------~tri~~~ 522 (1051)
T KOG3513|consen 489 SDAGKYTCVAENKLGKAESTGNLIVKD----------------------------------------------ATRITLA 522 (1051)
T ss_pred ccCcEEEEEEEcccCccceEEEEEEec----------------------------------------------CceEEec
Confidence 999999999999999999999999999 9999999
Q ss_pred CcEEEecCCCeEEEEEEEeeec--CCceEEEecCeecCCC---C------------eEEEEEEecCCeEEEEEEeeeeee
Q psy670 461 PKVVTISKKKTVVIECKVMSMY--EPSVTWMKEKNTVKED---N------------KHVVHIEQVKDVSMNFELWLGIVE 523 (540)
Q Consensus 461 ~~~~~~~~g~~~~l~C~v~g~p--~~~v~W~~~~~~l~~~---~------------~~~~~~~~~~~g~y~c~~~~~~~~ 523 (540)
|....+..|+.++|.|.+.-.+ ...|.|.+||..+... . .-+-++...+.|.|+|.+.. .+.
T Consensus 523 P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT-~~D 601 (1051)
T KOG3513|consen 523 PSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQT-ALD 601 (1051)
T ss_pred cchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEE-eec
Confidence 9999999999999999998554 4488999999977533 1 11224566789999999876 333
Q ss_pred eeCCeeEEEEEecc
Q psy670 524 KRGPSIKIIYYIAP 537 (540)
Q Consensus 524 ~~~~~~~~~~~~~~ 537 (540)
.-...+.+++.-+|
T Consensus 602 s~s~~A~l~V~gpP 615 (1051)
T KOG3513|consen 602 SASARADLLVRGPP 615 (1051)
T ss_pred chhcccceEEecCC
Confidence 33334455555444
No 2
>KOG3513|consensus
Probab=100.00 E-value=1e-43 Score=355.02 Aligned_cols=349 Identities=25% Similarity=0.396 Sum_probs=284.0
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.++|...|+|+ |+|.|.|.|.... ..+..... +..+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 260 ~LECfA~G~P~------P~i~W~k~~g~~~-~~r~~~~~--------~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~ 324 (1051)
T KOG3513|consen 260 KLECFALGNPT------PQIKWRKVDGKPP-PRRATYSN--------YGKVLKIPNVQYEDAGEYECIAENSRGSATHSG 324 (1051)
T ss_pred EEEEEecCCCC------CcEEEEeCCCCCC-Ccceeeec--------cccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence 47799999999 9999999888522 23332221 235999999999999999999999999888999
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCc---eEEEEeecCcceEEE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR---IKMSKKSIGKDTYLL 163 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 163 (540)
.|.|...|..+.- .....+..|+.++|.|.+.|.|.|+|+|++||.++....+ ..+...
T Consensus 325 ~v~v~a~P~w~~~---------~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g--------- 386 (1051)
T KOG3513|consen 325 HVTVYAPPYWLQK---------PQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG--------- 386 (1051)
T ss_pred EEEEecCchhhcc---------cceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC---------
Confidence 9999887643331 2345677899999999999999999999999999986655 444432
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCce--eecCCCCeEEEEEEecccCCCeEEE
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI--IPNESGTLIQMKCKCSAKPRPEVKW 241 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~p~~~v~W 241 (540)
.|.|.++...|+|.|.|.|+|..|.....+.|.|.+. +|.+...+.. ..+..|..+.|.|.+.+.|.+.++|
T Consensus 387 ~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~------~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W 460 (1051)
T KOG3513|consen 387 TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS------APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSW 460 (1051)
T ss_pred EEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc------CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEE
Confidence 8999999999999999999999999999999999862 4566555443 3566799999999999999999999
Q ss_pred EeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceE
Q psy670 242 FKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIR 321 (540)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~ 321 (540)
.+.+..+..+.++.+..+. +|.|.+++.+|+|.|+|.|.|..|....+..|.|.. ++.++..|...
T Consensus 461 ~k~~~~~~~~~r~~i~edG-------tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd-------~tri~~~P~~~ 526 (1051)
T KOG3513|consen 461 LKGGEKLLQSGRIRILEDG-------TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD-------ATRITLAPSNT 526 (1051)
T ss_pred EcCCcccccCceEEECCCC-------cEEecccCcccCcEEEEEEEcccCccceEEEEEEec-------CceEEeccchh
Confidence 9999866666666553332 799999999999999999999999999999999987 78888888888
Q ss_pred EeeCCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 322 SEQGGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
.+..|++++|.|.+...+. ..+.|.+||..+............++... ..|+|.+++.+|+|.|+|.|.-...+.++
T Consensus 527 ~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~ 605 (1051)
T KOG3513|consen 527 DVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDS-GRLTIANVSLEDSGKYTCVAQTALDSASA 605 (1051)
T ss_pred hhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCc-cceEEEeeccccCceEEEEEEEeecchhc
Confidence 8999999999999987664 46899999998764333222222333222 47999999999999999999887777788
Q ss_pred EEEEEEEEEE
Q psy670 400 NLTLNIEMVR 409 (540)
Q Consensus 400 ~~~l~V~~~~ 409 (540)
.+.|.|..+|
T Consensus 606 ~A~l~V~gpP 615 (1051)
T KOG3513|consen 606 RADLLVRGPP 615 (1051)
T ss_pred ccceEEecCC
Confidence 8888888733
No 3
>KOG4222|consensus
Probab=100.00 E-value=5.9e-39 Score=317.23 Aligned_cols=429 Identities=24% Similarity=0.408 Sum_probs=318.3
Q ss_pred cccceeeeCcceeEEeecceeeeeecCeecccC--CceEEEEecCccceeeEEEEEE--cccccCCCeeEEEEEEccCcc
Q psy670 6 ELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMS--DRLSSTLVQDQSRLYYLAVLTI--KNVQKSDSGEYKVIAKNKNGE 81 (540)
Q Consensus 6 ~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~i--~~~~~~D~G~Y~C~~~~~~~~ 81 (540)
+.+.|..+|.|+ |+|+|||+|+++... ...++.+ .++ .++ -|.+ -.....|.|.|+|.+.|..|.
T Consensus 49 atlnc~asG~pp------Pti~w~k~G~~~~~~e~~shR~~l-p~g-sLf---~l~~ahg~~a~~d~G~y~cvasn~~g~ 117 (1281)
T KOG4222|consen 49 ATLNCKASGDPP------PTIEWYKDGENVFKGEPGSHRFLL-PDG-SLF---LLRLAHGKKAGHDHGVYSCVASNRLGE 117 (1281)
T ss_pred ceeecCCCCCCC------CceecccCCcccCCCCCCCcceec-CCc-cEE---EEecccCCcccCCCceeEeeecCccce
Confidence 456699999998 999999999755332 2233333 333 222 1222 111233999999999999887
Q ss_pred eee-eEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeec--CCCceEEEEeecC
Q psy670 82 GSS-TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIE--DTGRIKMSKKSIG 157 (540)
Q Consensus 82 ~~~-~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~ 157 (540)
..+ -..|.+.....-+.+ ....+.+..|+.+.|.|-- .|+|.+.+.|.|+|+++. ...+..+....
T Consensus 118 avSr~a~L~vavlrddfrv--------~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG-- 187 (1281)
T KOG4222|consen 118 AVSRGASLIVAVLRDDFRV--------SPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG-- 187 (1281)
T ss_pred eeecCceEEEEEechhccc--------CcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC--
Confidence 543 333333322211222 1223566789999999977 688999999999999886 22333222211
Q ss_pred cceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236 (540)
Q Consensus 158 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 236 (540)
.|.|.+++..|+|.|.|++.|..|.. +...+|.|.+ .|.+...+....+..|..+.+.|.+.|.|.
T Consensus 188 ------~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-------~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~ 254 (1281)
T KOG4222|consen 188 ------NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-------KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ 254 (1281)
T ss_pred ------cEEEeccccCCCceeeeeecccccccccccceeeecc-------CCccccccccceeecccccccccccCCCCC
Confidence 79999999999999999999999875 6677888886 888999999999999999999999999999
Q ss_pred CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEe
Q psy670 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIE 316 (540)
Q Consensus 237 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~ 316 (540)
+.+.|.+++..+.... +.+..+.. +|.|.+++..|.|.|.|.+.|..|.......++|.+ +|.+..
T Consensus 255 P~Vrwkk~~~~~P~~r-y~i~~d~q------tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-------pP~f~k 320 (1281)
T KOG4222|consen 255 PTVRWKKDDPSLPRSR-YSILDDTQ------TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-------PPSFGK 320 (1281)
T ss_pred CceeeeccCCCCCccc-eeeeeccc------cccccccCCCcccceeeeccccccccccccceEEec-------Cccccc
Confidence 9999999776665433 33332211 789999999999999999999999999999999988 888888
Q ss_pred CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
.+.+..+..|..++|.|.+.|+|.|.+.|.+.|..... ....+..+...+ +|.|.+++..|.|.|.|..
T Consensus 321 kp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g-----~L~it~v~~~d~g~Yvcq~ 395 (1281)
T KOG4222|consen 321 KPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG-----TLTITNVRQSDEGYYVCQT 395 (1281)
T ss_pred ccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC-----CcccccccccccceEeecc
Confidence 88888899999999999999999999999997653221 122222233333 7999999999999999998
Q ss_pred EcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeee-eeeceeecCCcEEEecCC
Q psy670 391 KNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTL-SVVPVIREVPKVVTISKK 469 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~i~~~~~~~~~~~g 469 (540)
.+..+.......+.+... +.. ..+|.|...+.+.++.++
T Consensus 396 ~~~~~ss~~~a~~~qt~~----------------------------------------~~~~rPpp~i~~g~~nQtl~v~ 435 (1281)
T KOG4222|consen 396 QTSAGSSLTKAYLEQTDV----------------------------------------LTDSRPPPIIEQGPANQTLPVG 435 (1281)
T ss_pred cccccccccceeEEEEee----------------------------------------eccCCCCceeeecccccccccC
Confidence 888877655555544430 111 226677788888899999
Q ss_pred CeEEEEEEEeeecCCceEEEecCeecCCCCeEE----------EEEEecCCeEEEEEEeeeeeeeeCC
Q psy670 470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV----------VHIEQVKDVSMNFELWLGIVEKRGP 527 (540)
Q Consensus 470 ~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~----------~~~~~~~~g~y~c~~~~~~~~~~~~ 527 (540)
..+.|.|.+.|.|.+.+.|++++-.+...+.+. -.....|.|.|+|.+.+..-+..+.
T Consensus 436 s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wS 503 (1281)
T KOG4222|consen 436 STASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWS 503 (1281)
T ss_pred cccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccc
Confidence 999999999999999999999987765332211 1334478999999998776655543
No 4
>KOG4221|consensus
Probab=100.00 E-value=4.4e-35 Score=291.65 Aligned_cols=352 Identities=23% Similarity=0.408 Sum_probs=268.4
Q ss_pred ccccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc-----CCCeeEEEEEEccC
Q psy670 5 KELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-----SDSGEYKVIAKNKN 79 (540)
Q Consensus 5 ~~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-----~D~G~Y~C~~~~~~ 79 (540)
+.|+.|+...... ..+.|.|.|||..+......+.....++ +|.|.++.. -|.|.|+|.|+-..
T Consensus 56 svlLecs~~~~~~----~~~~i~wkkDg~~l~e~~d~~~~~LsNg-------Sl~i~~v~~~kh~~~~eg~Yqc~atv~~ 124 (1381)
T KOG4221|consen 56 SVLLECSAYAAGG----TSVKIEWKKDGSQLNEVYDDRRQLLSNG-------SLYISSVLASKHNKVDEGVYQCLATVED 124 (1381)
T ss_pred ceEEeccccccCC----CCeeEEEccCchhhhhhhhhHHhhccCC-------ceeEeeecccccccccCceEEEEEEccc
Confidence 5688898663331 2289999999998765433333344444 788888877 89999999998762
Q ss_pred -cc-eeeeEEEEEeecCCccccCCCCCCCCC--CCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEee
Q psy670 80 -GE-GSSTVNLNFSEEDGKLKVPGGKAPRFP--KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155 (540)
Q Consensus 80 -~~-~~~~~~l~v~~~~~~~~i~~~~~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 155 (540)
|. .+.++.|.+...+ .|. .....+..|+++.|.|.+.+.|.+.+.|.++..++..+.++....+.
T Consensus 125 ~gsi~Sr~a~v~~a~~~-----------~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG 193 (1381)
T KOG4221|consen 125 VGSILSRTAKVALAGLA-----------DFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG 193 (1381)
T ss_pred cceeecceEEEEecccC-----------ccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC
Confidence 33 2445555554322 221 23456889999999999999888899999999988777765554332
Q ss_pred cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc
Q psy670 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234 (540)
Q Consensus 156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 234 (540)
.|.|.++...|.|.|+|.+.+.... .+..+.|+|...+. ......|...+....+.+|+++.|.|.+.+.
T Consensus 194 --------~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~-~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~ 264 (1381)
T KOG4221|consen 194 --------ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPG-ALNKLVFLDEPSNAVVVEGDDVVLECVVSGV 264 (1381)
T ss_pred --------cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcc-cccceeeecCCCccccccCCcEEEEEEecCC
Confidence 8999999999999999999987643 35666777763222 2223446778888999999999999999999
Q ss_pred CCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeE
Q psy670 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF 314 (540)
Q Consensus 235 p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~ 314 (540)
|.+.|.|.+|+..+.-.. ..+..... ..|.|.+++.+|+|.|+|+|.|......+..++.|.. +|.|
T Consensus 265 p~p~v~Wlrng~~i~~ds-~rivl~g~-----~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a-------~P~~ 331 (1381)
T KOG4221|consen 265 PKPSVKWLRNGEKISVDS-YRIVLVGG-----SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA-------PPGF 331 (1381)
T ss_pred CCCceEEeeCCeeeeecc-eEEEEecc-----cceEEeccccccCceEEEEecCCCcccccceEEEEEc-------CCCC
Confidence 999999999999887654 33322211 2689999999999999999999666667778888877 7778
Q ss_pred EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
+..|......++.++.|.|.+.|.|.+.+.|+++|..+..++.+++ ..++ .|.|..+-..|.|-|+|.++|..
T Consensus 332 ~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki--~~~~-----~lrIlgi~~sdeg~yQcvaen~~ 404 (1381)
T KOG4221|consen 332 TKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKI--VGGG-----NLRILGIVKSDEGFYQCVAENDA 404 (1381)
T ss_pred CCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEe--cCCC-----CcEEEEEecccchhhhhhhccCc
Confidence 8888888888999999999999999999999999998877665443 2232 25666666789999999999999
Q ss_pred eeeEEEEEEEEEE
Q psy670 395 GELNANLTLNIEM 407 (540)
Q Consensus 395 g~~~~~~~l~V~~ 407 (540)
|.......+.|..
T Consensus 405 G~a~a~a~l~vv~ 417 (1381)
T KOG4221|consen 405 GSAQAAAQLEVVP 417 (1381)
T ss_pred ccccchhhheecc
Confidence 9998888886654
No 5
>KOG4221|consensus
Probab=100.00 E-value=5.5e-33 Score=276.79 Aligned_cols=334 Identities=19% Similarity=0.383 Sum_probs=260.5
Q ss_pred ccccCCCeEEEEEEEee--cCCCceEEEeCCEeecCC--CceEEEEeecCcceEEEEEEEcCCCC-----CCCeEEEEEE
Q psy670 112 TIHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLLRLEINNPTK-----DDGGNYRCNA 182 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~-----~d~G~Y~C~~ 182 (540)
....+|.++.|.|.... .+...|.|.+||..+... .+.....+ . +|.|.++.. -++|.|+|.+
T Consensus 49 ~d~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsN-----g---Sl~i~~v~~~kh~~~~eg~Yqc~a 120 (1381)
T KOG4221|consen 49 SDAMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSN-----G---SLYISSVLASKHNKVDEGVYQCLA 120 (1381)
T ss_pred cccccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccC-----C---ceeEeeecccccccccCceEEEEE
Confidence 34478999999999833 346789999999877543 22222211 1 677777766 7899999999
Q ss_pred EcC-Cce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEec
Q psy670 183 CNS-IGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260 (540)
Q Consensus 183 ~~~-~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~ 260 (540)
+-. .|. .+..+.|.+.. .+.|...+...++..|+.+.|.|.+.+.|.+.+.|.++..++....++....+.
T Consensus 121 tv~~~gsi~Sr~a~v~~a~-------~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG 193 (1381)
T KOG4221|consen 121 TVEDVGSILSRTAKVALAG-------LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG 193 (1381)
T ss_pred EccccceeecceEEEEecc-------cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC
Confidence 876 344 36667777765 555666777888999999999999999888899999999988776654443332
Q ss_pred CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC
Q psy670 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p 339 (540)
.|.|.+++..|.|.|+|.+++.... .+..+.|+|...+.. .....|+..|....+.+|+++.|.|.+.+.|
T Consensus 194 -------~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~-~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p 265 (1381)
T KOG4221|consen 194 -------ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA-LNKLVFLDEPSNAVVVEGDDVVLECVVSGVP 265 (1381)
T ss_pred -------cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc-ccceeeecCCCccccccCCcEEEEEEecCCC
Confidence 7999999999999999999986433 355566777632221 2234467778888899999999999999999
Q ss_pred CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCc
Q psy670 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNK 419 (540)
Q Consensus 340 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~ 419 (540)
.|.|.|.+||..+..++ .++.....+ .|.|.+++..|+|.|+|+|+|......+...|+|..
T Consensus 266 ~p~v~Wlrng~~i~~ds-~rivl~g~~-----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a------------ 327 (1381)
T KOG4221|consen 266 KPSVKWLRNGEKISVDS-YRIVLVGGS-----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA------------ 327 (1381)
T ss_pred CCceEEeeCCeeeeecc-eEEEEeccc-----ceEEeccccccCceEEEEecCCCcccccceEEEEEc------------
Confidence 99999999999997765 333322222 799999999999999999999877888889999998
Q ss_pred ceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC
Q psy670 420 GIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499 (540)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~ 499 (540)
+|.|...|.+....++.++.|.|.+.|.|.|.+.|||||..+..++
T Consensus 328 ----------------------------------~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsd 373 (1381)
T KOG4221|consen 328 ----------------------------------PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSD 373 (1381)
T ss_pred ----------------------------------CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCccc
Confidence 8999999999899999999999999999999999999998776543
Q ss_pred e---------EEEEEEecCCeEEEEEEeee
Q psy670 500 K---------HVVHIEQVKDVSMNFELWLG 520 (540)
Q Consensus 500 ~---------~~~~~~~~~~g~y~c~~~~~ 520 (540)
. .++-+-..|.|.|.|.+++.
T Consensus 374 y~ki~~~~~lrIlgi~~sdeg~yQcvaen~ 403 (1381)
T KOG4221|consen 374 YFKIVGGGNLRILGIVKSDEGFYQCVAEND 403 (1381)
T ss_pred ceEecCCCCcEEEEEecccchhhhhhhccC
Confidence 3 33355667899999988753
No 6
>KOG4222|consensus
Probab=100.00 E-value=4e-32 Score=269.16 Aligned_cols=352 Identities=26% Similarity=0.381 Sum_probs=270.1
Q ss_pred cccceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee
Q psy670 6 ELKSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS 84 (540)
Q Consensus 6 ~~~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~ 84 (540)
..++|.-- |.|. +.+.|.|||.++.....-.+.+..+| .|.|.+++.+|+|.|.|.+.|..|..++
T Consensus 149 avlEcgpP~ghpe------ptvSw~Kdg~pl~~~~~~~~~lisgG-------~LlIsnvrksD~GtY~CVatNmvG~ReS 215 (1281)
T KOG4222|consen 149 AVLECGPPRGHPE------PTVSWVKDGKPLDHYDVPIIALISGG-------NLLISNVRKSDEGTYACVATNMVGERES 215 (1281)
T ss_pred eEEeccCCCCCCC------CcceeecCCCccccccceeEEEecCC-------cEEEeccccCCCceeeeeeccccccccc
Confidence 34566644 6776 99999999999874333334444555 8999999999999999999999998654
Q ss_pred -eEEEEEeecCCccccCCCCCCCCCC--CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceE
Q psy670 85 -TVNLNFSEEDGKLKVPGGKAPRFPK--KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161 (540)
Q Consensus 85 -~~~l~v~~~~~~~~i~~~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (540)
...|.|.+.+ .|.. ....+..|..+.+.|.+.|.|.+.+.|.+++..+... ++.+..+.
T Consensus 216 ~~A~lsv~e~P-----------~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i~~d~------ 277 (1281)
T KOG4222|consen 216 IPARLSVQEKP-----------WFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS-RYSILDDT------ 277 (1281)
T ss_pred ccceeeeccCC-----------ccccccccceeecccccccccccCCCCCCceeeeccCCCCCcc-ceeeeecc------
Confidence 5677776554 2222 2346778999999999999999999999977766543 33333221
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEE
Q psy670 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKW 241 (540)
Q Consensus 162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W 241 (540)
.+|.|.+++..|.|.|.|.++|..|.......++|.+ +|.|...+....+..|..++|.|.+.++|.+.+.|
T Consensus 278 -qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-------pP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW 349 (1281)
T KOG4222|consen 278 -QTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-------PPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFW 349 (1281)
T ss_pred -ccccccccCCCcccceeeeccccccccccccceEEec-------CcccccccCccccccCceEEeeeecCCCCCcceEE
Confidence 1899999999999999999999999999999999986 88888888888888999999999999999999999
Q ss_pred EeCCEEeecc------CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670 242 FKADKLVKES------SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315 (540)
Q Consensus 242 ~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~ 315 (540)
.+.|...... ......+... ..|.|.+++..|.|.|.|...+..+.......+.+.........+|.+.
T Consensus 350 ~keg~q~llf~~~p~~~~~r~svs~~-----g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~ 424 (1281)
T KOG4222|consen 350 LKEGSQDLLFSASPPSSNGRGSVSPT-----GTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIE 424 (1281)
T ss_pred eccCcceecccCCCCCcCccceecCC-----CCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceee
Confidence 9977643221 1111111111 1799999999999999999888777665554444443322223355666
Q ss_pred eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
..+......++..+.|.|.+.+.|.+.+.|.++|-.+...+... .+.. +.+|.|.+....|.|.|+|.+.+..|
T Consensus 425 ~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~-s~~~-----~~~l~i~dl~~~DtG~YTc~as~~~g 498 (1281)
T KOG4222|consen 425 QGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRI-SQQE-----IGSLRIRDLKGPDTGRYTCIASDESG 498 (1281)
T ss_pred ecccccccccCcccccChhhhCCCCCCchhhhcccccccCCccc-ceee-----eceeeeeeeecCCCcceeeeccCccc
Confidence 66777788889999999999999999999999988776544211 1111 12799999999999999999999999
Q ss_pred eeEEEEEEEEEE
Q psy670 396 ELNANLTLNIEM 407 (540)
Q Consensus 396 ~~~~~~~l~V~~ 407 (540)
....+++|.|..
T Consensus 499 es~wSatl~v~~ 510 (1281)
T KOG4222|consen 499 ESTWSATLTVEK 510 (1281)
T ss_pred ccccceeeEhhh
Confidence 999999999876
No 7
>KOG4194|consensus
Probab=99.97 E-value=5.8e-29 Score=231.47 Aligned_cols=271 Identities=25% Similarity=0.474 Sum_probs=212.7
Q ss_pred cccCCCeEEEEEEEee--cCCCceEEEeCCEeecCCC-----ceE-EEEee--cCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 113 IHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIEDTG-----RIK-MSKKS--IGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~~-----~~~-~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
....|+.++|+|.+.+ ..+.++.|.++++...... ++. ..++. .....+.+.|.+.+++..|+|.|.|++
T Consensus 514 ~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVv 593 (873)
T KOG4194|consen 514 SALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVV 593 (873)
T ss_pred hhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEE
Confidence 4558999999999955 3445899999876432210 000 00000 112234458999999999999999999
Q ss_pred EcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEE-eeccCceEEEEec
Q psy670 183 CNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL-VKESSKIKIIVNE 260 (540)
Q Consensus 183 ~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~-l~~~~~~~~~~~~ 260 (540)
+|..|+. +..++++|.. .|.|...|.+.++..|+.+.|.|.+.|.|.|+|.|.|+|.. .+.....++.+..
T Consensus 594 tN~FGStysqk~KltV~~-------~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp 666 (873)
T KOG4194|consen 594 TNHFGSTYSQKAKLTVNQ-------APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP 666 (873)
T ss_pred ecccCcchhheeEEEeec-------cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC
Confidence 9999975 7788888885 89999999999999999999999999999999999998876 4444444444433
Q ss_pred CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC
Q psy670 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~ 340 (540)
++. .+.|.++..+|.|.|+|.|.|..|..+..+.+.|.. .|.+.....+..+..|+.+.|.|.+.+.|.
T Consensus 667 edd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e-------~p~f~~PL~~~~V~~get~vlqC~a~~~~a 735 (873)
T KOG4194|consen 667 EDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE-------TPSFSIPLEDQLVVVGETLVLQCLAEGAPA 735 (873)
T ss_pred CCC----EEEEecccccccceeEEeeeccccceeeceEEEEec-------CCcccccccceEEEecceEEEEEecCCCCC
Confidence 333 688999999999999999999999999999999987 455555567788999999999999999876
Q ss_pred -CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 341 -PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 341 -~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
|.+.|+|+++++.-..+... .++++ -|.+.....+|+|.|+|...|..|.....+.+.+..
T Consensus 736 ~pr~~W~k~d~pil~t~rh~f---~d~dQ---llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 736 DPRLEWFKEDKPILITERHTF---PDGDQ---LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred CccccccCCCCceEEeecccC---CCCCe---EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 99999999998865543322 23333 688888889999999999999999887777777665
No 8
>KOG4194|consensus
Probab=99.97 E-value=2.1e-29 Score=234.32 Aligned_cols=261 Identities=20% Similarity=0.410 Sum_probs=207.6
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecc--cCCCeEEEEeCCEEeeccC-----ceEEEE----ecCCCeEEEEEEEeCCC
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSA--KPRPEVKWFKADKLVKESS-----KIKIIV----NEQDDTYEIICEITDPI 275 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~~~l~~~~-----~~~~~~----~~~~~~~~~~l~i~~~~ 275 (540)
.|.+...|..+....|..++|+|.+.+ ..+..+.|.++........ .+.... ..+...+.+.|.+.++.
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 567777777777778999999999976 4566899999876432211 110000 01222334579999999
Q ss_pred CCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE-cc
Q psy670 276 GPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE-LQ 353 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~-~~ 353 (540)
..|.|.|.|+++|..|+. +..+.+.|.. .|.|...|.+.....|+...|.|.+.|.|.|+|.|.++|.. .+
T Consensus 583 ~td~grYQCVvtN~FGStysqk~KltV~~-------~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP 655 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQ-------APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP 655 (873)
T ss_pred cccCceEEEEEecccCcchhheeEEEeec-------cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence 999999999999999975 5567777766 78899999999999999999999999999999999998765 66
Q ss_pred CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeeccc
Q psy670 354 QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSY 433 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (540)
....-++.+..+.+ .+.|.++..+|.|.|+|.|.|.+|..+.+++|.|.+
T Consensus 656 AA~eRRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e-------------------------- 705 (873)
T KOG4194|consen 656 AARERRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE-------------------------- 705 (873)
T ss_pred hhhhheeeecCCCC----EEEEecccccccceeEEeeeccccceeeceEEEEec--------------------------
Confidence 66665666666655 789999999999999999999999999999999998
Q ss_pred ccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC-CceEEEecCeecCCCCe-------EEE--
Q psy670 434 HRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE-PSVTWMKEKNTVKEDNK-------HVV-- 503 (540)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~-~~v~W~~~~~~l~~~~~-------~~~-- 503 (540)
.|.+..+.....+..|+++.|.|.+.|.|. |...|+|++++|.-..+ ..+
T Consensus 706 --------------------~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv 765 (873)
T KOG4194|consen 706 --------------------TPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVV 765 (873)
T ss_pred --------------------CCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEE
Confidence 777787788889999999999999999887 89999999998754332 222
Q ss_pred -EEEecCCeEEEEEEeeeeeee
Q psy670 504 -HIEQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 504 -~~~~~~~g~y~c~~~~~~~~~ 524 (540)
.....+.|.|+|++.....-.
T Consensus 766 ~~~~~~daG~yTcem~~~~~~~ 787 (873)
T KOG4194|consen 766 KENLVEDAGIYTCEMSNTLGTE 787 (873)
T ss_pred EehhhhhcceEEEEEEeeccce
Confidence 233468999999998654433
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=3.7e-27 Score=220.43 Aligned_cols=256 Identities=19% Similarity=0.317 Sum_probs=176.0
Q ss_pred ccccCCCeEEEEEEE-----eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 112 TIHQDGDLLVMECVL-----EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
..+.+|+.+.|.|.+ .|.|.+++.|+|+|.... +.... ... ..|.|.++..+|+|.|+|.+.|..
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~----~~g---~~l~i~~~~~~DsG~Y~C~a~N~~ 105 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPI----DNG---SNMLILNPTQSDSGIYICITKNET 105 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEc----cCC---ceEEEcccCcccCeEEEEEEECCC
Confidence 355689999999997 588889999999875321 11111 111 158899999999999999999998
Q ss_pred ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-----cccCCCeEEEEeCCEEeeccCceEEEEecC
Q psy670 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-----SAKPRPEVKWFKADKLVKESSKIKIIVNEQ 261 (540)
Q Consensus 187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~ 261 (540)
+.....+.|+|.... ++.+...+....+.+|..+.|.|.. .+.|.+.++|++++. + ...+... . .
T Consensus 106 g~~~~s~~L~V~~~~-----~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~--~-~ 175 (326)
T PHA02785 106 YCDMMSLNLTIVSVS-----ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQ--R-T 175 (326)
T ss_pred cceEEEEEEEEEecC-----CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEe--c-C
Confidence 887778888776432 1222222233445689999999972 357888999988642 2 1122211 1 1
Q ss_pred CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE----EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc
Q psy670 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL----NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337 (540)
Q Consensus 262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~----~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~ 337 (540)
...|.|.+++.+|.|.|+|.+.|..+...... .+.|... ..+|. +..|....+..|+.++|.|.+.|
T Consensus 176 ----~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~----~~pp~-~~~p~~~~~~~G~~v~L~C~a~g 246 (326)
T PHA02785 176 ----PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR----IIPPT-MQLPEGVVTSIGSNLTIACRVSL 246 (326)
T ss_pred ----CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc----CCCce-ecCCCcEEecCCCcEEEEEEEEC
Confidence 12799999999999999999999877654332 3333321 22443 34456677788999999999999
Q ss_pred cCCC---eEEEEECCEEccCCCc---eEEEEEe-----c-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 338 KPMP---EIVWFHEGKELQQTDR---ISWNVTL-----K-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 338 ~p~~---~i~W~~~~~~~~~~~~---~~~~~~~-----~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
.|.+ .+.|++||..+..... .+..... + .......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 8864 8999999998864321 1111111 0 0112348999999999999999999998743
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=3.9e-26 Score=213.57 Aligned_cols=237 Identities=20% Similarity=0.300 Sum_probs=161.8
Q ss_pred ceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCC
Q psy670 24 FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGK 103 (540)
Q Consensus 24 ~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~ 103 (540)
++++|+|+|.... + .... .++ ..|.|.+++.+|+|.|+|.+.|..|....++.|+|.... +..+.
T Consensus 61 ~~i~W~K~g~~~~---~-~~~~-~~g------~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~-~~~~~--- 125 (326)
T PHA02785 61 LDILWEKRGADND---R-IIPI-DNG------SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVS-ESNID--- 125 (326)
T ss_pred ceEEEEECCCccc---e-EEEc-cCC------ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecC-CCccc---
Confidence 8999999985322 1 1111 122 358899999999999999999999887888888886543 11111
Q ss_pred CCCCCCCCccccCCCeEEEEEEE-----eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670 104 APRFPKKPTIHQDGDLLVMECVL-----EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY 178 (540)
Q Consensus 104 ~~~~~~~~~~v~~G~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 178 (540)
+...+..+.+|+.+.|.|.. .+.|.+.+.|+++.. + ...++.... . ..|.|.+++.+|+|.|
T Consensus 126 ---~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~-----~---~~L~i~~v~~~d~G~Y 192 (326)
T PHA02785 126 ---LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRT-----P---GIITIEDVRKNDAGYY 192 (326)
T ss_pred ---eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecC-----C---CeEEEeecChhhCeEE
Confidence 11234457799999999972 356888999988643 2 222322211 1 2799999999999999
Q ss_pred EEEEEcCCceeEE----EEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeecc
Q psy670 179 RCNACNSIGESNA----NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKES 251 (540)
Q Consensus 179 ~C~~~~~~~~~~~----~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~ 251 (540)
+|.+.+..+.... .+.|.|... ..+|.+ ..|....+..|+.++|.|.+.+.|. +.+.|+++|..+...
T Consensus 193 ~C~~~n~~g~~~~~~t~~v~l~V~~~----~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~ 267 (326)
T PHA02785 193 TCVLKYIYGDKTYNVTRIVKLEVRDR----IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED 267 (326)
T ss_pred EEEEEeccCCEEEeEEEEEEEEEecc----CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence 9999998765432 334444421 124443 3445666778999999999998776 479999999987542
Q ss_pred C---ceEEEEec------CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 252 S---KIKIIVNE------QDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 252 ~---~~~~~~~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
. ...+...+ ........|.|.+++.+|.|.|+|.|.|..+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 1 11111111 111234689999999999999999999987443
No 11
>KOG3515|consensus
Probab=99.84 E-value=5.9e-20 Score=180.62 Aligned_cols=430 Identities=15% Similarity=0.192 Sum_probs=257.2
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee-eeE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS-STV 86 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-~~~ 86 (540)
++|.+.|+|+ .+.|.|++.++.+. +++... ...+|.......+.-+.|.|++.|..+... ...
T Consensus 27 l~C~v~~~pp-----~~~~eW~h~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~ 90 (741)
T KOG3515|consen 27 LPCRVNSNPP-----EIDVEWYHSTSGEH--GRYATI---------ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPM 90 (741)
T ss_pred eeeecCCCCC-----CcceEEEecCcccc--cccccc---------cCCceeeecchhhhhhhhhhhhcccccCceecce
Confidence 5699997775 38999999998776 332221 234888999999999999999998854332 334
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE--eecCCCceEEEeCCEeecCCC--ceEEEEeecCcc-eE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL--EASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKD-TY 161 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~-~~ 161 (540)
.+.+..++.-+. .........+..+.+.|.. .+.|.+.+.|..++....... .........+.. ..
T Consensus 91 ~l~v~~~pa~~~---------~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~ 161 (741)
T KOG3515|consen 91 ILDVDYPPACLP---------ELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE 161 (741)
T ss_pred eeccccCccccc---------cccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence 444443331100 0112234577889999966 456778999999877653322 111110111111 22
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcCC---ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC
Q psy670 162 LLRLEINNPTKDDGGNYRCNACNSI---GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP 237 (540)
Q Consensus 162 ~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 237 (540)
.+.+.+...+.++.|.|+|.+.+.. +.......+.+..... ...+..........+|+.+.|.|.+.+ +|.+
T Consensus 162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~----~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~ 237 (741)
T KOG3515|consen 162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCK----GIGITGAQEQQSFTEGQTINLVCNAQGGNPSQ 237 (741)
T ss_pred ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccc----cceecchhhcCcccccceEEEEehhhcCCcch
Confidence 3478888889999999999998843 3333444444443111 222222223356778999999997765 8899
Q ss_pred eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeC
Q psy670 238 EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEK 317 (540)
Q Consensus 238 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~ 317 (540)
.+.|+++.......... .....+.....++.+..-..+......|.+.|. + .....+.+...+ ......
T Consensus 238 ~~~w~~~s~~~~~~sl~--~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~--~~~~~tav~~~~------~~~~Is 306 (741)
T KOG3515|consen 238 QQTWYKDSRPQSESSLL--SQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-L--AASQITAVQVKP------TAVPIS 306 (741)
T ss_pred hhhhccccccchhhhcc--cCCCCCCcccccccccccccchhhhhhccccCc-c--ccceeeeccccc------cccccc
Confidence 99999988766543111 111133333445656555556666888999981 1 222222222211 111112
Q ss_pred CceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 318 PKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+.......|....+.|...+ +|.+.+.|+++.................+......+........|.|.|+|.+.|....
T Consensus 307 t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~ 386 (741)
T KOG3515|consen 307 TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA 386 (741)
T ss_pred CcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc
Confidence 23334778999999998764 67789999997665544333222222233333446677778889999999999988754
Q ss_pred eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeec-CCcEEEecCCCeEEEE
Q psy670 397 LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE-VPKVVTISKKKTVVIE 475 (540)
Q Consensus 397 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~~~~~~~~g~~~~l~ 475 (540)
...+..+.+... .+|.+.. ........+.+....-
T Consensus 387 ~~sss~~~l~~l--------------------------------------------~~p~~L~~~~~~v~~~e~d~~~~~ 422 (741)
T KOG3515|consen 387 HSSSSSFLLPVL--------------------------------------------PSPAFLVRHKTAVVAMEQDHQAAP 422 (741)
T ss_pred cccccceecccc--------------------------------------------CCchhhhhcccceeeccCcccccc
Confidence 443333333321 0343332 2223344455555554
Q ss_pred EEEeeecCC-ceEEEecCeecCCCCeEEE------------EEEecCCeEEEEEEeeee
Q psy670 476 CKVMSMYEP-SVTWMKEKNTVKEDNKHVV------------HIEQVKDVSMNFELWLGI 521 (540)
Q Consensus 476 C~v~g~p~~-~v~W~~~~~~l~~~~~~~~------------~~~~~~~g~y~c~~~~~~ 521 (540)
-.+.+.|.. ++.|.+++-.+........ .+.+.+.|.|.|.++..+
T Consensus 423 ~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~ 481 (741)
T KOG3515|consen 423 LPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSP 481 (741)
T ss_pred CcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCC
Confidence 444466654 9999999887765543211 577789999999887543
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.81 E-value=2.4e-18 Score=150.70 Aligned_cols=162 Identities=22% Similarity=0.346 Sum_probs=114.8
Q ss_pred CCccccCCCeEEEEEEEeecC-----------CCceEEEeCCEee--cC-CCce---EEEEeecCcceEEEEEEEcCCCC
Q psy670 110 KPTIHQDGDLLVMECVLEASP-----------MPDIIWYQGTKVI--ED-TGRI---KMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p-----------~~~v~W~~~~~~~--~~-~~~~---~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
.+..+.+|+++.|.|.+.+.| ...+.|+|++... .. +.+. .....+.+. ....|.|.+++.
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~--r~~~L~I~~v~~ 107 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGD--RSENLWIGNVIN 107 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceec--CCCeEEECCCCh
Confidence 346678999999999986644 3489999987542 11 1110 000011000 123899999999
Q ss_pred CCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-----cCCCeEEEEeCCEE
Q psy670 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-----KPRPEVKWFKADKL 247 (540)
Q Consensus 173 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~ 247 (540)
+|+|.|+|.+.|..+.....+.|.|.. ++ ....+.+|+.+.|.|.+.+ +|.++++|++++..
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~-------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~ 174 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDS-------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI 174 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEec-------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE
Confidence 999999999999888877788887742 11 1234567999999999853 45789999999999
Q ss_pred eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
+....+..+.. .. ..|.|.+++.+|+|.|+|.+......
T Consensus 175 l~~~~r~~~~~--~~----~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 175 VLYTDRIQLRN--NN----STLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred CCCCCCEEEeC--CC----CEEEECcCCHHhCEEEEEEEEEeECC
Confidence 87655544321 11 27999999999999999999986433
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.80 E-value=4.3e-18 Score=149.05 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=114.2
Q ss_pred ceeecCCCCeEEEEEEecccC-----------CCeEEEEeCCEEe--eccCce----EEEEecCCCeEEEEEEEeCCCCC
Q psy670 215 RIIPNESGTLIQMKCKCSAKP-----------RPEVKWFKADKLV--KESSKI----KIIVNEQDDTYEIICEITDPIGP 277 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p-----------~~~v~W~~~~~~l--~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~ 277 (540)
....+.+|+++.|.|.+.++| ..+|.|+|.+... ...... .+...+. ......|.|.+++.+
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRSENLWIGNVINI 108 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCCCeEEECCCChH
Confidence 345677899999999987644 3489999987642 111110 0000100 011237999999999
Q ss_pred CcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-----cCCCeEEEEECCEEc
Q psy670 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-----KPMPEIVWFHEGKEL 352 (540)
Q Consensus 278 d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~i~W~~~~~~~ 352 (540)
|+|.|+|.+.|..+.....+.|.|.. ++ ....+.+|+.+.|.|.+.+ .|.|.|+|+++|.++
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~-------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l 175 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDS-------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV 175 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEec-------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence 99999999999887776677666632 11 1234678999999999863 467899999999999
Q ss_pred cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 353 QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
....++.+ ..++. +|.|.+++.+|+|.|+|.|+..++
T Consensus 176 ~~~~r~~~--~~~~~----~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 176 LYTDRIQL--RNNNS----TLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCCCCEEE--eCCCC----EEEECcCCHHhCEEEEEEEEEeEC
Confidence 76665433 22222 799999999999999999988653
No 14
>KOG3515|consensus
Probab=99.79 E-value=4.4e-18 Score=167.59 Aligned_cols=400 Identities=16% Similarity=0.156 Sum_probs=241.7
Q ss_pred cceeeeeecCeecccCC--ceEEE-EecCccceeeEEEEEEcccccCCCeeEEEEEEccC---cceeeeEEEEEeecCCc
Q psy670 23 NFQMNMYHKGSLLKMSD--RLSST-LVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN---GEGSSTVNLNFSEEDGK 96 (540)
Q Consensus 23 ~~~~~W~k~~~~l~~~~--~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~ 96 (540)
.+.+.|..++.-..... +.... ..-.+ .....+.|.+...+.+|.|.|+|.+.+.. ...-....+.+......
T Consensus 128 ~~nlrW~~n~r~e~~~~~~~~~~~~~a~gs-s~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~ 206 (741)
T KOG3515|consen 128 NPNLRWGFNNRAELNAVNQRGRVGAGALGS-SYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKG 206 (741)
T ss_pred CcceeeeeccEEeecccCCcccccccccCc-eeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccccc
Confidence 39999999987543221 11111 01111 11234688999999999999999999853 22223333444332222
Q ss_pred cccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670 97 LKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175 (540)
Q Consensus 97 ~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 175 (540)
+.+.. ......+.+|+.+.|.|.+ .++|.++++|+++......+..... ..+.......+.+..-..++.
T Consensus 207 ~~~~~------~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~---~~sg~~v~~~~~~~~~r~~~~ 277 (741)
T KOG3515|consen 207 IGITG------AQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQ---EPSGDTVSSTLVLRVGRQDLQ 277 (741)
T ss_pred ceecc------hhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccC---CCCCCcccccccccccccchh
Confidence 22211 1122567899999999977 5678999999998877654311111 112233334566666666667
Q ss_pred eEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCce
Q psy670 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKI 254 (540)
Q Consensus 176 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~ 254 (540)
-...|.+.| ......- +.+..+. -.....+....+..|+...+.|...+ +|.+.+.|+++..........
T Consensus 278 ~~~kc~a~n-~~~~~~~--tav~~~~------~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~ 348 (741)
T KOG3515|consen 278 AQLKCKASN-LLAASQI--TAVQVKP------TAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKA 348 (741)
T ss_pred hhhhccccC-cccccee--eeccccc------ccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCc
Confidence 788899987 2221111 1121100 00111222333667889999998865 888899999966555433322
Q ss_pred EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEE
Q psy670 255 KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMEC 333 (540)
Q Consensus 255 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C 333 (540)
.-............+.+......|.|.|+|.+.+.......+....+...+ +|.++ .........+++.....-
T Consensus 349 ~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~-----~p~~L~~~~~~v~~~e~d~~~~~~ 423 (741)
T KOG3515|consen 349 SSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLP-----SPAFLVRHKTAVVAMEQDHQAAPL 423 (741)
T ss_pred ccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccC-----CchhhhhcccceeeccCccccccC
Confidence 211111222333356667778889999999999876554444444444433 22222 222223333444443333
Q ss_pred EEEccC-CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEE
Q psy670 334 KVKAKP-MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412 (540)
Q Consensus 334 ~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~ 412 (540)
.+.++| .+.+.|.+++.++.............+. .+...++...|.|.|.|.++|..|.....+.+.+..
T Consensus 424 ~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~----~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~----- 494 (741)
T KOG3515|consen 424 PVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAG----LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT----- 494 (741)
T ss_pred cccCCCcccchhheecceecccccCceEEeecccc----ccccceeeeccCCcceeeeccCCCceeeEEeecccc-----
Confidence 333554 5579999999988776654444333332 344556888999999999999999988888777766
Q ss_pred EeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCC--ceEEEe
Q psy670 413 YRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMK 490 (540)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~ 490 (540)
.|.+.........-.|.++.+.|.....+.- .+.|.+
T Consensus 495 -----------------------------------------sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r 533 (741)
T KOG3515|consen 495 -----------------------------------------SPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPR 533 (741)
T ss_pred -----------------------------------------CCcccccccccccCCCCcccceeeccccccchhhhcccc
Confidence 6666655555566678889999999876644 789999
Q ss_pred cCeecC
Q psy670 491 EKNTVK 496 (540)
Q Consensus 491 ~~~~l~ 496 (540)
.+.+..
T Consensus 534 ~ge~~~ 539 (741)
T KOG3515|consen 534 SGEPPS 539 (741)
T ss_pred cCCCCc
Confidence 988764
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.64 E-value=4.8e-15 Score=112.32 Aligned_cols=92 Identities=23% Similarity=0.374 Sum_probs=79.1
Q ss_pred CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 391 (540)
|.|+..+....+..|+.+.|.|.+.|.|++.+.|+++|..+..+.++....... .+.|.|.++..+|+|.|+|.|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~----~s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTEN----SSKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCC----eeEEEECCCChhhCEEEEEEEE
Confidence 456677788889999999999999999999999999999998766554432211 2389999999999999999999
Q ss_pred cCCeeeEEEEEEEEEE
Q psy670 392 NFHGELNANLTLNIEM 407 (540)
Q Consensus 392 n~~g~~~~~~~l~V~~ 407 (540)
|..|....++.|.|..
T Consensus 77 N~~G~~~~~~~l~V~~ 92 (98)
T cd05762 77 NKLGSRQAQVNLTVVD 92 (98)
T ss_pred cCCCceeEEEEEEEec
Confidence 9999999999999987
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=1.7e-14 Score=107.12 Aligned_cols=88 Identities=26% Similarity=0.439 Sum_probs=73.8
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....+.. ..+. .|.|.+++.+|+|.|+|.|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~----~~~~----~L~I~~v~~~D~G~Y~C~A 72 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS----MSGA----VLKIFNIQPEDEGTYECEA 72 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe----cCCC----EEEECcCChhhCEEEEEEE
Confidence 4567777778889999999999999999999999999998776543321 2222 7999999999999999999
Q ss_pred EcCCeeeEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIE 406 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~ 406 (540)
.|..|....++.|.|+
T Consensus 73 ~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 73 ENIKGKDKHQARVYVQ 88 (88)
T ss_pred EcCCCceEEEEEEEEC
Confidence 9999999988888773
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.58 E-value=4e-14 Score=107.26 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=71.4
Q ss_pred ceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEe-cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 319 KIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
....+.+|+++.|.|.+.| .|+|.+.|+|||.++............ .+..+.++|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567889999999999999 899999999999999865443221111 12234568999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy670 397 LNANLTLNIE 406 (540)
Q Consensus 397 ~~~~~~l~V~ 406 (540)
.+.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999988875
No 18
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.56 E-value=8e-14 Score=105.63 Aligned_cols=95 Identities=25% Similarity=0.432 Sum_probs=79.7
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
|.|...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+.... ..+.|.|.++..+|+|.|+|.+.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~----~~s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTE----NSSKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecC----CeeEEEECCCChhhCEEEEEEEE
Confidence 34566677888899999999999999999999999999999766655443322 12479999999999999999999
Q ss_pred cCCCCeeeeEEEEEeeccC
Q psy670 288 NEFGESNANLNLNIEAEAE 306 (540)
Q Consensus 288 ~~~~~~~~~~~l~v~~~~~ 306 (540)
|..|....++.|.|...|.
T Consensus 77 N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 77 NKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred cCCCceeEEEEEEEecCCC
Confidence 9999999999999987653
No 19
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.55 E-value=2.2e-14 Score=102.15 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=60.7
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeeccc-CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM-SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~ 85 (540)
.++|.+.|.|. |.|.|+|+|..+.. +.++.+.....+ ..+|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 2 ~l~C~v~G~P~------P~i~W~k~~~~i~~~~~r~~~~~~~~g-----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05892 2 KLECQISAIPP------PKIFWKRNNEMVQYNTDRISLYQDNSG-----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCH 70 (75)
T ss_pred EEEEEEEecCC------CeEEEEECCEECcCCCCeEEEEEcCCC-----cEEEEECCCChhhCEEEEEEEEcCcCeEEEE
Confidence 36899999999 99999999999874 356665443333 3589999999999999999999999999888
Q ss_pred EEEEE
Q psy670 86 VNLNF 90 (540)
Q Consensus 86 ~~l~v 90 (540)
+.|.|
T Consensus 71 a~L~V 75 (75)
T cd05892 71 ARLDV 75 (75)
T ss_pred EEEeC
Confidence 88764
No 20
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.55 E-value=8.9e-14 Score=105.36 Aligned_cols=88 Identities=18% Similarity=0.279 Sum_probs=70.3
Q ss_pred CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+++.|.|.+.| .|.|.+.|+|+|.++...................+.|.|..+..+|+|.|+|.|.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 456789999999999999 8999999999999997554433222110122345689999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy670 190 NANIALNFQ 198 (540)
Q Consensus 190 ~~~~~l~v~ 198 (540)
+..+.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888875
No 21
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.55 E-value=1e-13 Score=104.36 Aligned_cols=85 Identities=26% Similarity=0.467 Sum_probs=71.0
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
|....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+....+ . ..+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~-~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQG-K--YASLTIKGVSSEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCC-C--EEEEEEccCChhhCEEEEEEEEECCCcc
Confidence 455678899999999999999999999999999998776655443322 1 2379999999999999999999999998
Q ss_pred EEEEEEEE
Q psy670 398 NANLTLNI 405 (540)
Q Consensus 398 ~~~~~l~V 405 (540)
..++.|.|
T Consensus 85 ~~~~~v~v 92 (92)
T cd05737 85 TVDVTVSV 92 (92)
T ss_pred eEEEEEeC
Confidence 88887764
No 22
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.54 E-value=1.2e-13 Score=103.92 Aligned_cols=89 Identities=26% Similarity=0.543 Sum_probs=75.0
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.++..|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++.... .+ ..++|.|.++..+|+|.|+|.|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~--~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS--TE--YKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE--cC--CeeEEEECCCCcccCEeEEEEE
Confidence 6777888888999999999999999999999999999999887665544332 11 2348999999999999999999
Q ss_pred EcCCeeeEEEEEE
Q psy670 391 KNFHGELNANLTL 403 (540)
Q Consensus 391 ~n~~g~~~~~~~l 403 (540)
+|..|....++.|
T Consensus 79 ~N~~G~~~~~~~l 91 (92)
T cd05747 79 ENSEGKQEAQFTL 91 (92)
T ss_pred EcCCCCEeEEEEe
Confidence 9999998887765
No 23
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.53 E-value=2.3e-13 Score=100.98 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=69.5
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
|+.++|.|.+.|.|++.+.|++++..+... .++.......+....++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 788999999999999999999999888654 3444433334555567999999999999999999999999999999999
Q ss_pred EEE
Q psy670 405 IEM 407 (540)
Q Consensus 405 V~~ 407 (540)
|..
T Consensus 81 V~~ 83 (88)
T cd05735 81 VQE 83 (88)
T ss_pred EeC
Confidence 987
No 24
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.53 E-value=1.1e-13 Score=98.54 Aligned_cols=74 Identities=30% Similarity=0.513 Sum_probs=60.0
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|.|.|++++..+... .++.+. .++. ...+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~--~~~~-g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLY--QDNS-GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEE--EcCC-CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 479999999999999999999998753 333332 2221 1237999999999999999999999999999888875
No 25
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.52 E-value=2.2e-13 Score=102.69 Aligned_cols=90 Identities=31% Similarity=0.622 Sum_probs=78.7
Q ss_pred CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 391 (540)
|.|...+....+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.+....... ..++|.|.++..+|+|.|+|.|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVAS 76 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEEE
Confidence 45666778889999999999999999999999999999999987777665433 23489999999999999999999
Q ss_pred cCCeeeEEEEEEEE
Q psy670 392 NFHGELNANLTLNI 405 (540)
Q Consensus 392 n~~g~~~~~~~l~V 405 (540)
|..|....++.|.|
T Consensus 77 n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 77 NSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEC
Confidence 99999999988876
No 26
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.52 E-value=2.5e-13 Score=100.22 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=67.5
Q ss_pred eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC-ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
.+.+..|+.+.|.|.+.|.|.|.+.|++++.++.... ++.. ..... .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~--~~~~~--~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRV--ESYKD--LSSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEE--EEcCC--eEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 3567789999999999999999999999999997543 3332 22221 33899999999999999999999999998
Q ss_pred EEEEEEE
Q psy670 399 ANLTLNI 405 (540)
Q Consensus 399 ~~~~l~V 405 (540)
.++.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 8888765
No 27
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.51 E-value=8.5e-14 Score=99.35 Aligned_cols=75 Identities=24% Similarity=0.477 Sum_probs=59.4
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.|+|. |+|+|||||++|..+.++.......+ ...+.++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 3 i~~~v~G~P~------Pti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~ 75 (79)
T cd05855 3 IPFTVKGNPK------PTLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVS 75 (79)
T ss_pred EEEEEeEeCC------CceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEE
Confidence 5689999999 99999999999987776544322211 1123578999999999999999999999998877766
Q ss_pred EE
Q psy670 88 LN 89 (540)
Q Consensus 88 l~ 89 (540)
+.
T Consensus 76 ~~ 77 (79)
T cd05855 76 AH 77 (79)
T ss_pred ee
Confidence 54
No 28
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.50 E-value=2.8e-13 Score=102.83 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=70.4
Q ss_pred eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEE--ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT--LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
...+..|+.+.|.|.+.|+|+|.+.|+|+|.++..+........ .....+.++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 45677899999999999999999999999999986554322111 0122334589999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy670 398 NANLTLNIE 406 (540)
Q Consensus 398 ~~~~~l~V~ 406 (540)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999888875
No 29
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.50 E-value=6e-13 Score=98.74 Aligned_cols=83 Identities=27% Similarity=0.408 Sum_probs=68.0
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
|+.++|.|.+.|.|.+.+.|+|++..+... .++.+.... ......++|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 789999999999999999999999888543 344333221 223445689999999999999999999999999999999
Q ss_pred EEecC
Q psy670 196 NFQGG 200 (540)
Q Consensus 196 ~v~~~ 200 (540)
.|.+.
T Consensus 80 ~V~~~ 84 (88)
T cd05735 80 TVQEP 84 (88)
T ss_pred EEeCC
Confidence 99863
No 30
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=1.8e-13 Score=97.22 Aligned_cols=73 Identities=36% Similarity=0.599 Sum_probs=62.8
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 196 (540)
|+.+.|.|.+.|.|.+++.|+|++..+..+.++.+... .+|.|.+++.+|+|.|+|.|.|..|.......|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~--------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD--------GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC--------CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 78899999999999999999999998876666655321 1799999999999999999999999988888776
Q ss_pred E
Q psy670 197 F 197 (540)
Q Consensus 197 v 197 (540)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
No 31
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.49 E-value=3.9e-13 Score=100.70 Aligned_cols=85 Identities=18% Similarity=0.346 Sum_probs=68.5
Q ss_pred CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
.+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+......... ......+|.|.++..+|.|.|+|.|.|..|.
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~ 81 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE----TTVDIYNLQLSNITSETQTTVTCTAENPVGQ 81 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE----ecCCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence 345556889999999999999999999999999988654432111 1112338999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy670 397 LNANLTLNI 405 (540)
Q Consensus 397 ~~~~~~l~V 405 (540)
...++.|.|
T Consensus 82 ~~~~~~L~v 90 (90)
T cd04972 82 ANVSVQVTV 90 (90)
T ss_pred eeEEEEEeC
Confidence 998888764
No 32
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.49 E-value=2e-13 Score=94.32 Aligned_cols=66 Identities=27% Similarity=0.481 Sum_probs=56.4
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+.|.|.+.|.|.|.+.|+|+|..+.... .+ ..|.|.++..+|+|.|+|.|+|..|...++++|.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~----~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------SQ----HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC--------Cc----CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4789999999999999999999886321 11 289999999999999999999999988888877764
No 33
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.49 E-value=1.4e-13 Score=98.32 Aligned_cols=73 Identities=29% Similarity=0.294 Sum_probs=60.0
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeeccc-CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM-SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~ 85 (540)
.++|.+.|.|. |.+.|+|++..+.. +.++++....++ ..+|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 2 ~l~C~v~G~P~------P~v~W~k~~~~l~~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05893 2 RLECRVSGVPH------PQIFWKKENESLTHNTDRVSMHQDNCG-----YICLLIQGATKEDAGWYTVSAKNEAGIVSCT 70 (75)
T ss_pred EEEEEEeEecC------CEEEEEECCEECCCCCCeEEEEEcCCC-----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 36899999999 99999999999865 345555433322 2479999999999999999999999999888
Q ss_pred EEEEE
Q psy670 86 VNLNF 90 (540)
Q Consensus 86 ~~l~v 90 (540)
+.|.|
T Consensus 71 a~L~V 75 (75)
T cd05893 71 ARLDV 75 (75)
T ss_pred EEEeC
Confidence 88764
No 34
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.49 E-value=1.8e-13 Score=98.20 Aligned_cols=74 Identities=24% Similarity=0.441 Sum_probs=62.4
Q ss_pred CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
+|+.+.|.|.+.|.|.|.+.|+|++..+....+..... . .+|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~-----~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS-----S---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc-----C---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 68999999999999999999999999886554433321 1 279999999999999999999999998888877
Q ss_pred EE
Q psy670 196 NF 197 (540)
Q Consensus 196 ~v 197 (540)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 64
No 35
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=6.2e-13 Score=96.01 Aligned_cols=74 Identities=31% Similarity=0.615 Sum_probs=61.5
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCce-EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI-SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
|+.+.|.|.+.|.|.|.++|+++|..+...... .... ... .|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSG----ALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCC----EEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 688999999999999999999999988654321 1211 122 799999999999999999999999998888887
Q ss_pred E
Q psy670 405 I 405 (540)
Q Consensus 405 V 405 (540)
|
T Consensus 75 V 75 (76)
T cd05867 75 V 75 (76)
T ss_pred E
Confidence 6
No 36
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.49 E-value=4.6e-13 Score=95.57 Aligned_cols=76 Identities=24% Similarity=0.484 Sum_probs=61.2
Q ss_pred EEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670 122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 122 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 197 (540)
|.|.+.|+|.|+++|+|+|.++..+.+..............+.|.|.++..+|+|.|+|.|+|..|.....+.+++
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence 6799999999999999999999876554333222223334568999999999999999999999999888877654
No 37
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.48 E-value=4.7e-13 Score=95.57 Aligned_cols=75 Identities=28% Similarity=0.490 Sum_probs=59.9
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|.|.|++++..+..... ++....++.. ..+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTD-RVSMHQDNCG-YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCC-eEEEEEcCCC-EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 47999999999999999999999875432 2222222221 236999999999999999999999999999988875
No 38
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.48 E-value=2.6e-13 Score=100.80 Aligned_cols=87 Identities=18% Similarity=0.340 Sum_probs=71.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....... . .+ ..|.|.+++.+|+|.|+|.|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~--~~----~~L~I~~v~~~D~G~Y~C~A 72 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--M--SG----AVLKIFNIQPEDEGTYECEA 72 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--c--CC----CEEEECcCChhhCEEEEEEE
Confidence 3556667777888899999999999999999999999998775443221 1 11 26999999999999999999
Q ss_pred EcCCCCeeeeEEEEE
Q psy670 287 KNEFGESNANLNLNI 301 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v 301 (540)
.|..|.....+.|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd05851 73 ENIKGKDKHQARVYV 87 (88)
T ss_pred EcCCCceEEEEEEEE
Confidence 999999888877766
No 39
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.48 E-value=8.5e-13 Score=100.22 Aligned_cols=83 Identities=22% Similarity=0.469 Sum_probs=68.4
Q ss_pred eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+..... .......+. .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEE-KYSFNEDGS----EMTILDVDKLDEAEYTCIAENKAGEQEA 86 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCC-EEEEeCCCC----EEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence 45678999999999999999999999999998866522 222222222 7999999999999999999999999999
Q ss_pred EEEEEEEE
Q psy670 400 NLTLNIEM 407 (540)
Q Consensus 400 ~~~l~V~~ 407 (540)
++.|.|..
T Consensus 87 ~~~L~V~~ 94 (95)
T cd05730 87 EIHLKVFA 94 (95)
T ss_pred EEEEEEEe
Confidence 99998864
No 40
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.48 E-value=2.3e-13 Score=97.89 Aligned_cols=71 Identities=34% Similarity=0.512 Sum_probs=61.5
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.|.|. |.+.|+|+|..+..+.++.+....+. ++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 4 l~c~~~G~P~------p~v~W~k~g~~l~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 4 LEVPISGRPT------PTVTWSKDGKPLKLSGRVQIETTASS------TSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred EEeeEeeeCC------CeEEEEECCEEcCCCCeEEEEECCCe------EEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 6899999999 99999999999977777776554333 79999999999999999999999999888877
Q ss_pred EEE
Q psy670 88 LNF 90 (540)
Q Consensus 88 l~v 90 (540)
|.|
T Consensus 72 l~V 74 (74)
T cd05748 72 VKV 74 (74)
T ss_pred EEC
Confidence 754
No 41
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.48 E-value=5.5e-13 Score=95.99 Aligned_cols=75 Identities=24% Similarity=0.485 Sum_probs=61.7
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
|+.+.|.|.+.|.|.|+|+|+++|.++......... ..++. .|.|.+++.+|+|.|+|.|+|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~-~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR-KVDGD----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE-EecCC----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999988643221111 12232 7899999999999999999999999999999987
No 42
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.48 E-value=2.7e-13 Score=97.23 Aligned_cols=73 Identities=26% Similarity=0.265 Sum_probs=59.6
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeeccc-CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM-SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~ 85 (540)
-++|.+.|.|. |.+.|+|+|..+.. ..++.+.....+ ..+|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 2 ~L~C~v~G~P~------P~v~W~k~~~~i~~~~~r~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 70 (75)
T cd05744 2 RLECRVSAIPP------PQIFWKKNNEMLTYNTDRISLYQDNCG-----RICLLIQNANKEDAGWYTVSAVNEAGVVSCN 70 (75)
T ss_pred EEEEEEeecCC------CeEEEEECCEECCCCCCcEEEEEcCCC-----eEEEEECCCCcccCEEEEEEEEcCCCcEEEE
Confidence 36899999999 99999999999874 345554433222 2479999999999999999999999998888
Q ss_pred EEEEE
Q psy670 86 VNLNF 90 (540)
Q Consensus 86 ~~l~v 90 (540)
+.|.|
T Consensus 71 ~~l~v 75 (75)
T cd05744 71 ARLDV 75 (75)
T ss_pred EEEeC
Confidence 87764
No 43
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2.9e-13 Score=97.14 Aligned_cols=74 Identities=24% Similarity=0.445 Sum_probs=62.8
Q ss_pred CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
+|+.+.|.|.+.|.|.|.+.|+++|..+....+... . ... +|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~--~-~~~----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV--L-SSG----TLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE--c-cCC----eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 589999999999999999999999998876544322 1 122 799999999999999999999999999888886
Q ss_pred E
Q psy670 405 I 405 (540)
Q Consensus 405 V 405 (540)
|
T Consensus 74 V 74 (74)
T cd05745 74 V 74 (74)
T ss_pred C
Confidence 5
No 44
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=9.9e-13 Score=98.18 Aligned_cols=86 Identities=24% Similarity=0.470 Sum_probs=70.4
Q ss_pred CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 391 (540)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... ..+. .|.|.+++.+|+|.|+|.|.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~----~L~i~~v~~~D~G~Y~C~a~ 73 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGA----VLKIPNIQFEDEGTYECEAE 73 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCC----EEEECCCCcccCEEEEEEEE
Confidence 345556677778899999999999999999999999887665443321 1222 89999999999999999999
Q ss_pred cCCeeeEEEEEEEE
Q psy670 392 NFHGELNANLTLNI 405 (540)
Q Consensus 392 n~~g~~~~~~~l~V 405 (540)
|..|....+..|.|
T Consensus 74 N~~G~~~~~~~l~V 87 (88)
T cd04968 74 NIKGKDTHQGRIYV 87 (88)
T ss_pred ECCCcEEEEEEEEE
Confidence 99999988888876
No 45
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.47 E-value=9e-13 Score=100.25 Aligned_cols=93 Identities=17% Similarity=0.332 Sum_probs=70.4
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
.|.|...+.......|+.+.|.|.+.|.|.|.++|++++..+..... ...... .....+.|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~--~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR--SHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE--cCccEEEEEEecCccCcCEEEE
Confidence 45565555555566689999999999999999999999877654321 111111 1122348999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEE
Q psy670 388 CNIKNFHGELNANLTLNI 405 (540)
Q Consensus 388 C~a~n~~g~~~~~~~l~V 405 (540)
|.|.|..|....++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999999888865
No 46
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.47 E-value=7.8e-13 Score=108.16 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=87.9
Q ss_pred EEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeee
Q psy670 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTL 451 (540)
Q Consensus 372 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (540)
+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-------------------------------------------- 37 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE-------------------------------------------- 37 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec--------------------------------------------
Confidence 699999999999999999999888888889998887
Q ss_pred eeeceeecCCcEEEecCCCeEEEEEEEeee-cC-CceEEEecCeecC-----CCCeEEEEEEecCCeEEEEEEeeeeeee
Q psy670 452 SVVPVIREVPKVVTISKKKTVVIECKVMSM-YE-PSVTWMKEKNTVK-----EDNKHVVHIEQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 452 ~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~-p~-~~v~W~~~~~~l~-----~~~~~~~~~~~~~~g~y~c~~~~~~~~~ 524 (540)
+|.+...+.......|+.++|.|.+.|. |+ ++|+|+++|.... .............+|+|+....+.-...
T Consensus 38 --~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~ 115 (139)
T cd05771 38 --PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPG 115 (139)
T ss_pred --CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCC
Confidence 7777665555555578999999999996 44 3899999986522 2222223445567888887777666666
Q ss_pred eCCeeEEEEEe
Q psy670 525 RGPSIKIIYYI 535 (540)
Q Consensus 525 ~~~~~~~~~~~ 535 (540)
+++.++.+.|.
T Consensus 116 ~~~~g~~ytC~ 126 (139)
T cd05771 116 TEDAGATYTCR 126 (139)
T ss_pred ccCCCCEEEEE
Confidence 55555555544
No 47
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.47 E-value=4.5e-13 Score=99.00 Aligned_cols=82 Identities=26% Similarity=0.506 Sum_probs=69.5
Q ss_pred eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
..|....+..|+.+.|.|.+.|.|.|.+.|+++|..+....+... .++ .|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~----~~~----~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV----EAG----DLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE----eCC----EEEEeeCCHHHCEEEEEEEECCCC
Confidence 345667788999999999999999999999999999876554332 122 799999999999999999999999
Q ss_pred eeEEEEEEEE
Q psy670 396 ELNANLTLNI 405 (540)
Q Consensus 396 ~~~~~~~l~V 405 (540)
....++.|.|
T Consensus 76 ~~~~~~~l~V 85 (85)
T cd05728 76 TIYASAELAV 85 (85)
T ss_pred eEEEEEEEEC
Confidence 9988888765
No 48
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.47 E-value=8.1e-13 Score=97.47 Aligned_cols=82 Identities=23% Similarity=0.526 Sum_probs=67.5
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .++.+... ...+.|.|.++..+|+|.|+|.+.|..|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY-----KDLSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc-----CCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 456789999999999999999999999999988653 34433321 123489999999999999999999999998
Q ss_pred EEEEEEEE
Q psy670 190 NANIALNF 197 (540)
Q Consensus 190 ~~~~~l~v 197 (540)
...+.|.|
T Consensus 79 ~~~~~l~V 86 (86)
T cd05894 79 HASLFVKV 86 (86)
T ss_pred EEEEEEEC
Confidence 88887764
No 49
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=4.8e-13 Score=95.02 Aligned_cols=73 Identities=36% Similarity=0.555 Sum_probs=62.5
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
|+.+.|.|.+.|.|.|.|.|++++..+....++.+ ..++ +|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~--~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISI--WDDG-----SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEE--cCCC-----EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999999999999999999998866555433 2222 7999999999999999999999999999888865
No 50
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.46 E-value=1.1e-12 Score=98.43 Aligned_cols=85 Identities=27% Similarity=0.566 Sum_probs=70.5
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
|....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++...... +. ..+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-GK--YASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-CC--EEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 44567889999999999999999999999999988776655443322 22 2479999999999999999999999999
Q ss_pred EEEEEEEE
Q psy670 398 NANLTLNI 405 (540)
Q Consensus 398 ~~~~~l~V 405 (540)
..++.|.|
T Consensus 85 ~~~~~v~~ 92 (92)
T cd05891 85 TVDVTVSV 92 (92)
T ss_pred eeEEEEEC
Confidence 98888765
No 51
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.46 E-value=7.1e-13 Score=99.69 Aligned_cols=83 Identities=16% Similarity=0.375 Sum_probs=68.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+++.|.|.+.|.|.|.+.|+|++..+....+..+.... ....+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQ----GKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcC----CCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 456889999999999999999999999999998766665543221 1124799999999999999999999999988
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8877754
No 52
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.46 E-value=1.1e-12 Score=98.52 Aligned_cols=86 Identities=27% Similarity=0.546 Sum_probs=65.4
Q ss_pred CceEEeeCCCeEEEEEEEEccCC-CeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPM-PEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH- 394 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~- 394 (540)
|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+..... +...... ....++|.|.++..+|+|.|+|.|+|..
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~-r~~v~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQ-RISVVRN-DDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCC-eEEEEeC-CCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 44556888999999999999995 7999998 7766655332 2222111 1123489999999999999999999996
Q ss_pred eeeEEEEEEEE
Q psy670 395 GELNANLTLNI 405 (540)
Q Consensus 395 g~~~~~~~l~V 405 (540)
|...+++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 88888888876
No 53
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.46 E-value=6.4e-13 Score=100.89 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=69.9
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEE-eecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSK-KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+..|+.+.|.|.+.|+|.|.+.|+|+|.++..+.+..... .........++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 4567789999999999999999999999999987654432221 111122344689999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy670 190 NANIALNFQ 198 (540)
Q Consensus 190 ~~~~~l~v~ 198 (540)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888775
No 54
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.46 E-value=1.5e-12 Score=100.35 Aligned_cols=95 Identities=27% Similarity=0.565 Sum_probs=69.9
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC---CceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT---DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+... .........++......+....++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 466777788888999999999999999999999999999988652 11111122233322223333445789999999
Q ss_pred EEEEcCCee-eEEEEEEEE
Q psy670 388 CNIKNFHGE-LNANLTLNI 405 (540)
Q Consensus 388 C~a~n~~g~-~~~~~~l~V 405 (540)
|.|.|..|. .++.+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 677777766
No 55
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.46 E-value=1.9e-13 Score=94.38 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=53.8
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.|.|. |.++|||||.+|.... . .+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 3 l~c~v~g~P~------P~v~W~kdg~~l~~~~--------~------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~ 62 (67)
T cd05863 3 LPVKVAAYPP------PEFQWYKDGKLISGKH--------S------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS 62 (67)
T ss_pred EEEEEEEeCC------CEEEEEECCEECcccC--------C------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence 5799999999 9999999999996321 1 148999999999999999999999998777777
Q ss_pred EEE
Q psy670 88 LNF 90 (540)
Q Consensus 88 l~v 90 (540)
+.+
T Consensus 63 ~~l 65 (67)
T cd05863 63 LEL 65 (67)
T ss_pred EEE
Confidence 665
No 56
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.46 E-value=8e-13 Score=95.04 Aligned_cols=73 Identities=27% Similarity=0.575 Sum_probs=61.0
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|.+.|+++|..+....+...... . ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~--~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT--A--SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEEC--C--CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 68999999999999999999999866655443322 1 1348999999999999999999999999988888765
No 57
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.44 E-value=6.4e-13 Score=96.37 Aligned_cols=76 Identities=24% Similarity=0.500 Sum_probs=59.1
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCc-cceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQ-SRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
+.|.+.|.|. |+|+|||||.+|..+.+......... ......+.|+|.+++.+|+|.|+|.|.|..|..+.++
T Consensus 3 i~~~v~G~P~------P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 76 (81)
T cd04971 3 IPFTVRGNPK------PTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI 76 (81)
T ss_pred EEEEeEeeCC------CcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence 4799999999 99999999999987765443322110 0112346899999999999999999999999988877
Q ss_pred EEE
Q psy670 87 NLN 89 (540)
Q Consensus 87 ~l~ 89 (540)
.|.
T Consensus 77 ~~~ 79 (81)
T cd04971 77 SAH 79 (81)
T ss_pred Eee
Confidence 664
No 58
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.44 E-value=1.4e-12 Score=93.58 Aligned_cols=74 Identities=34% Similarity=0.534 Sum_probs=59.2
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|.+.|++++..+... .++.. ...+. ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~--~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISL--YQDNC-GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEE--EEcCC-CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998753 33322 22211 1237999999999999999999999999998888765
No 59
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.44 E-value=2.2e-12 Score=95.75 Aligned_cols=81 Identities=27% Similarity=0.559 Sum_probs=65.7
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceE-EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS-WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
..+.+|+.+.|.|.+.|.|.|.+.|+++|..+....... ..... . ...|.|.++..+|+|.|+|.|.|..|....
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~---~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN-Q---HWSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC-C---ceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 346789999999999999999999999999987654421 11111 1 227999999999999999999999999999
Q ss_pred EEEEEE
Q psy670 400 NLTLNI 405 (540)
Q Consensus 400 ~~~l~V 405 (540)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 888875
No 60
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.43 E-value=1.9e-12 Score=93.84 Aligned_cols=75 Identities=27% Similarity=0.530 Sum_probs=62.3
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
|+.+.|.|.+.|.|.|.|.|+++|..+........ ....+. .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~-~~~~~~----~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR-RRVDGG----TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcce-EEccCC----EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 68899999999999999999999998876543211 111222 7999999999999999999999999999988877
No 61
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.43 E-value=2.6e-12 Score=96.71 Aligned_cols=89 Identities=26% Similarity=0.541 Sum_probs=74.3
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.++|.+.+.|+++|..+....++.+.... ..+.|.|.++..+|+|.|+|.+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTE----YKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcC----CeeEEEECCCCcccCEeEEEEE
Confidence 677888888899999999999999999999999999999988766555443221 1258999999999999999999
Q ss_pred EcCCCCeeeeEEE
Q psy670 287 KNEFGESNANLNL 299 (540)
Q Consensus 287 ~~~~~~~~~~~~l 299 (540)
.|..|....++.|
T Consensus 79 ~N~~G~~~~~~~l 91 (92)
T cd05747 79 ENSEGKQEAQFTL 91 (92)
T ss_pred EcCCCCEeEEEEe
Confidence 9999987776654
No 62
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.43 E-value=2.8e-12 Score=104.93 Aligned_cols=121 Identities=15% Similarity=0.291 Sum_probs=85.2
Q ss_pred EEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC-Cce
Q psy670 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM-PDI 134 (540)
Q Consensus 57 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~-~~v 134 (540)
+|+|.+++.+|+|.|.|.+.+..+.....+.|.|..+| .+.+. .......+|+.+.|.|.+.|. |. ..|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P-~v~~~--------~~~~~~~~~~~~~L~C~a~g~~P~~~~i 72 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPP-RVRLS--------LEKLVSMIEEPQTLICHIAGYYPLDVQV 72 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCC-ceEEe--------CCCceeecCCcEEEEEEECCCCCCCeEE
Confidence 69999999999999999999988888888888887654 22222 112223378889999999885 54 489
Q ss_pred EEEeCCEeecC----CCceE---EEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 135 IWYQGTKVIED----TGRIK---MSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 135 ~W~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
.|+++|..... ..... ...+..+.....+.|.|.....++.+.|+|.+.+..
T Consensus 73 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 73 EWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 99998754221 01111 122233444555688998777778889999998754
No 63
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.43 E-value=2e-12 Score=91.76 Aligned_cols=71 Identities=31% Similarity=0.556 Sum_probs=59.3
Q ss_pred eEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 328 ~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
++.|.|.+.|.|.|.++|+++|..+.....+.. ..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~--~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKI--VKEH-----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEE--EecC-----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999998876555432 2222 5778899999999999999999999999888865
No 64
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.43 E-value=2.7e-12 Score=97.80 Aligned_cols=92 Identities=22% Similarity=0.428 Sum_probs=69.7
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .+... ......+.|.|.+++.+|+|.|+
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVV--RGHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEE--eCCccEEEEEECcCCcCcCEEeE
Confidence 44454 34456788999999999999999999999999866654321 11111 12223458999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEE
Q psy670 388 CNIKNFHGELNANLTLNI 405 (540)
Q Consensus 388 C~a~n~~g~~~~~~~l~V 405 (540)
|.|.|..|....++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999988887764
No 65
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.42 E-value=2e-12 Score=91.77 Aligned_cols=71 Identities=25% Similarity=0.521 Sum_probs=59.4
Q ss_pred eEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670 119 LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 119 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 197 (540)
++.|.|.+.|.|.|.+.|+|++..+....+..+.... .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC--------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999988766555443221 5888899999999999999999999888887764
No 66
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.42 E-value=2.7e-12 Score=93.12 Aligned_cols=75 Identities=23% Similarity=0.492 Sum_probs=60.0
Q ss_pred EEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec---CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK---GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 330 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
.|.|.+.|.|.|.|+|+++|..+............. .......|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 368999999999999999999998766433332221 223345899999999999999999999999998887764
No 67
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.42 E-value=1.7e-12 Score=95.88 Aligned_cols=78 Identities=27% Similarity=0.413 Sum_probs=66.5
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+..|+.+.|.|.+.|.|.+.+.|+|++..+....+..... ..|.|.++..+|+|.|+|.+.|..|...
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~---------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA---------GDLRITKLSLSDSGMYQCVAENKHGTIY 78 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC---------CEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence 4567899999999999999999999999999987665544321 1799999999999999999999999988
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 79 ~~~~l~V 85 (85)
T cd05728 79 ASAELAV 85 (85)
T ss_pred EEEEEEC
Confidence 8877764
No 68
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.42 E-value=3.3e-12 Score=97.39 Aligned_cols=92 Identities=25% Similarity=0.456 Sum_probs=68.3
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEccCCC---ceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQQTD---RISWNVTLKGDKYHIRLEVKDPRKEDTGL 385 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 385 (540)
+|.+.. +....+.+|+.+.|.|.+.|.|.|.|.|++. +..+.... ..++...... ...+|.|.+++.+|+|.
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~--~~~~L~I~~v~~~D~G~ 78 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH--GESSLHIKDVKLSDSGR 78 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC--CeeEEEEeeCCcCCCEE
Confidence 455554 5567888999999999999999999999994 44443211 1122222111 12379999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEE
Q psy670 386 YKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 386 Y~C~a~n~~g~~~~~~~l~V 405 (540)
|+|.|.|..|....++.|.|
T Consensus 79 Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 79 YDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEeccCCcceeEEEEeC
Confidence 99999999999888888764
No 69
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.42 E-value=3.9e-12 Score=98.51 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=67.0
Q ss_pred CCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCC-CCCCeeEEEEEEcCCeeeEEEEE
Q psy670 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
.|..+.|.|.+.|.|.+.+.|+++|..+... .++.......+....+.|.|.++. .+|.|.|+|.|.|..|....++.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 5689999999999999999999999998643 333333223333344689999987 58999999999999999999999
Q ss_pred EEEEE
Q psy670 403 LNIEM 407 (540)
Q Consensus 403 l~V~~ 407 (540)
|.|..
T Consensus 102 L~~~~ 106 (109)
T cd05773 102 LVSTS 106 (109)
T ss_pred EEecC
Confidence 98876
No 70
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=1.8e-12 Score=92.85 Aligned_cols=73 Identities=37% Similarity=0.623 Sum_probs=62.3
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 196 (540)
|+.+.|.|.+.|.|.+.+.|++++..+....+...... .+|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD--------GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC--------CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 78899999999999999999999998876665544321 1799999999999999999999999988888776
Q ss_pred E
Q psy670 197 F 197 (540)
Q Consensus 197 v 197 (540)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 4
No 71
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.41 E-value=1.6e-12 Score=95.62 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=60.9
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccC---CceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMS---DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS 83 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~ 83 (540)
.++|.+.|.|. |.+.+.|+|||+++... .++....... ..++|+|.+++.+|+|.|+|.|.|..|..+
T Consensus 4 ~L~C~a~g~P~----p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~ 74 (85)
T cd05854 4 TLQCHASHDPT----MDLTFTWSLDDFPIDLDKPNGHYRRMEVKE-----TIGDLVIVNAQLSHAGTYTCTAQTVVDSAS 74 (85)
T ss_pred EEEEEEecCCC----CCeEEEEEECCeEccccCCCCcEEEEEecc-----eEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence 47899999998 33478999999988643 2332221111 126899999999999999999999999999
Q ss_pred eeEEEEEeec
Q psy670 84 STVNLNFSEE 93 (540)
Q Consensus 84 ~~~~l~v~~~ 93 (540)
+++.|.|..+
T Consensus 75 ~~~~L~V~~~ 84 (85)
T cd05854 75 ASATLVVRGP 84 (85)
T ss_pred EEEEEEEECC
Confidence 9999998764
No 72
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.41 E-value=3.8e-12 Score=91.87 Aligned_cols=74 Identities=26% Similarity=0.407 Sum_probs=60.4
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCce-EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI-KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
|+++.|.|.+.|.|.|.+.|+++|..+...... .... . ...|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~----~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV----S---SGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe----e---CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 789999999999999999999999988643211 1111 0 1279999999999999999999999998888887
Q ss_pred EE
Q psy670 196 NF 197 (540)
Q Consensus 196 ~v 197 (540)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 76
No 73
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.41 E-value=5.2e-12 Score=95.02 Aligned_cols=81 Identities=25% Similarity=0.622 Sum_probs=61.2
Q ss_pred CeEEeCCceEEee---CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670 312 PTFIEKPKIRSEQ---GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK 387 (540)
Q Consensus 312 p~~~~~~~~~~~~---~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~ 387 (540)
|.|+..|....+. +|+.+.|.|.+.|.|.|.|.|+++|..+........... ++ .|.|.++. .+|+|.|+
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g-----~L~i~~~~~~~D~G~Y~ 75 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-DG-----NLIISNPSEVKDSGRYQ 75 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-CC-----eEEEccCCccCcCEEEE
Confidence 4455555554443 478999999999999999999999999865443333222 22 68888874 68999999
Q ss_pred EEEEcCCeeeE
Q psy670 388 CNIKNFHGELN 398 (540)
Q Consensus 388 C~a~n~~g~~~ 398 (540)
|.|.|..|...
T Consensus 76 C~A~N~~G~~~ 86 (94)
T cd05848 76 CLATNSIGSIL 86 (94)
T ss_pred EEEEcCCCeEE
Confidence 99999999774
No 74
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.41 E-value=2.6e-12 Score=96.78 Aligned_cols=90 Identities=29% Similarity=0.589 Sum_probs=77.5
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+..+.... ....|.|.++..+|+|.|+|.+.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVAS 76 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEEE
Confidence 45666677888999999999999999999999999999999987777766554 34589999999999999999999
Q ss_pred cCCCCeeeeEEEEE
Q psy670 288 NEFGESNANLNLNI 301 (540)
Q Consensus 288 ~~~~~~~~~~~l~v 301 (540)
|..|.....+.|.|
T Consensus 77 n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 77 NSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEC
Confidence 99888888777765
No 75
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.41 E-value=4.4e-12 Score=93.31 Aligned_cols=78 Identities=14% Similarity=0.290 Sum_probs=61.3
Q ss_pred CeEEEEEEEEccCCC--eEEEEECCEEccCCC---ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 327 KLVVMECKVKAKPMP--EIVWFHEGKELQQTD---RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 327 ~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
+.++|.|.+.|.|.| .+.|+++|..+.... ++.. .... ....+|.|.+++.+|+|.|+|.|.|..|...+++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRR-MEVK--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEE-EEec--ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 468999999999987 589999999885432 2211 1111 1123899999999999999999999999999999
Q ss_pred EEEEEE
Q psy670 402 TLNIEM 407 (540)
Q Consensus 402 ~l~V~~ 407 (540)
.|.|..
T Consensus 78 ~L~V~~ 83 (85)
T cd05854 78 TLVVRG 83 (85)
T ss_pred EEEEEC
Confidence 999986
No 76
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=3.6e-12 Score=91.74 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=61.0
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 196 (540)
|+.++|.|.+.|.|.|+|.|+|+|.++........... .. ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~---~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV---DG---DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe---cC---CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 68899999999999999999999998854322111110 11 1689999999999999999999999999999888
Q ss_pred Ee
Q psy670 197 FQ 198 (540)
Q Consensus 197 v~ 198 (540)
|.
T Consensus 75 v~ 76 (76)
T cd05868 75 VL 76 (76)
T ss_pred eC
Confidence 73
No 77
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.40 E-value=2.7e-12 Score=93.15 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=61.6
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
|+++.|.|.+.|.|.|.+.|++++..+....++... ..++ ...|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSIT--SEGG--YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEE--ECCC--EEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 688999999999999999999999888766554332 2222 238999999999999999999999998876665544
No 78
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.40 E-value=3.6e-12 Score=95.77 Aligned_cols=82 Identities=27% Similarity=0.484 Sum_probs=63.6
Q ss_pred ccccCCCeEEEEEEEeecCC-CceEEEe-CCEeecC-CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-c
Q psy670 112 TIHQDGDLLVMECVLEASPM-PDIIWYQ-GTKVIED-TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-G 187 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~ 187 (540)
..+.+|++++|.|.+.|.|. +.+.|++ ++..+.. ..++.+.. .+...++|.|.+++.+|+|.|+|.|.|.. |
T Consensus 10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~----~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR----NDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe----CCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 45788999999999999995 6999998 7766654 33333321 12224589999999999999999999996 7
Q ss_pred eeEEEEEEEE
Q psy670 188 ESNANIALNF 197 (540)
Q Consensus 188 ~~~~~~~l~v 197 (540)
....++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 7888887765
No 79
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.40 E-value=1.9e-12 Score=91.71 Aligned_cols=70 Identities=36% Similarity=0.619 Sum_probs=58.6
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+.|.|.+.|.|.|.+.|+++|..+....... ..+. +|.|.++..+|+|.|+|.|.|..|....++++.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~----~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGH----SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCC----EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999999999999999999987663321 2222 79999999999999999999999988888877764
No 80
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=1.6e-12 Score=91.08 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=56.9
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+.|.|.+.|.|.|.+.|+++|.++...... ..+. .|.|.++..+|+|.|+|.|.|..|....+.++.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~-----~~~~----~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF-----KRGV----HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE-----ccCC----EEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 368999999999999999999999764322 1121 79999999999999999999999988777776654
No 81
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.39 E-value=2e-12 Score=91.56 Aligned_cols=70 Identities=27% Similarity=0.486 Sum_probs=57.8
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 198 (540)
+.|.|.+.|.|.|.+.|+|+|..+....+.... ..+|.|.++..+|+|.|+|.+.|..|.....+.++|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKS---------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcC---------CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 479999999999999999999998765432211 1289999999999999999999999988777777653
No 82
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.39 E-value=5.7e-12 Score=93.66 Aligned_cols=83 Identities=23% Similarity=0.504 Sum_probs=64.6
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+....+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++.. ..++. ..+|.|.++..+|+|.|+|.|+|..|.
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~--~~~g~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVV--QKEGV--RSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEE--EeCCC--eeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 45567889999999999999998 899998 4666665555433 22332 238999999999999999999999987
Q ss_pred e-EEEEEEEE
Q psy670 397 L-NANLTLNI 405 (540)
Q Consensus 397 ~-~~~~~l~V 405 (540)
. .+++.|.|
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 5 66666654
No 83
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=1.1e-11 Score=93.38 Aligned_cols=86 Identities=24% Similarity=0.490 Sum_probs=62.9
Q ss_pred CeEEeCCceEEeeCC---CeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670 312 PTFIEKPKIRSEQGG---KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK 387 (540)
Q Consensus 312 p~~~~~~~~~~~~~g---~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~ 387 (540)
|.+...|....+.+| +.+.|.|.+.|.|.|.++|+++|..+........... ++ .|.|.++. .+|+|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g----~L~I~~~~~~~D~G~Y~ 75 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AG----NLVINNPQKARDAGSYQ 75 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--CC----eEEEccCCccCcCEEEE
Confidence 455566666655444 6899999999999999999999999865433233222 22 68887754 58999999
Q ss_pred EEEEcCCeeeE-EEEEE
Q psy670 388 CNIKNFHGELN-ANLTL 403 (540)
Q Consensus 388 C~a~n~~g~~~-~~~~l 403 (540)
|.|+|..|... +.+.|
T Consensus 76 C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 76 CLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEcCcCcEEEEEEEE
Confidence 99999999764 34444
No 84
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.39 E-value=6.2e-12 Score=94.20 Aligned_cols=82 Identities=21% Similarity=0.460 Sum_probs=65.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+.......... ......|.|.++..+|.|.|+|.|.|..|...
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLET-----TVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEe-----cCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 3458899999999999999999999999998875443321111 11234899999999999999999999999988
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8887764
No 85
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.39 E-value=5.5e-12 Score=94.54 Aligned_cols=83 Identities=22% Similarity=0.461 Sum_probs=68.0
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
.+.+.+|+++.|.|.+.|.|.+.+.|++++..+....++...... .. ..+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~--~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ--GK--YASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC--CC--EEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 457889999999999999999999999999988766554443221 11 24799999999999999999999999988
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 8887764
No 86
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.39 E-value=3.6e-12 Score=91.21 Aligned_cols=73 Identities=37% Similarity=0.631 Sum_probs=62.4
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
|+.+.|.|.+.|.|.|.+.|++++..+....+... ...+ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI--WPDG-----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE--CCCC-----eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999999999999998876655432 1222 7999999999999999999999999998888865
No 87
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.39 E-value=1e-11 Score=94.61 Aligned_cols=92 Identities=23% Similarity=0.361 Sum_probs=69.9
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCC--ceEEEEEecCCeeEEEEEEcCCCCCC-CeeE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTD--RISWNVTLKGDKYHIRLEVKDPRKED-TGLY 386 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y 386 (540)
||.+ ..+....+.+|+.+.|.|.+.|.|.| .|.|++++..+.... ++.+..........++|.|.++..+| .|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 3444 34456678899999999999999999 699999999886543 34333222223445689999999855 8999
Q ss_pred EEEEEcCCeeeEEEEEE
Q psy670 387 KCNIKNFHGELNANLTL 403 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l 403 (540)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998877765
No 88
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.39 E-value=3.2e-12 Score=97.19 Aligned_cols=86 Identities=21% Similarity=0.426 Sum_probs=63.6
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA 191 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (540)
..+..|+.++|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 34556899999999999999999999998776433211000000011222358999999999999999999999999988
Q ss_pred EEEEEE
Q psy670 192 NIALNF 197 (540)
Q Consensus 192 ~~~l~v 197 (540)
.+.|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 887764
No 89
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.39 E-value=1.4e-12 Score=93.42 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=55.9
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce-eee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~ 85 (540)
.+.|.+.|.|. |.|+|+|++.++......++....+ ..|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 2 ~l~C~~~G~P~------p~v~W~k~~~~~~~~~~~~~~~~~~-------g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~ 68 (74)
T cd05738 2 TMLCAASGNPD------PEITWFKDFLPVDTTSNGRIKQLRS-------GALQIENSEESDQGKYECVATNSAGTRYSAP 68 (74)
T ss_pred EEEEEEeEecC------CEEEEEECCEECccCCCCCEEEcCC-------cEEEECCCChhhCEEEEEEEECCCCceEccc
Confidence 57899999999 9999999999887433233333333 379999999999999999999999874 456
Q ss_pred EEEEE
Q psy670 86 VNLNF 90 (540)
Q Consensus 86 ~~l~v 90 (540)
+.|.|
T Consensus 69 a~l~v 73 (74)
T cd05738 69 ANLYV 73 (74)
T ss_pred EEEEE
Confidence 66655
No 90
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.38 E-value=2.4e-12 Score=93.07 Aligned_cols=73 Identities=26% Similarity=0.311 Sum_probs=61.5
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.+.|.+.|.|. |.+.|+|++..+..+.+.++....++ ..|.|.+++.+|.|.|+|.+.|..|..+.++
T Consensus 2 ~L~C~v~g~P~------p~v~W~k~~~~l~~~~~~~~~~~~~~------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 69 (76)
T cd05736 2 SLRCHAEGIPL------PRLTWLKNGMDITPKLSKQLTLIANG------SELHISNVRYEDTGAYTCIAKNEAGVDEDIS 69 (76)
T ss_pred EeEeEeeecCC------CEEEEEECCEECCCCCCccEEEeCCC------CEEEECcCCcccCEEEEEEEEcCCCCcceEE
Confidence 57899999998 99999999999876554444444443 4799999999999999999999999999888
Q ss_pred EEEEe
Q psy670 87 NLNFS 91 (540)
Q Consensus 87 ~l~v~ 91 (540)
.|.|.
T Consensus 70 ~l~V~ 74 (76)
T cd05736 70 SLFVE 74 (76)
T ss_pred EEEEE
Confidence 88875
No 91
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.38 E-value=5.6e-12 Score=96.05 Aligned_cols=87 Identities=20% Similarity=0.440 Sum_probs=64.9
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+++.|.|.+.|.|.+.+.|++++..+...................+.|.|.+++.+|+|.|+|.+.|..|...
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 35678999999999999999999999999866643221100011111122345899999999999999999999999988
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 8877764
No 92
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.38 E-value=7.9e-12 Score=92.79 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=64.6
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (540)
.+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....+....... . ....|.|.++..+|+|.|+|.+.|..|.....
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~--~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR--N--QHWSLIMESVVPSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe--C--CceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence 4678999999999999999999999999988655432111110 1 12379999999999999999999999998888
Q ss_pred EEEEE
Q psy670 193 IALNF 197 (540)
Q Consensus 193 ~~l~v 197 (540)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 88764
No 93
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.37 E-value=9.6e-12 Score=94.41 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=66.8
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+..|+++.|.|.+.|.|.+.+.|+++|..+... .+..... . ...|.|.+++.+|+|.|+|.+.|..|...
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~----~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE----D---GSEMTILDVDKLDEAEYTCIAENKAGEQE 85 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC----C---CCEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence 45789999999999999999999999999988654 2222211 1 12799999999999999999999999998
Q ss_pred EEEEEEEec
Q psy670 191 ANIALNFQG 199 (540)
Q Consensus 191 ~~~~l~v~~ 199 (540)
..+.|.|..
T Consensus 86 ~~~~L~V~~ 94 (95)
T cd05730 86 AEIHLKVFA 94 (95)
T ss_pred EEEEEEEEe
Confidence 888888763
No 94
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.37 E-value=3e-12 Score=89.73 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=55.1
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 197 (540)
+.|.|.+.|+|.|.+.|+|+|.++....+.. . ...|.|.++..+|+|.|+|.+.|..|......++++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-------~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-------R---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-------c---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4689999999999999999999986543221 1 127999999999999999999999997766655554
No 95
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.37 E-value=4.3e-12 Score=90.07 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=57.6
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+.|.|.+.|.|.|.+.|++++..+..... . ....+. +|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~--~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-K--KLNNNK----TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-e--EEcCCC----EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 46899999999999999999887754322 1 111222 89999999999999999999999999988888773
No 96
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.37 E-value=1.2e-12 Score=92.36 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=56.5
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.|.|. |.++|+|+|.++..+.++.+. .+ ++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 3 L~C~~~g~P~------p~i~W~k~g~~~~~~~~~~~~--~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 3 IPCSAQGDPE------PTITWNKDGVQVTESGKFHIS--PE-------GYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred eEecceEeCC------CEEEEEECCEECCCCCCEEEC--CC-------CEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 6899999998 999999999998776666542 23 38999999999999999999999998877766
Q ss_pred E
Q psy670 88 L 88 (540)
Q Consensus 88 l 88 (540)
|
T Consensus 68 L 68 (69)
T cd05746 68 L 68 (69)
T ss_pred e
Confidence 5
No 97
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.37 E-value=7e-12 Score=90.56 Aligned_cols=73 Identities=30% Similarity=0.661 Sum_probs=56.5
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE--EEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN--ANLTLNIE 406 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~ 406 (540)
++|.|.+.|.|.|.+.|+++|.++..... ......... +|.|.++..+|+|.|+|.|.|..|... ..++|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~-~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQG-NYSVSSKER----TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCc-cEEEeCCCC----EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 47999999999999999999998865432 112222222 799999999999999999999999864 45555554
No 98
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.36 E-value=5.3e-12 Score=91.72 Aligned_cols=77 Identities=21% Similarity=0.465 Sum_probs=62.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+.+.|.|.+.+. .+.+.|+|+|.++....+..+.. ..|.|.+++.+|+|.|+|.+.|..|...
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~---------~~L~I~~~~~~DsG~Y~C~a~n~~g~~~ 72 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG---------EEVQIKDAVPRDSGLYACVTSSPSGSDT 72 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC---------CEEEECCCChhhCEEEEEEEeCCCCccc
Confidence 3467899999999999775 56899999999987665554431 1799999999999999999999988877
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|+|
T Consensus 73 ~~~~v~V 79 (79)
T cd04973 73 TYFSVNV 79 (79)
T ss_pred EEEEEeC
Confidence 7666654
No 99
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=3.6e-12 Score=92.05 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=54.1
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCC-ceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSD-RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~ 85 (540)
.+.|.+.|.|. |.++|+|+|.++..+. ++.+. ..+ .+|.|.+++.+|+|.|+|.|.|..|...++
T Consensus 2 ~L~C~~~g~P~------p~v~W~k~g~~l~~~~~~~~~~--~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 67 (77)
T cd05760 2 TLRCHIDGHPR------PTYQWFRDGTPLSDGQGNYSVS--SKE------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSS 67 (77)
T ss_pred EEEEEeeecCC------CcEEEEECCEECCCCCccEEEe--CCC------CEEEEeeCCcccCEEEEEEEEeCCCeEeeC
Confidence 36899999998 9999999999986543 33332 122 489999999999999999999999986544
Q ss_pred EEEEE
Q psy670 86 VNLNF 90 (540)
Q Consensus 86 ~~l~v 90 (540)
..++|
T Consensus 68 ~~~~l 72 (77)
T cd05760 68 QNFTL 72 (77)
T ss_pred ceEEE
Confidence 33333
No 100
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.36 E-value=5.9e-12 Score=91.46 Aligned_cols=78 Identities=24% Similarity=0.576 Sum_probs=63.8
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
....+.+|+.+.|.|.+.+. .+.+.|+++|.++....++.. .+. .|.|.+++.+|+|.|+|.|.|..|...
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~----~~~----~L~I~~~~~~DsG~Y~C~a~n~~g~~~ 72 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI----TGE----EVQIKDAVPRDSGLYACVTSSPSGSDT 72 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE----eCC----EEEECCCChhhCEEEEEEEeCCCCccc
Confidence 34567899999999999986 568999999999877655433 122 799999999999999999999998887
Q ss_pred EEEEEEE
Q psy670 399 ANLTLNI 405 (540)
Q Consensus 399 ~~~~l~V 405 (540)
..+.|+|
T Consensus 73 ~~~~v~V 79 (79)
T cd04973 73 TYFSVNV 79 (79)
T ss_pred EEEEEeC
Confidence 7777654
No 101
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.35 E-value=1.4e-11 Score=91.89 Aligned_cols=80 Identities=19% Similarity=0.404 Sum_probs=63.6
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
+..+.+.+|+.++|.|.+.|. .|.+.|++++..+.... . ....++. +|.|.+++.+|+|.|+|.|.|..|..
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~--~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-L--QLSNDNR----TLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-E--EEeCCCC----EEEECcCChhhCEEEEEEEEcCCCCE
Confidence 345678899999999999999 99999999999876432 2 2222222 79999999999999999999999975
Q ss_pred -EEEEEEEE
Q psy670 398 -NANLTLNI 405 (540)
Q Consensus 398 -~~~~~l~V 405 (540)
+..+.|.|
T Consensus 82 ~S~~~~L~V 90 (91)
T cd05740 82 TSDPYILNV 90 (91)
T ss_pred EeeeEEEEe
Confidence 45666665
No 102
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=1e-11 Score=90.02 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=61.1
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 196 (540)
|+.+.|.|.+.|.|.|.+.|+++|..+.......... ... ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~---~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRR---VDG---GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEE---ccC---CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 7889999999999999999999999886544321110 011 2799999999999999999999999998888887
Q ss_pred E
Q psy670 197 F 197 (540)
Q Consensus 197 v 197 (540)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 6
No 103
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.35 E-value=1e-11 Score=94.18 Aligned_cols=86 Identities=24% Similarity=0.455 Sum_probs=63.8
Q ss_pred EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCC-----CCCCCeeEEEE
Q psy670 315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-----RKEDTGLYKCN 389 (540)
Q Consensus 315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~ 389 (540)
...|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+............++ .|.|..+ ..+|.|.|+|.
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y~C~ 77 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-----SLLITSVVHSKHNKPDEGFYQCV 77 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-----eEEEeeeeccCCCCCcCEEEEEE
Confidence 3455666778899999999999999999999999998876543222222232 3455444 68899999999
Q ss_pred EEcC-Ceee-EEEEEEEE
Q psy670 390 IKNF-HGEL-NANLTLNI 405 (540)
Q Consensus 390 a~n~-~g~~-~~~~~l~V 405 (540)
|.|. .|.. ++.+.|.|
T Consensus 78 a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 78 AQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EECCccCcEEEeeeEEeC
Confidence 9999 8876 55666654
No 104
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.35 E-value=4.5e-12 Score=89.45 Aligned_cols=68 Identities=26% Similarity=0.564 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
|.|.|.+.|.|.|.+.|+|++..+....+..+... ..|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE--------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC--------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999999998876655544321 279999999999999999999999988777665
No 105
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.34 E-value=1.2e-11 Score=86.85 Aligned_cols=68 Identities=25% Similarity=0.493 Sum_probs=54.8
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
|+.+.|.|.+.|.|.|.|.|++++..+....... ... ..|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~----~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGR----NVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCc----cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999999999999999999886544321 111 168888874 7999999999999998877765
No 106
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.34 E-value=7.6e-12 Score=90.77 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=61.0
Q ss_pred CeEEEEEEEEcc--CCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 327 KLVVMECKVKAK--PMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 327 ~~v~l~C~~~~~--p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
+++.|.|.+.+. +++.+.|++||..+... ...++... ++......|.|.+++.+|+|.|+|.|.|..+..+.++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~-~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV-GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe-ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 468899999874 47789999999999632 11122221 111111279999999999999999999999999999999
Q ss_pred EEEE
Q psy670 404 NIEM 407 (540)
Q Consensus 404 ~V~~ 407 (540)
.|..
T Consensus 80 ~V~~ 83 (85)
T cd05853 80 IVRG 83 (85)
T ss_pred EEec
Confidence 9987
No 107
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=1.2e-11 Score=92.31 Aligned_cols=85 Identities=22% Similarity=0.402 Sum_probs=67.8
Q ss_pred eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 288 (540)
.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....... . ....|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~------~~~~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--M------SGAVLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--E------eCCEEEECCCCcccCEEEEEEEEE
Confidence 34445666778899999999999999999999999887654433221 1 113799999999999999999999
Q ss_pred CCCCeeeeEEEEE
Q psy670 289 EFGESNANLNLNI 301 (540)
Q Consensus 289 ~~~~~~~~~~l~v 301 (540)
..|....+..|.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd04968 75 IKGKDTHQGRIYV 87 (88)
T ss_pred CCCcEEEEEEEEE
Confidence 9999888777765
No 108
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.34 E-value=8.4e-12 Score=89.91 Aligned_cols=73 Identities=30% Similarity=0.561 Sum_probs=56.6
Q ss_pred EEEEEEEEccCCCeEEEEECCEEcc-CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQ-QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|.+.|+++|.... .....++.....+. .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3689999999999999999986432 22222222222222 7999999999999999999999999998888877
No 109
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.34 E-value=1.2e-11 Score=86.83 Aligned_cols=68 Identities=26% Similarity=0.524 Sum_probs=54.4
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
|++++|.|.+.|.|.|.|.|+|++..+....+.... ...|.|.++ .|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~---------~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVG---------RNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecC---------ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 688999999999999999999999887654432211 126888886 47999999999999987776665
No 110
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.34 E-value=1.4e-11 Score=89.12 Aligned_cols=75 Identities=25% Similarity=0.503 Sum_probs=61.8
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+.|.|.+.|.|.|.+.|++++..+.......+....++. .|.|.+++.+|.|.|+|.|.|..|....++.|.|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~----~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGS----ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCC----EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 368999999999999999999988765443333333332 799999999999999999999999999999998853
No 111
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.33 E-value=7.8e-12 Score=88.76 Aligned_cols=70 Identities=27% Similarity=0.512 Sum_probs=56.5
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 197 (540)
+.|.|.+.|.|.|.+.|+|++..+..... .... . ..+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~~----~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKLN----N---NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eEEc----C---CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47999999999999999999887654321 1111 1 128999999999999999999999999888888776
No 112
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.33 E-value=2.8e-11 Score=93.21 Aligned_cols=95 Identities=22% Similarity=0.466 Sum_probs=66.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc---CceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES---SKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 283 (540)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+... ..........+......+....++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 356777788888999999999999999999999999999988652 11111111122222222333345789999999
Q ss_pred EEEEcCCCC-eeeeEEEEE
Q psy670 284 CNVKNEFGE-SNANLNLNI 301 (540)
Q Consensus 284 C~~~~~~~~-~~~~~~l~v 301 (540)
|.+.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 555565554
No 113
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.33 E-value=7.2e-12 Score=95.49 Aligned_cols=83 Identities=24% Similarity=0.516 Sum_probs=62.9
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeC--CEeecC-----CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIED-----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
....+.+|++++|.|.+.|.|.|.+.|+|+ +..+.. ..++.... .....+|.|.+++.+|+|.|+|.|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-----~~~~~~L~I~~v~~~D~G~Y~C~A 83 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-----QHGESSLHIKDVKLSDSGRYDCEA 83 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee-----cCCeeEEEEeeCCcCCCEEEEEEE
Confidence 346788999999999999999999999994 443322 12222211 112248999999999999999999
Q ss_pred EcCCceeEEEEEEEE
Q psy670 183 CNSIGESNANIALNF 197 (540)
Q Consensus 183 ~~~~~~~~~~~~l~v 197 (540)
.|..|.....+.|.|
T Consensus 84 ~N~~G~~~~~~~l~~ 98 (98)
T cd05870 84 ASRIGGHQKSMYLDI 98 (98)
T ss_pred eccCCcceeEEEEeC
Confidence 999998888777754
No 114
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.33 E-value=4.3e-12 Score=92.04 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=60.0
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeeccc---CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM---SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS 83 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~ 83 (540)
.+.|.+.+.|- +.+.|.|+|||++|.. +.+|.+....+ ..+.|+|.+++.+|+|.|+|.|.|..+..+
T Consensus 4 ~l~C~v~~d~~----l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~-----~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~ 74 (85)
T cd05853 4 VLPCQVSHDHS----LDIVFTWSFNGHLIDFQKDGDHFERVGGQD-----SAGDLMIRSIQLKHAGKYVCMVQTSVDKLS 74 (85)
T ss_pred EEEEEeccCCC----CCcEEEEEECCEECcccCCCccEEEeccCC-----CCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence 47899987442 2289999999999963 23443321101 124899999999999999999999999999
Q ss_pred eeEEEEEeecC
Q psy670 84 STVNLNFSEED 94 (540)
Q Consensus 84 ~~~~l~v~~~~ 94 (540)
.++.|.|.++|
T Consensus 75 a~a~L~V~~pP 85 (85)
T cd05853 75 AAADLIVRGPP 85 (85)
T ss_pred EEEEEEEecCC
Confidence 99999998654
No 115
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=5e-12 Score=91.12 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=55.4
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeec-ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLL-KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~ 85 (540)
-+.|.+.|.|. |.++|+|+|... ......++....++ ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 2 ~l~C~~~G~P~------P~v~W~k~~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~ 69 (75)
T cd05763 2 RLECAATGHPT------PQIAWQKDGGTDFPAARERRMHVMPED------DVFFIVDVKIEDTGVYSCTAQNTAGSISAN 69 (75)
T ss_pred EeEeecccccC------CEEEEEeCCCccCCcccccceEEecCC------CEEEEeeCCcccCEEEEEEEEcCCCEEEee
Confidence 36899999999 999999998643 22222222222222 479999999999999999999999998888
Q ss_pred EEEEE
Q psy670 86 VNLNF 90 (540)
Q Consensus 86 ~~l~v 90 (540)
+.|.|
T Consensus 70 ~~l~V 74 (75)
T cd05763 70 ATLTV 74 (75)
T ss_pred EEEEE
Confidence 88776
No 116
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.33 E-value=1e-11 Score=88.97 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=56.3
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 405 (540)
++|.|.+.|.|.|.|.|++++..+......+.....++ .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 36899999999999999999998864322222222222 69999999999999999999999974 66777766
No 117
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.33 E-value=9.6e-12 Score=91.79 Aligned_cols=78 Identities=29% Similarity=0.597 Sum_probs=62.7
Q ss_pred EeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
....|+.+.|.|.+.+.|.|.+.|++++..+........ . ....+|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~----~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES----R--KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee----c--CceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 456799999999999999999999999987755433211 1 1123799999999999999999999999888887
Q ss_pred EEEE
Q psy670 402 TLNI 405 (540)
Q Consensus 402 ~l~V 405 (540)
.|.|
T Consensus 79 ~v~v 82 (82)
T cd05856 79 KVDV 82 (82)
T ss_pred EEeC
Confidence 7764
No 118
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.33 E-value=5.8e-12 Score=91.39 Aligned_cols=70 Identities=27% Similarity=0.211 Sum_probs=57.9
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
++|.+.|.|. |.++|++++..+....++.+..... .+.|+|.+++.+|+|.|+|.+.|..|.......
T Consensus 6 l~C~~~g~P~------p~v~W~~~~~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 6 FTCVATGVPT------PIINWRLNWGHVPDSARVSITSEGG------YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred EEEEEEEecC------CEEEEEECCeECCCCCCEEEEECCC------EEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 6899999998 9999999999887777766554322 368999999999999999999999998766554
Q ss_pred EE
Q psy670 88 LN 89 (540)
Q Consensus 88 l~ 89 (540)
+.
T Consensus 74 ~~ 75 (78)
T cd05743 74 GI 75 (78)
T ss_pred EE
Confidence 43
No 119
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.32 E-value=3.2e-11 Score=90.27 Aligned_cols=85 Identities=26% Similarity=0.542 Sum_probs=61.4
Q ss_pred CeEEeCCceEEeeC---CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670 312 PTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK 387 (540)
Q Consensus 312 p~~~~~~~~~~~~~---g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~ 387 (540)
|.|...|....+.+ |..+.|.|.+.|.|.|.++|++++..+..... +... .++ .|.|.++. .+|+|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~--~~g----~L~I~~~~~~~D~G~Y~ 74 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSM--VGG----NLVINNPDKYKDAGRYV 74 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEE--ECC----EEEECcCCcCCCCEEEE
Confidence 45555565554433 44799999999999999999999998854322 2221 222 79998875 68999999
Q ss_pred EEEEcCCeeeE-EEEEE
Q psy670 388 CNIKNFHGELN-ANLTL 403 (540)
Q Consensus 388 C~a~n~~g~~~-~~~~l 403 (540)
|.|.|..|... +.++|
T Consensus 75 C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 75 CIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEeCcceEEEccEEE
Confidence 99999999763 34444
No 120
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.32 E-value=1.5e-11 Score=91.00 Aligned_cols=78 Identities=14% Similarity=0.311 Sum_probs=60.6
Q ss_pred CeEEEEEEEEccCCC--eEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 327 KLVVMECKVKAKPMP--EIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 327 ~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
+++.|.|.+.|.|.| .+.|+++|..+..... +........ ...|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 77 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDS---NGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccc---cceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence 468999999999987 6799999998764321 111111111 22799999999999999999999999999999
Q ss_pred EEEEEE
Q psy670 402 TLNIEM 407 (540)
Q Consensus 402 ~l~V~~ 407 (540)
.|.|..
T Consensus 78 ~l~V~~ 83 (85)
T cd04970 78 DLIVRG 83 (85)
T ss_pred EEEEEC
Confidence 999986
No 121
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.32 E-value=1.7e-11 Score=91.74 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=59.8
Q ss_pred CCeEEEEEEEEccCCCeEEEEEC----CEEccCCCceEEEEEecCC-----eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHE----GKELQQTDRISWNVTLKGD-----KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
|+.+.|.|.+.|.|.|.|.|+++ |..+.............+. ....+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 4444333222222111111 11248999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy670 397 LNANLTLNI 405 (540)
Q Consensus 397 ~~~~~~l~V 405 (540)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 998888877
No 122
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.32 E-value=2.1e-11 Score=90.59 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=63.2
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+++.|.|.+.|.|. .+.|++ ++..+..+.++..... ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~-----g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKE-----GVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeC-----CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 456789999999999999998 999998 5667765555544321 112489999999999999999999999875
Q ss_pred -EEEEEEEE
Q psy670 190 -NANIALNF 197 (540)
Q Consensus 190 -~~~~~l~v 197 (540)
...+.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 56666654
No 123
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.31 E-value=5e-11 Score=92.33 Aligned_cols=98 Identities=17% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCeeccCCceee----cCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCC-CCCc
Q psy670 206 FAPSFIEKPRIIP----NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPI-GPDS 279 (540)
Q Consensus 206 ~~p~~~~~~~~~~----~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 279 (540)
++|.|...+.... ...|..+.|.|.+.|.|.+.+.|++++..+.... ++............+.|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 4566655444211 1357899999999999999999999999886432 33322222223334689999997 5899
Q ss_pred EEEEEEEEcCCCCeeeeEEEEEee
Q psy670 280 GTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 280 g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
|.|+|.|.|..|.....+.|.+..
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~ 106 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTS 106 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecC
Confidence 999999999999998888888765
No 124
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.30 E-value=3.5e-11 Score=90.18 Aligned_cols=84 Identities=30% Similarity=0.539 Sum_probs=62.1
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG- 395 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g- 395 (540)
|....+..|+.+.|.|.+.|.|+ .+.|++ ++..+....+.... . .....++|.|.+++.+|+|.|+|.|.|..|
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~--~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVV--Q-NDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEE--e-CCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 44567889999999999999974 999997 56655543443221 1 222345899999999999999999999854
Q ss_pred eeEEEEEEEE
Q psy670 396 ELNANLTLNI 405 (540)
Q Consensus 396 ~~~~~~~l~V 405 (540)
....++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 4566666653
No 125
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.30 E-value=1e-11 Score=91.90 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred cccceeeeCcceeEEeecceeeeeecCeecccCC---ceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce
Q psy670 6 ELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSD---RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 6 ~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 82 (540)
..+.|.+.|.|. |...+.|+|+|+++..+. +++...... ..++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 3 ~~L~C~~~g~P~----p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 73 (85)
T cd04970 3 ITLQCHASHDPT----LDLTFTWSFNGVPIDFDKDGGHYRRVGGKD-----SNGDLMIRNAQLKHAGKYTCTAQTVVDSL 73 (85)
T ss_pred EEEEEEEecCCC----CCeEEEEEECCeEeeccCCCccEEEEeccc-----ccceEEEccCCHHhCeeeEEEEecCCCcE
Confidence 347899999997 223789999999886432 222111111 13589999999999999999999999999
Q ss_pred eeeEEEEEeec
Q psy670 83 SSTVNLNFSEE 93 (540)
Q Consensus 83 ~~~~~l~v~~~ 93 (540)
+.++.|.|..+
T Consensus 74 ~~~~~l~V~~p 84 (85)
T cd04970 74 SASADLIVRGP 84 (85)
T ss_pred EEEEEEEEECC
Confidence 99999998764
No 126
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=2.4e-11 Score=87.34 Aligned_cols=73 Identities=29% Similarity=0.540 Sum_probs=58.8
Q ss_pred CCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
|+.+.|.|.+.|.|.+.+.|++ ++..+....+...... .+|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN--------GTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC--------CEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 7889999999999999999997 6666655443332211 179999999999999999999999988888777
Q ss_pred EE
Q psy670 196 NF 197 (540)
Q Consensus 196 ~v 197 (540)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 64
No 127
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.30 E-value=2.1e-11 Score=91.07 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=57.8
Q ss_pred CCeEEEEEEEEccCCCeEEEEECC----EEccCCCceEEEEEec---C--CeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEG----KELQQTDRISWNVTLK---G--DKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~----~~~~~~~~~~~~~~~~---~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
|+.+.|.|.+.|.|.|.|+|++++ ..+............. . ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999964 3332211111111110 0 011127999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy670 397 LNANLTLNI 405 (540)
Q Consensus 397 ~~~~~~l~V 405 (540)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999998887
No 128
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.30 E-value=2e-11 Score=90.08 Aligned_cols=78 Identities=27% Similarity=0.500 Sum_probs=62.3
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (540)
....|+++.|.|.+.|.|.+.+.|++++..+......... .....|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 77 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR-------KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT 77 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec-------CceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence 3567999999999999999999999999877543322111 112489999999999999999999999988777
Q ss_pred EEEEE
Q psy670 193 IALNF 197 (540)
Q Consensus 193 ~~l~v 197 (540)
+.|.|
T Consensus 78 ~~v~v 82 (82)
T cd05856 78 YKVDV 82 (82)
T ss_pred EEEeC
Confidence 77654
No 129
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.30 E-value=8.9e-12 Score=88.12 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=55.8
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.+.|.+.|.|. |.+.|+|++..+.. .++.+. .+ .+|+|.+++.+|+|.|+|.+.|..|....++
T Consensus 2 ~l~C~~~g~P~------p~v~W~k~~~~~~~-~~~~~~--~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 65 (69)
T cd05725 2 EFQCEVGGDPV------PTVLWRKEDGELPK-GRAEIL--DD-------KSLKIRNVTAGDEGSYTCEAENMVGKIEASA 65 (69)
T ss_pred EEEEECccCCC------CEEEEEECCccCCC-CcEEEe--eC-------CEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence 36899999999 99999999887754 344432 22 3899999999999999999999999988887
Q ss_pred EEEE
Q psy670 87 NLNF 90 (540)
Q Consensus 87 ~l~v 90 (540)
.|.|
T Consensus 66 ~l~V 69 (69)
T cd05725 66 SLTV 69 (69)
T ss_pred EEEC
Confidence 7754
No 130
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.30 E-value=1.9e-11 Score=87.20 Aligned_cols=70 Identities=26% Similarity=0.551 Sum_probs=56.8
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|.+.|++++..+.... .. ....+ ..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~--~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TK--FENFN----KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-ee--EecCC----CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4689999999999999999988775432 11 11111 27999999999999999999999999988888876
No 131
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=2.6e-11 Score=85.00 Aligned_cols=70 Identities=30% Similarity=0.499 Sum_probs=54.9
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|++.|+++|.++..... .. ..++. +|.|.+++.+|+|.|+|.|.|......+...+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~--~~~~~----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RY--HVDGY----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EE--EeCCC----EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 46899999999999999999999876432 11 12332 7999999999999999999998776665555443
No 132
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=2.4e-11 Score=87.35 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=58.1
Q ss_pred CCeEEEEEEEEccCCCeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.. ....+ +|.|..+..+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~--~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL--VYDNG-----TLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEE--EecCC-----EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 6889999999999999999997 566555443322 11222 789999999999999999999999988888776
Q ss_pred E
Q psy670 405 I 405 (540)
Q Consensus 405 V 405 (540)
|
T Consensus 74 v 74 (74)
T cd05764 74 I 74 (74)
T ss_pred C
Confidence 5
No 133
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.29 E-value=1.8e-11 Score=86.56 Aligned_cols=69 Identities=28% Similarity=0.639 Sum_probs=56.1
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+.|.|.+.|.|.|.+.|++++..+... +... . .+. .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~-~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEI--L-DDK----SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEE--e-eCC----EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 478999999999999999998776443 2222 1 222 7999999999999999999999999988888765
No 134
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.29 E-value=2.4e-11 Score=90.99 Aligned_cols=77 Identities=25% Similarity=0.559 Sum_probs=61.0
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccC------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQ------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
|+.+.|.|.+.|.|.|.+.|+++|..+.. ....++....++ .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 68899999999999999999998765311 111122222122 7999999999999999999999999999
Q ss_pred EEEEEEEE
Q psy670 400 NLTLNIEM 407 (540)
Q Consensus 400 ~~~l~V~~ 407 (540)
++.|.|..
T Consensus 76 ~~~l~V~~ 83 (90)
T cd05726 76 KAYLEVTD 83 (90)
T ss_pred EEEEEEee
Confidence 99999986
No 135
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.28 E-value=2.8e-11 Score=87.48 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=57.9
Q ss_pred CCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 317 KPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
.|....+..|+.+.|.|.+.|.|.| .|.|+++|.++..... ..+ +.|.|..+ .|+|.|+|.|+|..|
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~------~~~----s~L~i~~~--~d~g~Y~C~A~N~~G 71 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA------PSP----SVLNVPGL--NETSKFSCEAHNAKG 71 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC------CCC----CEEEEccc--cCCeEEEEEEEeccC
Confidence 4566788899999999999999999 7999999998864111 111 27888876 478999999999999
Q ss_pred eeE-EEEEE
Q psy670 396 ELN-ANLTL 403 (540)
Q Consensus 396 ~~~-~~~~l 403 (540)
... +.++|
T Consensus 72 ~~~s~~a~~ 80 (81)
T cd05749 72 VTTSRTGTV 80 (81)
T ss_pred cEEeeeEEe
Confidence 654 34443
No 136
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.27 E-value=1.4e-11 Score=88.99 Aligned_cols=71 Identities=20% Similarity=0.361 Sum_probs=55.2
Q ss_pred ccceeeeC-cceeEEeecceeeeeecCeecccCCceEE-EEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee
Q psy670 7 LKSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSS-TLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS 84 (540)
Q Consensus 7 ~~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~ 84 (540)
.+.|.+.| .|. |.+.|+|+|.++..+.+... ....+. ..++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 2 ~l~C~~~g~~P~------p~~~W~k~g~~l~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 2 VLKCEATSEYPS------LRFKWFKDGKELNRKNKPRNIKIRNKK----KNSELQINKAKLADSGEYTCVVENILGNDTV 71 (75)
T ss_pred EEEEEccCCCCC------ceEEEEcCCeeccccCCcceEEEEecC----ceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence 37899999 898 99999999999976654331 111111 2368999999999999999999999998766
Q ss_pred eEE
Q psy670 85 TVN 87 (540)
Q Consensus 85 ~~~ 87 (540)
++.
T Consensus 72 ~~~ 74 (75)
T cd05750 72 TAN 74 (75)
T ss_pred EEe
Confidence 553
No 137
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.27 E-value=1.1e-10 Score=89.04 Aligned_cols=92 Identities=15% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeecc--CceEEEEecCCCeEEEEEEEeCCCC-CCcEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKES--SKIKIIVNEQDDTYEIICEITDPIG-PDSGTY 282 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y 282 (540)
+|.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+... .++.+..........+.|.|.++.. +|.|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 44443 3455667889999999999999998 69999999888654 3444433322334456899999999 458999
Q ss_pred EEEEEcCCCCeeeeEEE
Q psy670 283 RCNVKNEFGESNANLNL 299 (540)
Q Consensus 283 ~C~~~~~~~~~~~~~~l 299 (540)
.|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999987776554
No 138
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.27 E-value=2.9e-11 Score=90.57 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=60.4
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeec--------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIE--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
|+.+.|.|.+.|.|.+.+.|+|++..+. ...++.... . ..|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-----~---~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-----T---GDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-----C---CeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 7889999999999999999999876431 122222211 1 27999999999999999999999999
Q ss_pred eEEEEEEEEec
Q psy670 189 SNANIALNFQG 199 (540)
Q Consensus 189 ~~~~~~l~v~~ 199 (540)
....+.|.|.+
T Consensus 73 ~~~~~~l~V~~ 83 (90)
T cd05726 73 ILTKAYLEVTD 83 (90)
T ss_pred eEEEEEEEEee
Confidence 99999999885
No 139
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.27 E-value=2.5e-11 Score=90.87 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=62.6
Q ss_pred eEEeeCCCeEEEEEEEEc-----cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 320 IRSEQGGKLVVMECKVKA-----KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~-----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
...+.+|+.+.|.|.+.+ .|.+.|.|++++..+.............+. .|.|.++..+|+|.|+|.+.|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~----~L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD----LLWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC----eEEEccCCcccCeEEEEEEcCCC
Confidence 345678999999999998 688899999998765432111111122222 79999999999999999999999
Q ss_pred eeeEEEEEEEE
Q psy670 395 GELNANLTLNI 405 (540)
Q Consensus 395 g~~~~~~~l~V 405 (540)
|....++.|.|
T Consensus 84 g~~~~~~~L~v 94 (94)
T cd05756 84 YCMKVSISLTV 94 (94)
T ss_pred ccEEEEEEEEC
Confidence 99888887765
No 140
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.27 E-value=4.8e-11 Score=89.27 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=58.6
Q ss_pred CCeEEEEEEEeecCCCceEEEeC----CEeecCCCceE--EEEee--cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 117 GDLLVMECVLEASPMPDIIWYQG----TKVIEDTGRIK--MSKKS--IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~----~~~~~~~~~~~--~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
|++++|.|.+.|.|.|.|.|+|+ +..+....... ..... .........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78899999999999999999984 44443222111 11100 001112348999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy670 189 SNANIALNF 197 (540)
Q Consensus 189 ~~~~~~l~v 197 (540)
....+.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888876
No 141
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.26 E-value=5.8e-11 Score=88.47 Aligned_cols=78 Identities=24% Similarity=0.481 Sum_probs=62.0
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES- 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~- 189 (540)
...+.+|++++|.|.+.|. .+.+.|++++..+... +..+... . ..|.|.+++.+|+|.|.|.|.|..|..
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~----~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSND----N---RTLTFNNVTRSDTGHYQCEASNEVSNMT 82 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCC----C---CEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence 3467899999999999999 9999999999887543 3322211 1 279999999999999999999999874
Q ss_pred EEEEEEEE
Q psy670 190 NANIALNF 197 (540)
Q Consensus 190 ~~~~~l~v 197 (540)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 55666665
No 142
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.26 E-value=3e-11 Score=84.72 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=51.4
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
+.|.|.+.|.|.|.+.|+|+|.++..... ..... . .+|.|.+++.+|+|.|+|.+.+..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~----~---~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD----G---YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC----C---CEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 47899999999999999999998865422 11111 1 179999999999999999999976554444333
No 143
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.26 E-value=5.3e-11 Score=88.60 Aligned_cols=81 Identities=28% Similarity=0.547 Sum_probs=62.6
Q ss_pred CceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 318 PKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
|....+.+|+.+.|.|.+ .+.|.|.+.|+++|..+...... ..... ++ .|.|.+++.+|+|.|+|.|.|..|.
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~-~~~~~-~~----~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNER-VRIVD-DG----NLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCC-EEEcc-CC----EEEEeECCcccCEEEEEEEEeccCc
Confidence 445677899999999998 68999999999999988763321 11111 12 7999999999999999999999887
Q ss_pred e-EEEEEEE
Q psy670 397 L-NANLTLN 404 (540)
Q Consensus 397 ~-~~~~~l~ 404 (540)
. +..+.|.
T Consensus 77 ~~s~~~~l~ 85 (86)
T cd05724 77 RESAAARLS 85 (86)
T ss_pred eeeeeEEEE
Confidence 5 4455544
No 144
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.26 E-value=1e-10 Score=88.02 Aligned_cols=81 Identities=21% Similarity=0.444 Sum_probs=59.6
Q ss_pred CeeccCCceeecC---CCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEE
Q psy670 208 PSFIEKPRIIPNE---SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYR 283 (540)
Q Consensus 208 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~ 283 (540)
|.|+..|..+.+. +|+.+.|.|.+.|.|.++++|+++|..+...........+ ..|.|.++. .+|+|.|+
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~------g~L~i~~~~~~~D~G~Y~ 75 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID------GNLIISNPSEVKDSGRYQ 75 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC------CeEEEccCCccCcCEEEE
Confidence 3444455554432 4789999999999999999999999988654333332221 167888874 68999999
Q ss_pred EEEEcCCCCee
Q psy670 284 CNVKNEFGESN 294 (540)
Q Consensus 284 C~~~~~~~~~~ 294 (540)
|.|.|..|...
T Consensus 76 C~A~N~~G~~~ 86 (94)
T cd05848 76 CLATNSIGSIL 86 (94)
T ss_pred EEEEcCCCeEE
Confidence 99999998763
No 145
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.26 E-value=1.5e-10 Score=85.02 Aligned_cols=81 Identities=16% Similarity=0.357 Sum_probs=58.6
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe--eeEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG--ELNANLTL 403 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 403 (540)
|++++|.|.+.+.|.+.+.|++.++....................++|.|.+++.+|+|.|+|.|.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7889999999999999999998776532211111111222333456899999999999999999999876 55666666
Q ss_pred EEE
Q psy670 404 NIE 406 (540)
Q Consensus 404 ~V~ 406 (540)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 664
No 146
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.26 E-value=3.4e-11 Score=85.94 Aligned_cols=70 Identities=33% Similarity=0.703 Sum_probs=56.3
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 197 (540)
+.|.|.+.|.|.|.+.|+|++..+... +..... ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFEN-------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEec-------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999999998876533 221111 1227999999999999999999999999888888776
No 147
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.25 E-value=2e-10 Score=85.72 Aligned_cols=92 Identities=22% Similarity=0.384 Sum_probs=71.8
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCC--CceEEEEEecCCeeEEEEEEcCCCCCC-CeeE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQT--DRISWNVTLKGDKYHIRLEVKDPRKED-TGLY 386 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y 386 (540)
||.+ .......+.+|+.+.|.|.+.+.|+| .|.|.+++..+... .++.+..........++|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4444 45566778899999999999888887 68999988877553 455554444455567799999998777 7999
Q ss_pred EEEEEcCCeeeEEEEEE
Q psy670 387 KCNIKNFHGELNANLTL 403 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l 403 (540)
.|.|.|..|.....++|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999888776
No 148
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.25 E-value=2.7e-11 Score=87.05 Aligned_cols=66 Identities=23% Similarity=0.494 Sum_probs=53.8
Q ss_pred eEEeCCceEEeeCCCeEEEEEEEEccCC-CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670 313 TFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391 (540)
Q Consensus 313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 391 (540)
.+...|....+.+|++++|+|.+.+.|. ..+.|+++|..+... +. .|.|.++ .+|+|.|+|.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~----------~~----~l~i~~~-~~dsG~Y~C~a~ 66 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT----------TN----SYRIRAA-NNDSGEYRCQTQ 66 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc----------CC----eEEEeec-ccCCEEeEEECC
Confidence 4455667778899999999999998876 479999999887321 11 7889898 999999999998
Q ss_pred cC
Q psy670 392 NF 393 (540)
Q Consensus 392 n~ 393 (540)
|.
T Consensus 67 ~~ 68 (78)
T cd05752 67 GS 68 (78)
T ss_pred CC
Confidence 85
No 149
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.24 E-value=8.1e-11 Score=86.87 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=59.5
Q ss_pred CCeEEEEEEEeec--CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEE
Q psy670 117 GDLLVMECVLEAS--PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194 (540)
Q Consensus 117 G~~v~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 194 (540)
|+++.|.|.+.+. |.+.+.|++++..+...................+.|.|.+++.+|+|.|+|.+.|..+....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 78899999887655322111100011112234568999999999999999999999988877777
Q ss_pred EEE
Q psy670 195 LNF 197 (540)
Q Consensus 195 l~v 197 (540)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 150
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.23 E-value=6.5e-11 Score=85.49 Aligned_cols=72 Identities=24% Similarity=0.551 Sum_probs=56.0
Q ss_pred EEEEEEEEc-cCCCeEEEEECCEEccCCCceEE-EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 329 VVMECKVKA-KPMPEIVWFHEGKELQQTDRISW-NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
+.|.|.+.| .|.|.+.|+++|..+........ .... ......|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRN--KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEe--cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 99999999999998876544321 1111 112348999999999999999999999998776654
No 151
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.23 E-value=9.3e-11 Score=86.55 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=60.3
Q ss_pred CCeEEEEEEEEcc--CCCeEEEEECCEEccCCCceE-EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 326 GKLVVMECKVKAK--PMPEIVWFHEGKELQQTDRIS-WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 326 g~~v~l~C~~~~~--p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
|+.+.|.|.+.+. |.+.+.|.+++..+....... ...........+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7889999999998 788999998877653321111 0011112234558999999999999999999999999888888
Q ss_pred EEE
Q psy670 403 LNI 405 (540)
Q Consensus 403 l~V 405 (540)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 152
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.22 E-value=8.9e-11 Score=87.70 Aligned_cols=81 Identities=27% Similarity=0.381 Sum_probs=58.0
Q ss_pred CCeEEEEEEEeecCCCceEEEeCC----EeecCCCc--eEEEEe--ecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGT----KVIEDTGR--IKMSKK--SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~----~~~~~~~~--~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
|+.++|.|.+.|.|.|.|+|+|++ ..+..... ...... ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999964 22221111 111111 0011111237999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy670 189 SNANIALNF 197 (540)
Q Consensus 189 ~~~~~~l~v 197 (540)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888888876
No 153
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.22 E-value=3.2e-11 Score=87.12 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=50.9
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc----CCCeeEEEEEEccCcce
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK----SDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~ 82 (540)
.+.|.+.|.|. |.|+|+|||.++......++...... ++|.|.+++. +|+|.|+|.|.|..|..
T Consensus 2 ~l~C~~~G~P~------P~v~W~k~g~~l~~~~~~~~~~~~~~------g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 2 VIKCEAKGNPP------PTFSWTRNGTHFDPEKDPRVTMKPDS------GTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred EEEeeCcccCC------CeEEEEECCeECCCCCCCCEEEeCCC------CEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 36899999999 99999999999865443344333222 4888988864 79999999999999875
Q ss_pred ee
Q psy670 83 SS 84 (540)
Q Consensus 83 ~~ 84 (540)
.+
T Consensus 70 ~s 71 (77)
T cd05733 70 IS 71 (77)
T ss_pred Ec
Confidence 43
No 154
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.22 E-value=6.9e-11 Score=85.34 Aligned_cols=66 Identities=20% Similarity=0.437 Sum_probs=49.6
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC----CCCeeEEEEEEcCCeeeE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK----EDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~ 398 (540)
+.|.|.+.|.|.|.++|+++|..+.......+......+ .|.|..+.. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG----TLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 478999999999999999999988654332232222222 688877653 689999999999999754
No 155
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.22 E-value=3.8e-11 Score=89.94 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=61.6
Q ss_pred CccccCCCeEEEEEEEee-----cCCCceEEEeCCEeecCC--CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEA-----SPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
...+.+|+.+.|.|.+.+ .|.+.+.|||++..+... ...++... . ..|.|.++..+|+|.|+|.+.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~----~---~~L~I~~~~~~DsG~Y~C~~~ 80 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ----K---DLLWFLPAALEDSGLYTCVVR 80 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec----C---CeEEEccCCcccCeEEEEEEc
Confidence 456779999999999988 688899999998764321 11222111 1 279999999999999999999
Q ss_pred cCCceeEEEEEEEE
Q psy670 184 NSIGESNANIALNF 197 (540)
Q Consensus 184 ~~~~~~~~~~~l~v 197 (540)
|..|.....+.|.|
T Consensus 81 N~~g~~~~~~~L~v 94 (94)
T cd05756 81 NSTYCMKVSISLTV 94 (94)
T ss_pred CCCccEEEEEEEEC
Confidence 99998888877764
No 156
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.21 E-value=1.2e-10 Score=83.89 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=48.8
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC----CCCeeEEEEEEcCCeeeEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK----EDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 399 (540)
+.|.|.+.|.|.|+|+|+++|..+.............++ +|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG----TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 468999999999999999999987433322222222222 677766654 3789999999999997644
No 157
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.21 E-value=3.2e-10 Score=85.40 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=59.2
Q ss_pred CeeccCCceeecCC---CCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEE
Q psy670 208 PSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYR 283 (540)
Q Consensus 208 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~ 283 (540)
|.|...|....+.+ |+.+.|.|.+.|.|.+.++|+++|..+.......+.... ..|.|.++. ..|+|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~------g~L~I~~~~~~~D~G~Y~ 75 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA------GNLVINNPQKARDAGSYQ 75 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC------CeEEEccCCccCcCEEEE
Confidence 34455555554444 468999999999999999999999988644322222221 257887755 58999999
Q ss_pred EEEEcCCCCeee
Q psy670 284 CNVKNEFGESNA 295 (540)
Q Consensus 284 C~~~~~~~~~~~ 295 (540)
|.|.|..|....
T Consensus 76 C~A~N~~G~~~s 87 (94)
T cd05850 76 CLAINRCGTVVS 87 (94)
T ss_pred EEEEcCcCcEEE
Confidence 999999997643
No 158
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.21 E-value=1.5e-10 Score=86.77 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=60.3
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce-
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE- 188 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~- 188 (540)
...+..|+++.|.|.+.|.|. .+.|++ ++..+....+..... .....++|+|.+++.+|+|.|+|.+.|..|.
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred cEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 356889999999999999875 999998 566665444433321 1223458999999999999999999998654
Q ss_pred eEEEEEEE
Q psy670 189 SNANIALN 196 (540)
Q Consensus 189 ~~~~~~l~ 196 (540)
...++.|.
T Consensus 84 ~~~sv~l~ 91 (92)
T cd04977 84 SEATVNLK 91 (92)
T ss_pred ceeEEEEE
Confidence 46666654
No 159
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.21 E-value=1.2e-10 Score=86.78 Aligned_cols=78 Identities=28% Similarity=0.510 Sum_probs=60.7
Q ss_pred CccccCCCeEEEEEEE-eecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 111 PTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
...+.+|+++.|.|.+ .|.|.+.+.|++++..+... .+..... ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--------DGNLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--------CCEEEEeECCcccCEEEEEEEEeccCc
Confidence 3567799999999998 78999999999999987653 2332221 127999999999999999999999887
Q ss_pred e-EEEEEEE
Q psy670 189 S-NANIALN 196 (540)
Q Consensus 189 ~-~~~~~l~ 196 (540)
. +..+.|.
T Consensus 77 ~~s~~~~l~ 85 (86)
T cd05724 77 RESAAARLS 85 (86)
T ss_pred eeeeeEEEE
Confidence 5 4444443
No 160
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.21 E-value=9.1e-11 Score=86.18 Aligned_cols=77 Identities=30% Similarity=0.598 Sum_probs=56.2
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCE---Ec-cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGK---EL-QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~---~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
|+.+.|.|.+.|.|.|.+.|++++. .+ .............. ...|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN---IGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc---ccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 6889999999999999999999742 11 11111000000011 12799999999999999999999999998888
Q ss_pred EEEE
Q psy670 402 TLNI 405 (540)
Q Consensus 402 ~l~V 405 (540)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 8865
No 161
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.20 E-value=5.6e-11 Score=85.53 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=48.6
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc----CCCeeEEEEEEccCcce
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK----SDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~ 82 (540)
.++|.+.|.|. |.|+|+|+|..+......++....++ ++|.|.+++. +|+|.|+|.|.|..|..
T Consensus 2 ~l~C~~~G~P~------P~v~W~k~g~~~~~~~~~~~~~~~~~------~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 2 IIECEAKGNPV------PTFQWTRNGKFFNVAKDPRVSMRRRS------GTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred EEEEeccccCC------CEEEEEECCEEccCcCCCcEEEeCCC------ceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 47899999999 99999999997643322223322222 4888987642 47999999999999965
Q ss_pred ee
Q psy670 83 SS 84 (540)
Q Consensus 83 ~~ 84 (540)
.+
T Consensus 70 ~s 71 (77)
T cd05875 70 LS 71 (77)
T ss_pred EE
Confidence 43
No 162
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.20 E-value=2.8e-10 Score=85.37 Aligned_cols=81 Identities=25% Similarity=0.557 Sum_probs=58.8
Q ss_pred CeEEeCCceEEee---CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670 312 PTFIEKPKIRSEQ---GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK 387 (540)
Q Consensus 312 p~~~~~~~~~~~~---~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~ 387 (540)
|.|...|....+. .|..+.|.|.+.|.|.|.++|++++..+.......... .++ .|.|.++. .+|+|.|+
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~--~~~----~L~i~~~~~~~d~G~Y~ 75 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL--VGG----NLVISNPSKAKDAGRYQ 75 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE--ECC----EEEEecCCccCCCEEEE
Confidence 3455555554443 34679999999999999999999999885433322222 122 68888776 48999999
Q ss_pred EEEEcCCeeeE
Q psy670 388 CNIKNFHGELN 398 (540)
Q Consensus 388 C~a~n~~g~~~ 398 (540)
|.|.|..|...
T Consensus 76 C~a~N~~G~~~ 86 (91)
T cd04967 76 CLASNIVGTVL 86 (91)
T ss_pred EEEEcCCCEEE
Confidence 99999998754
No 163
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.20 E-value=6.7e-11 Score=85.14 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=49.4
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc----CCCeeEEEEEEccCcce
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK----SDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~ 82 (540)
.+.|.+.|.|. |+|+|+|+|.++.......+.....+ ++|.|..+.. .|+|.|+|.|.|..|..
T Consensus 2 ~l~C~a~G~P~------P~i~W~k~g~~l~~~~~~~~~~~~~~------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 2 VIQCEAKGKPP------PSFSWTRNGTHFDIDKDPKVTMKPNT------GTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred EEEeeCcccCC------CeEEEEECCeECCCcCCCCEEEeCCC------ceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 36899999999 99999999998854433333332222 4788877765 37899999999999976
Q ss_pred ee
Q psy670 83 SS 84 (540)
Q Consensus 83 ~~ 84 (540)
.+
T Consensus 70 ~s 71 (77)
T cd05874 70 VS 71 (77)
T ss_pred Ee
Confidence 54
No 164
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.19 E-value=1.8e-10 Score=82.87 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=48.1
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC----CCCCeeEEEEEEcCCeeeEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR----KEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~a~n~~g~~~~ 399 (540)
+.|.|.+.|.|.|.++|+++|..+.............++ +|.|..+. .+|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG----TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc----eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 468999999999999999999876432222222222222 68887653 24699999999999997643
No 165
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.18 E-value=6.4e-10 Score=81.64 Aligned_cols=81 Identities=19% Similarity=0.385 Sum_probs=58.0
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc--eeEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG--ESNANIA 194 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~ 194 (540)
|++++|.|.+.+.|.+.+.|++.++....... .............+.|.|.+++.+|+|.|+|.+.+..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCce-EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 78999999999999999999987764322111 00111112233456899999999999999999998765 5567777
Q ss_pred EEEe
Q psy670 195 LNFQ 198 (540)
Q Consensus 195 l~v~ 198 (540)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7664
No 166
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.17 E-value=1.9e-10 Score=83.06 Aligned_cols=72 Identities=24% Similarity=0.484 Sum_probs=53.4
Q ss_pred EEEEEEEEc-cCCCeEEEEECCEEccCCCc--eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 329 VVMECKVKA-KPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
+.|.|.+.+ .|.+.+.|+++|..+..... ..+..... .....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK--KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC--CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999875 67889999999998864321 12222211 12348999999999999999999999998777654
No 167
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.15 E-value=6.2e-10 Score=83.33 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=57.0
Q ss_pred CeeccCCceeecCC---CCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEE
Q psy670 208 PSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYR 283 (540)
Q Consensus 208 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~ 283 (540)
|.|...|....+.+ |..+.|.|.+.|.|.+.++|++++..+...... ..... ..|.|.++. .+|+|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~-~~~~~------g~L~I~~~~~~~D~G~Y~ 74 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR-YSMVG------GNLVINNPDKYKDAGRYV 74 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCe-EEEEC------CEEEECcCCcCCCCEEEE
Confidence 34444444443333 457999999999999999999999887533221 11111 268898875 68999999
Q ss_pred EEEEcCCCCee
Q psy670 284 CNVKNEFGESN 294 (540)
Q Consensus 284 C~~~~~~~~~~ 294 (540)
|.|.|..|...
T Consensus 75 C~A~N~~G~~~ 85 (93)
T cd05849 75 CIVSNIYGKVR 85 (93)
T ss_pred EEEEeCcceEE
Confidence 99999998753
No 168
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.15 E-value=5.4e-10 Score=84.64 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=59.8
Q ss_pred cCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCC-----CCCCcEEEEEEE
Q psy670 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP-----IGPDSGTYRCNV 286 (540)
Q Consensus 212 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~ 286 (540)
..|....+.+|+.+.|.|.+.+.|.+.+.|+++|..+............. + .+.|.++ +..|.|.|+|.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~----~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN-G----SLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC-C----eEEEeeeeccCCCCCcCEEEEEEE
Confidence 34556667789999999999999999999999999886544322221111 1 3444444 688999999999
Q ss_pred EcC-CCCe-eeeEEEE
Q psy670 287 KNE-FGES-NANLNLN 300 (540)
Q Consensus 287 ~~~-~~~~-~~~~~l~ 300 (540)
.|. .|.. +..+.|.
T Consensus 79 ~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 79 QNDSLGSIVSRTARLT 94 (95)
T ss_pred ECCccCcEEEeeeEEe
Confidence 999 8875 4444443
No 169
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.15 E-value=2.6e-10 Score=82.41 Aligned_cols=67 Identities=19% Similarity=0.418 Sum_probs=53.3
Q ss_pred CccccCCCeEEEEEEEeecCCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+.+.|.|.+.|.|.| +|.|+|+|.++..... . . .+.|.|..+ .|+|.|.|.|+|..|..
T Consensus 7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~--~------~---~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA--P------S---PSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC--C------C---CCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 4578899999999999999999 7999999998854110 0 1 127888876 47899999999999865
Q ss_pred E
Q psy670 190 N 190 (540)
Q Consensus 190 ~ 190 (540)
.
T Consensus 74 ~ 74 (81)
T cd05749 74 T 74 (81)
T ss_pred E
Confidence 3
No 170
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.14 E-value=1.6e-10 Score=83.46 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=51.7
Q ss_pred ccceeeeC-cceeEEeecceeeeeecCeecccCC--ceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670 7 LKSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSD--RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS 83 (540)
Q Consensus 7 ~~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~ 83 (540)
.++|.+.| .|. +.+.|||+|+++.... +.++...... ..++|.|.+++.+|+|.|+|.+.|..|..+
T Consensus 2 ~L~C~a~~~~p~------~~~~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~ 71 (76)
T cd05895 2 VLRCETVSEYPS------LRFKWFKNGKEIGAKNKPDNKIKIRKKK----KSSELQISKASLADNGEYKCMVSSKLGNDS 71 (76)
T ss_pred EEEEecccCCCC------CceEEEECCcccccCCCCCceEEEEeCC----cEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence 47898875 566 8999999999886432 1222211111 236899999999999999999999998877
Q ss_pred eeEE
Q psy670 84 STVN 87 (540)
Q Consensus 84 ~~~~ 87 (540)
.++.
T Consensus 72 ~~~~ 75 (76)
T cd05895 72 VTAN 75 (76)
T ss_pred EEEe
Confidence 6653
No 171
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.14 E-value=9.7e-10 Score=81.11 Aligned_cols=88 Identities=17% Similarity=0.313 Sum_probs=72.4
Q ss_pred CccccCCCeEEEEEEEeecCCCc-eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...|.+|+.+.|.|.+.++|.+. +.|.+++..+.................+.+.|.+..++.+|+|.|+|.|.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45688999999999999999997 99999988775444423333333556788999999999999999999999999988
Q ss_pred EEEEEEEEe
Q psy670 190 NANIALNFQ 198 (540)
Q Consensus 190 ~~~~~l~v~ 198 (540)
+..+.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 888888764
No 172
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.13 E-value=3e-10 Score=83.37 Aligned_cols=77 Identities=27% Similarity=0.437 Sum_probs=55.6
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCE---ee-cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTK---VI-EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (540)
|+.+.|.|.+.|.|.|.+.|+|++. .+ ........ .. .......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRG-NV---VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccC-CE---EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 7889999999999999999999732 11 11000000 00 00012389999999999999999999999998888
Q ss_pred EEEEE
Q psy670 193 IALNF 197 (540)
Q Consensus 193 ~~l~v 197 (540)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 87764
No 173
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.13 E-value=9.6e-10 Score=81.66 Aligned_cols=82 Identities=26% Similarity=0.524 Sum_probs=64.0
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
..+..|+.+.|.|.+.+.|.+.+.|++++..+......... ........|.|.++..+|+|.|+|.+.|..|....+
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY---KVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE---EccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 34567999999999999999999999999887654432211 111223379999999999999999999999988888
Q ss_pred EEEEE
Q psy670 401 LTLNI 405 (540)
Q Consensus 401 ~~l~V 405 (540)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05729 81 YKVDV 85 (85)
T ss_pred EEEeC
Confidence 77764
No 174
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.12 E-value=3e-10 Score=81.63 Aligned_cols=66 Identities=21% Similarity=0.461 Sum_probs=53.0
Q ss_pred eeccCCceeecCCCCeEEEEEEecccCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
.+...|....+.+|++++|.|.+.+.|. ..+.|++++..+.... ..|.|.++ .+|+|.|+|.+.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~--------------~~l~i~~~-~~dsG~Y~C~a~ 66 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTT--------------NSYRIRAA-NNDSGEYRCQTQ 66 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccC--------------CeEEEeec-ccCCEEeEEECC
Confidence 3445567778889999999999998775 4699999998773211 26889899 999999999998
Q ss_pred cC
Q psy670 288 NE 289 (540)
Q Consensus 288 ~~ 289 (540)
+.
T Consensus 67 ~~ 68 (78)
T cd05752 67 GS 68 (78)
T ss_pred CC
Confidence 75
No 175
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.12 E-value=3e-10 Score=82.69 Aligned_cols=72 Identities=25% Similarity=0.413 Sum_probs=51.2
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCC------CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEE
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQT------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANL 401 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~ 401 (540)
++|.|.+.|.|.|.+.|++++...... ...+.....+ .+|.|.++..+|+|.|+|.|.|..|.. ++++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN-----GSLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC-----CeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 479999999999999999964322110 0111111111 279999999999999999999999876 5666
Q ss_pred EEEE
Q psy670 402 TLNI 405 (540)
Q Consensus 402 ~l~V 405 (540)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 6553
No 176
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.11 E-value=2.4e-09 Score=79.08 Aligned_cols=88 Identities=15% Similarity=0.240 Sum_probs=71.4
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEe-cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
..+.+.+|+++.|.|.++++|.|+ +.|.+++..+............ ....+.+.|.+.++..+|.|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 346788999999999999999997 9999998877554442222222 34467889999999999999999999999988
Q ss_pred eEEEEEEEEE
Q psy670 397 LNANLTLNIE 406 (540)
Q Consensus 397 ~~~~~~l~V~ 406 (540)
.+.++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888888764
No 177
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.08 E-value=3.8e-10 Score=82.15 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=49.7
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecc--------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEcc
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLK--------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNK 78 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~ 78 (540)
-+.|.+.|.|. |.+.|+|++.... ...++.+ ..+ ++|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~l~C~~~G~P~------P~v~W~~~~~~~~~~~~~~~~~~~r~~~--~~~-------~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 2 TLNCSAEGYPP------PTIVWKHSKGRGHPQHTHTCCLAGRIQL--LSN-------GSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred EeEeeCeEeCC------CEEEEEECCCccccccccccccCCCEEE--ecC-------CeEEECcCCcccCEEEEEEEEeC
Confidence 36899999999 9999999754221 1222222 122 48999999999999999999999
Q ss_pred Ccce-eeeEEEE
Q psy670 79 NGEG-SSTVNLN 89 (540)
Q Consensus 79 ~~~~-~~~~~l~ 89 (540)
.|.. +..+.|+
T Consensus 67 ~G~~~s~~~~l~ 78 (79)
T cd05734 67 VGADASKSMVLT 78 (79)
T ss_pred CCCCCceEEEEe
Confidence 9876 4455544
No 178
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.07 E-value=1.7e-09 Score=80.27 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=63.0
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (540)
.+..|+.+.|.|.+.+.|.+.+.|++++..+........... ......|.|.++..+|+|.|.|.+.|..|.....
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKV----RKKKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEc----cCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 456899999999999999999999999988764433322111 1122479999999999999999999999888777
Q ss_pred EEEEE
Q psy670 193 IALNF 197 (540)
Q Consensus 193 ~~l~v 197 (540)
+.|+|
T Consensus 81 ~~l~v 85 (85)
T cd05729 81 YKVDV 85 (85)
T ss_pred EEEeC
Confidence 77654
No 179
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.07 E-value=8.5e-10 Score=81.62 Aligned_cols=77 Identities=25% Similarity=0.405 Sum_probs=61.5
Q ss_pred CCceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 317 KPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
.|....+.+|+.++|.|.+.+ .|.+.+.|++++..+.... ...++ .|.|.+++.+|+|.|.|.|.|..|
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~----~L~I~~v~~~DsG~Y~C~a~n~~g 76 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNG----ILTIRNVQLSDAGTYVCTGSNMLD 76 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCC----EEEECCCCHHHCEEEEEEEeccCC
Confidence 455667889999999999975 6888999999987654321 11122 799999999999999999999999
Q ss_pred eeEEEEEE
Q psy670 396 ELNANLTL 403 (540)
Q Consensus 396 ~~~~~~~l 403 (540)
....++.|
T Consensus 77 ~~~~~~~l 84 (85)
T cd05754 77 TDEATATL 84 (85)
T ss_pred eEeEEEEE
Confidence 98887765
No 180
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.06 E-value=1.3e-09 Score=79.40 Aligned_cols=66 Identities=20% Similarity=0.393 Sum_probs=52.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
...+..|+++.|.|.+. .+.+++.|+++|.++..+. +..+.. ..|.|.+++.+|+|.|+|.+....
T Consensus 5 ~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~~---------~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 5 QRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLYR---------DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred eEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEEC---------CcEEEeCCCHHHCEEEEEEEEecc
Confidence 35678999999999984 4678999999999987653 332221 169999999999999999998763
No 181
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.05 E-value=3.9e-09 Score=78.80 Aligned_cols=92 Identities=17% Similarity=0.358 Sum_probs=70.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeecc--CceEEEEecCCCeEEEEEEEeCCCCCC-cEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKES--SKIKIIVNEQDDTYEIICEITDPIGPD-SGTY 282 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~y 282 (540)
+|.+ .......+.+|+.+.|.|.+.+.|.| .|.|..++..+... .++.+..........++|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4444 44556677799999999999887776 58999888776553 455555444555667799999998766 7999
Q ss_pred EEEEEcCCCCeeeeEEE
Q psy670 283 RCNVKNEFGESNANLNL 299 (540)
Q Consensus 283 ~C~~~~~~~~~~~~~~l 299 (540)
.|.|.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998776654
No 182
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.05 E-value=1.9e-09 Score=80.55 Aligned_cols=82 Identities=26% Similarity=0.475 Sum_probs=60.9
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc--eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH- 394 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~- 394 (540)
+....+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ..... ... .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~--~~~----~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV--TED----GLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE--cCC----CEEEccCCHHHCEEEEEEEecCcc
Confidence 34556788999999999977 8889999999987765431 12211 222 58999999999999999998765
Q ss_pred eeeEEEEEEEEE
Q psy670 395 GELNANLTLNIE 406 (540)
Q Consensus 395 g~~~~~~~l~V~ 406 (540)
+....+..|.|.
T Consensus 76 ~~~~~~~~l~V~ 87 (89)
T cd04979 76 KQTLATYSLNVL 87 (89)
T ss_pred ceeEeEEEEEEe
Confidence 445666777665
No 183
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.04 E-value=3.9e-09 Score=76.91 Aligned_cols=69 Identities=22% Similarity=0.452 Sum_probs=55.0
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
|....+..|+++.|.|.+.+ +.+.+.|+++|.++..+.. +... .++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~-r~~~-~~~-----~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA-KYLL-YRD-----GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc-eEEE-ECC-----cEEEeCCCHHHCEEEEEEEEecc
Confidence 45677889999999999854 6789999999999976532 2222 222 69999999999999999998874
No 184
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.03 E-value=3e-09 Score=79.79 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=56.9
Q ss_pred eeccCCceeecC---CCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEEE
Q psy670 209 SFIEKPRIIPNE---SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYRC 284 (540)
Q Consensus 209 ~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C 284 (540)
.|...|....+. .|+.+.|.|.+.+.|.+.++|++++..+............ ..|.|.++. .+|+|.|+|
T Consensus 3 ~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y~C 76 (91)
T cd04967 3 VFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG------GNLVISNPSKAKDAGRYQC 76 (91)
T ss_pred eeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC------CEEEEecCCccCCCEEEEE
Confidence 444455554433 3467999999999999999999999887433222222211 267888876 489999999
Q ss_pred EEEcCCCCee
Q psy670 285 NVKNEFGESN 294 (540)
Q Consensus 285 ~~~~~~~~~~ 294 (540)
.|.|..|...
T Consensus 77 ~a~N~~G~~~ 86 (91)
T cd04967 77 LASNIVGTVL 86 (91)
T ss_pred EEEcCCCEEE
Confidence 9999988643
No 185
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.03 E-value=1e-09 Score=81.51 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=58.1
Q ss_pred CccccCCCeEEEEEEEee-----cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEA-----SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
...+.+|+++.|.|...+ +|.+.+.|+|++.++........ . ...|.|.++..+|+|.|+|.+.+.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~--------~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-K--------GSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-c--------CCEEEEeeCChhhCEEEEEEEEec
Confidence 356789999999998743 25779999999999875543221 1 128999999999999999999998
Q ss_pred CceeEEEEEEE
Q psy670 186 IGESNANIALN 196 (540)
Q Consensus 186 ~~~~~~~~~l~ 196 (540)
.+.....++..
T Consensus 75 ~~~~~~~~t~t 85 (92)
T cd05757 75 HNGKQYNVTRT 85 (92)
T ss_pred CCCEEEEEEEE
Confidence 77654444433
No 186
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.03 E-value=4.6e-09 Score=78.62 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=57.8
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEcc--------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ--------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
.+..+.+|+++.|.|.+.+.|.+.|.|++++..+. .+.++... .. .....+|.|.++..+|+|.|+|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~--~~-~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV--KS-TPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE--eC-CCceEEEEECCCCcccCEEEEEEE
Confidence 45678899999999999999999999998875431 12222211 11 112348999999999999999999
Q ss_pred EcCCeeeEEEEEEE
Q psy670 391 KNFHGELNANLTLN 404 (540)
Q Consensus 391 ~n~~g~~~~~~~l~ 404 (540)
.. .-...+..+|.
T Consensus 82 ~t-~~~~~~~~~~~ 94 (95)
T cd05882 82 FT-MPVRTAKATVT 94 (95)
T ss_pred Ee-eccccEEEEEE
Confidence 87 33444455544
No 187
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.02 E-value=3.2e-09 Score=79.86 Aligned_cols=84 Identities=14% Similarity=0.304 Sum_probs=58.3
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCE--------EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--------ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
+....+.+|+++.|.|.+.+.|.+.+.|++.+. ....+.++.. ... .....+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~--~~~-~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL--VRA-SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEE--EEC-CCCcEEEEECcCCcccCEEEEEE
Confidence 345778899999999999999999999986322 1222333322 111 11233899999999999999999
Q ss_pred EEcCCeeeEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNI 405 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V 405 (540)
+.+.. ....+..|.|
T Consensus 81 ~~t~~-~~~~~~~l~v 95 (95)
T cd07701 81 LFTMP-VKTSKAYLTV 95 (95)
T ss_pred eEeec-CccEEEEEEC
Confidence 98843 3355555553
No 188
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.01 E-value=2.8e-09 Score=79.27 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=59.8
Q ss_pred EEeeCCCeEEEEEEEEc-----cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 321 RSEQGGKLVVMECKVKA-----KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~-----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
..+.+|....|.|...+ +|.|.+.|++++.++........ .+. .|.|.++..+|+|.|+|.|.|..+
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~----~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGS----KLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCC----EEEEeeCChhhCEEEEEEEEecCC
Confidence 45678999999998753 25779999999999876543221 222 899999999999999999999988
Q ss_pred eeEEEEEEEEE
Q psy670 396 ELNANLTLNIE 406 (540)
Q Consensus 396 ~~~~~~~l~V~ 406 (540)
....+++..+.
T Consensus 77 ~~~~~~t~t~~ 87 (92)
T cd05757 77 GKQYNVTRTIS 87 (92)
T ss_pred CEEEEEEEEEE
Confidence 76655555443
No 189
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.01 E-value=1.7e-09 Score=80.82 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=59.1
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCc--eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc-
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR--IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG- 187 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~- 187 (540)
...+.+|+++.|.|.+.+ |.+.+.|++++..+..... .+.... . ..|.|.+++.+|+|.|+|.+.+..+
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~---~----~~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT---E----DGLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc---C----CCEEEccCCHHHCEEEEEEEecCccc
Confidence 346778999999999966 7789999999887654321 111111 1 1699999999999999999987653
Q ss_pred eeEEEEEEEEe
Q psy670 188 ESNANIALNFQ 198 (540)
Q Consensus 188 ~~~~~~~l~v~ 198 (540)
.....+.|.|.
T Consensus 77 ~~~~~~~l~V~ 87 (89)
T cd04979 77 QTLATYSLNVL 87 (89)
T ss_pred eeEeEEEEEEe
Confidence 45667777765
No 190
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.00 E-value=5.7e-09 Score=78.12 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=53.1
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEee-c-------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI-E-------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN 181 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 181 (540)
....+.+|+++.|.|.+.+.|.+.+.|++++..+ . ...++.+.. ......+|.|.+++.+|+|.|+|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK----STPTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe----CCCceEEEEECCCCcccCEEEEEE
Confidence 4567889999999999999999999999977543 1 122222211 111234899999999999999999
Q ss_pred EEc
Q psy670 182 ACN 184 (540)
Q Consensus 182 ~~~ 184 (540)
+..
T Consensus 81 ~~t 83 (95)
T cd05882 81 IFT 83 (95)
T ss_pred EEe
Confidence 986
No 191
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.00 E-value=3.6e-09 Score=79.57 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=56.3
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEe--------ecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKV--------IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN 181 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 181 (540)
....+.+|+++.|.|.+.+.|.+.+.|++.+.. .....++..... .....+|.|.+++.+|+|.|+|.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC----CCCcEEEEECcCCcccCEEEEEE
Confidence 346788999999999999999999999874321 122334433211 11234899999999999999999
Q ss_pred EEcCCceeEEEEEEE
Q psy670 182 ACNSIGESNANIALN 196 (540)
Q Consensus 182 ~~~~~~~~~~~~~l~ 196 (540)
+.+.... .....|.
T Consensus 81 ~~t~~~~-~~~~~l~ 94 (95)
T cd07701 81 LFTMPVK-TSKAYLT 94 (95)
T ss_pred eEeecCc-cEEEEEE
Confidence 9874332 4444443
No 192
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.99 E-value=2.1e-09 Score=79.50 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=57.9
Q ss_pred CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+.++|.|.+.+ .|.+.+.|++++..+.... . .. ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--~------~~---~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--M------DF---NGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--c------cc---CCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 456789999999999964 6888999999886653211 0 01 1279999999999999999999999887
Q ss_pred EEEEEE
Q psy670 190 NANIAL 195 (540)
Q Consensus 190 ~~~~~l 195 (540)
...+.|
T Consensus 79 ~~~~~l 84 (85)
T cd05754 79 EATATL 84 (85)
T ss_pred eEEEEE
Confidence 776654
No 193
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.96 E-value=2.9e-09 Score=77.84 Aligned_cols=72 Identities=18% Similarity=0.373 Sum_probs=54.7
Q ss_pred EEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-E
Q psy670 321 RSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-N 398 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~ 398 (540)
..+.+|+.++|.|.+.+ .+...+.|+++|..+.... . ...|.|.+++.+|+|.|+|.+.+..|.. +
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------~----~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------S----NSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------C----CceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 35788999999999854 5667899999998664211 1 1279999999999999999999998743 3
Q ss_pred EEEEEE
Q psy670 399 ANLTLN 404 (540)
Q Consensus 399 ~~~~l~ 404 (540)
..+.|.
T Consensus 77 ~~~~i~ 82 (83)
T cd05753 77 EPVSIT 82 (83)
T ss_pred CCEEEE
Confidence 444443
No 194
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.94 E-value=9.7e-09 Score=75.19 Aligned_cols=71 Identities=24% Similarity=0.601 Sum_probs=56.0
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-eeEE
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-ELNA 399 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~ 399 (540)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+..... .+.+..++.+|+|.|+|.+.+..+ ..+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~ 74 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------------GLFIPNVSPEDSGNYTCRASNGSGSNTST 74 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------------EEEESSEEGGGTEEEEEEEEETTEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------------eeeeeeeccccCEEEEEEEEeCCCCeEee
Confidence 4578899999999999998999999999877753222 266688889999999999999664 3455
Q ss_pred EEEEEE
Q psy670 400 NLTLNI 405 (540)
Q Consensus 400 ~~~l~V 405 (540)
++.|.|
T Consensus 75 ~~~v~V 80 (80)
T PF13895_consen 75 SVNVTV 80 (80)
T ss_dssp EEEEEE
T ss_pred eEEeeC
Confidence 555554
No 195
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.94 E-value=7.5e-09 Score=76.22 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=57.7
Q ss_pred CCeEEEEEEEEccC--CCeEEEEECCEEccCCC---ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 326 GKLVVMECKVKAKP--MPEIVWFHEGKELQQTD---RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 326 g~~v~l~C~~~~~p--~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
|+++.|.|.+.+.+ ...+.|.+.+....... ..... ........++|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRS-LQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccc-ccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 78899999998765 45789988776442211 00000 01112345699999999999999999999999988888
Q ss_pred EEEEEE
Q psy670 401 LTLNIE 406 (540)
Q Consensus 401 ~~l~V~ 406 (540)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888775
No 196
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.93 E-value=9.3e-09 Score=75.73 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=57.0
Q ss_pred CCeEEEEEEEeecCC--CceEEEeCCEeecCCCceEE-EEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEE
Q psy670 117 GDLLVMECVLEASPM--PDIIWYQGTKVIEDTGRIKM-SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI 193 (540)
Q Consensus 117 G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (540)
|+++.|.|.+.+.+. ..+.|.+.++.......... ...........+.|.|.+++.+|+|.|+|.+.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999977654 47899887764321110000 000011233456999999999999999999999888887777
Q ss_pred EEEEe
Q psy670 194 ALNFQ 198 (540)
Q Consensus 194 ~l~v~ 198 (540)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77775
No 197
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.92 E-value=3.3e-09 Score=77.51 Aligned_cols=72 Identities=19% Similarity=0.352 Sum_probs=54.7
Q ss_pred ccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-
Q psy670 112 TIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES- 189 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~- 189 (540)
..+.+|+.++|.|.+. +.+...+.|+|+|..+.... ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 3588999999999984 35566899999997664211 01279999999999999999999988753
Q ss_pred EEEEEEE
Q psy670 190 NANIALN 196 (540)
Q Consensus 190 ~~~~~l~ 196 (540)
+..+.|+
T Consensus 76 s~~~~i~ 82 (83)
T cd05753 76 SEPVSIT 82 (83)
T ss_pred CCCEEEE
Confidence 4444444
No 198
>PHA03376 BARF1; Provisional
Probab=98.91 E-value=6.4e-08 Score=78.28 Aligned_cols=125 Identities=15% Similarity=0.281 Sum_probs=74.3
Q ss_pred CccccCCCeEEEEEEEeec---CCCceEEEeCC----Ee-ec------------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEAS---PMPDIIWYQGT----KV-IE------------DTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~---p~~~v~W~~~~----~~-~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
++.+..|+.+.|+|..... +.-.|.|+|.+ .. +. ...+..+. .+..+.+|.|.++
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~-----~~~gnvsLvI~~l 94 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH-----RSANTFFLVVTAA 94 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEE-----ecCCeEEEEEEee
Confidence 5677899999999987422 33479999942 11 11 11111111 1124568999999
Q ss_pred CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEE
Q psy670 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL 247 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~ 247 (540)
+.+|.|.|+|.+..........-.|.+.. +..+...........-+..++.|.+.++|.|.++|..+...
T Consensus 95 ~lSDdGtY~C~fQkge~~~~k~ehLt~V~-------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 95 NISHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred eecCCceEEEEEEcCCCceeeeeeeeeee-------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 99999999999987554332222222211 00111101000111245678999988899999999876543
No 199
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.91 E-value=3.5e-09 Score=78.32 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=54.9
Q ss_pred CCCccccCCCeEEEEEEE-eecCCCceEEEeCCEee--cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 109 KKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 109 ~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
..+..+.+|+.+.|.|.. .|.|.+.+.|++++..+ ..+.+..+.. .+ ..|.|.+++.+|+|.|+|.|.|.
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~----~~---G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ----TN---GNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC----CC---CcEEEeecCHhhCceeEEEEEec
Confidence 345678899999999988 78899999999998754 2233322221 11 18999999999999999999986
Q ss_pred Cc
Q psy670 186 IG 187 (540)
Q Consensus 186 ~~ 187 (540)
..
T Consensus 83 ~~ 84 (96)
T cd05727 83 SS 84 (96)
T ss_pred cc
Confidence 53
No 200
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.89 E-value=5.6e-09 Score=76.46 Aligned_cols=72 Identities=28% Similarity=0.659 Sum_probs=56.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc-ee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG-ES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~ 189 (540)
+..+.+|+.+.|.|.+.+.|...+.|++++..+..... .|.|.++..+|+|.|+|.+.+..+ ..
T Consensus 8 ~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~g~y~C~~~~~~~~~~ 72 (80)
T PF13895_consen 8 PQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------------GLFIPNVSPEDSGNYTCRASNGSGSNT 72 (80)
T ss_dssp SSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------------EEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred ceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------------eeeeeeeccccCEEEEEEEEeCCCCeE
Confidence 35678999999999999888899999999877752211 267788899999999999998654 34
Q ss_pred EEEEEEEE
Q psy670 190 NANIALNF 197 (540)
Q Consensus 190 ~~~~~l~v 197 (540)
+..+.|.|
T Consensus 73 s~~~~v~V 80 (80)
T PF13895_consen 73 STSVNVTV 80 (80)
T ss_dssp EEEEEEEE
T ss_pred eeeEEeeC
Confidence 56666654
No 201
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.87 E-value=7.1e-09 Score=77.00 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=53.2
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecC--------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED--------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 177 (540)
+.+.+|++|+|.|.+.+.+.+.+.|+++++.... .+++..... ......++|+|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~--~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN--LWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc--cCCCCeEEEEECCCCHHHCEE
Confidence 3567899999999998888899999976633211 112222211 112334589999999999999
Q ss_pred EEEEEEcCCce
Q psy670 178 YRCNACNSIGE 188 (540)
Q Consensus 178 Y~C~~~~~~~~ 188 (540)
|.|.+.+..++
T Consensus 80 Y~C~v~~~~~~ 90 (94)
T cd07690 80 YICEVEDKKEE 90 (94)
T ss_pred EEEEECCccce
Confidence 99999886553
No 202
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.86 E-value=1.7e-08 Score=71.78 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=49.9
Q ss_pred EEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 120 LVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 120 v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
+.|+|.. .++|+++|.|||+++++...... ..........++|.|.....+|++.|+|+|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~---~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ---QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc---ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 7899999 56899999999999999653211 111111234457999999999999999999998765
No 203
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.84 E-value=1.5e-08 Score=70.15 Aligned_cols=63 Identities=30% Similarity=0.612 Sum_probs=49.3
Q ss_pred CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
+|+++.|.|.+.+.+.+.+.|++++..+.. ...... ....|.|.++..+|+|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLSA-------SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEec-------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999988888899999999887762 111111 112899999999999999999988653
No 204
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.83 E-value=1e-07 Score=70.59 Aligned_cols=82 Identities=29% Similarity=0.607 Sum_probs=64.0
Q ss_pred eEEeeCCCeEEEEEEEEccCCCeEEEEEC-CEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHE-GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+..... ... ..+|.|.+++.+|+|.|.|.+.+..+...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~--~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR--SGS--NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE--cCC--eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 34567899999999999888889999998 88776444444322 221 44899999999999999999998888776
Q ss_pred EEEEEEE
Q psy670 399 ANLTLNI 405 (540)
Q Consensus 399 ~~~~l~V 405 (540)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 6666655
No 205
>smart00409 IG Immunoglobulin.
Probab=98.83 E-value=1e-07 Score=70.59 Aligned_cols=82 Identities=29% Similarity=0.607 Sum_probs=64.0
Q ss_pred eEEeeCCCeEEEEEEEEccCCCeEEEEEC-CEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHE-GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+..... ... ..+|.|.+++.+|+|.|.|.+.+..+...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~--~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR--SGS--NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE--cCC--eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 34567899999999999888889999998 88776444444322 221 44899999999999999999998888776
Q ss_pred EEEEEEE
Q psy670 399 ANLTLNI 405 (540)
Q Consensus 399 ~~~~l~V 405 (540)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 6666655
No 206
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.83 E-value=1.9e-08 Score=71.58 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=49.0
Q ss_pred cceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce
Q psy670 8 KSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 8 ~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 82 (540)
++|... |+|+ ++|.||||+++|..... ....+......++|+|...+.+|.+.|+|+|.|..+..
T Consensus 4 L~C~s~~skP~------a~i~W~k~~~~l~~~~~----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 4 LTCLSPRSKPA------ATLRWYRDRKELKGVIS----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEeCCCccCC------CeEEEEECCEECCCCcc----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 679877 7887 99999999999964321 11122123345689999999999999999999987653
No 207
>PHA03376 BARF1; Provisional
Probab=98.83 E-value=1.8e-07 Score=75.76 Aligned_cols=128 Identities=17% Similarity=0.295 Sum_probs=74.0
Q ss_pred eeecCCCCeEEEEEEecc---cCCCeEEEEeC----CEEee-cc-C-------ceEEEEecCCCeEEEEEEEeCCCCCCc
Q psy670 216 IIPNESGTLIQMKCKCSA---KPRPEVKWFKA----DKLVK-ES-S-------KIKIIVNEQDDTYEIICEITDPIGPDS 279 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~---~p~~~v~W~~~----~~~l~-~~-~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 279 (540)
.+....|+.+.|.|...- .+...|.|+|. ...+. .. . .++.....-......+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 345567999999998852 34557999994 22211 10 0 111001000111345899999999999
Q ss_pred EEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE
Q psy670 280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK 350 (540)
Q Consensus 280 g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~ 350 (540)
|.|+|.+..........-.+.+.. |..+...........-....+.|.+.|+|.|.+.|..+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~-------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeee-------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 999999987544333222232221 1111111111112225567899998889999999987644
No 208
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.82 E-value=2.4e-08 Score=69.07 Aligned_cols=63 Identities=32% Similarity=0.681 Sum_probs=49.8
Q ss_pred CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
+|+.++|.|.+.+.|.+.+.|++++..+.. ... ..... ..|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~--~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNR--LSASG----STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCE--EecCC----cEEEEeeCCcccCEEEEEEEecCCC
Confidence 478999999988889999999999988762 111 11112 2799999999999999999998754
No 209
>smart00409 IG Immunoglobulin.
Probab=98.81 E-value=1.1e-07 Score=70.55 Aligned_cols=81 Identities=30% Similarity=0.655 Sum_probs=62.9
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+...
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 4567899999999998877889999998 77776455554433211 45899999999999999999998777765
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 5566654
No 210
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.81 E-value=1.1e-07 Score=70.55 Aligned_cols=81 Identities=30% Similarity=0.655 Sum_probs=62.9
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+...
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 4567899999999998877889999998 77776455554433211 45899999999999999999998777765
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 5566654
No 211
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.81 E-value=5.1e-08 Score=72.49 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=54.7
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCE--EccCC--CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc-CCe
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGK--ELQQT--DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN-FHG 395 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n-~~g 395 (540)
+...+|+.+.|.|.. +.|.+.+.|++.+. ..... ...+... .+ ..|.|.+++.+|+|.|+|.|.+ ..+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~----~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TE----RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ec----CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 456789999999996 57889999998432 21110 1111111 11 1699999999999999999984 566
Q ss_pred eeEEEEEEEEE
Q psy670 396 ELNANLTLNIE 406 (540)
Q Consensus 396 ~~~~~~~l~V~ 406 (540)
.....++|.|.
T Consensus 79 ~~~~~~~l~v~ 89 (91)
T cd05871 79 QTLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEEe
Confidence 66667777764
No 212
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.80 E-value=2.5e-08 Score=73.90 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=55.9
Q ss_pred ccccCCCeEEEEEEEe------e-----cCCCceEEEeCCEeecCCCc-----eEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670 112 TIHQDGDLLVMECVLE------A-----SPMPDIIWYQGTKVIEDTGR-----IKMSKKSIGKDTYLLRLEINNPTKDDG 175 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~------~-----~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~ 175 (540)
..+.+|+++.|.|... + .....+.|+|++..+..... .++.... ..|.|.++..+|+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~-------~~Lwf~Pa~~eDS 82 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE-------DSIWFRPAELQDS 82 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC-------CEEEEEeCChhhC
Confidence 4577999999999861 1 12337999999755543321 1222111 1899999999999
Q ss_pred eEEEEEEEcCCceeEEEEEEEE
Q psy670 176 GNYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 176 G~Y~C~~~~~~~~~~~~~~l~v 197 (540)
|.|+|.+.|........+.|+|
T Consensus 83 G~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 83 GLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred eEEEEEECCCCcceEEEEEEEC
Confidence 9999999998877776666654
No 213
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.79 E-value=4.5e-08 Score=72.81 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=54.7
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCE--eec----CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE-c
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTK--VIE----DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC-N 184 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-~ 184 (540)
+...+|+++.|.|.. +.|.+.+.||+.+. ... ...+.... ...|.|.++..+|+|.|+|.+. +
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~---------~~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT---------ERGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe---------cCeEEEeeCChhHCEEEEEEEEcc
Confidence 346789999999997 57888999998432 211 11222211 1269999999999999999998 4
Q ss_pred CCceeEEEEEEEEe
Q psy670 185 SIGESNANIALNFQ 198 (540)
Q Consensus 185 ~~~~~~~~~~l~v~ 198 (540)
..+.....++|.|.
T Consensus 76 ~~~~~~~~~~l~v~ 89 (91)
T cd05871 76 SFSQTLAKYTLHVI 89 (91)
T ss_pred CCeEEEEEEEEEEe
Confidence 55556667777765
No 214
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.79 E-value=5.9e-08 Score=71.11 Aligned_cols=75 Identities=20% Similarity=0.430 Sum_probs=51.1
Q ss_pred EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEE
Q psy670 120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--NANIAL 195 (540)
Q Consensus 120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l 195 (540)
+.|.|.+.| .|.+.+.|+++|+.+..... ....... ......+.|.|.....+|.|.|+|.+.|..... ..+++|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999976 68889999999998854321 1111111 112334578899888889999999999876443 344444
No 215
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.77 E-value=1.4e-08 Score=70.48 Aligned_cols=63 Identities=22% Similarity=0.491 Sum_probs=46.0
Q ss_pred CCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 117 GDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 117 G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
|++++|.|.+ .+.+...+.|++++.............. .......|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTN---SVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEET---TTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecc---cceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 6677889999999876644332222211 1211225999999999999999986
No 216
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.77 E-value=7.5e-08 Score=72.87 Aligned_cols=81 Identities=16% Similarity=0.310 Sum_probs=54.7
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEee--------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
...+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++.... .......|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN----FSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc----CCCCeeEEEEccCCcccCEEEEEEE
Confidence 456889999999999988788899998633211 0112333211 1112347999999999999999999
Q ss_pred EcCCceeEEEEEEE
Q psy670 183 CNSIGESNANIALN 196 (540)
Q Consensus 183 ~~~~~~~~~~~~l~ 196 (540)
..... ....+.|.
T Consensus 82 ~~~~~-~~~~~~~~ 94 (95)
T cd05717 82 YTMPV-QTAKATVT 94 (95)
T ss_pred ecCCC-ceEEEEEE
Confidence 87643 34444443
No 217
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.76 E-value=0.00013 Score=83.16 Aligned_cols=343 Identities=13% Similarity=0.082 Sum_probs=199.4
Q ss_pred cccCCCeeEEEE--EEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCC
Q psy670 63 VQKSDSGEYKVI--AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGT 140 (540)
Q Consensus 63 ~~~~D~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~ 140 (540)
+...+.|.|... +.|..|..+.+..+.|..+-..+.+. .....+..|+++.|.-...+.+...+.|..++
T Consensus 1664 vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~--------aS~~~aavn~~V~fs~~lt~GS~vty~W~~gd 1735 (2740)
T TIGR00864 1664 LNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQ--------ASDNPAAVNALINLSAELAEGSGLQYRWFLEE 1735 (2740)
T ss_pred EecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEe--------ccCCcccCCCeEEEEEEecCCCCcEEEEEECC
Confidence 345788988886 45777887777777776544333322 22334567999999987777788899998765
Q ss_pred Eeec-CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE--EEcCCceeEEEEEEEEecCcCCCCCCCeeccCC--c
Q psy670 141 KVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN--ACNSIGESNANIALNFQGGENGAGFAPSFIEKP--R 215 (540)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~--~ 215 (540)
..-. .......+ +....|.|.-. +.|..+.....+.+.|...... ..|.... .
T Consensus 1736 G~s~~~s~p~~tH------------------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~G----L~i~~~~~~~ 1793 (2740)
T TIGR00864 1736 GDDLETSEPFMSH------------------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPISG----LKIRAADAGE 1793 (2740)
T ss_pred CCCcccCCCceEE------------------EccCCceEEEEEEEEccccccceeEEEEEEecccc----ceEecCCCCc
Confidence 3211 11110011 13457788665 4577777666777777753321 1221111 1
Q ss_pred eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE--EEEcCCCCe
Q psy670 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC--NVKNEFGES 293 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C--~~~~~~~~~ 293 (540)
...+..|..+.+.=.+.........|..++..-...... . .+..+.|.|+- .|.|..+..
T Consensus 1794 ~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v-------------~-----~Tf~~aG~ytV~L~AsN~vs~~ 1855 (2740)
T TIGR00864 1794 QNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHA-------------C-----MTFPDAGTFAIRLNASNAVSGK 1855 (2740)
T ss_pred ccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccccee-------------E-----EecCCCeEEEEEEEEEcccCcc
Confidence 112345667777665543344567787765431111110 1 23347888876 566888877
Q ss_pred eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE-EccCCCceEEEEEecCCeeEEE
Q psy670 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK-ELQQTDRISWNVTLKGDKYHIR 372 (540)
Q Consensus 294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
..+..+.|+... -.+........+..|+.++|.+.+...+...+.|..++. ....... . +
T Consensus 1856 ~~s~~~~VQe~I------~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~---------~----t 1916 (2740)
T TIGR00864 1856 SASREFFAEEPI------FGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPG---------P----R 1916 (2740)
T ss_pred eeeeeEEEEEec------ceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCC---------C----e
Confidence 777788887632 122222333456789999999998877788889987643 2211011 0 1
Q ss_pred EEEcCCCCCCCeeEE--EEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeee
Q psy670 373 LEVKDPRKEDTGLYK--CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLT 450 (540)
Q Consensus 373 L~i~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (540)
+. + +....|.|. -.|.|..+.......+.|..
T Consensus 1917 ~~-H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle------------------------------------------- 1950 (2740)
T TIGR00864 1917 FS-H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLE------------------------------------------- 1950 (2740)
T ss_pred EE-e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEE-------------------------------------------
Confidence 11 1 112345554 56788888877777766654
Q ss_pred eeeec-eeecCCc-EEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC-----eEEEEEEecCCeEEEEEEeeee
Q psy670 451 LSVVP-VIREVPK-VVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN-----KHVVHIEQVKDVSMNFELWLGI 521 (540)
Q Consensus 451 ~~~~p-~i~~~~~-~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~-----~~~~~~~~~~~g~y~c~~~~~~ 521 (540)
+- -+..... ...+..|+..+|.-.++..-+..+.|+.+-..+..+. ...+.......|.|+..+...|
T Consensus 1951 ---~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~A~N 2025 (2740)
T TIGR00864 1951 ---AVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLGAFN 2025 (2740)
T ss_pred ---eccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEccCCCcEEEEEEEEEc
Confidence 10 1111111 1125679999999999877677899997644333332 1234455567899998887544
No 218
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.75 E-value=1.2e-07 Score=71.82 Aligned_cols=83 Identities=16% Similarity=0.358 Sum_probs=56.0
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEc--------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
....+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++... ... .....|.|.+++.+|+|.|+|.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~-~~~--~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV-NFS--ANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE-cCC--CCeeEEEEccCCcccCEEEEEEE
Confidence 4566889999999999988888899998632211 111222221 111 12347999999999999999999
Q ss_pred EcCCeeeEEEEEEEE
Q psy670 391 KNFHGELNANLTLNI 405 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V 405 (540)
.+... ...++.|.|
T Consensus 82 ~~~~~-~~~~~~~~v 95 (95)
T cd05717 82 YTMPV-QTAKATVTV 95 (95)
T ss_pred ecCCC-ceEEEEEEC
Confidence 87653 355555543
No 219
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.75 E-value=7.1e-08 Score=71.67 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=52.9
Q ss_pred EeeCCCeEEEEEEEEccCCCeEEEEECCEEccC--------------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ--------------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
.+.+|+.++|.|.+.+.+.+.+.|++++..... ..++..... ........|+|.+++.+|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEEE
Confidence 467899999999999999999999977633211 111111110 00112347999999999999999
Q ss_pred EEEEcCCeee
Q psy670 388 CNIKNFHGEL 397 (540)
Q Consensus 388 C~a~n~~g~~ 397 (540)
|.+.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999987654
No 220
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.74 E-value=6.8e-08 Score=70.77 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=49.9
Q ss_pred ccceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce
Q psy670 7 LKSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 7 ~~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 82 (540)
-++|.+.| +|. +.++|+|+|+++... ........++......+.|.|...+.+|.|.|+|+|.|.....
T Consensus 3 ~L~C~v~g~~P~------~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 3 NLTCRARGAKPA------AEIIWFRDGEVLDGA-TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred EEEEEEeCccCC------CEEEEEECCEEccCc-eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 37899987 576 899999999988643 2222222333233345789999988999999999999876443
No 221
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.74 E-value=2.4e-08 Score=69.36 Aligned_cols=63 Identities=24% Similarity=0.530 Sum_probs=47.0
Q ss_pred CCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 326 GKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 326 g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
|++++|.|.+ .+.+...+.|++++..+........ ...+......|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNR--STNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEE--EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEe--ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 6778889999999886654433221 1222222224999999999999999986
No 222
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.74 E-value=4e-08 Score=72.80 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=52.3
Q ss_pred CccccCCCeEEEEEEE-ee----cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVL-EA----SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~-~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
+..+.+|.+..|.|.- .+ .+.+.+.|||++.++......... . ... ..|.|.++..+|+|.|+|.+.+.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~--~~~---~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-L--KGS---TYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-c--CCC---CEEEEEEcChhhCEEEEEEEEEe
Confidence 3567789999999974 33 366689999999988644322111 0 011 16999999999999999999987
Q ss_pred Cce
Q psy670 186 IGE 188 (540)
Q Consensus 186 ~~~ 188 (540)
.+.
T Consensus 78 ~~g 80 (95)
T cd05897 78 HEG 80 (95)
T ss_pred eCC
Confidence 654
No 223
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.74 E-value=3.3e-08 Score=73.17 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=53.9
Q ss_pred eEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEcc--CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 320 IRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQ--QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
...+.+|+.+.|.|.. .|.|.+.+.|++++.++. .+.+.. ....+| .|.|.+++.+|+|.|+|.|+|....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~-~~~~~G-----~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF-VSQTNG-----NLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE-EeCCCC-----cEEEeecCHhhCceeEEEEEecccC
Confidence 4567889999999975 478999999999987642 223221 111223 7999999999999999999997644
Q ss_pred e
Q psy670 397 L 397 (540)
Q Consensus 397 ~ 397 (540)
.
T Consensus 86 ~ 86 (96)
T cd05727 86 K 86 (96)
T ss_pred C
Confidence 3
No 224
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.73 E-value=5.8e-08 Score=71.96 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=52.2
Q ss_pred EeeCCCeEEEEEEE-E----ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 322 SEQGGKLVVMECKV-K----AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 322 ~~~~g~~v~l~C~~-~----~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
.+..|.+..|.|.- . ..+.++++|+||+.++....... ....+.. .|.|.+++.+|+|.|+|.|.+.+|.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~-~~~~~~~----~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKF-YSLKGST----YLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcce-EecCCCC----EEEEEEcChhhCEEEEEEEEEeeCC
Confidence 45678899999972 2 23567999999999987544321 1111222 6999999999999999999998765
Q ss_pred e
Q psy670 397 L 397 (540)
Q Consensus 397 ~ 397 (540)
.
T Consensus 81 ~ 81 (95)
T cd05897 81 K 81 (95)
T ss_pred E
Confidence 4
No 225
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.69 E-value=3.1e-08 Score=73.12 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=54.4
Q ss_pred CCccccCCCeEEEEEEE-eecCCCceEEEeCCEe-ecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEEEEcCC
Q psy670 110 KPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKV-IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCNACNSI 186 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~ 186 (540)
..+.+.+|+.+.|.|.. .|.|.+.|.|++++.. +..+.+..+... ..|.|.+++.+|.| .|.|.|.+..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~--------GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN--------GNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC--------ceEEEEEEehhhCCCCeEEEEEccc
Confidence 45678999999999974 8999999999987644 344444443321 28999999999999 8999999865
No 226
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.68 E-value=0.0011 Score=76.15 Aligned_cols=352 Identities=13% Similarity=0.088 Sum_probs=200.0
Q ss_pred cCCCeeEEEEE--EccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEe
Q psy670 65 KSDSGEYKVIA--KNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKV 142 (540)
Q Consensus 65 ~~D~G~Y~C~~--~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~ 142 (540)
....|.|...+ .|..|....++.|.|..+-.-+.+....+ .....+..|..+.|.-.+.......+.|..++..
T Consensus 1750 f~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~----~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~ 1825 (2740)
T TIGR00864 1750 FPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADA----GEQNFFAADSSVCFQGELATGTNVSWCWAIDGGS 1825 (2740)
T ss_pred ccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCC----CcccceecCcEEEEEEEccCCCeeEEEEEeCCCC
Confidence 55678898864 57777777777777776543444432211 1112455678888877764344447888776432
Q ss_pred ecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE--EEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecC
Q psy670 143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN--ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220 (540)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~ 220 (540)
-..+... . .+..+.|.|+-. +.|..+.......+.|++... .+........+.
T Consensus 1826 s~~gk~v--------------~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~------~L~L~as~~~~~ 1880 (2740)
T TIGR00864 1826 SKMGKHA--------------C-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF------GLELKASKKIAA 1880 (2740)
T ss_pred cccccee--------------E-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc------eEEEeccccccc
Confidence 1111100 1 235678999776 457777666666677765211 222233344566
Q ss_pred CCCeEEEEEEecccCCCeEEEEeCCEE-eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE--EEEEcCCCCeeeeE
Q psy670 221 SGTLIQMKCKCSAKPRPEVKWFKADKL-VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR--CNVKNEFGESNANL 297 (540)
Q Consensus 221 ~g~~~~l~C~~~~~p~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~ 297 (540)
.|+.++|.+.....+...+.|...+.. ........+ . +. ....|.|. -.+.|..+.....+
T Consensus 1881 ~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~-----------~---Hs--Y~~~G~Y~VtV~A~N~Vs~~~a~~ 1944 (2740)
T TIGR00864 1881 IGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRF-----------S---HS--FPRVDDHMVNLRAKNEVSCAQANL 1944 (2740)
T ss_pred CCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeE-----------E---ee--cCCCCcEEEEEEEEeccceeeeeE
Confidence 799999999998777888999886432 211010011 1 11 11334454 45667777766666
Q ss_pred EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcC
Q psy670 298 NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377 (540)
Q Consensus 298 ~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 377 (540)
.+.|..... .-. +...-...+..|+..++.-.+....+..+.|+.+-..+..+..+. ..+. ..+.
T Consensus 1945 ~V~Vle~V~----gL~-I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~----~~G~----~vty-- 2009 (2740)
T TIGR00864 1945 HIEVLEAVR----GLQ-IPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVI----HMGK----DVSY-- 2009 (2740)
T ss_pred EEEEEEecc----ceE-ecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCccee----ecCC----ceEE--
Confidence 666654211 111 111111125679999999998766677899987644333222211 0111 1222
Q ss_pred CCCCCCeeEE--EEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeec
Q psy670 378 PRKEDTGLYK--CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVP 455 (540)
Q Consensus 378 ~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 455 (540)
.....|.|+ -+|.|..+.......+.|+..- ..-
T Consensus 2010 -~~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i-------------------------------------------~~~ 2045 (2740)
T TIGR00864 2010 -TAEAAGLLEIQLGAFNALGAENITLQLEAQDAL-------------------------------------------MDA 2045 (2740)
T ss_pred -ccCCCcEEEEEEEEEcccCcccccEEEEEEehe-------------------------------------------eeE
Confidence 123578877 4678888877666666665400 000
Q ss_pred eeecCCcEEEecCCCeEEEEEEEeeecC-CceEEEec-CeecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670 456 VIREVPKVVTISKKKTVVIECKVMSMYE-PSVTWMKE-KNTVKEDNKHVVHIEQVKDVSMNFELWLGIV 522 (540)
Q Consensus 456 ~i~~~~~~~~~~~g~~~~l~C~v~g~p~-~~v~W~~~-~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~ 522 (540)
.+...| .....+..+.|.|.+...+. ..+.|=++ |......+...+.-.....|.|..++...|.
T Consensus 2046 ~L~~~p--~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sHtY~r~G~Y~V~V~a~N~ 2112 (2740)
T TIGR00864 2046 ALQAGP--QDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEHEYLHPGDYRVQVNASNL 2112 (2740)
T ss_pred EEeecC--cceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEEEecCCccEEEEEEEEcc
Confidence 111112 23455888999999865453 58999776 5554444445555666778999999985443
No 227
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.67 E-value=6.2e-08 Score=71.53 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=56.0
Q ss_pred CceEEeeCCCeEEEEEE-EEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCe-eEEEEEEcCCe
Q psy670 318 PKIRSEQGGKLVVMECK-VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFHG 395 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~-~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g 395 (540)
.....+.+|+.+.|.|. ..|.|.|.|.|++++...... ..+.....+| .|.|.++..+|+| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~G-----nL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNG-----NLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCc-----eEEEEEEehhhCCCCeEEEEEcccc
Confidence 35677889999999997 689999999999876553332 2233333333 7999999999999 79999999764
Q ss_pred e
Q psy670 396 E 396 (540)
Q Consensus 396 ~ 396 (540)
.
T Consensus 84 ~ 84 (95)
T cd05845 84 R 84 (95)
T ss_pred c
Confidence 3
No 228
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.66 E-value=4.2e-07 Score=67.49 Aligned_cols=72 Identities=15% Similarity=0.320 Sum_probs=52.7
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEee--------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN 181 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 181 (540)
..+.+.+|+++.|+|.+.+.....+.|++.+..+ ..+.|+..... .....+|.|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~----~~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF----SSNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC----CCCEEEEEECcCCcccCEEEEEE
Confidence 4567889999999999987766678888755332 23445554421 12345899999999999999999
Q ss_pred EEcC
Q psy670 182 ACNS 185 (540)
Q Consensus 182 ~~~~ 185 (540)
+...
T Consensus 81 v~t~ 84 (95)
T cd05881 81 LYTD 84 (95)
T ss_pred EEcc
Confidence 9753
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.64 E-value=1.4e-07 Score=68.23 Aligned_cols=77 Identities=18% Similarity=0.335 Sum_probs=56.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC-Ccee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS-IGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 189 (540)
...+..|+++.|.|...+ +.+.+.|+++|..+..+.+...... .|.|..++..|+|.|.|.+.-. ....
T Consensus 5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~---------GLlI~~~~~~dsG~Y~C~s~E~gf~~~ 74 (85)
T cd05872 5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTD---------GLLILVTSPEHSGTYRCYSEEEGFQQL 74 (85)
T ss_pred EEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCC---------CCEEEECCHhhCEEEEEEEecCCCeEE
Confidence 456789999999999844 4679999999999876555544322 5889999999999999998632 2223
Q ss_pred EEEEEEEE
Q psy670 190 NANIALNF 197 (540)
Q Consensus 190 ~~~~~l~v 197 (540)
...+.|.|
T Consensus 75 ~~~y~l~v 82 (85)
T cd05872 75 VASYSLNV 82 (85)
T ss_pred EEEEEEEE
Confidence 44444444
No 230
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.64 E-value=2.5e-07 Score=68.62 Aligned_cols=81 Identities=16% Similarity=0.360 Sum_probs=58.0
Q ss_pred EEeeCCCeEEEEEEEE------c-----cCCCeEEEEECCEEccCCCceE---EEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670 321 RSEQGGKLVVMECKVK------A-----KPMPEIVWFHEGKELQQTDRIS---WNVTLKGDKYHIRLEVKDPRKEDTGLY 386 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~------~-----~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y 386 (540)
..+.+|+.+.|.|... + .....+.|+|++..+....... .++...+. .|.|.++..+|+|.|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~----~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED----SIWFRPAELQDSGLY 85 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC----EEEEEeCChhhCeEE
Confidence 5577899999999861 1 1234799999976555433211 12233343 899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEE
Q psy670 387 KCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l~V 405 (540)
+|.+.|.......++.|+|
T Consensus 86 ~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEECCCCcceEEEEEEEC
Confidence 9999998877777776654
No 231
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.63 E-value=6e-07 Score=64.11 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=54.4
Q ss_pred EEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEE
Q psy670 329 VVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIE 406 (540)
Q Consensus 329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 406 (540)
+.|+|.+.| .|.+.|+|++++.++...... ......+....++|.+..-...|...|+|+|.|..-. ...+..|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999987 688899999999999764321 1122344556778999776666666899999997532 3555556554
No 232
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.62 E-value=3.3e-07 Score=70.98 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=56.1
Q ss_pred CCCeEEEEEEEeecC------CCceEEEeCC-----E-ee--cCCCceEE------EEeecCcceEEEEEEEcCCCCCCC
Q psy670 116 DGDLLVMECVLEASP------MPDIIWYQGT-----K-VI--EDTGRIKM------SKKSIGKDTYLLRLEINNPTKDDG 175 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p------~~~v~W~~~~-----~-~~--~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~ 175 (540)
.|++|+|.|.+...+ ...+.|+|.. . .+ ........ ...........++|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999996543 4589999962 1 11 11111110 000001123456999999999999
Q ss_pred eEEEEEEEcCCceeEEEEEEEEec
Q psy670 176 GNYRCNACNSIGESNANIALNFQG 199 (540)
Q Consensus 176 G~Y~C~~~~~~~~~~~~~~l~v~~ 199 (540)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998877778888888864
No 233
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.56 E-value=2e-07 Score=67.07 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=47.0
Q ss_pred CeEEeCCceEEeeCCCeEEEEEEEEccC-CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 312 PTFIEKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
|.+...+...... +..++|+|.+.+.+ .+.+.|+ +.... ............+.|.|.++..+|.|.|+|.|
T Consensus 2 P~I~~~~~~~~~~-~~~~~l~C~~~~~~~~~~~~W~-~~~~~------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 2 PQISVPPPPVVTS-GGSVTLTCSAEGGPPPPSISWY-DSNPS------FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp SEEEEESTSEEET-TEEEEEEEEESSEESSEEEEEE-TEEEE------EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred CEEEEcCCCcEee-ceeEEEEEEEccccCCeEEEEE-ecCCc------eeeeeeeccceeeEEEEccCCHHhCcEEEEEE
Confidence 3444444433333 33399999999877 7799999 11111 11111122233448999999999999999999
Q ss_pred Ec
Q psy670 391 KN 392 (540)
Q Consensus 391 ~n 392 (540)
+|
T Consensus 74 ~N 75 (75)
T PF13927_consen 74 SN 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 87
No 234
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.55 E-value=1.2e-06 Score=64.99 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=52.3
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEc--------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
..+.+.+|+++.|+|.+.+.....+.|++.+..+ ..+.++.... ..+ ...+|.|++++.+|+|.|.|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~-~~~--~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVN-FSS--NELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEe-CCC--CEEEEEECcCCcccCEEEEEEE
Confidence 3467889999999999998766678887765332 2344554331 122 2447999999999999999999
Q ss_pred EcC
Q psy670 391 KNF 393 (540)
Q Consensus 391 ~n~ 393 (540)
...
T Consensus 82 ~t~ 84 (95)
T cd05881 82 YTD 84 (95)
T ss_pred Ecc
Confidence 653
No 235
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.50 E-value=2.8e-06 Score=60.74 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=53.9
Q ss_pred EEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEe
Q psy670 225 IQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIE 302 (540)
Q Consensus 225 ~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~ 302 (540)
+.|.|.+.| .|++.|.|++++.++...... ...........++|.+..-..+|...|+|+|.|..-. ......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999987 899999999999998654321 1122234556678888777777777999999986432 3444445543
No 236
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.49 E-value=1.2e-06 Score=67.88 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=55.1
Q ss_pred CCCeEEEEEEEeecC------CCceEEEeCCE----e----ecCC----------CceEEEEeecCcceEEEEEEEcCCC
Q psy670 116 DGDLLVMECVLEASP------MPDIIWYQGTK----V----IEDT----------GRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p------~~~v~W~~~~~----~----~~~~----------~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
.|++++|.|.+...| ...+.|+|... . +... .++.+. ......++|.|.+++
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~~sL~I~~v~ 76 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR----RAHDLDASLVITDLR 76 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec----CCCCCcEEEEEccCC
Confidence 489999999986553 34699999531 0 1110 111111 111224589999999
Q ss_pred CCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670 172 KDDGGNYRCNACNSIGESNANIALNFQG 199 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 199 (540)
.+|+|.|.|.+.+..+.....+.|.|.+
T Consensus 77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 77 LEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred hHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999998888788888888764
No 237
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.48 E-value=1e-06 Score=67.06 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=50.9
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEe-----e---cC-----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKV-----I---ED-----------TGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~-----~---~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
.|..+.+|+++.|.|.........+.|||+... + .. ..|..+.. ..+|.|.++
T Consensus 6 ~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~--------ngSL~I~~v 77 (105)
T cd05774 6 VPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP--------NGSLLIQNV 77 (105)
T ss_pred cCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC--------CCcEEEecC
Confidence 345678999999999753333338999996321 1 00 01111111 128999999
Q ss_pred CCCCCeEEEEEEEcCCc-eeEEEEEEE
Q psy670 171 TKDDGGNYRCNACNSIG-ESNANIALN 196 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~-~~~~~~~l~ 196 (540)
+.+|+|.|+|.+.+... .....+.|.
T Consensus 78 ~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 78 TQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 99999999999988763 344444443
No 238
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.47 E-value=1.7e-06 Score=66.73 Aligned_cols=82 Identities=22% Similarity=0.432 Sum_probs=54.4
Q ss_pred CCCeEEEEEEEeecC------------CCceEEEeC--CE---eec-CC----------CceEEEEeecCcceEEEEEEE
Q psy670 116 DGDLLVMECVLEASP------------MPDIIWYQG--TK---VIE-DT----------GRIKMSKKSIGKDTYLLRLEI 167 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p------------~~~v~W~~~--~~---~~~-~~----------~~~~~~~~~~~~~~~~~~L~i 167 (540)
.|++++|.|.+.... .+.|.|+|. +. .+. .. .|+.+... ......++|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~--~~~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNY--PAIPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEeccc--CCCCCCcEEEE
Confidence 489999999995432 358999984 21 111 11 12222110 01223469999
Q ss_pred cCCCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670 168 NNPTKDDGGNYRCNACNSIGESNANIALNFQG 199 (540)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 199 (540)
.+++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999999998766777777777763
No 239
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.46 E-value=2.3e-06 Score=66.30 Aligned_cols=82 Identities=23% Similarity=0.491 Sum_probs=55.0
Q ss_pred CCCeEEEEEEEeecC----------CCceEEEeCC--Eee----cCCC----------ceEEEEeecCcceEEEEEEEcC
Q psy670 116 DGDLLVMECVLEASP----------MPDIIWYQGT--KVI----EDTG----------RIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p----------~~~v~W~~~~--~~~----~~~~----------~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
.|++++|.|.+...+ ...+.|+|.. ... .... |+.+... ......++|+|.+
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~--~~~~~~asL~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNY--PENRGDASLEISR 78 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccC--CCCCCcEEEEECC
Confidence 489999999996543 2469999952 111 0111 1111100 1223446899999
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670 170 PTKDDGGNYRCNACNSIGESNANIALNFQG 199 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 199 (540)
++.+|+|.|.|.+..........+.|.|.+
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999998766778888888764
No 240
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.46 E-value=1.2e-06 Score=65.40 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=53.6
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
.|.+...|. ..+..|+.|+|.|... .+...+.|+++|....... .........|.|.+++.+|+|.|+|..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-------~~~~~~~~~f~i~~v~~~~~G~Y~C~~ 72 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-------PPEPQNKAKFFIPSMKREHAGRYRCYY 72 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-------cCCCceeEEEEccCCChhHCEEEEEEE
Confidence 344544443 4577999999999885 6677899999987543211 011223447999999999999999999
Q ss_pred EcC
Q psy670 391 KNF 393 (540)
Q Consensus 391 ~n~ 393 (540)
.+.
T Consensus 73 ~~~ 75 (91)
T cd05751 73 RSG 75 (91)
T ss_pred ECC
Confidence 986
No 241
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.43 E-value=2.7e-06 Score=65.85 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=56.2
Q ss_pred CCCeEEEEEEEEccC------CCeEEEEECC-----E-Ecc--CCCc------eEEEEEe-cCCeeEEEEEEcCCCCCCC
Q psy670 325 GGKLVVMECKVKAKP------MPEIVWFHEG-----K-ELQ--QTDR------ISWNVTL-KGDKYHIRLEVKDPRKEDT 383 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p------~~~i~W~~~~-----~-~~~--~~~~------~~~~~~~-~~~~~~~~L~i~~~~~~d~ 383 (540)
.|++++|.|.....+ ...|.|++.. . .+. .... +...... .......+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999988653 4589999862 1 010 1111 1111110 1112345899999999999
Q ss_pred eeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 384 GLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 384 G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877788888888875
No 242
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.43 E-value=1.4e-06 Score=63.02 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=54.8
Q ss_pred eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--
Q psy670 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-- 397 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-- 397 (540)
...+..|+++.|.|...+. .+.+.|+++|..+..+.++.. ... -|.|..++.+|+|.|.|.+.- .|-.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~--~~~------GLlI~~~~~~dsG~Y~C~s~E-~gf~~~ 74 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV--GTD------GLLILVTSPEHSGTYRCYSEE-EGFQQL 74 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE--eCC------CCEEEECCHhhCEEEEEEEec-CCCeEE
Confidence 4567889999999998654 669999999999876544322 222 377889999999999999863 3433
Q ss_pred EEEEEEEE
Q psy670 398 NANLTLNI 405 (540)
Q Consensus 398 ~~~~~l~V 405 (540)
-.+..|.|
T Consensus 75 ~~~y~l~v 82 (85)
T cd05872 75 VASYSLNV 82 (85)
T ss_pred EEEEEEEE
Confidence 33444443
No 243
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.43 E-value=2.6e-06 Score=65.19 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=50.8
Q ss_pred CCeEEEEEEEeecC---CCceEEEeCCE--ee---cCC------------CceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 117 GDLLVMECVLEASP---MPDIIWYQGTK--VI---EDT------------GRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 117 G~~v~l~C~~~~~p---~~~v~W~~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
|++++|.|.+.... ...+.|++... .+ ..+ .|..+... ......++|.|.+++.+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKD--AIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecc--cccCCcEEEEEEcCChhhCE
Confidence 78899999985322 12688988541 11 000 11111110 11123458999999999999
Q ss_pred EEEEEEEcCCceeEEEEEEEE
Q psy670 177 NYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 177 ~Y~C~~~~~~~~~~~~~~l~v 197 (540)
.|+|.+.+..+.....+.|.|
T Consensus 79 ~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEecCCcEEEEEEEEEE
Confidence 999999987777777777765
No 244
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.42 E-value=1e-06 Score=66.76 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=55.0
Q ss_pred cCCCeEEEEEEEeec-CC-CceEEEeCCEeecCCCc-eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 115 QDGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTGR-IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 115 ~~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
..|+.+.|.|.+.|+ |. ..+.|+++|..+..... ........+.....+.|.|.....++.|.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999887 64 58999999998865543 223333334445566788888888899999999998754
No 245
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.42 E-value=4.1e-06 Score=65.12 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=51.2
Q ss_pred CceEEeeCCCeEEEEEEEEccC----CCeEEEEE---------------CCEEccC-CCce--EEEEEecCCeeEEEEEE
Q psy670 318 PKIRSEQGGKLVVMECKVKAKP----MPEIVWFH---------------EGKELQQ-TDRI--SWNVTLKGDKYHIRLEV 375 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p----~~~i~W~~---------------~~~~~~~-~~~~--~~~~~~~~~~~~~~L~i 375 (540)
+....+..|+.+.|.|...... ...|.|.+ +|..... ...+ +.....+......+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3456688999999999987632 34899944 2222211 1111 11111122223348999
Q ss_pred cCCCCCCCeeEEEEEEcCCeee
Q psy670 376 KDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 376 ~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
.+++.+|.|.|+|.+.|..+..
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcC
Confidence 9999999999999999976543
No 246
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.39 E-value=3.2e-06 Score=61.63 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=47.5
Q ss_pred EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
+.|.|.+.+ +|.+.+.|+++++.+.... ........+.....+.|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999955 5888999999999886433 1111111122234557888777778889999999987643
No 247
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.38 E-value=2.4e-06 Score=66.58 Aligned_cols=75 Identities=20% Similarity=0.393 Sum_probs=53.3
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE---c-----------cCCCceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE---L-----------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 383 (540)
+....+.+|++++|.|.+.+.+...+.|++.... . ....++.. .........+|.|.+++.+|+
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSA--TLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEE--EEcccCCEEEEEECCCCHHHC
Confidence 4556788999999999998777889999985321 0 01122222 222222345899999999999
Q ss_pred eeEEEEEEcCC
Q psy670 384 GLYKCNIKNFH 394 (540)
Q Consensus 384 G~Y~C~a~n~~ 394 (540)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998764
No 248
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.38 E-value=4.1e-06 Score=61.02 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=48.7
Q ss_pred EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
+.|+|.+.| +|.+.|+|+++|+.+..... ....... +.....+.|.+.....+|+..|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999965 58889999999998865432 2222222 12333467888777788889999999987643
No 249
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.37 E-value=2e-06 Score=67.12 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=51.7
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEe---e-----------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKV---I-----------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.+...+.|||.... . ....++.+... .....++|.|.+++.+|+|
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD---KSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc---ccCCEEEEEECCCCHHHCE
Confidence 45688999999999997767779999985321 0 01223332221 1224568999999999999
Q ss_pred EEEEEEEcCC
Q psy670 177 NYRCNACNSI 186 (540)
Q Consensus 177 ~Y~C~~~~~~ 186 (540)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998654
No 250
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.37 E-value=2.7e-06 Score=62.05 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=46.3
Q ss_pred EEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCe--eEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 329 VVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDK--YHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+.|.|.+.+ +|.+.|.|+++|..+.... .......++. ..+.|.+.....++.+.|+|+|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999987 5888999999999986433 1122222222 2346777766666778999999998654
No 251
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.37 E-value=3.6e-06 Score=62.83 Aligned_cols=73 Identities=15% Similarity=0.285 Sum_probs=52.6
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
|.+...+. ..+..|++++|+|... .+...+.|+++|....... .........+.|.+++.+|+|.|+|...
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-------PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-------cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 44444443 3567899999999885 5677899999987543210 0123334579999999999999999998
Q ss_pred cC
Q psy670 288 NE 289 (540)
Q Consensus 288 ~~ 289 (540)
+.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 75
No 252
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.35 E-value=3.8e-06 Score=61.21 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=50.1
Q ss_pred ccccceeeeCc-ceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCc
Q psy670 5 KELKSYTLEGE-PTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNG 80 (540)
Q Consensus 5 ~~~~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~ 80 (540)
|.-++|.+.|. |. +.|+|+|||+++..... .+....++......+.|.|.....+|...|+|++.+...
T Consensus 1 ~~~LtC~a~g~~P~------~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 1 KAKLRCTSSGSKPA------ANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred CEEEEEEecCccCC------CEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 34578999964 76 89999999999875432 333333332444567888878788888999999998764
No 253
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.35 E-value=8.5e-07 Score=63.75 Aligned_cols=57 Identities=19% Similarity=0.468 Sum_probs=40.2
Q ss_pred EEEEEEecccC-CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670 225 IQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288 (540)
Q Consensus 225 ~~l~C~~~~~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 288 (540)
+.|.|.+.+.+ .+.+.|+ ...... ...........+.|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~------~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSF------NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEE------EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCce------eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999999876 7889999 111111 111112223345899999999999999999986
No 254
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.33 E-value=2.6e-06 Score=64.03 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=48.8
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCC--------CceEE-----EEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDT--------GRIKM-----SKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--------~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
|++|+|.|.........+.|+++....... ..... .+.....+ .+|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 789999998865556689999965332110 00000 00001111 489999999999999999998
Q ss_pred cCCce-eEEEEEEE
Q psy670 184 NSIGE-SNANIALN 196 (540)
Q Consensus 184 ~~~~~-~~~~~~l~ 196 (540)
...+. ....+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 77643 34444443
No 255
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.33 E-value=5.7e-06 Score=63.25 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=50.6
Q ss_pred CCeEEEEEEEEccC---CCeEEEEECCE--Ec---------cC--CCce--EEEEEec-CCeeEEEEEEcCCCCCCCeeE
Q psy670 326 GKLVVMECKVKAKP---MPEIVWFHEGK--EL---------QQ--TDRI--SWNVTLK-GDKYHIRLEVKDPRKEDTGLY 386 (540)
Q Consensus 326 g~~v~l~C~~~~~p---~~~i~W~~~~~--~~---------~~--~~~~--~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y 386 (540)
|++++|.|...... ...+.|++... .+ .. ...+ +.....+ ......+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67899999986322 23678887542 11 00 0001 1111110 111234899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEE
Q psy670 387 KCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l~V 405 (540)
+|.+.+..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887777877776
No 256
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.32 E-value=2.1e-06 Score=65.05 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=52.1
Q ss_pred eCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCc-eEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 324 QGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDR-ISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
..|+.+.|.|.+.|+ |. ..|+|+++|..+..... .......++. ...+.|.+......+.+.|+|+|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 368899999999997 53 58999999999876543 1111122222 22346788777777999999999997653
No 257
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.31 E-value=5.8e-06 Score=62.97 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=49.8
Q ss_pred CeEEEEEEEeecC---CCceEEEeCCEe----e---c--------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670 118 DLLVMECVLEASP---MPDIIWYQGTKV----I---E--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179 (540)
Q Consensus 118 ~~v~l~C~~~~~p---~~~v~W~~~~~~----~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 179 (540)
++|+|.|.+...+ ...+.|+|.... + . ...+.+.... ......++|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFL--NSSLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEe--CCCCCceEEEEccCCcccCEEEE
Confidence 4689999996544 337999995421 0 0 0001111100 11113458999999999999999
Q ss_pred EEEEc-CCceeEEEEEEEE
Q psy670 180 CNACN-SIGESNANIALNF 197 (540)
Q Consensus 180 C~~~~-~~~~~~~~~~l~v 197 (540)
|.+.. ..|.....+.|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 99875 5677777777766
No 258
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.31 E-value=0.00037 Score=64.59 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=100.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCce--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--e
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--E 238 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~ 238 (540)
.|.|..++...+|.|+-.+-+..+. ....++|.... +|.+...+. .+.+|+...-.|.+.. +|+. .
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr-------~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~ 253 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFR-------RPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAA 253 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEec-------CCcccccCC--ccccCCCceEEEEeeeecCCCceE
Confidence 6999999999999999998776553 34456666654 555544333 4567999999999987 5543 5
Q ss_pred EEEEeCCEEeeccCceEEEEec--CCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeE
Q psy670 239 VKWFKADKLVKESSKIKIIVNE--QDDTYEIICEITDPIGPDS-GTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTF 314 (540)
Q Consensus 239 v~W~~~~~~l~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~ 314 (540)
+.||.|+..+............ ++....+++++.....+.. -..+|.+.-..... ...+.-.+. +. ...+|.+
T Consensus 254 lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~--P~-VY~~P~I 330 (466)
T PHA03270 254 FRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGA--PT-VLPRPTI 330 (466)
T ss_pred EEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeeccccc--Cc-cccCCeE
Confidence 9999999988543322222222 3334445665554333222 37899887433222 222211111 00 0113333
Q ss_pred EeCCceEEeeCCCeEEEEEEEEccCC-CeEEEEECCEEccCCC
Q psy670 315 IEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTD 356 (540)
Q Consensus 315 ~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~ 356 (540)
.. .+..|. ..|.+..-|. ..+.|+.++......+
T Consensus 331 sv-----~F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~ 365 (466)
T PHA03270 331 EM-----EFGGDE---AVCTAACVPEGVTLAWLLGADPAPAEK 365 (466)
T ss_pred EE-----EEeCCE---EEEeccccCCCCEEEEEecCCCCCCcc
Confidence 22 233333 2388876664 4789998876665433
No 259
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.31 E-value=1e-05 Score=62.54 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=55.5
Q ss_pred CCCeEEEEEEEEccC------CCeEEEEECCEE-------c-cCC------Cce--EEEEEecCCeeEEEEEEcCCCCCC
Q psy670 325 GGKLVVMECKVKAKP------MPEIVWFHEGKE-------L-QQT------DRI--SWNVTLKGDKYHIRLEVKDPRKED 382 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p------~~~i~W~~~~~~-------~-~~~------~~~--~~~~~~~~~~~~~~L~i~~~~~~d 382 (540)
.|++++|.|.....| ...|.|++.... + ... ..+ +..... ......+|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence 388999999987653 347999985311 0 000 000 111111 11123489999999999
Q ss_pred CeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 383 TGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 383 ~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+|.|.|.+.+..+.....+.|.|..
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999888888888888875
No 260
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.30 E-value=8.4e-06 Score=62.58 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=54.1
Q ss_pred CCCeEEEEEEEeecC-------CCceEEEeCC-----Eee----cCC----------CceEEEEeecCcceEEEEEEEcC
Q psy670 116 DGDLLVMECVLEASP-------MPDIIWYQGT-----KVI----EDT----------GRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p-------~~~v~W~~~~-----~~~----~~~----------~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
.|++++|.|.+.-.| .+.+.|+|.. ... ..+ +|..+..+ ......++|.|.+
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~--~~~~~~asL~i~n 78 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGY--PKNRYNASLVLSR 78 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecC--CCCCceEEEEECC
Confidence 378899999975322 3579999841 111 111 12222211 1223456999999
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670 170 PTKDDGGNYRCNACNSIGESNANIALNFQG 199 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 199 (540)
++.+|+|.|.|.+..........+.|.|.+
T Consensus 79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999998666667788887763
No 261
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.30 E-value=5.2e-06 Score=64.03 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=53.4
Q ss_pred CCCeEEEEEEEEccC------------CCeEEEEECC--EE---cc-C------CCce--EEEEEe-cCCeeEEEEEEcC
Q psy670 325 GGKLVVMECKVKAKP------------MPEIVWFHEG--KE---LQ-Q------TDRI--SWNVTL-KGDKYHIRLEVKD 377 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p------------~~~i~W~~~~--~~---~~-~------~~~~--~~~~~~-~~~~~~~~L~i~~ 377 (540)
.|++++|.|...... .+.|.|++-. .. +. . ...+ +..... .......+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999987532 3589999842 10 10 0 0011 111111 0011234899999
Q ss_pred CCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 378 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
++.+|+|.|.|.+.+........+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998766777777777764
No 262
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.29 E-value=5e-06 Score=63.27 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=51.3
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEcc--------CC-C--------ceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ--------QT-D--------RISWNVTLKGDKYHIRLEVKDPRKEDT 383 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~--------~~-~--------~~~~~~~~~~~~~~~~L~i~~~~~~d~ 383 (540)
..+.+|+++.|.|.........+.|+|+..... .. . .-+.....++ +|.|.+++.+|+
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v~~~D~ 82 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNVTQKDT 82 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecCCcccC
Confidence 346789999999975433344899999632110 00 0 0011111112 899999999999
Q ss_pred eeEEEEEEcCC-eeeEEEEEEEE
Q psy670 384 GLYKCNIKNFH-GELNANLTLNI 405 (540)
Q Consensus 384 G~Y~C~a~n~~-g~~~~~~~l~V 405 (540)
|.|+|.+.+.. ......+.|.|
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEEC
Confidence 99999999977 45555555543
No 263
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.29 E-value=8e-06 Score=62.21 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=51.0
Q ss_pred CeEEEEEEEEccC---CCeEEEEECCEE----c-----------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 327 KLVVMECKVKAKP---MPEIVWFHEGKE----L-----------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 327 ~~v~l~C~~~~~p---~~~i~W~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
++++|.|.....+ ...|.|++.... + ....+.+.....+. ....+|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEE
Confidence 4689999988654 347999986431 0 01001111111111 134589999999999999999
Q ss_pred EEEc-CCeeeEEEEEEEE
Q psy670 389 NIKN-FHGELNANLTLNI 405 (540)
Q Consensus 389 ~a~n-~~g~~~~~~~l~V 405 (540)
.+.. ..|.....+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9875 5677788887776
No 264
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.29 E-value=0.00022 Score=66.69 Aligned_cols=164 Identities=22% Similarity=0.221 Sum_probs=98.1
Q ss_pred EEEEEcccccCCCeeEEEEEEccCcceeeeEEEEE--eecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNF--SEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP 132 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v--~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~ 132 (540)
..|+|..++..++|.|+=+..+..+.......++| ...| .+ ...+-.+.+|+...-.|.+..+ |..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~P-sv----------sv~~~PvL~Ge~y~A~C~aa~YYPp~ 266 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAP-LV----------DLSVHPSLKGENYRAVCVVASYFPHS 266 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCC-cc----------cccCCccccCCCceEEEEeeeecCCC
Confidence 45999999999999999777676555444444444 3333 22 2334456789999999999654 544
Q ss_pred --ceEEEeCCEeecC-CC-ceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCce-eEEE----EEEEEecCcC
Q psy670 133 --DIIWYQGTKVIED-TG-RIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGE-SNAN----IALNFQGGEN 202 (540)
Q Consensus 133 --~v~W~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~-~~~~----~~l~v~~~~~ 202 (540)
.+.||+||.++.. .. +........+.-+..++|.+.+... +..=..+|.+.-.... .... ..-.|+.
T Consensus 267 Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~--- 343 (486)
T PHA03273 267 SVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFV--- 343 (486)
T ss_pred ceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCcccc---
Confidence 5999999998872 22 1122222223334556777776433 3445889998643322 2222 1112221
Q ss_pred CCCCCCeeccCCceeecCCCCeEEEEEEecccCC--CeEEEEeCC
Q psy670 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR--PEVKWFKAD 245 (540)
Q Consensus 203 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~ 245 (540)
+|.+ .+.+..|.- .|.+..-|. ..+.|+.++
T Consensus 344 ----~P~I-----s~~F~~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 344 ----APTV-----SVTVEDGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred ----CCeE-----EEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence 2222 334445554 488876654 679998877
No 265
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.29 E-value=0.00021 Score=66.99 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=112.7
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCC-c--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--
Q psy670 164 RLEINNPTKDDGGNYRCNACNSI-G--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-- 237 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-- 237 (540)
.|.|.+++..++|.|+-.+.+.. + .....++|.+.. +|.+...+ ..+.+|+...-.|.+.. +|..
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr-------~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~Sv 360 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYK-------RPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSV 360 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEec-------CCCccccC--CccccCCCceEEEEeeeecCCCce
Confidence 79999999999999998765432 2 235566666664 55444433 34568999999999987 5543
Q ss_pred eEEEEeCCEEeeccCceEEEE--ecCCCeEEEEEEEeCCCCCC--cEEEEEEEEcCCCCeeee-EEEEEeeccCCCCCCC
Q psy670 238 EVKWFKADKLVKESSKIKIIV--NEQDDTYEIICEITDPIGPD--SGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPP 312 (540)
Q Consensus 238 ~v~W~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d--~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p 312 (540)
.+.|+.|+..+.......... .++..+..++|.+......+ .-..+|.+.-.....+.+ +.-.+. +. ...+|
T Consensus 361 rlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaat--P~-VY~~P 437 (566)
T PHA03269 361 IVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVT--PD-VYPFP 437 (566)
T ss_pred EEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccC--Cc-cccCC
Confidence 589999998887532221111 11223444566654332222 347799887533322211 111111 00 01133
Q ss_pred eEEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcC---CCCCC-CeeE
Q psy670 313 TFIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD---PRKED-TGLY 386 (540)
Q Consensus 313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~---~~~~d-~G~Y 386 (540)
.+. +....|.- .|.+..-|. ..+.|+.++.............-.+... -.+|.+ ++.+| --+|
T Consensus 438 tIS-----m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPG---LVNLRS~~pLS~~dgpveY 506 (566)
T PHA03269 438 NVS-----IEIIDGHI---VCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKR---FVNLQSSCDTSELDGPITY 506 (566)
T ss_pred eEE-----EEEeCCEE---EEecccccCCCceEEEEecCCCCCCccceeeccCCCCCC---ceeecccccccccCCceeE
Confidence 332 22333433 488887765 4789998876644333221111111111 234443 33333 2469
Q ss_pred EEEEEcC
Q psy670 387 KCNIKNF 393 (540)
Q Consensus 387 ~C~a~n~ 393 (540)
+|++..-
T Consensus 507 TCrL~GY 513 (566)
T PHA03269 507 SCHLDGY 513 (566)
T ss_pred EEEEeec
Confidence 9998653
No 266
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.28 E-value=0.00039 Score=64.43 Aligned_cols=172 Identities=13% Similarity=0.194 Sum_probs=97.2
Q ss_pred EEEEEcccccCCCeeEEEEEEccCccee--eeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGS--STVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP 132 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~ 132 (540)
-.|+|+.++...+|.|+=...+.++... ..+.|.....+ .+. ..+--+.+|+...-.|.+..+ |..
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~P-svs----------v~~~PvL~Ge~Y~AtC~va~YYPp~ 250 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRP-SLS----------IRPHAVLEGEPFGATCVAANYYPGD 250 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCC-ccc----------ccCCccccCCCceEEEEeeeecCCC
Confidence 4699999999999999999887766443 33444444333 222 233446689999999999654 544
Q ss_pred --ceEEEeCCEeecCCCceEEEEee-cCcceEEEEEEEcCCCCCC-CeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCC
Q psy670 133 --DIIWYQGTKVIEDTGRIKMSKKS-IGKDTYLLRLEINNPTKDD-GGNYRCNACNSIGE-SNANIALNFQGGENGAGFA 207 (540)
Q Consensus 133 --~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~ 207 (540)
.+.||+|+.++............ .+.-...++|++.....+. -=+.+|.+.-.... ....+.-.+ .
T Consensus 251 Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~---------~ 321 (466)
T PHA03270 251 RAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATG---------A 321 (466)
T ss_pred ceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccc---------c
Confidence 59999999988543222222211 1222344566655543222 23789998633222 122221111 1
Q ss_pred CeeccCC-ceeecCCCCeEEEEEEecccC-CCeEEEEeCCEEeec
Q psy670 208 PSFIEKP-RIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKE 250 (540)
Q Consensus 208 p~~~~~~-~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~~ 250 (540)
|.+...| -.+.+..|.- .|.+..-| ...+.|+.++.....
T Consensus 322 P~VY~~P~Isv~F~dG~A---VCtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 322 PTVLPRPTIEMEFGGDEA---VCTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred CccccCCeEEEEEeCCEE---EEeccccCCCCEEEEEecCCCCCC
Confidence 1111112 1334445554 47766544 447999988766543
No 267
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.28 E-value=1.1e-05 Score=62.82 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=50.0
Q ss_pred CceeecCCCCeEEEEEEeccc----CCCeEEEEe---------------CCEEeecc-C--ceEEEEecCCCeEEEEEEE
Q psy670 214 PRIIPNESGTLIQMKCKCSAK----PRPEVKWFK---------------ADKLVKES-S--KIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~----p~~~v~W~~---------------~~~~l~~~-~--~~~~~~~~~~~~~~~~l~i 271 (540)
+..+.+..|+.+.|.|..... +...|.|.+ +|...... . +.++...........++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 345566789999999999653 335799943 22221100 0 0111111122344568999
Q ss_pred eCCCCCCcEEEEEEEEcCCCC
Q psy670 272 TDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.+++.+|.|.|+|.+.|..+.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999986543
No 268
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.28 E-value=0.00024 Score=65.27 Aligned_cols=174 Identities=17% Similarity=0.256 Sum_probs=98.0
Q ss_pred eEEEEEEcccccCCCeeEEEEEEccCcc--eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-C
Q psy670 54 YLAVLTIKNVQKSDSGEYKVIAKNKNGE--GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-P 130 (540)
Q Consensus 54 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p 130 (540)
..-.|.|+++...|+|.|+....+.... ....+.+.+...+..+. ..+-.+..|+...-.|.+..+ |
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVs----------V~a~PVL~Ge~YkAtC~vAnYYP 274 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVD----------VLAPPVLSGENYKASCIVRHFYP 274 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCcc----------ccCCccccCCCceEEEEeeeecC
Confidence 4568999999999999886655554332 23444455554442232 233446689999999999654 5
Q ss_pred CC--ceEEEeCCEeecCCCceEEEE---eecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCC
Q psy670 131 MP--DIIWYQGTKVIEDTGRIKMSK---KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205 (540)
Q Consensus 131 ~~--~v~W~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~ 205 (540)
+. .+.|++||.++.......... .....-+..++|.+.+...+..=..+|.+.-..+....+. .-..
T Consensus 275 P~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaa------ 346 (490)
T PHA03271 275 PGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATA------ 346 (490)
T ss_pred CCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--eccc------
Confidence 44 599999998875433222211 1122233445666655444444589999864333221111 1111
Q ss_pred CCCeeccCCc-eeecCCCCeEEEEEEecccC-CCeEEEEeCCEEee
Q psy670 206 FAPSFIEKPR-IIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVK 249 (540)
Q Consensus 206 ~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~ 249 (540)
.|.+-..|. .+....|.-+ |.+..-| ...+.|..++....
T Consensus 347 -tP~VY~~P~ISv~FedG~AV---CtA~CVP~gV~lrWlVgD~p~p 388 (490)
T PHA03271 347 -IPTVYHHPRISLAFKDGYAI---CTIECVPSGITVRWLVHDEPQP 388 (490)
T ss_pred -CCccccCCeEEEEEeCCEEE---EeccccCCCcEEEEEecCCCCC
Confidence 222222222 3445556544 6665543 45799998876543
No 269
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.27 E-value=0.00022 Score=66.91 Aligned_cols=167 Identities=15% Similarity=0.173 Sum_probs=96.6
Q ss_pred EEEEEcccccCCCeeEEEEEEccC-cc--eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKN-GE--GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM 131 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~-~~--~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~ 131 (540)
..|+|++++..++|.|.=++.+.. +. .+..+.|.+...| .+. ..+--+.+|+...-.|.+..+ |.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P-sVs----------V~p~PVL~Ge~YkAtC~vA~YYPp 357 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP-NIT----------VIGDPVLLGNPYAAYCKVNKYYPP 357 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC-Ccc----------ccCCccccCCCceEEEEeeeecCC
Confidence 569999999999999987665432 22 3344555554443 222 233446789999999999654 54
Q ss_pred C--ceEEEeCCEeecCCCceE-EEEeecCcceEEEEEEEcCCCCCC--CeEEEEEEEcCCce-eEEEE----EEEEecCc
Q psy670 132 P--DIIWYQGTKVIEDTGRIK-MSKKSIGKDTYLLRLEINNPTKDD--GGNYRCNACNSIGE-SNANI----ALNFQGGE 201 (540)
Q Consensus 132 ~--~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d--~G~Y~C~~~~~~~~-~~~~~----~l~v~~~~ 201 (540)
. .+.||+|+.++....... ......+.-+..++|.+......| -=..+|.+.-..+. ...++ .-.|+.
T Consensus 358 ~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~-- 435 (566)
T PHA03269 358 HSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYP-- 435 (566)
T ss_pred CceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcccc--
Confidence 4 599999988886422111 122333334555677764432222 34679998643222 22211 112221
Q ss_pred CCCCCCCeeccCCceeecCCCCeEEEEEEecccCC--CeEEEEeCCEEe
Q psy670 202 NGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR--PEVKWFKADKLV 248 (540)
Q Consensus 202 ~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~l 248 (540)
.|.+ .+.+..|.- .|.+..-|. ..+.|+.++...
T Consensus 436 -----~PtI-----Sm~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~ 471 (566)
T PHA03269 436 -----FPNV-----SIEIIDGHI---VCLAKCVPRGVVHFNWWINDIPI 471 (566)
T ss_pred -----CCeE-----EEEEeCCEE---EEecccccCCCceEEEEecCCCC
Confidence 2222 334455554 487776554 479999887663
No 270
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.27 E-value=3.9e-06 Score=64.95 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=49.6
Q ss_pred cccCCCeEEEEEEEeec-CCCceEEEeCCEe-----ec------------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670 113 IHQDGDLLVMECVLEAS-PMPDIIWYQGTKV-----IE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 174 (540)
.+.+|++++|.|.+.+. +...+.|+|.... +. ...++.+... ......+|.|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD---SSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe---ccCCEEEEEECCCCHHH
Confidence 46789999999999765 6668999994321 10 1122222221 11134589999999999
Q ss_pred CeEEEEEEEcCCc
Q psy670 175 GGNYRCNACNSIG 187 (540)
Q Consensus 175 ~G~Y~C~~~~~~~ 187 (540)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999987654
No 271
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.27 E-value=8.4e-06 Score=60.88 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=51.9
Q ss_pred eeecCCCCeEEEEEEecc-cCCCe--EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 216 IIPNESGTLIQMKCKCSA-KPRPE--VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
...+.+|+.++|.|.+.+ .|.+. |.||+++..+....... .........+++.+..-+.+|...|+|+|.++...
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~--~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD--NTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc--ccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 334578999999999987 78776 79999999886532111 11123344567777655555556999999987554
No 272
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.27 E-value=6.3e-06 Score=59.92 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=48.4
Q ss_pred EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
+.|.|.+.| +|...++|+|+|..+.............+.....+.|.+.....+++..|+|.+.+...
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999965 67789999999999865432222222222334456888887778888999999988654
No 273
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.26 E-value=1.1e-05 Score=62.42 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=54.7
Q ss_pred CCCeEEEEEEEEccC----------CCeEEEEECC--EEcc----CC------CceEEEEEe---cCCeeEEEEEEcCCC
Q psy670 325 GGKLVVMECKVKAKP----------MPEIVWFHEG--KELQ----QT------DRISWNVTL---KGDKYHIRLEVKDPR 379 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p----------~~~i~W~~~~--~~~~----~~------~~~~~~~~~---~~~~~~~~L~i~~~~ 379 (540)
.|++++|.|.....+ ...|.|++.. .... .. ..+..+... .......+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 388999999997644 2579999852 1110 00 111111111 111223489999999
Q ss_pred CCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 380 KEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 380 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
.+|+|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777778888888864
No 274
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.26 E-value=0.00028 Score=65.99 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--
Q psy670 163 LRLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-- 237 (540)
Q Consensus 163 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-- 237 (540)
..|.|..++...+|.|+-.+.+..+.. ...++|.... +|.+...+. .+.+|+...-.|.+.. +|+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr-------~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv 268 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYN-------APLVDLSVH--PSLKGENYRAVCVVASYFPHSSV 268 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEec-------CCcccccCC--ccccCCCceEEEEeeeecCCCce
Confidence 369999999999999998876655443 4445554453 555544333 4568999999999987 5543
Q ss_pred eEEEEeCCEEeec-cC-ceEEEEe-cCCCeEEEEEEEeCCCC-CCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCe
Q psy670 238 EVKWFKADKLVKE-SS-KIKIIVN-EQDDTYEIICEITDPIG-PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313 (540)
Q Consensus 238 ~v~W~~~~~~l~~-~~-~~~~~~~-~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~ 313 (540)
.+.|+.+|.++.. .. ....... ++..+..++|.+..... +..-..+|.+.-.....+.+ .+.-...+. ...+|.
T Consensus 269 ~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~-RfsAt~~P~-Vy~~P~ 346 (486)
T PHA03273 269 KLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFA-RIAKAGTPS-VFVAPT 346 (486)
T ss_pred EEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCccee-eccccccCc-cccCCe
Confidence 5999999998872 22 1222212 22335556676666433 33448999887533322111 111111100 011333
Q ss_pred EEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECC
Q psy670 314 FIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEG 349 (540)
Q Consensus 314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~ 349 (540)
+.. ....|+- .|.+..-|. ..+.|+.++
T Consensus 347 Is~-----~F~~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 347 VSV-----TVEDGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EEE-----EEeCCEE---EEecccccCCCeeEEEEccC
Confidence 322 2333332 499887776 588998877
No 275
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.24 E-value=7.6e-06 Score=61.11 Aligned_cols=74 Identities=14% Similarity=0.316 Sum_probs=52.1
Q ss_pred CccccCCCeEEEEEEEee-cCCCc--eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
+..+.+|+.++|+|.+.| .|.+. |.|||++..+....... .........++|.+...+.+|...|+|.|.+..+
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 445789999999999954 67776 79999999986532111 1111233445788887777777799999987653
No 276
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.22 E-value=1.6e-05 Score=62.17 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=49.9
Q ss_pred CceEEeeCCCeEEEEEEEEccC----CCeEEEEEC----CEE--cc---------CCCce--EEEEEecCCeeEEEEEEc
Q psy670 318 PKIRSEQGGKLVVMECKVKAKP----MPEIVWFHE----GKE--LQ---------QTDRI--SWNVTLKGDKYHIRLEVK 376 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p----~~~i~W~~~----~~~--~~---------~~~~~--~~~~~~~~~~~~~~L~i~ 376 (540)
+..+.+.+|++++|.|.....+ ...|.|++- +.. +. ...++ +.....+.....++|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4567788999999999986533 236999752 111 10 01111 111111111223479999
Q ss_pred CCCCCCCeeEEEEEEcCCee
Q psy670 377 DPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 377 ~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+++.+|+|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999987653
No 277
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.22 E-value=2.9e-06 Score=64.10 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=52.2
Q ss_pred cCCCeEEEEEEEee-cCCCceEEEeCCEeec--C-----CCceEEEE---eecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 115 QDGDLLVMECVLEA-SPMPDIIWYQGTKVIE--D-----TGRIKMSK---KSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 115 ~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~--~-----~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
..|++|+|.|.... .....+.|++....+. . ........ ..........+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998744 4445799998753321 1 11000000 000111123589999999999999999998
Q ss_pred cCCcee-EEEEEEEE
Q psy670 184 NSIGES-NANIALNF 197 (540)
Q Consensus 184 ~~~~~~-~~~~~l~v 197 (540)
...+.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 776553 66666665
No 278
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.20 E-value=9.1e-06 Score=63.31 Aligned_cols=76 Identities=17% Similarity=0.345 Sum_probs=51.3
Q ss_pred CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE--Ecc--------------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--ELQ--------------QTDRISWNVTLKGDKYHIRLEVKDPRK 380 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~ 380 (540)
.|....+.+|++++|.|.+.+ +.+.+.|++... ... .....++...... ....+|.|.+++.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCCh
Confidence 355677889999999999987 677899998532 110 0001111111111 1345899999999
Q ss_pred CCCeeEEEEEEcCC
Q psy670 381 EDTGLYKCNIKNFH 394 (540)
Q Consensus 381 ~d~G~Y~C~a~n~~ 394 (540)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998754
No 279
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.20 E-value=9.6e-06 Score=60.81 Aligned_cols=67 Identities=13% Similarity=0.314 Sum_probs=48.1
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 184 (540)
.+|.+|++|+|.|.... +...+.|+|+|...... .. .........+.+.|.+++.+|+|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---HL--YEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---ec--ccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 46789999999998743 55689999988653211 00 1111234456899999999999999999753
No 280
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.17 E-value=2.2e-05 Score=59.76 Aligned_cols=76 Identities=18% Similarity=0.420 Sum_probs=48.5
Q ss_pred eEEEEEEEEccC---CCeEEEEECCEE-----cc---C--C--------CceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670 328 LVVMECKVKAKP---MPEIVWFHEGKE-----LQ---Q--T--------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386 (540)
Q Consensus 328 ~v~l~C~~~~~p---~~~i~W~~~~~~-----~~---~--~--------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 386 (540)
+++|.|.....+ ...|.|++.... +. . . ++..+ ..+......+|.|.+++.+|+|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f--~~~~~~~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRF--ETPNPIADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEE--eCCCCCCceEEEEecCccccceEE
Confidence 578999986543 347899983211 10 0 0 11122 111112234899999999999999
Q ss_pred EEEEEc-CCeeeEEEEEEEE
Q psy670 387 KCNIKN-FHGELNANLTLNI 405 (540)
Q Consensus 387 ~C~a~n-~~g~~~~~~~l~V 405 (540)
.|.+.+ ..|..+..+.|.|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999987 5676677777765
No 281
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.17 E-value=2.8e-05 Score=55.38 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=51.6
Q ss_pred EeeCCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 322 SEQGGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
.+..|++++|+|.....+. +.|.|...+....... ..++. +|.+..++..|+|.++|.++........
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~------~~~~k----tL~~~qv~~qdSG~WtC~V~~~~k~~~~ 79 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL------NQDKK----TLNLVQLGPNDSGTWDCIVSVNSSEKTL 79 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec------cCCcc----EEEeceeCcccCCEEEEEEEECceEEEE
Confidence 4678999999999965444 4999986554322100 01111 8999999999999999999866544555
Q ss_pred EEEEEEE
Q psy670 400 NLTLNIE 406 (540)
Q Consensus 400 ~~~l~V~ 406 (540)
.+.+.|.
T Consensus 80 ~~~V~Vl 86 (88)
T cd07694 80 KLDIKVL 86 (88)
T ss_pred EeeEEEE
Confidence 5555543
No 282
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.17 E-value=8.4e-06 Score=61.25 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=49.6
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCC--------------CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQT--------------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 391 (540)
|++|+|.|.........|.|++........ ..+........+ .+|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 789999998876566689999875432110 011111111111 389999999999999999998
Q ss_pred cCCee-eEEEEEEE
Q psy670 392 NFHGE-LNANLTLN 404 (540)
Q Consensus 392 n~~g~-~~~~~~l~ 404 (540)
...+. ....+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 87643 34454443
No 283
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.15 E-value=3.5e-05 Score=59.28 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199 (540)
Q Consensus 162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 199 (540)
.++|.|.+++.+|+|.|.|.+..........+.|.|.+
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 46999999999999999999998887778888888764
No 284
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.15 E-value=1.2e-05 Score=62.25 Aligned_cols=74 Identities=20% Similarity=0.349 Sum_probs=50.3
Q ss_pred EeeCCCeEEEEEEEEcc-CCCeEEEEECCEE-----cc----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670 322 SEQGGKLVVMECKVKAK-PMPEIVWFHEGKE-----LQ----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 385 (540)
.+.+|+.++|.|.+... +...+.|++.... +. .....+.....+......+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 36689999999999876 6678999985321 00 00111122222222234589999999999999
Q ss_pred EEEEEEcCCe
Q psy670 386 YKCNIKNFHG 395 (540)
Q Consensus 386 Y~C~a~n~~g 395 (540)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999988764
No 285
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.13 E-value=3.7e-05 Score=57.87 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCCCeeEEEEEEc-CCeeeEEEEEEEE
Q psy670 371 IRLEVKDPRKEDTGLYKCNIKN-FHGELNANLTLNI 405 (540)
Q Consensus 371 ~~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V 405 (540)
.+|.|.+++.+|+|.|+|.+.+ ..|..+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 4899999999999999999999 6788888888877
No 286
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.12 E-value=2e-05 Score=61.92 Aligned_cols=88 Identities=16% Similarity=0.383 Sum_probs=56.6
Q ss_pred CceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCE-----Ecc-C-CC----------ceEEEEEecCCeeEEEEEEcCCC
Q psy670 318 PKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGK-----ELQ-Q-TD----------RISWNVTLKGDKYHIRLEVKDPR 379 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~-----~~~-~-~~----------~~~~~~~~~~~~~~~~L~i~~~~ 379 (540)
+....+.+|+++.|.|... ......+.|++... .+. . .. ..+.....+......+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4567788999999999998 44566899998322 111 0 00 00111122222334589999999
Q ss_pred CCCCeeEEEEEEcC-CeeeEEEEEEEE
Q psy670 380 KEDTGLYKCNIKNF-HGELNANLTLNI 405 (540)
Q Consensus 380 ~~d~G~Y~C~a~n~-~g~~~~~~~l~V 405 (540)
.+|+|.|.|.+... .........|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999887 333444555544
No 287
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.11 E-value=1.5e-05 Score=62.10 Aligned_cols=75 Identities=16% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCceeecCCCCeEEEEEEecccCCCeEEEEeCCE--Eee--------------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK--LVK--------------ESSKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~l~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
.|..+.+.+|++++|.|.+.+ +...+.||+... .+. .....++...... .....|.|.+++.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCCh
Confidence 455677889999999999987 667899999532 110 0000111111111 1345899999999
Q ss_pred CCcEEEEEEEEcC
Q psy670 277 PDSGTYRCNVKNE 289 (540)
Q Consensus 277 ~d~g~y~C~~~~~ 289 (540)
+|+|.|.|.+.+.
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 82 EDSAVYLCASSLG 94 (110)
T ss_pred hhCEEEEEEeeCC
Confidence 9999999998764
No 288
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.11 E-value=1.8e-05 Score=59.92 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCeEEEEEEEeecCC-CceEEEeCCE----eec---C--C----CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 117 GDLLVMECVLEASPM-PDIIWYQGTK----VIE---D--T----GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 117 G~~v~l~C~~~~~p~-~~v~W~~~~~----~~~---~--~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
|++++|.|....... ..+.|+|... .+. . + ..+.-...........++|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999743322 3699998421 110 0 0 011000000112223468999999999999999998
Q ss_pred Ec-CCceeEEEEEEEE
Q psy670 183 CN-SIGESNANIALNF 197 (540)
Q Consensus 183 ~~-~~~~~~~~~~l~v 197 (540)
.. ..|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 4566666666665
No 289
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.10 E-value=1.2e-05 Score=60.68 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCCeEEEEEEEEc-cCCCeEEEEECCEEccC-C------------CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 325 GGKLVVMECKVKA-KPMPEIVWFHEGKELQQ-T------------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 325 ~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
.|++|+|.|.... .....+.|++....+.. . ..+......+.. ..+|.|.+++.+|+|.|.|.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~--~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQN--DYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCC--ceeEEECCCchHHCEEEEEEE
Confidence 6999999998754 44457999986432211 0 111111121121 238999999999999999999
Q ss_pred EcCCeee-EEEEEEEE
Q psy670 391 KNFHGEL-NANLTLNI 405 (540)
Q Consensus 391 ~n~~g~~-~~~~~l~V 405 (540)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887544 55666655
No 290
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.09 E-value=5.3e-05 Score=58.36 Aligned_cols=75 Identities=8% Similarity=0.155 Sum_probs=49.5
Q ss_pred cccCCCeEEEEEEEeec-CC-CceEEEeCCEeecCCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 113 IHQDGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
....|+.++|.|.+.|+ |. ..++|+|||+.+..... ....... +.....+.|.+.....++...|+|.+.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCC
Confidence 34578889999999774 54 48999999999864322 2222222 23444567888765444445699999987543
No 291
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.09 E-value=3.8e-05 Score=60.41 Aligned_cols=78 Identities=15% Similarity=0.311 Sum_probs=49.2
Q ss_pred CceEEeeCCCeEEEEEEEEccC----CCeEEEEECCE------Ecc----------CCCceE--EEEEecCCeeEEEEEE
Q psy670 318 PKIRSEQGGKLVVMECKVKAKP----MPEIVWFHEGK------ELQ----------QTDRIS--WNVTLKGDKYHIRLEV 375 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p----~~~i~W~~~~~------~~~----------~~~~~~--~~~~~~~~~~~~~L~i 375 (540)
|....+.+|+.++|.|...... ...+.|++... .+. ...++. .....+.....++|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556788999999999986532 24699986321 000 011111 1111111122358999
Q ss_pred cCCCCCCCeeEEEEEEcCCe
Q psy670 376 KDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 376 ~~~~~~d~G~Y~C~a~n~~g 395 (540)
.+++.+|+|.|.|.+.|...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999998754
No 292
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.08 E-value=1.3e-05 Score=60.87 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=45.7
Q ss_pred cccCCCeEEEEEEEeec--CCCceEEEeCCE--ee---c-----C----CCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 113 IHQDGDLLVMECVLEAS--PMPDIIWYQGTK--VI---E-----D----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~--p~~~v~W~~~~~--~~---~-----~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
.+.+|++++|.|.+.+. ....+.|||... .. . . ..++... .+...+.|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS-----KSGNTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE-----ccCCEEEEEECCCChhhCE
Confidence 46799999999998654 456799998321 11 0 0 1122221 1223458999999999999
Q ss_pred EEEEEEEc
Q psy670 177 NYRCNACN 184 (540)
Q Consensus 177 ~Y~C~~~~ 184 (540)
.|.|.+.+
T Consensus 77 ~Y~C~~~~ 84 (98)
T cd04984 77 DYYCQVWD 84 (98)
T ss_pred EEEEEEcc
Confidence 99999864
No 293
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.08 E-value=3.5e-05 Score=54.91 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=52.5
Q ss_pred ccccCCCeEEEEEEEeecC--CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 112 TIHQDGDLLVMECVLEASP--MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
..+..|++++|+|.....+ .+.|.|+..+........ ....+|.+..++..|+|.++|.+.......
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~ 77 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVNSSEK 77 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEECceEE
Confidence 3567899999999995544 449999875443211000 001189999999999999999998765555
Q ss_pred EEEEEEEEe
Q psy670 190 NANIALNFQ 198 (540)
Q Consensus 190 ~~~~~l~v~ 198 (540)
...+.|.|.
T Consensus 78 ~~~~~V~Vl 86 (88)
T cd07694 78 TLKLDIKVL 86 (88)
T ss_pred EEEeeEEEE
Confidence 566666554
No 294
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.07 E-value=1.6e-05 Score=57.73 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=46.6
Q ss_pred cceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCc
Q psy670 8 KSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNG 80 (540)
Q Consensus 8 ~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~ 80 (540)
++|.+.| +|. +.++|+|||.++............++ .....+.|.+..-..+|...|+|++.+..-
T Consensus 4 LtC~a~gf~P~------~~itW~kng~~l~~~~~~~~~~~~~~-t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 4 LTCKTSGSKPA------ADIRWFKNDKEIKDVKYLKEEDANRK-TFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEeCCccCC------CEEEEEECCEECcCceeeEeeCCCCC-EEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 6799986 554 99999999999865332222222222 444667888877777788899999988654
No 295
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.07 E-value=5.5e-05 Score=56.70 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=48.5
Q ss_pred eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 288 (540)
...+..|++++|.|.... ....+.|+|+|...... ...........+.+.|..++.+|+|.|.|....
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~----~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL----HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce----ecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 345678999999998865 55679999988653211 001112244556899999999999999998764
No 296
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.06 E-value=3.3e-05 Score=59.67 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=50.0
Q ss_pred eCCceEEeeCCCeEEEEEEEEccC-CCeEEEEECC--EE---cc-------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670 316 EKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFHEG--KE---LQ-------QTDRISWNVTLKGDKYHIRLEVKDPRKED 382 (540)
Q Consensus 316 ~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 382 (540)
..|....+.+|++++|.|.+.+.. ...+.|++.. .. +. .....++.... ......|.|.+++.+|
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~D 82 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEPED 82 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCChHH
Confidence 345567788999999999997655 5679999742 11 10 00001111111 1234479999999999
Q ss_pred CeeEEEEEEcC
Q psy670 383 TGLYKCNIKNF 393 (540)
Q Consensus 383 ~G~Y~C~a~n~ 393 (540)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998653
No 297
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.05 E-value=4.5e-05 Score=57.41 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEc-CCceeEEEEEEEE
Q psy670 162 LLRLEINNPTKDDGGNYRCNACN-SIGESNANIALNF 197 (540)
Q Consensus 162 ~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 197 (540)
.++|.|.+++.+|+|.|.|.+.+ ..|..+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 35899999999999999999998 5677777777776
No 298
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.03 E-value=1.4e-05 Score=61.83 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=47.0
Q ss_pred CccccCCCeEEEEEEEeecC-CCceEEEeCC--Ee---ec-C--------CCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASP-MPDIIWYQGT--KV---IE-D--------TGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~--~~---~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 175 (540)
...+.+|++++|.|.+.+.. ...+.|||.. +. +. . ..++... .......|.|.+++.+|+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS-----GSGTDFTLTISRVEPEDA 83 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe-----ccCCEEEEEECCCChHHC
Confidence 35678999999999996554 5679999842 11 11 0 0122111 122345799999999999
Q ss_pred eEEEEEEEc
Q psy670 176 GNYRCNACN 184 (540)
Q Consensus 176 G~Y~C~~~~ 184 (540)
|.|.|.+.+
T Consensus 84 g~Y~Ca~~~ 92 (106)
T cd04980 84 AVYYCQQYG 92 (106)
T ss_pred EEEEEEEeC
Confidence 999999865
No 299
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.02 E-value=2.6e-05 Score=61.46 Aligned_cols=71 Identities=17% Similarity=0.379 Sum_probs=48.5
Q ss_pred CccccCCCeEEEEEEEee--cCCCceEEEeC--CEee------cC-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEA--SPMPDIIWYQG--TKVI------ED-----------TGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~--~p~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+ .+...+.|||. +... .. ..++.+... .......|.|.+
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~ 83 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD---VGKSTSTLTIQN 83 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE---CCCCEEEEEEEE
Confidence 356789999999999976 56778999994 2111 00 122222211 111345899999
Q ss_pred CCCCCCeEEEEEEEc
Q psy670 170 PTKDDGGNYRCNACN 184 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~ 184 (540)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999864
No 300
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.01 E-value=8.9e-05 Score=56.97 Aligned_cols=82 Identities=18% Similarity=0.358 Sum_probs=53.0
Q ss_pred CCeEEEEEEEEccC-------CCeEEEEECC-----EEc----cCCC------ce--EEEEEe-cCCeeEEEEEEcCCCC
Q psy670 326 GKLVVMECKVKAKP-------MPEIVWFHEG-----KEL----QQTD------RI--SWNVTL-KGDKYHIRLEVKDPRK 380 (540)
Q Consensus 326 g~~v~l~C~~~~~p-------~~~i~W~~~~-----~~~----~~~~------~~--~~~~~~-~~~~~~~~L~i~~~~~ 380 (540)
|++++|.|...-.| .+.|.|.+.. ... ..+. .+ +..... .......+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999976432 3689998741 110 0111 11 111111 1112345999999999
Q ss_pred CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 381 EDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 381 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+|+|.|.|.+..........+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999766677788887764
No 301
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.00 E-value=5.2e-05 Score=59.74 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=50.8
Q ss_pred CceEEeeCCCeEEEEEEEEc--cCCCeEEEEECC--EEc------cC---------CCceEEEEEecCCeeEEEEEEcCC
Q psy670 318 PKIRSEQGGKLVVMECKVKA--KPMPEIVWFHEG--KEL------QQ---------TDRISWNVTLKGDKYHIRLEVKDP 378 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~--~p~~~i~W~~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~L~i~~~ 378 (540)
|....+.+|++++|.|.+.+ .+.+.+.|++.. ... .. ....++....+.......|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44566788999999999987 567789999842 111 00 001122222222223458999999
Q ss_pred CCCCCeeEEEEEEcC
Q psy670 379 RKEDTGLYKCNIKNF 393 (540)
Q Consensus 379 ~~~d~G~Y~C~a~n~ 393 (540)
+.+|+|.|.|.+...
T Consensus 85 ~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 85 EKEDSATYYCAYWES 99 (116)
T ss_pred CHHHCEEEEEEEecC
Confidence 999999999998653
No 302
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.00 E-value=3.5e-05 Score=60.58 Aligned_cols=84 Identities=24% Similarity=0.452 Sum_probs=53.2
Q ss_pred CccccCCCeEEEEEEEe-ecCCCceEEEeCCE-----eec---C-----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLE-ASPMPDIIWYQGTK-----VIE---D-----------TGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~-----~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
...+.+|+++.|.|... ......+.|++... .+. . ..+..+..+ ......+|.|.++
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~i~~l 86 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN---GSQNNFSLTIKNL 86 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE---TTTTEEEEEESSE
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec---ccCCeEEEEECCC
Confidence 45688999999999997 34555899998321 111 0 112111111 1122358999999
Q ss_pred CCCCCeEEEEEEEcCCc-eeEEEEEEEE
Q psy670 171 TKDDGGNYRCNACNSIG-ESNANIALNF 197 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~-~~~~~~~l~v 197 (540)
+.+|+|.|.|.+..... .....+.|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999987632 2344444443
No 303
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.00 E-value=0.00014 Score=56.01 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=33.6
Q ss_pred EEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 265 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
..++|.|.+++.+|+|.|.|.+..........+.|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 346899999999999999999998877778888888764
No 304
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.98 E-value=5.8e-05 Score=53.89 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=46.5
Q ss_pred EEEEEEEeec-CC-CceEEEeCCEeecCCCc-eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 120 LVMECVLEAS-PM-PDIIWYQGTKVIEDTGR-IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 120 v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
++|.|.+.|+ |. ..+.|+|+|+.+..+.. ........+.....+.|.|.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999875 55 48999999987543321 11122233445556688888777788899999998754
No 305
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.98 E-value=3.5e-05 Score=58.58 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=48.0
Q ss_pred cccCCCeEEEEEEEee-cCCCceEEEeCCEe-----e--------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670 113 IHQDGDLLVMECVLEA-SPMPDIIWYQGTKV-----I--------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY 178 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 178 (540)
.+.+|++++|.|.... .....+.|+|.... + ....++.+... ......+|.|.+++.+|+|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD---PDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec---CCCCEEEEEEcCCCHHHCEEE
Confidence 4678999999999854 34557999985321 1 01123322211 223445899999999999999
Q ss_pred EEEEEcCC
Q psy670 179 RCNACNSI 186 (540)
Q Consensus 179 ~C~~~~~~ 186 (540)
.|.+....
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99987654
No 306
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.98 E-value=6.1e-05 Score=56.13 Aligned_cols=75 Identities=13% Similarity=0.293 Sum_probs=48.0
Q ss_pred CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
..+.++|.|.+.|+ |. ..|+|.++|..+.............++.+ .+.|.+......+...|+|.+.+.......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~ 91 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED 91 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence 45668999999995 54 47899999998744321111112222233 346667655555677899999998765443
No 307
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.97 E-value=5.1e-05 Score=56.50 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=47.5
Q ss_pred CCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 222 GTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 222 g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
|+.+.|.|.+.+ +|++.|+|+.++..+........ .....+ ...+.|.+..-..++...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQS-SSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEE-EETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeee-eccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 789999998865 99999999999988722222221 222333 33457877766666777999999987543
No 308
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.96 E-value=4.2e-05 Score=62.89 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=58.2
Q ss_pred CccccCCCeEEEEEEEe-ecCCCceEEEeCCEeec----CC--------CceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670 111 PTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIE----DT--------GRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 177 (540)
.+.|.+|++++|.|... +...+.+.|+|.++.+. .+ .++.+ .......+.|+|.+++.+|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~----mS~s~~~StItIknVt~sDeGc 99 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY----LSKSFNESTILIKNVSLKDNGC 99 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE----eccCCCcceEEEEeCChhhCeE
Confidence 34678999999999984 55667899999643321 01 11111 0111223589999999999999
Q ss_pred EEEEEEcC-Cc-eeEEEEEEEEec
Q psy670 178 YRCNACNS-IG-ESNANIALNFQG 199 (540)
Q Consensus 178 Y~C~~~~~-~~-~~~~~~~l~v~~ 199 (540)
|+|.+..- .| ..+...-|+|..
T Consensus 100 Y~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 100 YTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEEEEecCCCCCceeEEEEEEEc
Confidence 99998643 45 567777888875
No 309
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.96 E-value=7.3e-05 Score=58.48 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=48.0
Q ss_pred CceeecCCCCeEEEEEEecccC----CCeEEEEeC----CEE--ee---c------cCce--EEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP----RPEVKWFKA----DKL--VK---E------SSKI--KIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~----~~~--l~---~------~~~~--~~~~~~~~~~~~~~l~i~ 272 (540)
+..+.+.+|++++|.|.....+ ...|.|++. +.. +. . ..++ +...........+.|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4456778899999999986432 236999752 111 10 0 0010 111111111224579999
Q ss_pred CCCCCCcEEEEEEEEcCCC
Q psy670 273 DPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~ 291 (540)
+++.+|+|.|.|.+.+...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999997544
No 310
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.96 E-value=9e-05 Score=56.08 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=50.3
Q ss_pred CCeEEEEEEecccCC-CeEEEEeCCE----Eee---c--c----Cce--EEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 222 GTLIQMKCKCSAKPR-PEVKWFKADK----LVK---E--S----SKI--KIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 222 g~~~~l~C~~~~~p~-~~v~W~~~~~----~l~---~--~----~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
|++++|.|....... ..|.|++... .+. . . ..+ ..... ......+.|.|.+++.+|+|.|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence 788999999764332 3699998432 110 0 0 000 11111 1223346899999999999999998
Q ss_pred EE-cCCCCeeeeEEEEE
Q psy670 286 VK-NEFGESNANLNLNI 301 (540)
Q Consensus 286 ~~-~~~~~~~~~~~l~v 301 (540)
+. .+.|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 87 46777777777765
No 311
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.95 E-value=0.00011 Score=54.81 Aligned_cols=78 Identities=12% Similarity=0.254 Sum_probs=50.1
Q ss_pred CeEEEEEEeccc-CCCeEEEEeCCE----Eeec-----------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 223 TLIQMKCKCSAK-PRPEVKWFKADK----LVKE-----------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 223 ~~~~l~C~~~~~-p~~~v~W~~~~~----~l~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
++++|.|..... ....|+|.|... .+.. .-..+.... ......++|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 368899998653 334799988421 1110 000111111 12233468999999999999999997
Q ss_pred E-cCCCCeeeeEEEEE
Q psy670 287 K-NEFGESNANLNLNI 301 (540)
Q Consensus 287 ~-~~~~~~~~~~~l~v 301 (540)
. .+.|+...++.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 6 57888888887776
No 312
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.95 E-value=4e-05 Score=57.38 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=48.0
Q ss_pred ccccCCCeEEEEEEEeec--CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 112 TIHQDGDLLVMECVLEAS--PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~--p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
..+..|+.++|.|.+.|+ |.. .++|.|+++...............+.....+.|.+..-...+.-.|+|.+.+...
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 346678999999999887 443 7899998753321111111122223344445777776555566799999988653
No 313
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.95 E-value=6e-05 Score=56.15 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCCeEEEEEEEeec-CC-CceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 116 DGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 116 ~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
.++.++|.|.+.|+ |. ..+.|+++|..+.... .........+.....+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45669999999885 54 4799999999864321 11111112233444567777766566778999999987644
No 314
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.93 E-value=0.0037 Score=57.78 Aligned_cols=170 Identities=17% Similarity=0.204 Sum_probs=95.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--e
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--E 238 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~ 238 (540)
.|.|.++...++|.|.-...+..... .+.+.+.+.. .+|.+...+. ++..|+...-.|.+.. +|+. .
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~------RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ------RPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe------cCCCccccCC--ccccCCCceEEEEeeeecCCCceE
Confidence 79999999999997755554433332 3444444443 1444443333 3567999999999987 5544 5
Q ss_pred EEEEeCCEEeeccCceEEEE--ec--CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeE
Q psy670 239 VKWFKADKLVKESSKIKIIV--NE--QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF 314 (540)
Q Consensus 239 v~W~~~~~~l~~~~~~~~~~--~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~ 314 (540)
+.|+.+|..+.......... .+ ...+..+++.+.+...+..-..+|.+.-.......+. .-.. .|.+
T Consensus 280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaa-------tP~V 350 (490)
T PHA03271 280 VSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATA-------IPTV 350 (490)
T ss_pred EEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--eccc-------CCcc
Confidence 99999998875443222211 12 2334445555555433444489998875433322222 2111 1222
Q ss_pred EeCCceE-EeeCCCeEEEEEEEEccC-CCeEEEEECCEEcc
Q psy670 315 IEKPKIR-SEQGGKLVVMECKVKAKP-MPEIVWFHEGKELQ 353 (540)
Q Consensus 315 ~~~~~~~-~~~~g~~v~l~C~~~~~p-~~~i~W~~~~~~~~ 353 (540)
...|... ....|.- .|.+..-| ...+.|+.++....
T Consensus 351 Y~~P~ISv~FedG~A---VCtA~CVP~gV~lrWlVgD~p~p 388 (490)
T PHA03271 351 YHHPRISLAFKDGYA---ICTIECVPSGITVRWLVHDEPQP 388 (490)
T ss_pred ccCCeEEEEEeCCEE---EEeccccCCCcEEEEEecCCCCC
Confidence 2222222 2333433 38887665 34789998776543
No 315
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.92 E-value=7.1e-05 Score=56.86 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=47.8
Q ss_pred EeeCCCeEEEEEEEEc-cCCCeEEEEECCEEc-------------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 322 SEQGGKLVVMECKVKA-KPMPEIVWFHEGKEL-------------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
.+.+|++++|.|.... .....+.|++..... ....++.+ ..+.......|.|.+++.+|+|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSL--TDDPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEE--EecCCCCEEEEEEcCCCHHHCEEEE
Confidence 4678999999999865 345678999854211 00122222 2222223458999999999999999
Q ss_pred EEEEcCC
Q psy670 388 CNIKNFH 394 (540)
Q Consensus 388 C~a~n~~ 394 (540)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9987754
No 316
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.92 E-value=6.9e-05 Score=55.75 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=49.2
Q ss_pred CCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 117 GDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 117 G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
|+.+.|.|.+ .++|.+.+.|+.++..+.............+.....+.|.+.....++...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 7899999988 67899999999998877221111111122223334568888877777888999999987643
No 317
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.91 E-value=9e-05 Score=58.33 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=49.5
Q ss_pred CceEEeeCCCeEEEEEEEEcc-CCCeEEEEECC--EE---c---------cCCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670 318 PKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEG--KE---L---------QQTDRISWNVTLKGDKYHIRLEVKDPRKED 382 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 382 (540)
+..+.+..|++++|.|..... ....+.|++.. .. + ....++.+. .+......+|.|.+++.+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~--~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVN--FQKAQKSISLTISALQLED 83 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEE--EeccCCEEEEEECCCCHHH
Confidence 455678899999999998754 45679999832 11 0 001222222 1122224589999999999
Q ss_pred CeeEEEEEEcC
Q psy670 383 TGLYKCNIKNF 393 (540)
Q Consensus 383 ~G~Y~C~a~n~ 393 (540)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999853
No 318
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.91 E-value=0.00012 Score=51.38 Aligned_cols=66 Identities=29% Similarity=0.503 Sum_probs=47.2
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
+.|.|.+.+.+...+.|++++......... ..............|.|.++..+|+|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999977777799999988766443221 111122234445689999999999999999998765
No 319
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.90 E-value=0.00011 Score=57.73 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=48.2
Q ss_pred CceeecCCCCeEEEEEEecccC----CCeEEEEeCCE------Eee-c---------cCce--EEEEecCCCeEEEEEEE
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP----RPEVKWFKADK------LVK-E---------SSKI--KIIVNEQDDTYEIICEI 271 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~~------~l~-~---------~~~~--~~~~~~~~~~~~~~l~i 271 (540)
|..+.+.+|+.++|.|...... ...+.|++... .+. - ..++ +...........+.|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4456677899999999986422 24699987321 110 0 0000 00111111122367999
Q ss_pred eCCCCCCcEEEEEEEEcCCC
Q psy670 272 TDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~ 291 (540)
.+++.+|+|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999997544
No 320
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.90 E-value=0.00013 Score=54.33 Aligned_cols=78 Identities=14% Similarity=0.274 Sum_probs=49.0
Q ss_pred CeEEEEEEEEccC-CCeEEEEECCE----Ecc--C---C----Cce--EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 327 KLVVMECKVKAKP-MPEIVWFHEGK----ELQ--Q---T----DRI--SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 327 ~~v~l~C~~~~~p-~~~i~W~~~~~----~~~--~---~----~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
++++|.|.....+ ..+|.|.+... .+. . . ..+ +.... .......+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 3588999986433 34789987421 111 0 0 011 11111 11112348999999999999999997
Q ss_pred E-cCCeeeEEEEEEEE
Q psy670 391 K-NFHGELNANLTLNI 405 (540)
Q Consensus 391 ~-n~~g~~~~~~~l~V 405 (540)
. ...|+...+..|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 5 46788888888876
No 321
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.90 E-value=0.0002 Score=55.19 Aligned_cols=72 Identities=18% Similarity=0.364 Sum_probs=46.1
Q ss_pred ecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcE-EEEEEEEcCCC
Q psy670 218 PNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSG-TYRCNVKNEFG 291 (540)
Q Consensus 218 ~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g-~y~C~~~~~~~ 291 (540)
....|+.++|.|.+.+ +|. ..++|++||..+..... ......+++++ .+.|.+... ..|.+ .|+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCC
Confidence 3446888999999998 564 58999999999864322 22222222233 345666543 34434 69999998643
No 322
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.90 E-value=0.00013 Score=55.45 Aligned_cols=78 Identities=15% Similarity=0.337 Sum_probs=48.0
Q ss_pred eEEEEEEecccC---CCeEEEEeCCE-----Eee---c--cC----c--eEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 224 LIQMKCKCSAKP---RPEVKWFKADK-----LVK---E--SS----K--IKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 224 ~~~l~C~~~~~p---~~~v~W~~~~~-----~l~---~--~~----~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
+++|.|...... ...|.|++... .+. . .. . .+.............|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 588999986433 33799998321 110 0 00 0 0111111112234579999999999999999
Q ss_pred EEEc-CCCCeeeeEEEEE
Q psy670 285 NVKN-EFGESNANLNLNI 301 (540)
Q Consensus 285 ~~~~-~~~~~~~~~~l~v 301 (540)
.+.+ +.|.....+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6676666666655
No 323
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.88 E-value=0.00016 Score=54.08 Aligned_cols=67 Identities=19% Similarity=0.401 Sum_probs=41.9
Q ss_pred CCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 326 GKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 326 g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
++.++|.|.+.|+ |.. .+.|.++|..+.............++.+ .+.|.+.. .+.+.|+|++.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence 6789999999995 543 8899999964433221111111222222 33566544 377899999988654
No 324
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.88 E-value=0.00016 Score=51.57 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=43.2
Q ss_pred EEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEE-EecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 329 VVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNV-TLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 329 v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~-~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
++|.|.+.|+ |. ..+.|+++|.++.......... ..++.. ..+.|.+......+...|+|.|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999985 54 4899999999754432211111 122222 24467777666677789999998764
No 325
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.85 E-value=0.00017 Score=50.68 Aligned_cols=66 Identities=24% Similarity=0.426 Sum_probs=47.4
Q ss_pred EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
+.|.|.+.+.+...+.|++++.......................|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988777899999988776543321111112223334589999999999999999998876
No 326
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.84 E-value=5.2e-05 Score=58.16 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=45.0
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCE----e---e---cCCCceE-------EEEeecCcceEEEEEEEcCCCCCCC
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTK----V---I---EDTGRIK-------MSKKSIGKDTYLLRLEINNPTKDDG 175 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~----~---~---~~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~ 175 (540)
.+.+|++|+|.|.+.......+.|||... . + ....... ..............|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 46789999999998555456799998431 1 1 0000000 0000001112345899999999999
Q ss_pred eEEEEEEEc
Q psy670 176 GNYRCNACN 184 (540)
Q Consensus 176 G~Y~C~~~~ 184 (540)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999763
No 327
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.84 E-value=5.4e-05 Score=57.39 Aligned_cols=75 Identities=9% Similarity=0.170 Sum_probs=51.0
Q ss_pred cccCCCeEEEEEEEeec-C-CCceEEEeCCEeecCCCc-eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 113 IHQDGDLLVMECVLEAS-P-MPDIIWYQGTKVIEDTGR-IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
....++.++|.|.+.|+ | ...+.|++||+.+..+.. ........+.....+.|.+..-..++...|+|.+.+...
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 44567889999999774 5 448999999998854311 111122234445556788877666678899999988653
No 328
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.83 E-value=0.00027 Score=52.59 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=43.7
Q ss_pred CCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 221 SGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 221 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
.|+..+|.|.+.| +|. ..++|.++|..+...........+.++++. +.|.+.. ++...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 3566799999999 564 479999999987654322222233344443 3455543 45569999999864
No 329
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.82 E-value=0.00021 Score=52.21 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=50.1
Q ss_pred cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEE-eecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSK-KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
..++.++|.|.+.++ |.. .|.|+++|..+.......... ...+.....+.|.+. ..+...|+|.+.+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 448999999999875 544 799999999887654333222 334455555677777 5666799999988654
No 330
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.82 E-value=8.7e-05 Score=58.41 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=47.6
Q ss_pred CccccCCCeEEEEEEEeec-CCCceEEEeC--CEe---e-c--------CCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQG--TKV---I-E--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~--~~~---~-~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 175 (540)
.+.+.+|++++|.|..... ....+.|||. +.. + . ...++.+... .....++|.|.+++.+|+
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISALQLEDS 84 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECCCCHHHC
Confidence 4568899999999998543 4557999983 211 1 0 0122322211 112245899999999999
Q ss_pred eEEEEEEEc
Q psy670 176 GNYRCNACN 184 (540)
Q Consensus 176 G~Y~C~~~~ 184 (540)
|.|.|.+..
T Consensus 85 g~Y~C~~~~ 93 (116)
T cd07706 85 AKYFCALST 93 (116)
T ss_pred EEEEEEEEC
Confidence 999999875
No 331
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.81 E-value=0.00028 Score=52.70 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=44.9
Q ss_pred CCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 220 ESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 220 ~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
..|+.++|.|.+.+ +|.. +++|+++|..+...........+.++++...-.+ .+...+...|+|.+.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L-~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVML-ETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEE-EEcCCCCCEEEEEEEeCCC
Confidence 35788999999999 5654 7999999998765422122222233344432222 2233456699999998654
No 332
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.81 E-value=4.9e-05 Score=57.59 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=44.9
Q ss_pred EEecCCCeEEEEEEEeeecC--CceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCCeeEEE
Q psy670 464 VTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKII 532 (540)
Q Consensus 464 ~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~ 532 (540)
.....++.++|.|.|.|+-+ .+|+|++||..+..+ ..........+|+|+....+.-...+++.++-+
T Consensus 12 ~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 12 EELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSG-VQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred HHHccCCCcEEEEEEEeEECCCCEEEEEECCEECccc-EeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 34456788999999999543 388999999998643 222223344578888777776666655444333
No 333
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.80 E-value=4.5e-05 Score=57.92 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=41.5
Q ss_pred ecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEec--CCeEEEEEEeeeeeeeeCCee
Q psy670 466 ISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQV--KDVSMNFELWLGIVEKRGPSI 529 (540)
Q Consensus 466 ~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~--~~g~y~c~~~~~~~~~~~~~~ 529 (540)
+..|..++|.|.+.|+.+. .++|+|||..+............. .+|+|+....+.....++..+
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~ 80 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAG 80 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCC
Confidence 3347789999999996554 779999999876543222222222 258888777776555444333
No 334
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.80 E-value=9.7e-05 Score=56.12 Aligned_cols=74 Identities=9% Similarity=0.187 Sum_probs=48.3
Q ss_pred ccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEee----cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 114 HQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKS----IGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
+..|+.++|.|.+.|+ |.. .+.|+++|+.+............ .+.....+.|.|..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 4457889999999885 443 68999999987543211111111 13344456777765555567789999988653
No 335
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.78 E-value=0.00036 Score=52.11 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=46.9
Q ss_pred cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
..|+.++|.|.+.|+ |.. .+.|+++|+.+... .......+..+.....+.|.+.. .+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence 467889999999885 554 79999999987654 11222222223344445666543 4667999999986543
No 336
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.78 E-value=0.0003 Score=57.95 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=59.3
Q ss_pred eeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeecc--Cc--------eEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 216 IIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKES--SK--------IKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~--~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
...+.+|++++|.|... +...+.++|+|....+..- .. .+... .......+.|+|.+++.+|+|.|+|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~-mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY-LSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE-eccCCCcceEEEEeCChhhCeEEEE
Confidence 45678899999999985 5567789999964322110 00 01110 0112233589999999999999999
Q ss_pred EEEc-CCC-CeeeeEEEEEee
Q psy670 285 NVKN-EFG-ESNANLNLNIEA 303 (540)
Q Consensus 285 ~~~~-~~~-~~~~~~~l~v~~ 303 (540)
.... +.| ..+....|.|..
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEecCCCCCceeEEEEEEEc
Confidence 8774 566 677788888876
No 337
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.78 E-value=0.00015 Score=54.18 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=47.7
Q ss_pred ccccccceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670 3 FPKELKSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE 81 (540)
Q Consensus 3 ~~~~~~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~ 81 (540)
+++...+|.+. |+|+ +.|+|+++ +............++ ...-.+.|.+.....+|.-.|+|++.+..-.
T Consensus 15 ~~~~va~C~s~~gkP~------a~ItW~~~---~~~~~~~~~~~~~~g-~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 15 EPVTVATCVSANGKPP------ATISWETT---LGGEAETQSKENPNG-TVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CccEEEEEECCCCcCC------CEEEEEeC---CCCcceeEeecCCCC-CEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 56778899995 8888 99999997 211111111122222 3445678999888888888999999987644
Q ss_pred e
Q psy670 82 G 82 (540)
Q Consensus 82 ~ 82 (540)
.
T Consensus 85 ~ 85 (95)
T cd05719 85 E 85 (95)
T ss_pred C
Confidence 3
No 338
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.78 E-value=0.00011 Score=56.68 Aligned_cols=69 Identities=19% Similarity=0.371 Sum_probs=44.6
Q ss_pred cccCCCeEEEEEEEeec-CCCceEEEeCCEe---------e--cCC-----------CceEEEEeecCcceEEEEEEEcC
Q psy670 113 IHQDGDLLVMECVLEAS-PMPDIIWYQGTKV---------I--EDT-----------GRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~---------~--~~~-----------~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
.+++|++++|.|.+.+. ....+.|||.... + ... .++.... ......+.|+|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence 46789999999998654 3457999984221 0 000 1111111 1122235799999
Q ss_pred CCCCCCeEEEEEEEc
Q psy670 170 PTKDDGGNYRCNACN 184 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~ 184 (540)
++.+|+|.|.|...+
T Consensus 79 ~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 79 VKPEDSGTYFCMTVG 93 (107)
T ss_pred CCHHHCEEEEEeEcC
Confidence 999999999999753
No 339
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.75 E-value=0.0004 Score=51.97 Aligned_cols=67 Identities=22% Similarity=0.468 Sum_probs=42.1
Q ss_pred CCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 222 GTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 222 g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
++.++|.|.+.| +|.. .++|++++..+...........+.++.+. +.|.+.. .+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence 678999999999 4554 89999999643322211111222333433 3555543 377899999988643
No 340
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.74 E-value=0.00018 Score=53.46 Aligned_cols=74 Identities=8% Similarity=0.080 Sum_probs=49.6
Q ss_pred ccccccceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670 3 FPKELKSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE 81 (540)
Q Consensus 3 ~~~~~~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~ 81 (540)
.|...++|.+. |.|. +.|+|+++.. ...........++ +..-.+.|.+.....+|...|+|++.+....
T Consensus 15 ~~~~va~C~s~~gkPa------a~IsW~~~~~---g~~~~~~~~~~~g-t~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 15 IPVPVAKCVSANGRPP------ARISWSSTLG---GNANTTSKENGDG-TVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred CccEEEEEEcCCCCCC------cEEEEEcCCC---CCeeEEEEeCCCC-CEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 57778899877 8888 9999999822 1111111122222 3345678999888888888999999997654
Q ss_pred eeeeE
Q psy670 82 GSSTV 86 (540)
Q Consensus 82 ~~~~~ 86 (540)
....+
T Consensus 85 ~~~~~ 89 (95)
T cd07703 85 EPQLL 89 (95)
T ss_pred CCeEE
Confidence 44333
No 341
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.74 E-value=0.00019 Score=53.22 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670 468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIV 522 (540)
Q Consensus 468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~ 522 (540)
.|+..+|.|.|.|+-++ .++|+|||..+. +. ....+-...+|+|.....+.-.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~-~~~~~~p~~d~tyq~~s~l~~~ 68 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KV-EQSDLSFSKDWTFYLLKSTEFT 68 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-Cc-EECcEEECCCCCEEEEEEEEEC
Confidence 46677999999996544 789999999986 32 2223444556666655554333
No 342
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.73 E-value=0.00012 Score=55.66 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=45.7
Q ss_pred EeeCCCeEEEEEEEEcc--CCCeEEEEECCE--Ecc----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 322 SEQGGKLVVMECKVKAK--PMPEIVWFHEGK--ELQ----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
.+.+|++++|.|.+.+. ....+.|++... ... .....++....++ ....|.|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG--NTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC--CEEEEEECCCChhhCEEEE
Confidence 35689999999998765 455799988322 110 0000112222222 3458999999999999999
Q ss_pred EEEEcC
Q psy670 388 CNIKNF 393 (540)
Q Consensus 388 C~a~n~ 393 (540)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 998753
No 343
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.72 E-value=0.00031 Score=52.26 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=36.0
Q ss_pred CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeee
Q psy670 468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGI 521 (540)
Q Consensus 468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~ 521 (540)
.|+..+|.|.+.|+-+. .++|++||..+..+. ....+....+|+|.....+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~-~~~~~~~~~Dgty~~~s~L~v 68 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV-SETRYYPRQDLSFQKFSYLNF 68 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCce-EEeeeEeCCCCcEEEEEEEEE
Confidence 36668999999995443 889999999886542 223344555677776555543
No 344
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.69 E-value=0.00061 Score=50.48 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=45.7
Q ss_pred cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
..|+..+|.|.+.|+ |.. .+.|+|||+.+..........+..+.....+.|.+. ..+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence 357778999999885 443 799999999886222222233333444444566665 456778999998854
No 345
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.68 E-value=0.00022 Score=53.35 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=44.3
Q ss_pred ceeecCCCCeEEEEEEeccc--CC-CeEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcC
Q psy670 215 RIIPNESGTLIQMKCKCSAK--PR-PEVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~--p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
....+..|+.++|.|.+.++ |. ..|+|.++++...... ......+.++++. +.|.+......+.-.|+|.+.+.
T Consensus 7 s~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~-~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 7 SPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS-IQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred CHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE-ecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 33445568999999999987 43 3689999875332111 1111122333333 34555443333445899999987
Q ss_pred CC
Q psy670 290 FG 291 (540)
Q Consensus 290 ~~ 291 (540)
..
T Consensus 86 ~l 87 (96)
T cd07696 86 DL 87 (96)
T ss_pred CC
Confidence 53
No 346
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.67 E-value=0.00054 Score=51.15 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=47.9
Q ss_pred CCCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 116 DGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 116 ~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
......+.|.+ .|+|.+.|.|+++ +.............+.....+.|.+.....+|+-.|+|++.+.....
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 34457889999 6889999999997 11111111222222334455688888888888889999999876443
No 347
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.64 E-value=0.00014 Score=56.18 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=40.4
Q ss_pred EEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeC
Q psy670 463 VVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRG 526 (540)
Q Consensus 463 ~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~ 526 (540)
...+..++.++|.|.+.|+-+. +|+|+|||..+..+..........++|+|+....+.-...++
T Consensus 12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w 77 (115)
T cd05769 12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW 77 (115)
T ss_pred hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh
Confidence 3344467789999999995444 889999999887543211112222237777666665555443
No 348
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.64 E-value=0.00058 Score=49.87 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=47.4
Q ss_pred CCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 325 GGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 325 ~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
.++.++|.|.+.++ |.. .|.|+++|..+.............++.+ .+.|.+. ..+...|+|++.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 48899999999984 544 6899999999876544333332233333 3356665 55667899999987543
No 349
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.63 E-value=0.00033 Score=54.18 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=51.6
Q ss_pred ccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceE-EEEee-cCcceEEEEEEEcCCCCCC-CeEEEEEEEcCCce
Q psy670 114 HQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIK-MSKKS-IGKDTYLLRLEINNPTKDD-GGNYRCNACNSIGE 188 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~ 188 (540)
+..++.++|.|.+.++ |.. .+.|+|||..+..+.... ..... .+.....+.|.|......+ ...|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 4456789999999875 553 899999999876542211 11111 1334445678888665544 67999999987655
Q ss_pred eEEE
Q psy670 189 SNAN 192 (540)
Q Consensus 189 ~~~~ 192 (540)
....
T Consensus 95 ~~~~ 98 (115)
T cd05769 95 DTDK 98 (115)
T ss_pred ccee
Confidence 4433
No 350
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.62 E-value=0.00072 Score=50.45 Aligned_cols=75 Identities=12% Similarity=0.256 Sum_probs=44.8
Q ss_pred CeEEEEEEecc-cCCCeEEEEeCCE----Eeec-----------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 223 TLIQMKCKCSA-KPRPEVKWFKADK----LVKE-----------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 223 ~~~~l~C~~~~-~p~~~v~W~~~~~----~l~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+.++|.|.... .....|+|.|... .+.. .-..++.... ......+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEE
Confidence 35789999864 3344688988432 1110 0001111111 1113468999999999999999988
Q ss_pred Ec-CCCCeeeeEE
Q psy670 287 KN-EFGESNANLN 298 (540)
Q Consensus 287 ~~-~~~~~~~~~~ 298 (540)
.. +.|...+.+.
T Consensus 80 ~t~P~g~~~~~i~ 92 (96)
T cd05889 80 VTYPQGSWEKVIE 92 (96)
T ss_pred EeCCCCCeEEEEE
Confidence 75 5666555443
No 351
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.62 E-value=0.00057 Score=53.94 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=48.3
Q ss_pred CceEEeeCCCeEEEEEEEEccC------CCeEEEEECCEE------cc--CC-----Cce--EEEEEecCCeeEEEEEEc
Q psy670 318 PKIRSEQGGKLVVMECKVKAKP------MPEIVWFHEGKE------LQ--QT-----DRI--SWNVTLKGDKYHIRLEVK 376 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p------~~~i~W~~~~~~------~~--~~-----~~~--~~~~~~~~~~~~~~L~i~ 376 (540)
|..+.+.+|+.++|.|...... ...+.|++.... +. .. ..+ +.....+.....++|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4556788999999999875322 245899985321 00 00 011 111111223334589999
Q ss_pred CCCCCCCeeEEEEEEcC
Q psy670 377 DPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 377 ~~~~~d~G~Y~C~a~n~ 393 (540)
+++.+|+|.|.|++...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 352
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.61 E-value=0.00051 Score=51.22 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=42.0
Q ss_pred eCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCeeE--EEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 324 QGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
..+..++|.|.+.|+ |.. .++|.++|..+......... ..+++.+. +.|.+..-. ....|+|.+.+..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~-~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEK-DKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccE-ecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 345678999999995 433 68999999987654322222 22233443 355554322 3345999998854
No 353
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.60 E-value=0.00038 Score=51.92 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=45.4
Q ss_pred CeEEEEEEEee-cCCCceEEEeCCE----eec-----------C--CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670 118 DLLVMECVLEA-SPMPDIIWYQGTK----VIE-----------D--TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179 (540)
Q Consensus 118 ~~v~l~C~~~~-~p~~~v~W~~~~~----~~~-----------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 179 (540)
+.++|.|.... ....++.|.|... .+. . ..|..+... ....++|.|.+++.+|+|.|+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~----~~~d~sI~i~nvt~~D~G~Y~ 76 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNS----TREDMSLSFNNATEEDVGLYC 76 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecC----CCCccEEEEcCCCcccCEEEE
Confidence 35899999843 2334789988421 110 0 022222211 112358999999999999999
Q ss_pred EEEEcC-CceeEEEEEE
Q psy670 180 CNACNS-IGESNANIAL 195 (540)
Q Consensus 180 C~~~~~-~~~~~~~~~l 195 (540)
|.+... .|.....+.|
T Consensus 77 C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 77 CSLVTYPQGSWEKVIEV 93 (96)
T ss_pred EEEEeCCCCCeEEEEEE
Confidence 999754 5655655554
No 354
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.59 E-value=0.00038 Score=53.73 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=45.0
Q ss_pred EeeCCCeEEEEEEEEcc-CCCeEEEEECCEE---c--------cC-----------CCceEEEEEecCCeeEEEEEEcCC
Q psy670 322 SEQGGKLVVMECKVKAK-PMPEIVWFHEGKE---L--------QQ-----------TDRISWNVTLKGDKYHIRLEVKDP 378 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~---~--------~~-----------~~~~~~~~~~~~~~~~~~L~i~~~ 378 (540)
.+.+|++++|.|.+.+. ....+.|++.... . .. ..++.. ..........|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~--~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSI--RVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEE--EEECCCCEEEEEECCC
Confidence 36789999999998764 3457999984221 0 00 011211 1122223447999999
Q ss_pred CCCCCeeEEEEEEc
Q psy670 379 RKEDTGLYKCNIKN 392 (540)
Q Consensus 379 ~~~d~G~Y~C~a~n 392 (540)
+.+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999854
No 355
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.58 E-value=0.00049 Score=51.21 Aligned_cols=75 Identities=13% Similarity=0.225 Sum_probs=48.1
Q ss_pred CeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 118 DLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 118 ~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
..+.++|.+ .|.|.+.|+|+++.. ............+.....+.|.+.....+|+..|+|++.+........+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~---g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLG---GNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCC---CCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 347899988 578999999998721 111111111112233445688888888888899999999976544444333
No 356
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.52 E-value=0.00085 Score=50.03 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=41.8
Q ss_pred cCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEE--EEEEeCCCCCCcEEEEEEEEcCC
Q psy670 219 NESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEI--ICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
+..++.++|.|.+.+ +|. ..++|.++|..+...........+.+ ++.. .|.+..- +....|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~--~~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKD--SLGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECch--hCCCeEEEEEEECC
Confidence 334667899999999 554 36899999998754432222222222 4443 4444332 13346999999853
No 357
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.48 E-value=0.00074 Score=53.28 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=47.9
Q ss_pred CceeecCCCCeEEEEEEecccC------CCeEEEEeCCEE------ee-cc-C-----c--eEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP------RPEVKWFKADKL------VK-ES-S-----K--IKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p------~~~v~W~~~~~~------l~-~~-~-----~--~~~~~~~~~~~~~~~l~i~ 272 (540)
|..+.+.+|+.++|.|...... ...+.|++.... +. .. . . .++..........+.|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 5566788999999999875321 345899985321 11 00 0 0 0111111223334689999
Q ss_pred CCCCCCcEEEEEEEEcC
Q psy670 273 DPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~ 289 (540)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988764
No 358
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.47 E-value=0.00093 Score=49.91 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=42.3
Q ss_pred CCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEe-cCCe-eEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 325 GGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTL-KGDK-YHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~-~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
.++.++|.|.+.++-+ ..|+|.++|.. ............ ++.. ..+.|.+..........|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4667999999999543 37899999998 333211111122 2322 23456665543334567999999875
No 359
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.46 E-value=0.001 Score=52.17 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=47.3
Q ss_pred CceEEeeCCCeEEEEEEEEccC--CCeEEEEECC--E-E--c---cC-CC--------ceEEEEEecCCeeEEEEEEcCC
Q psy670 318 PKIRSEQGGKLVVMECKVKAKP--MPEIVWFHEG--K-E--L---QQ-TD--------RISWNVTLKGDKYHIRLEVKDP 378 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~~--~-~--~---~~-~~--------~~~~~~~~~~~~~~~~L~i~~~ 378 (540)
|....+.+|++++|.|...... ...+.|++-. . + + .. .. ..++....+.......|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4456688999999999976533 4568999832 1 1 1 00 00 0112222222223347999999
Q ss_pred CCCCCeeEEEEEEc
Q psy670 379 RKEDTGLYKCNIKN 392 (540)
Q Consensus 379 ~~~d~G~Y~C~a~n 392 (540)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998865
No 360
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.44 E-value=0.00093 Score=49.55 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=52.4
Q ss_pred CccccCCCeEEE-EEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 111 PTIHQDGDLLVM-ECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 111 ~~~v~~G~~v~l-~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
...+.+|+.+.+ .|.+ .|.|.+.|+|+.+..... ......+..+.-...+.|.+...+.+|+-.++|.+.+....
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 445678899988 9988 678999999998633221 11222222334445568888888888899999999987543
No 361
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.38 E-value=0.00081 Score=50.21 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=35.3
Q ss_pred CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeee
Q psy670 468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKR 525 (540)
Q Consensus 468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~ 525 (540)
.++.++|.|.+.|+-+. +|+|+|||.. ..+.. ........+|+|+....+.-...+
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~-~~~~~~~~dgty~~~s~L~v~~~~ 72 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVK-TYPAVLQSGGLYTASSQLTVPASE 72 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcE-ECCCEeCCCCCEEEEEEEEEeHHH
Confidence 46679999999996443 8899999998 33221 111122236777776666544444
No 362
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.34 E-value=0.00046 Score=51.50 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=43.8
Q ss_pred eeCCCeEEEEEEEEccC--C-CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 323 EQGGKLVVMECKVKAKP--M-PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 323 ~~~g~~v~l~C~~~~~p--~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
...+..++|+|.+.++. . ..+.|.++|.. ...........++. ...+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44678899999999854 2 37899999875 11110111112222 2234677765555555679999988753
No 363
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.34 E-value=0.00074 Score=51.74 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=44.3
Q ss_pred eeCCCeEEEEEEEEccCCCeEEEEECCEE----c---c---CCC----------ceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKE----L---Q---QTD----------RISWNVTLKGDKYHIRLEVKDPRKED 382 (540)
Q Consensus 323 ~~~g~~v~l~C~~~~~p~~~i~W~~~~~~----~---~---~~~----------~~~~~~~~~~~~~~~~L~i~~~~~~d 382 (540)
+.+|++++|.|.+.......+.|++.... . . ... ..++..... .....|.|.+++.+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~sD 80 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS--SNSFVLTLKNFQKEN 80 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec--CCEEEEEECCCCHHH
Confidence 56899999999986554567999984321 1 0 000 011111111 234589999999999
Q ss_pred CeeEEEEEEc
Q psy670 383 TGLYKCNIKN 392 (540)
Q Consensus 383 ~G~Y~C~a~n 392 (540)
+|.|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999998764
No 364
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.33 E-value=0.00098 Score=52.31 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=46.2
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--E-E--e---ecc-Cc--------eEEEEecCCCeEEEEEEEeCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--K-L--V---KES-SK--------IKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~-~--l---~~~-~~--------~~~~~~~~~~~~~~~l~i~~~ 274 (540)
|....+.+|++++|.|...... ...+.||+.. + + + ... .. .++............|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4456678999999999986532 4569999832 1 1 1 000 00 011111111122346999999
Q ss_pred CCCCcEEEEEEEEc
Q psy670 275 IGPDSGTYRCNVKN 288 (540)
Q Consensus 275 ~~~d~g~y~C~~~~ 288 (540)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999997764
No 365
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.33 E-value=0.13 Score=47.56 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=91.6
Q ss_pred ceEEeeCCCeEEEEEEEEc--c-CCCeEEEEECCEEccCC-----------------CceEEEEEe--cCCeeEEEEEEc
Q psy670 319 KIRSEQGGKLVVMECKVKA--K-PMPEIVWFHEGKELQQT-----------------DRISWNVTL--KGDKYHIRLEVK 376 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~--~-p~~~i~W~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~L~i~ 376 (540)
....+..|..+.|.|...- + ....+.|...|-++.+. ..+.+.... ..+...++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3455667999999999863 2 34468998766554321 112111110 011224589999
Q ss_pred CCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeece
Q psy670 377 DPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPV 456 (540)
Q Consensus 377 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 456 (540)
.+.-+.+|-|+|+|........+..-|.|.. ...
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d----------------------------------------------~V~ 385 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVAD----------------------------------------------HVF 385 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEecc----------------------------------------------EEE
Confidence 9999999999999988766666666666654 111
Q ss_pred eecCCcEEEecCCC-eEEEEEEEeee--cCCceEEEecCeecCCCCeEEE--EEEecCCeEEEEEEeeeeeeeeC
Q psy670 457 IREVPKVVTISKKK-TVVIECKVMSM--YEPSVTWMKEKNTVKEDNKHVV--HIEQVKDVSMNFELWLGIVEKRG 526 (540)
Q Consensus 457 i~~~~~~~~~~~g~-~~~l~C~v~g~--p~~~v~W~~~~~~l~~~~~~~~--~~~~~~~g~y~c~~~~~~~~~~~ 526 (540)
+. ...+|. .-.+.|-+-.. .++++.|.-+|........-.+ .-.+.-+|-|...+.|.+-.+++
T Consensus 386 f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~d 454 (500)
T PHA02914 386 FK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKD 454 (500)
T ss_pred EE------EEeccCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccCcc
Confidence 11 122333 34467887543 3458999999877654432111 11222356666666665555454
No 366
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.26 E-value=0.00057 Score=45.67 Aligned_cols=51 Identities=22% Similarity=0.470 Sum_probs=35.1
Q ss_pred CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
.|..|+|+|.... ..+.|.+++..+..... .+.+.+.. +++|.|+|.+.+.
T Consensus 6 sGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~--------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE--------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCC---CCceEEeCCccCCCCCc--------------eEEeeccC-CCCceEEEEeCCC
Confidence 5899999997542 23999999865544222 34444444 7899999999643
No 367
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.24 E-value=0.0011 Score=44.68 Aligned_cols=60 Identities=23% Similarity=0.454 Sum_probs=41.0
Q ss_pred CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
..++|.|+|.+ ...|.|++ |..+..... .+|.+.....+-.|.|.|.+++ ......|.
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~-------------~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQ 62 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVSN-------------TLLDLGSRINDPRGTYSCKESE----PNKEKTLQ 62 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Ccccccccc-------------cEEeccCcccCCCcceEecCcc----CCCcEEEE
Confidence 35679999965 24599999 655543221 1788888888889999999877 23344455
Q ss_pred EE
Q psy670 405 IE 406 (540)
Q Consensus 405 V~ 406 (540)
|.
T Consensus 63 Vy 64 (69)
T cd07691 63 VY 64 (69)
T ss_pred EE
Confidence 54
No 368
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.23 E-value=0.00066 Score=45.39 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=35.3
Q ss_pred CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
.|.+|+|+|...+ ..+.|++++..+..... .+.+.+.. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCC---CCceEEeCCccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence 5889999997532 23999999866654222 34444444 8899999998643
No 369
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.18 E-value=0.0013 Score=44.34 Aligned_cols=50 Identities=20% Similarity=0.541 Sum_probs=36.0
Q ss_pred CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 184 (540)
..++|.|+|.+ ..+|.|+++....... . .+|.+.....+-.|.|.|.+++
T Consensus 5 ~~~~V~L~C~~----~tsi~W~kG~~~~~~~-~--------------~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKKGKEILEVS-N--------------TLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEecCccccccc-c--------------cEEeccCcccCCCcceEecCcc
Confidence 44679999965 2569999944333221 1 1788888888999999998866
No 370
>PHA02633 hypothetical protein; Provisional
Probab=97.16 E-value=0.0011 Score=43.39 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=33.5
Q ss_pred EEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecC
Q psy670 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED 94 (540)
Q Consensus 57 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 94 (540)
.|.|-++..+|+|.|.|..+|.......++.|+|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 79999999999999999999988888888888887543
No 371
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.15 E-value=0.0015 Score=47.38 Aligned_cols=61 Identities=21% Similarity=0.426 Sum_probs=38.0
Q ss_pred eEEEEEEEeecCCC--ceEEEeCCE--e---ecC-------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670 119 LLVMECVLEASPMP--DIIWYQGTK--V---IED-------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY 178 (540)
Q Consensus 119 ~v~l~C~~~~~p~~--~v~W~~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 178 (540)
++.|.|.+...... .+.|++... . +.. ..++..... ......+|.|.+++.+|+|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~i~~~~~~D~G~Y 77 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKD---TSKNDVSLTISNLRVEDTGTY 77 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEec---CcCCEEEEEEcCCCHHHCEEE
Confidence 47899998654443 799998431 1 110 112221111 113346899999999999999
Q ss_pred EEEE
Q psy670 179 RCNA 182 (540)
Q Consensus 179 ~C~~ 182 (540)
.|.+
T Consensus 78 ~C~v 81 (81)
T smart00406 78 YCAV 81 (81)
T ss_pred EEcC
Confidence 9964
No 372
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.11 E-value=0.00088 Score=49.97 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=42.9
Q ss_pred CcEEEecCCCeEEEEEEEeeec--C-CceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCCeeEEEE
Q psy670 461 PKVVTISKKKTVVIECKVMSMY--E-PSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIY 533 (540)
Q Consensus 461 ~~~~~~~~g~~~~l~C~v~g~p--~-~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~ 533 (540)
|....+..++.++|.|.+.|+. . ..|+|.++|.. +. .........+|+|.....+.-..+++..+.-+.
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~---~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt 82 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK---EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA 82 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc---Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence 4334455688999999999954 2 38999999875 11 222223344677776666665555555444433
No 373
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.06 E-value=0.0028 Score=45.90 Aligned_cols=63 Identities=22% Similarity=0.430 Sum_probs=37.9
Q ss_pred eEEEEEEEEccCCC--eEEEEECCE--E---ccC-----------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 328 LVVMECKVKAKPMP--EIVWFHEGK--E---LQQ-----------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 328 ~v~l~C~~~~~p~~--~i~W~~~~~--~---~~~-----------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.++|.|.+.....+ .+.|++... . +.. ....+............+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36799998765443 789988432 0 100 00111222222123345899999999999999996
Q ss_pred E
Q psy670 390 I 390 (540)
Q Consensus 390 a 390 (540)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 374
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.06 E-value=0.0037 Score=46.01 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=43.0
Q ss_pred cCCCCeEEEEEEecc-cCC--CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 219 NESGTLIQMKCKCSA-KPR--PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
+.+|..+++.|.+.+ +|. ..+.|++....+...........+......+.+++...+.++...|+|.|.....
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 468999999999986 665 5799998666654432111000001112223455544444444499999986543
No 375
>KOG0613|consensus
Probab=97.05 E-value=0.0044 Score=65.93 Aligned_cols=260 Identities=16% Similarity=0.117 Sum_probs=143.7
Q ss_pred eeCcceeEEeecceeeeeecCeecccCCceEEEEecCcccee---------------------------eEEEEEEcccc
Q psy670 12 LEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLY---------------------------YLAVLTIKNVQ 64 (540)
Q Consensus 12 ~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~---------------------------~~~~L~i~~~~ 64 (540)
..|.|+ +...|+.+|..+..+..+++....++..+. ...++.|.+..
T Consensus 213 s~gqp~------~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~ 286 (1205)
T KOG0613|consen 213 SAGQPE------PLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDG 286 (1205)
T ss_pred ecCCCc------cchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccC
Confidence 447777 899999999988877777766554431111 11234455555
Q ss_pred cCCCeeEEEEEEccCcceeeeEEEEEeecCCcc-----ccCCCCCCCCC-----CCCccccCCCeEEEEEEEeecCCCc-
Q psy670 65 KSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKL-----KVPGGKAPRFP-----KKPTIHQDGDLLVMECVLEASPMPD- 133 (540)
Q Consensus 65 ~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~-----~i~~~~~~~~~-----~~~~~v~~G~~v~l~C~~~~~p~~~- 133 (540)
.++.+.|+|...+..+.....+...+....... ......++..+ ...+....+..+++.|...+.+.+.
T Consensus 287 ~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~ 366 (1205)
T KOG0613|consen 287 PEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDE 366 (1205)
T ss_pred CccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCch
Confidence 666667777766665554443333322211111 11111111111 1122345677899999998887775
Q ss_pred eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccC
Q psy670 134 IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK 213 (540)
Q Consensus 134 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~ 213 (540)
+.|+.++.....+........ .......+.|..+...+.+.|.|.+.|..|.........+..... +..+.....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~---~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~--gt~~~~~kk 441 (1205)
T KOG0613|consen 367 AQGYHGEEVSSESLGALPCPV---GTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP--GTQPPKFKK 441 (1205)
T ss_pred heeeccccccccccccccccc---ccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC--CCCCccccc
Confidence 999998766544332211111 112223788999999999999999999988764443333332221 123333333
Q ss_pred CceeecCCC--CeEEEEEEecccCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670 214 PRIIPNESG--TLIQMKCKCSAKPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288 (540)
Q Consensus 214 ~~~~~~~~g--~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 288 (540)
....+...+ +.+.+.|...+.+.+ .++|++.+......... .......+|.+.-....+.+.|.-....
T Consensus 442 ~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~------l~r~~~tslLlk~~~~~~~A~~~~a~~~ 514 (1205)
T KOG0613|consen 442 DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVT------LTRDVLTSLLLKVASLSDGAQYTRALRT 514 (1205)
T ss_pred cccccccccCCcccccccCCCCccccceeEeeccCCccccccccc------ccccchhhheeeccCCCccchhhhhhhc
Confidence 333333333 778899998887644 45666655443221110 0111122566666677788877544433
No 376
>KOG0613|consensus
Probab=97.02 E-value=0.0084 Score=63.88 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=145.7
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (540)
....++...|.|.+.+.+.+.+.|+.+.......... ..+..|.+....+.+.|+|...+..+.....
T Consensus 240 ~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~------------~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~ 307 (1205)
T KOG0613|consen 240 VTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKG------------GNTKTIQNDGPEPELSWTVADKRQGCQDRFK 307 (1205)
T ss_pred cccchhheeeeEEeecCCCchHHHHhcchhhhcccCC------------CccccccccCCccccceeeecccCCccccee
Confidence 4557788999999988888888887765433222110 0156777777788888888888776654333
Q ss_pred EEEEEecC---cCC------CCCCC---eeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEe
Q psy670 193 IALNFQGG---ENG------AGFAP---SFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVN 259 (540)
Q Consensus 193 ~~l~v~~~---~~~------~~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~ 259 (540)
+...+... ... ...++ ........+....+..+++.|...+.+.+. +.|+.++.............
T Consensus 308 v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~- 386 (1205)
T KOG0613|consen 308 VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCP- 386 (1205)
T ss_pred eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccc-
Confidence 33222211 000 00111 112222344556678899999998877665 99999877655443221111
Q ss_pred cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC--CeEEEEEEEEc
Q psy670 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG--KLVVMECKVKA 337 (540)
Q Consensus 260 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g--~~v~l~C~~~~ 337 (540)
........+.+..+...+.+.|.|.+.|..|.........+.... .+..+.............+ +.+.+.|.+.+
T Consensus 387 -~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~--~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s 463 (1205)
T KOG0613|consen 387 -VGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEM--PGTQPPKFKKDVSTTDLLTVKDEITVRTPDSS 463 (1205)
T ss_pred -cccccCcchhhhhcCcccccccccceeccCCcccccchhhccccc--CCCCCccccccccccccccCCcccccccCCCC
Confidence 111222367788888999999999999988865444333333321 1223333333333333333 78889999888
Q ss_pred cCCC--eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 338 KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 338 ~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.+.+ .++|++++-+..... .....+. ..+|.+......|.|.|.-.
T Consensus 464 ~~~~~~~~tt~~~~~~~s~~s---~~l~r~~---~tslLlk~~~~~~~A~~~~a 511 (1205)
T KOG0613|consen 464 TSMPMTTVTTIKDGLPLSDRS---VTLTRDV---LTSLLLKVASLSDGAQYTRA 511 (1205)
T ss_pred ccccceeEeeccCCccccccc---ccccccc---hhhheeeccCCCccchhhhh
Confidence 7755 445555544332211 1111111 11566666777788887433
No 377
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.01 E-value=0.007 Score=44.94 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=47.9
Q ss_pred eeecCCCCeEEE-EEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 216 IIPNESGTLIQM-KCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 216 ~~~~~~g~~~~l-~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
...+.+|+.+.+ .|.+. +.|+++|+|+.+...... .......++.....+.+.+...+.+|...++|.+.+..-
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 345667888888 99985 589999999986332211 111111123334455777766666677799999998744
No 378
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.89 E-value=0.0084 Score=45.68 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=48.2
Q ss_pred ceEEeeCCCeEEEEEEEEccCC---CeEEEEECCE-Ecc------------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670 319 KIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGK-ELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKED 382 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 382 (540)
....+..|+.++|+|.+.|... ..+.|.|... .+. .....+..+..+.+..+..|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 3455677889999999977543 3678887321 110 01122223444555556799999999999
Q ss_pred CeeEEEEE
Q psy670 383 TGLYKCNI 390 (540)
Q Consensus 383 ~G~Y~C~a 390 (540)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999975
No 379
>PHA02633 hypothetical protein; Provisional
Probab=96.86 E-value=0.0033 Score=41.15 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 199 (540)
.|+|-++..+|+|.|.|.++|..-....++.|+|..
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 799999999999999999999888888888888864
No 380
>KOG1480|consensus
Probab=96.83 E-value=0.00037 Score=69.17 Aligned_cols=182 Identities=16% Similarity=0.321 Sum_probs=102.2
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCC----eEEEEeCCEEeeccCceEEEEecC-C--CeEEEEEEEeCCCCCCc
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP----EVKWFKADKLVKESSKIKIIVNEQ-D--DTYEIICEITDPIGPDS 279 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~l~~~~~~~~~~~~~-~--~~~~~~l~i~~~~~~d~ 279 (540)
-|.|+..+....+..|..+.|.|.+...+.. .-.|....... .+...+. . ........|.....++.
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~------~~~~~d~tsg~~~~~~si~Isr~~v~~~ 97 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHE------KLEGTDETSGLGVREVSIDISRQQVETS 97 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccce------eeeccCcccceeEEeeeeeeehhhhhcc
Confidence 4556667777788889999999999654433 23455433221 1111111 1 11112333333333322
Q ss_pred ---EEEEE--EEEcCCCCeee-eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEc
Q psy670 280 ---GTYRC--NVKNEFGESNA-NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKEL 352 (540)
Q Consensus 280 ---g~y~C--~~~~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~ 352 (540)
-.|.| .+....|.... ...+.+.+. ...+...+....+..+..+.+.|.. .+.|...+.|++++..+
T Consensus 98 ~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~------rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~ 171 (909)
T KOG1480|consen 98 GGPEDYWCQCVAWSDDGTVKSRKATVRIAYL------RKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI 171 (909)
T ss_pred cCccceeeeeeeecCCCcchhhhHHHHHHHH------HHhhccChhhheecccccccccccCcccchhhhhhccccCCCC
Confidence 25665 45555552111 011111111 1233444555667778888888875 46788899999998887
Q ss_pred cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEE
Q psy670 353 QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEM 407 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~ 407 (540)
.+...... ..+. .|.+..+...|.|+|+|.|.|..+.. ...+.+.|..
T Consensus 172 ~pd~n~~~--~~d~-----~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 172 DPDANVIR--ASDH-----NLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred Cccccchh--hhcC-----CccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence 76433221 1222 58888999999999999999987643 3344444443
No 381
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.61 E-value=0.014 Score=43.02 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=41.9
Q ss_pred ccCCCeEEEEEEEe-ecCC--CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670 114 HQDGDLLVMECVLE-ASPM--PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184 (540)
Q Consensus 114 v~~G~~v~l~C~~~-~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 184 (540)
+.+|..+++.|.+. ..|. ..+.|+++...+....-... ........-.+.+++.....+|.-+|+|.|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~-~~~ks~~~~~~~vtftptreD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED-MDKKSLETKSLEVTFTPTIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc-cccCCCCCcceeEEEecchhhCCcEEEEEEEE
Confidence 47899999999995 3555 47999998777654421110 00000011112555555555555599999864
No 382
>PHA02982 hypothetical protein; Provisional
Probab=96.43 E-value=0.027 Score=47.05 Aligned_cols=122 Identities=12% Similarity=0.267 Sum_probs=68.8
Q ss_pred ccccCCCeEEEEEEEe-ecCCCceEEEeCCE-eecC--CCceEEEE-----------eecCcceEEEEEEEcCCCCCCCe
Q psy670 112 TIHQDGDLLVMECVLE-ASPMPDIIWYQGTK-VIED--TGRIKMSK-----------KSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~-~~~~--~~~~~~~~-----------~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
+....+++|.|.|... +....+..|+++.. -+.+ .+...+.. .....+...++|+|+++..++.|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 3456799999999973 33344789998542 2321 01111111 11122233469999999999999
Q ss_pred EEEEEEEcCCceeEE-EEEEEEecCcCCCCCCCeeccCCceeecCC-CCeEEEEEEecccCCCeEEEEeCCE
Q psy670 177 NYRCNACNSIGESNA-NIALNFQGGENGAGFAPSFIEKPRIIPNES-GTLIQMKCKCSAKPRPEVKWFKADK 246 (540)
Q Consensus 177 ~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~p~~~v~W~~~~~ 246 (540)
-|+|.+....+.... .--+.|+.. ...+ .+.+ ...-.+.|-+......-..|..+|-
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~------~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKE------DILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecc------eEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 999999986654322 333344210 0001 1112 3345688988654433338887765
No 383
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.10 E-value=0.013 Score=45.79 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=46.2
Q ss_pred eeCCCeEEEEEEEEcc-----CCCeEEEEECCEEccCCCc--eEEEEE-------ecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 323 EQGGKLVVMECKVKAK-----PMPEIVWFHEGKELQQTDR--ISWNVT-------LKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 323 ~~~g~~v~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
..-++.+.|.|.+... +...|.|.++|..+-.-+. ...... ..-....++|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 4468899999998652 2235899998887532111 000000 000001125777664433 799999
Q ss_pred EEEcCCeeeEEEEEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIEMVRF 410 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~~~~ 410 (540)
.+.......+..+.|......|
T Consensus 103 eVt~~~~ege~~i~Lk~~~~sw 124 (130)
T PF08204_consen 103 EVTELSREGETTIELKYRVVSW 124 (130)
T ss_dssp EEEETTEEEEEEEEEEE-----
T ss_pred EEEecCCCceEEEEEEEEEEEE
Confidence 9999988888888888866444
No 384
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.08 E-value=0.036 Score=42.33 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=45.6
Q ss_pred CceeecCCCCeEEEEEEecccC--C-CeEEEEeCCE-Eee------c------cCceEEEEecCCCeEEEEEEEeCCCCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--R-PEVKWFKADK-LVK------E------SSKIKIIVNEQDDTYEIICEITDPIGP 277 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~-~~v~W~~~~~-~l~------~------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 277 (540)
+....+..|..++|.|.+.++. . ..+.|+|... .+. . ..........+.......|.+.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3445567788999999997743 2 4688988421 110 0 001111122233334468999999999
Q ss_pred CcEEEEEEE
Q psy670 278 DSGTYRCNV 286 (540)
Q Consensus 278 d~g~y~C~~ 286 (540)
|.+.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999965
No 385
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=95.78 E-value=1.1 Score=38.47 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=54.9
Q ss_pred ceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEE-cCCCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCe
Q psy670 133 DIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEI-NNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPS 209 (540)
Q Consensus 133 ~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i-~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~ 209 (540)
.+.||.||.++.... +........+..+..++|.+ .+...+..-..+|.+.-.... ....+...+ .|.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~---------~P~ 78 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA---------TPS 78 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc---------ccc
Confidence 589999999886332 11222222234455677888 333444456899998643322 222222111 222
Q ss_pred eccCCc-eeecCCCCeEEEEEEecccC--CCeEEEEeCCEEe
Q psy670 210 FIEKPR-IIPNESGTLIQMKCKCSAKP--RPEVKWFKADKLV 248 (540)
Q Consensus 210 ~~~~~~-~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~l 248 (540)
+...|. .+....|. ..|.+..-| ...+.|.-++...
T Consensus 79 Vy~~P~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 79 VYPKPRVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred eecCCEEEEEecCCE---EEEEcceeeCCCeEEEEEECCccC
Confidence 222221 23344454 458776654 3579999888654
No 386
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.38 E-value=0.012 Score=46.00 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=45.2
Q ss_pred CCCeEEEEEEEeec-----CCCceEEEeCCEeec--CCCceEEEEee------cCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 116 DGDLLVMECVLEAS-----PMPDIIWYQGTKVIE--DTGRIKMSKKS------IGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 116 ~G~~v~l~C~~~~~-----p~~~v~W~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
=+++|.|.|.+... +...+.|.++|+.+- .+......... .....+.++|.+.....- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 47889999999542 223599999887651 11110000000 111123457888775444 89999999
Q ss_pred EcCCceeEEEEEEEEe
Q psy670 183 CNSIGESNANIALNFQ 198 (540)
Q Consensus 183 ~~~~~~~~~~~~l~v~ 198 (540)
.....+....+.|...
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9888777777777764
No 387
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=95.36 E-value=1.6 Score=37.52 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=53.6
Q ss_pred eEEEEeCCEEeeccCceEE-EEec-CCCeEEEEEEE-eCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCe
Q psy670 238 EVKWFKADKLVKESSKIKI-IVNE-QDDTYEIICEI-TDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPT 313 (540)
Q Consensus 238 ~v~W~~~~~~l~~~~~~~~-~~~~-~~~~~~~~l~i-~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~ 313 (540)
.+.|+.||..+........ .... +..+..++|.+ .+...+..-..+|.+.-..... ...+...+ .|.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~---------~P~ 78 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA---------TPS 78 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc---------ccc
Confidence 5889999998764432211 1111 22344556777 3333344458999887433322 22221111 222
Q ss_pred EEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECCEEc
Q psy670 314 FIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEGKEL 352 (540)
Q Consensus 314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~ 352 (540)
....|......+++ ...|.+..-|. ..+.|+-++...
T Consensus 79 Vy~~P~vsv~F~~g--~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 79 VYPKPRVSVRFEDG--YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred eecCCEEEEEecCC--EEEEEcceeeCCCeEEEEEECCccC
Confidence 33333222222222 23488877663 578999887764
No 388
>PHA02982 hypothetical protein; Provisional
Probab=95.12 E-value=0.48 Score=39.91 Aligned_cols=122 Identities=14% Similarity=0.227 Sum_probs=69.2
Q ss_pred eeecCCCCeEEEEEEeccc-CCCeEEEEeCCEEeeccC-----------------ceEEEEecCCCeEEEEEEEeCCCCC
Q psy670 216 IIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESS-----------------KIKIIVNEQDDTYEIICEITDPIGP 277 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~l~i~~~~~~ 277 (540)
++....++++.|.|..... .-.+..|+.++....... +.....+ -....++|+|.++..+
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s--v~g~~STLTIkk~~i~ 110 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALS--VSGNSSTFTMKKPDPQ 110 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEE--EeccceeEEeccCCcc
Confidence 3445569999999997542 334688988553322200 0001110 1122358999999999
Q ss_pred CcEEEEEEEEcCCCCee-eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE
Q psy670 278 DSGTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351 (540)
Q Consensus 278 d~g~y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~ 351 (540)
..|-|+|.+....+... ...-+.|+.. ...+. ...-...-.+.|.+-..-.+-..|.-+|-.
T Consensus 111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~------~V~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 111 NLGCFTCEAKDAEGKEETCEKCLEIQKE------DILYV------VEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred cCCceEEEEecCCCchheeheeeeEecc------eEEEE------EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999998665433 2445555321 00110 111233456789886544333488877653
No 389
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.00 E-value=3.2 Score=38.96 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=90.4
Q ss_pred eeecCCCCeEEEEEEec--ccC-CCeEEEEeCCEEeec-----------------cCceEEEEe--cCCCeEEEEEEEeC
Q psy670 216 IIPNESGTLIQMKCKCS--AKP-RPEVKWFKADKLVKE-----------------SSKIKIIVN--EQDDTYEIICEITD 273 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~--~~p-~~~v~W~~~~~~l~~-----------------~~~~~~~~~--~~~~~~~~~l~i~~ 273 (540)
...+..|..+.|.|..+ |+. -....|+..|-++.+ ...+.+... -..+...++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 34556699999999985 332 345889876544321 111111111 02334456999999
Q ss_pred CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeC-CCeEEEEEEEEcc--CCCeEEEEECCE
Q psy670 274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG-GKLVVMECKVKAK--PMPEIVWFHEGK 350 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~-g~~v~l~C~~~~~--p~~~i~W~~~~~ 350 (540)
+.....|-|.|.+...........-+.|... ..+ ....+ ...-.+.|-+-.. .+++|.|.-+|-
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-------V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV 419 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADH-------VFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGV 419 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccE-------EEE------EEEeccCceEEEEEEEEecccCCceeEEEEccE
Confidence 9999999999999887555555545555331 111 11223 2335567887554 355799998876
Q ss_pred EccCCCceEEE---EEecCCeeEEEEEEcCCCCCC-CeeEEEEEEcC
Q psy670 351 ELQQTDRISWN---VTLKGDKYHIRLEVKDPRKED-TGLYKCNIKNF 393 (540)
Q Consensus 351 ~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~ 393 (540)
.........+. -..-.+...+.+.|.+-...| --.-.|+.--.
T Consensus 420 ~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg 466 (500)
T PHA02914 420 SFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITG 466 (500)
T ss_pred EecCeecCcccccccccccccceEEEEEecccCccccccceEEEecC
Confidence 54321110000 000111223366666655445 34456765443
No 390
>KOG1480|consensus
Probab=94.97 E-value=0.012 Score=59.00 Aligned_cols=77 Identities=12% Similarity=0.254 Sum_probs=53.6
Q ss_pred cCCcEEEecCCCeEEEEEEEe-eecCCceEEEecCeecCCCCeE---------EEEEEecCCeEEEEEEeeeeeeeeCCe
Q psy670 459 EVPKVVTISKKKTVVIECKVM-SMYEPSVTWMKEKNTVKEDNKH---------VVHIEQVKDVSMNFELWLGIVEKRGPS 528 (540)
Q Consensus 459 ~~~~~~~~~~g~~~~l~C~v~-g~p~~~v~W~~~~~~l~~~~~~---------~~~~~~~~~g~y~c~~~~~~~~~~~~~ 528 (540)
..+.-..|..+..+.+.|... +.|...+.|+|++..+.++.+. ...+..++.|.|+|++...--.+.-..
T Consensus 134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~ 213 (909)
T KOG1480|consen 134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDP 213 (909)
T ss_pred cChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccc
Confidence 334445666777888888754 7788899999999888765332 224555789999999996555555556
Q ss_pred eEEEEEe
Q psy670 529 IKIIYYI 535 (540)
Q Consensus 529 ~~~~~~~ 535 (540)
....+|+
T Consensus 214 ~~v~vyv 220 (909)
T KOG1480|consen 214 ATVQVYV 220 (909)
T ss_pred eEEEEEE
Confidence 6666555
No 391
>KOG4597|consensus
Probab=94.81 E-value=0.055 Score=51.24 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=66.1
Q ss_pred CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEE---CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH---EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
+.+...|....+..+++..++|-+.|.+.+.|+|.+ ++..+........ ..---..+..|.|-+....|+|.|+|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~--e~p~vtstcql~ic~ewq~~a~w~tC 274 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV--ENPVVTSTCQLVICNEWQADAGWYTC 274 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc--CCcceeeeeeEEEcchhhcCCCceee
Confidence 445555666778889999999999999999999975 2222211111000 00111224479999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~ 407 (540)
.+.+..|...+.+.+.+..
T Consensus 275 s~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 275 SARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred ccccccceeeccceeeeec
Confidence 9999999988888776653
No 392
>PHA03042 CD47-like protein; Provisional
Probab=94.63 E-value=0.18 Score=44.38 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=48.1
Q ss_pred eCCCeEEEEEEEEcc-----CCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 324 QGGKLVVMECKVKAK-----PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
.-.+++.+.|.++.- ..-.+.|..++..+-..+. . ..++|.+.... .-.|+|+|+|.+......
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~---------t-n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN---------T-NTSSLKFNFSK-NLSGNYTCEAINKFNKIK 97 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC---------C-cceEEEEeccc-cCCCceeEEEeecccCcc
Confidence 357889999998752 2346899999987754332 1 22367776533 347999999988765555
Q ss_pred EEEEEEEE
Q psy670 399 ANLTLNIE 406 (540)
Q Consensus 399 ~~~~l~V~ 406 (540)
..+.|+-.
T Consensus 98 ~~IeLk~~ 105 (286)
T PHA03042 98 NTIELQYV 105 (286)
T ss_pred EEEEEEEE
Confidence 55555544
No 393
>PHA03042 CD47-like protein; Provisional
Probab=94.47 E-value=0.17 Score=44.55 Aligned_cols=70 Identities=27% Similarity=0.422 Sum_probs=44.5
Q ss_pred CCeEEEEEEEeec-----CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEE
Q psy670 117 GDLLVMECVLEAS-----PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA 191 (540)
Q Consensus 117 G~~v~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (540)
++++.+.|.+... ..-.+.|..+|+.+-..+... .++|.+... .+-.|+|+|+|.+...+...
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----------~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----------TSSLKFNFS-KNLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----------ceEEEEecc-ccCCCceeEEEeecccCccE
Confidence 5789999999432 233699999988763322211 136666543 44589999999876555455
Q ss_pred EEEEEEe
Q psy670 192 NIALNFQ 198 (540)
Q Consensus 192 ~~~l~v~ 198 (540)
.+.++..
T Consensus 99 ~IeLk~~ 105 (286)
T PHA03042 99 TIELQYV 105 (286)
T ss_pred EEEEEEE
Confidence 5555433
No 394
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.34 E-value=0.068 Score=46.83 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=35.6
Q ss_pred ecceeeeeecC-eecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEcc
Q psy670 22 ANFQMNMYHKG-SLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNK 78 (540)
Q Consensus 22 ~~~~~~W~k~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~ 78 (540)
..|.++|.-++ ..+......+++ .. +.|++.+.+.+++|.|+|.+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT--~T-------G~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNIT--ET-------GKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEc--cC-------ceEEeeccccccCCceEEEEEEE
Confidence 45889998765 455544444443 33 48999999999999999988654
No 395
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.33 E-value=0.068 Score=46.82 Aligned_cols=49 Identities=16% Similarity=0.366 Sum_probs=37.2
Q ss_pred CCCceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 130 PMPDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 130 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
..|.+.|... |..+.......+...+ .|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG--------~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG--------KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc--------eEEeeccccccCCceEEEEEEEe
Confidence 4678999985 5566655565554322 79999999999999999987644
No 396
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.64 E-value=0.79 Score=32.78 Aligned_cols=52 Identities=21% Similarity=0.391 Sum_probs=32.7
Q ss_pred CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE-EcCCeeeEEEEEEEE
Q psy670 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI-KNFHGELNANLTLNI 405 (540)
Q Consensus 340 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V 405 (540)
.+.+.|...+........ .+.+.....+|+|.++|.| .+..-.....+.|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~--------------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK--------------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEESS--------------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccce--------------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 446777765554433222 3455566778999999999 665555555555554
No 397
>PHA03283 envelope glycoprotein E; Provisional
Probab=93.39 E-value=5.1 Score=39.29 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=52.2
Q ss_pred EEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCC-CCCCCCC-----------CCccccCCCeEEEE
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGG-KAPRFPK-----------KPTIHQDGDLLVME 123 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~-~~~~~~~-----------~~~~v~~G~~v~l~ 123 (540)
+.|.|.+++.+++|.|+-..++..+.....+.|+|..+...+.-+.. ..+..+. ......+|+++.+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 58999999999999999999987775556666777653322221100 0111111 12245689999997
Q ss_pred EEEeecC--C---CceEEEe
Q psy670 124 CVLEASP--M---PDIIWYQ 138 (540)
Q Consensus 124 C~~~~~p--~---~~v~W~~ 138 (540)
-...... . ..|.|++
T Consensus 214 i~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 214 VHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEEeeccCCCCceEEEEEEE
Confidence 7764432 2 2689976
No 398
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=93.32 E-value=0.42 Score=34.80 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=46.1
Q ss_pred eEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670 119 LLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196 (540)
Q Consensus 119 ~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 196 (540)
.+.-+|.+ .|.|++.|.|.-+ +.............+.....+.+.+-.....|+-..+|.+.+....-...+.|+
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 35668986 7889999999742 111111122222223444556777777888899999999988644444444443
No 399
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.86 E-value=0.59 Score=43.33 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=38.2
Q ss_pred eEEEEEEEEccCCC--eEEEEEC---------C---EEccCCC-------ceEEEEEecC--CeeEEEEEEcCCCCCCCe
Q psy670 328 LVVMECKVKAKPMP--EIVWFHE---------G---KELQQTD-------RISWNVTLKG--DKYHIRLEVKDPRKEDTG 384 (540)
Q Consensus 328 ~v~l~C~~~~~p~~--~i~W~~~---------~---~~~~~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~d~G 384 (540)
.++|+|.|.|+-+. .+.|.++ | ..+..+. .+......++ +.+..+..+ .+...+..
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v-~v~~~~~~ 294 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSV-RVPTDMSN 294 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEE-EeCCCCCC
Confidence 57999999996443 6799999 4 2222211 0111122222 345544444 34556777
Q ss_pred eEEEEEEcCC
Q psy670 385 LYKCNIKNFH 394 (540)
Q Consensus 385 ~Y~C~a~n~~ 394 (540)
.|+|.+.+..
T Consensus 295 ~Y~C~V~Hsg 304 (338)
T PHA02865 295 QIVCVVFHST 304 (338)
T ss_pred CcEEEEEeCC
Confidence 8999998865
No 400
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=92.67 E-value=0.47 Score=34.56 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=45.1
Q ss_pred cceee-eCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 8 KSYTL-EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 8 ~~c~~-~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
..|.+ +|.|+ +.|+|. ..|......+.....++ .....+.+.+-..+..|.-.-+|.+..........+
T Consensus 25 A~CiSa~GrPp------a~ItW~---t~l~G~~etq~~~~~~G-T~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~ 94 (98)
T cd05890 25 ATCVSANGKPP------SVVRWD---TRLKGEAEFQEIRNQNG-TVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSV 94 (98)
T ss_pred EEEEcCCCcCC------cEeEEE---ccCCCceeeeeeCCCCC-CEEEEEEEEEeECHHHcCCEeEEEEEeccccccccE
Confidence 45984 49998 999998 33322222222222233 444567888889999999999999987644333344
Q ss_pred EE
Q psy670 87 NL 88 (540)
Q Consensus 87 ~l 88 (540)
.|
T Consensus 95 ~L 96 (98)
T cd05890 95 TL 96 (98)
T ss_pred Ee
Confidence 33
No 401
>KOG4597|consensus
Probab=92.57 E-value=0.17 Score=48.05 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=62.1
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEe---CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQ---GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
..+..|++..++|-+.|.+.+.|.|.+ ++..+.... -.... .-.-+.+..|.|-+....|+|.|+|.+.+..|.
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~-nq~~e--~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRP-NQTVE--NPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecC-ccccC--CcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 357889999999999999999999976 332221111 11111 112233558999999999999999999999998
Q ss_pred eEEEEEEEEec
Q psy670 189 SNANIALNFQG 199 (540)
Q Consensus 189 ~~~~~~l~v~~ 199 (540)
....+.+.+..
T Consensus 283 ~~rdv~c~s~~ 293 (560)
T KOG4597|consen 283 LRRDVPCSSVK 293 (560)
T ss_pred eeccceeeeec
Confidence 88888877654
No 402
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=92.37 E-value=0.8 Score=33.71 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=41.4
Q ss_pred eceeecCCcEEEec--CC--CeEEEEEEEeeecCCceEEEecCeec-CCCCeEEEEEEecCCeEEEEEE
Q psy670 454 VPVIREVPKVVTIS--KK--KTVVIECKVMSMYEPSVTWMKEKNTV-KEDNKHVVHIEQVKDVSMNFEL 517 (540)
Q Consensus 454 ~p~i~~~~~~~~~~--~g--~~~~l~C~v~g~p~~~v~W~~~~~~l-~~~~~~~~~~~~~~~g~y~c~~ 517 (540)
++.|..++....+. .+ +...|.+.+.+. ...+.||.||+.+ .....+.+.......|.|+.++
T Consensus 10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEE
Confidence 56666655443332 22 256666666665 4599999999999 3334455666767899998776
No 403
>PHA03282 envelope glycoprotein E; Provisional
Probab=90.92 E-value=6.1 Score=38.09 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCC
Q psy670 164 RLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
.|++.|+..+++|.|.|++....
T Consensus 334 dL~F~nAp~saSGLYVfVl~yNG 356 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVNG 356 (540)
T ss_pred ceEecCCCcccCceEEEEEEECC
Confidence 79999999999999999987543
No 404
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.92 E-value=0.92 Score=33.91 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEE
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGES-NANIALNF 197 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 197 (540)
.|.|+.++..|+|.|..++.+..|.. ...+.|.|
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 89999999999999999999988875 45555554
No 405
>PHA03283 envelope glycoprotein E; Provisional
Probab=90.82 E-value=8.7 Score=37.76 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecC
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG 200 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~ 200 (540)
.|+|.+++.+++|.|+-..+++.+.....+.|.|...
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~ 171 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKP 171 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCC
Confidence 7999999999999999999987775566667777763
No 406
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.47 E-value=3 Score=29.84 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=23.1
Q ss_pred EEEEcCCCCCCCeEEEEEE-EcCCceeEEEEEEEE
Q psy670 164 RLEINNPTKDDGGNYRCNA-CNSIGESNANIALNF 197 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~v 197 (540)
.+........|+|.+.|.| .+..-.....+.|.|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4566677889999999999 444444444555444
No 407
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.31 E-value=1.5 Score=32.77 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=25.6
Q ss_pred EEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 372 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+|.|+.++..|+|.|.-++++..|.. ....+.|
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqV 104 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQV 104 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcE-EEEEEEE
Confidence 89999999999999999999998876 3344444
No 408
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=90.27 E-value=0.95 Score=41.99 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=36.8
Q ss_pred eEEEEEEecc-cCC-CeEEEEeC---------C---EEeeccCce---------EEEEecCC-CeEEEEEEEeCCCCCCc
Q psy670 224 LIQMKCKCSA-KPR-PEVKWFKA---------D---KLVKESSKI---------KIIVNEQD-DTYEIICEITDPIGPDS 279 (540)
Q Consensus 224 ~~~l~C~~~~-~p~-~~v~W~~~---------~---~~l~~~~~~---------~~~~~~~~-~~~~~~l~i~~~~~~d~ 279 (540)
.++|+|.|.| +|. ..+.|.++ | ..+..+... .+.. +.+ +++.....+ .+...+.
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~p-n~DggTfQ~~~~v-~v~~~~~ 293 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKK-DNDKNTFSSTPSV-RVPTDMS 293 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceee-CCCCCeeEEEEEE-EeCCCCC
Confidence 5799999999 454 36899999 3 111111100 0111 123 355554444 3445566
Q ss_pred EEEEEEEEcC
Q psy670 280 GTYRCNVKNE 289 (540)
Q Consensus 280 g~y~C~~~~~ 289 (540)
..|+|++.+.
T Consensus 294 ~~Y~C~V~Hs 303 (338)
T PHA02865 294 NQIVCVVFHS 303 (338)
T ss_pred CCcEEEEEeC
Confidence 6799998875
No 409
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=87.05 E-value=41 Score=34.96 Aligned_cols=232 Identities=13% Similarity=0.115 Sum_probs=123.9
Q ss_pred cCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC--C----
Q psy670 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG--E---- 292 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~---- 292 (540)
...|+.+.|...+.|.....+...-.|..+... +......+... +..+|.|.-.+.-... .
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~----------~Y~~~n~~~w~---P~~~G~Y~I~v~VKDk~S~~eyD 368 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDS----------GYIRNNIYTWK---PKIAGKYSITLWVKDISSKGEYE 368 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeec----------cccccceEEEe---eCCCceEEEEEEEEcCcCccccc
Confidence 346999999999988555554443344443211 11111123332 3368888776653221 1
Q ss_pred eeeeEEEEEeeccCCCCCCCeEE--eCCceEEeeCCCeEEEEEEEEccCCCeEE-E-EECCEEccCCCceEEEEEecCCe
Q psy670 293 SNANLNLNIEAEAEPEGDPPTFI--EKPKIRSEQGGKLVVMECKVKAKPMPEIV-W-FHEGKELQQTDRISWNVTLKGDK 368 (540)
Q Consensus 293 ~~~~~~l~v~~~~~~~~~~p~~~--~~~~~~~~~~g~~v~l~C~~~~~p~~~i~-W-~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
....+.+.+...+.. |..+. ..+.......|+.+.+.|.+.+.-...+. | .++|..+....-. ...
T Consensus 369 ~~~~v~f~i~~~~~~---p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~------~~~- 438 (667)
T PRK14081 369 DKSSIDYTIEEKSKE---PIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYG------KNN- 438 (667)
T ss_pred ceEEEEEEEcccCCC---CeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecc------ccc-
Confidence 233344554432211 11221 12223446679999999999876554443 3 3466655432110 011
Q ss_pred eEEEEEEcCCCCCCCeeEEEEEE--cCCee----eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcc
Q psy670 369 YHIRLEVKDPRKEDTGLYKCNIK--NFHGE----LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQ 442 (540)
Q Consensus 369 ~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (540)
.+.+ .+..+|.|+-.+. +.... ....+.+.|..
T Consensus 439 ---~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e----------------------------------- 477 (667)
T PRK14081 439 ---WVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE----------------------------------- 477 (667)
T ss_pred ---EEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEec-----------------------------------
Confidence 3333 3467899997654 33221 23455555543
Q ss_pred cccceeeeeeeece-ee--cCCcEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCC---eEEEEEEecCCeEEE
Q psy670 443 FKKYSVLTLSVVPV-IR--EVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDN---KHVVHIEQVKDVSMN 514 (540)
Q Consensus 443 ~~~~~~~~~~~~p~-i~--~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~---~~~~~~~~~~~g~y~ 514 (540)
..|. +. ..+.......|+.+++.|.++|.-.. .+.-+.||.-+...+ .......+.-.|.|+
T Consensus 478 ----------~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Ys~~~~ysf~P~~~GkY~ 547 (667)
T PRK14081 478 ----------YIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETDYIKNKKYKFIPKCSGKYT 547 (667)
T ss_pred ----------cCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEeeccccceEEEeecCCceEE
Confidence 1333 22 12323346679999999999986555 344455676553321 223355678899999
Q ss_pred EEEeeeeeee
Q psy670 515 FELWLGIVEK 524 (540)
Q Consensus 515 c~~~~~~~~~ 524 (540)
..+...+...
T Consensus 548 I~V~aKn~~s 557 (667)
T PRK14081 548 IEVLAKNIKS 557 (667)
T ss_pred EEEEEccccc
Confidence 9888766543
No 410
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=86.84 E-value=1.8 Score=42.58 Aligned_cols=83 Identities=25% Similarity=0.444 Sum_probs=12.3
Q ss_pred EEEEEcccccCCCeeEEEEEEccCcce-eeeEEEEEeecCCccccCCCCCCCCCC-----------CCccccCCCeEEEE
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPK-----------KPTIHQDGDLLVME 123 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~v~~G~~v~l~ 123 (540)
+.|.|.+++.+|+|.|+-...+..+.. ...+.|.|......+..+....+..+. ......+|+++.|.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 479999999999999999998766544 344556665533221111110011111 11235689999988
Q ss_pred EEEee--cC-CC---ceEEEe
Q psy670 124 CVLEA--SP-MP---DIIWYQ 138 (540)
Q Consensus 124 C~~~~--~p-~~---~v~W~~ 138 (540)
-.+.. .. .+ .|.|++
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEE
Confidence 87733 23 22 699986
No 411
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=86.09 E-value=3.8 Score=30.07 Aligned_cols=66 Identities=14% Similarity=0.281 Sum_probs=41.4
Q ss_pred CccccCCCeEEEEEEEeec-----CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEAS-----PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
..++..|+.++..|.+... ....+.|..++..++......+. ...+++++.+.....+-.|-|...
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in-------~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN-------DTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES-------TTEEEEEESS--SSEEEEEEEEEC
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC-------CeEEEEEEccCCCCCceEEEEEEc
Confidence 3467899999999999422 34479999998866554332222 112578888877766667777643
No 412
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=84.38 E-value=7.6 Score=28.46 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=38.8
Q ss_pred ecCCCCeEEEEEEecc-----cCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 218 PNESGTLIQMKCKCSA-----KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 218 ~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
.+..|+.++..|.... ..+..+.|..++..++......+ .... +.+++.+........|-|...
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i----n~~~--SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI----NDTV--SSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE----STTE--EEEEESS--SSEEEEEEEEEC
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee----CCeE--EEEEEccCCCCCceEEEEEEc
Confidence 4567999999999953 24557999999986665543322 1121 467777766666566666543
No 413
>PHA03281 envelope glycoprotein E; Provisional
Probab=83.35 E-value=39 Score=33.54 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=49.7
Q ss_pred EEEEEcccccCCCeeEEEEEEccCccee-eeEEEEEeecCCccccCCCCCCCCCC-----------CCccccCCCeEEEE
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGS-STVNLNFSEEDGKLKVPGGKAPRFPK-----------KPTIHQDGDLLVME 123 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~v~~G~~v~l~ 123 (540)
+.|+|.+++.+++|.|+-..+...|... +.+.|+|...+ ...++. ++..+. ......+|+++.+.
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~-~~rip~--p~Vtpk~hga~F~vknYhShVF~pGDTFsl~ 374 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE-ENHIDL--PAVTPKPKGAEFHMWHYHSHVFSVGDTFSLA 374 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc-ccCCCC--CCccccccCceEEEeccceeEecCCCeeEEE
Confidence 5899999999999999998886656443 35556665433 111111 111111 12245689999888
Q ss_pred EEEeec--CCC---ceEEEe
Q psy670 124 CVLEAS--PMP---DIIWYQ 138 (540)
Q Consensus 124 C~~~~~--p~~---~v~W~~ 138 (540)
-..... ..+ .+.|++
T Consensus 375 v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 375 MHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEEeeeccCCCceeEEEEEE
Confidence 887433 222 699976
No 414
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=82.72 E-value=2.5 Score=29.20 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=37.8
Q ss_pred EecCCCeEEEEEEEeeecCCceEEEecC-eecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670 465 TISKKKTVVIECKVMSMYEPSVTWMKEK-NTVKEDNKHVVHIEQVKDVSMNFELWLGIV 522 (540)
Q Consensus 465 ~~~~g~~~~l~C~v~g~p~~~v~W~~~~-~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~ 522 (540)
.+..|+.++|...........+.|..++ .....+. .+.......|.|..+|++.+-
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~--~~t~ty~~~G~y~V~ltv~n~ 63 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGS--SVTHTYSSPGTYTVTLTVTNG 63 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSS--EEEEEESSSEEEEEEEEEEET
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCC--CEEEEcCCCeEEEEEEEEEEC
Confidence 3557888999987733334489999988 3333333 345566789999999987653
No 415
>PHA03052 Hypothetical protein; Provisional
Probab=82.59 E-value=3.2 Score=27.97 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=27.4
Q ss_pred cEEEecCCCeEEEEEEEee-ec--CCceEEEecCeecC
Q psy670 462 KVVTISKKKTVVIECKVMS-MY--EPSVTWMKEKNTVK 496 (540)
Q Consensus 462 ~~~~~~~g~~~~l~C~v~g-~p--~~~v~W~~~~~~l~ 496 (540)
....+..|..++|.|.|.- .+ .+.|.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4567778999999999983 22 34788999999883
No 416
>PHA03189 UL14 tegument protein; Provisional
Probab=82.48 E-value=17 Score=33.07 Aligned_cols=80 Identities=11% Similarity=0.213 Sum_probs=41.4
Q ss_pred CceeecCCCCeEEEEEEeccc--CCCeEE-----EEe----------CCEEeeccCceE-----EEEecCCCeEEEEEEE
Q psy670 214 PRIIPNESGTLIQMKCKCSAK--PRPEVK-----WFK----------ADKLVKESSKIK-----IIVNEQDDTYEIICEI 271 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~-----W~~----------~~~~l~~~~~~~-----~~~~~~~~~~~~~l~i 271 (540)
+....+..|+.+++.|.+... |...|. |.- +|+.+.+.-... ....+.+.....+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 334456689999999999653 333222 211 122222211111 1111122222334444
Q ss_pred eCCCCCCcEEEEEEEEcCCCCee
Q psy670 272 TDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
++..+-+|.|.|+..|......
T Consensus 139 -~v~t~taG~Y~CvLrN~tHglv 160 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHGLV 160 (348)
T ss_pred -EEEecccceEEEEeccccceee
Confidence 4556789999999999755443
No 417
>PHA03052 Hypothetical protein; Provisional
Probab=80.80 E-value=4.9 Score=27.14 Aligned_cols=36 Identities=17% Similarity=0.387 Sum_probs=27.4
Q ss_pred ceEEeeCCCeEEEEEEEEcc---CCCeEEEEECCEEccC
Q psy670 319 KIRSEQGGKLVVMECKVKAK---PMPEIVWFHEGKELQQ 354 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~~~~~~~ 354 (540)
....+..|..++|.|.+.-. ..+.+.|.-|+..+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 45667889999999999732 2456899989888744
No 418
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=78.34 E-value=91 Score=32.57 Aligned_cols=312 Identities=12% Similarity=0.090 Sum_probs=160.6
Q ss_pred ccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc------
Q psy670 114 HQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG------ 187 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------ 187 (540)
...|+.+.|.+.+.|.....+...-.|.......-. .. ..+.. .+..+|.|.-.+.-...
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~--------~~---n~~~w---~P~~~G~Y~I~v~VKDk~S~~ey 367 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYI--------RN---NIYTW---KPKIAGKYSITLWVKDISSKGEY 367 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeecccc--------cc---ceEEE---eeCCCceEEEEEEEEcCcCcccc
Confidence 357899999999987655555443344433221110 00 02222 24468999887753221
Q ss_pred eeEEEEEEEEecCcCCCCCCCe-e--ccCCceeecCCCCeEEEEEEecccCCCeEE-E-EeCCEEeeccCceEEEEecCC
Q psy670 188 ESNANIALNFQGGENGAGFAPS-F--IEKPRIIPNESGTLIQMKCKCSAKPRPEVK-W-FKADKLVKESSKIKIIVNEQD 262 (540)
Q Consensus 188 ~~~~~~~l~v~~~~~~~~~~p~-~--~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W-~~~~~~l~~~~~~~~~~~~~~ 262 (540)
.+...+.+.+..... .|. + +..+.......|+.+.+.|.+.+.....+. | .++|..+.... + .
T Consensus 368 D~~~~v~f~i~~~~~----~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~-Y-------~ 435 (667)
T PRK14081 368 EDKSSIDYTIEEKSK----EPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKID-Y-------G 435 (667)
T ss_pred cceEEEEEEEcccCC----CCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEee-c-------c
Confidence 124445555554211 221 1 111222344569999999999875444433 3 34666554211 0 0
Q ss_pred CeEEEEEEEeCCCCCCcEEEEEEEEcCC--CC----eeeeEEEEEeeccCCCCCCCe---EEeCCceEEeeCCCeEEEEE
Q psy670 263 DTYEIICEITDPIGPDSGTYRCNVKNEF--GE----SNANLNLNIEAEAEPEGDPPT---FIEKPKIRSEQGGKLVVMEC 333 (540)
Q Consensus 263 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~--~~----~~~~~~l~v~~~~~~~~~~p~---~~~~~~~~~~~~g~~v~l~C 333 (540)
....+.+. +.-+|.|+-.+.-.. .. ....+.+.|... .|. .+..+.......|+.++++|
T Consensus 436 --~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~------~P~~i~~il~~~~~~~~vg~~i~~~~ 504 (667)
T PRK14081 436 --KNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEY------IPAEIDYILLPVKEYYLVGDDIEIEV 504 (667)
T ss_pred --cccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEecc------CceeeeeEEecccccEEeCCEEEEEE
Confidence 00123332 357899988665422 21 234455666542 222 12233334467899999999
Q ss_pred EEEccCCCeE--EEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe--e----eEEEEEEEE
Q psy670 334 KVKAKPMPEI--VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG--E----LNANLTLNI 405 (540)
Q Consensus 334 ~~~~~p~~~i--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~----~~~~~~l~V 405 (540)
.+.+.-...+ .-+.+|..+....- .... .+.+. +..+|.|+-.+.-... . ..+.+.+.|
T Consensus 505 ~~~~~k~v~y~y~~~~NG~~v~~t~Y------s~~~----~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V 571 (667)
T PRK14081 505 IIQNTKDVLIKYILKINGHKVEETDY------IKNK----KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYV 571 (667)
T ss_pred EEeCCCeEEEEEEEEECCEEEEEeec------cccc----eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEE
Confidence 9988554433 33445655422111 0111 23332 4568999976643322 1 244556666
Q ss_pred EEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceee---cCCcEEEecCCCeEEEEEEEeeec
Q psy670 406 EMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIR---EVPKVVTISKKKTVVIECKVMSMY 482 (540)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~---~~~~~~~~~~g~~~~l~C~v~g~p 482 (540)
.. +..|. ..........|+.++++-.+.|.-
T Consensus 572 ~e----------------------------------------------~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~ 605 (667)
T PRK14081 572 RE----------------------------------------------ALPITNTKIKTSKKKFKCNEEVTFSVKSEGGK 605 (667)
T ss_pred cC----------------------------------------------CCCceeeEEEeecceEEcCCeEEEEEEccCCC
Confidence 55 21121 112344566788899988888766
Q ss_pred CCceEEEe--cCe--ecCC-CCeEEEEEEecCCeEEEEEEeeee
Q psy670 483 EPSVTWMK--EKN--TVKE-DNKHVVHIEQVKDVSMNFELWLGI 521 (540)
Q Consensus 483 ~~~v~W~~--~~~--~l~~-~~~~~~~~~~~~~g~y~c~~~~~~ 521 (540)
..-++.+- +|. .++. +.....+..+...|.|...+...+
T Consensus 606 ~v~Yef~v~~~g~w~~vq~ys~k~~ysf~p~~~g~Y~ilvl~ks 649 (667)
T PRK14081 606 DVCYEFYIMEKGEWKLVQKYSRKNYYSFMPFNKGKYKVLVLCKS 649 (667)
T ss_pred cEEEEEEEEECCcEEEEeeccccCceEEEeccCCcEEEEEEEec
Confidence 66555432 222 1111 112233567778999997665443
No 419
>KOG1026|consensus
Probab=76.65 E-value=4 Score=42.54 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=91.7
Q ss_pred eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 295 (540)
...+..|..+++.|...+.|.+...|+.++............-. . ....+. .+.|.+.+..+....
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-----~-~~~~~~--------~~~c~~E~~~~~~~~ 266 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-----S-ECEVLE--------NDLCIAENAVARSNP 266 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-----c-cceeee--------chhhHHHHhhhhcCc
Confidence 34566789999999999999999999988766544322111000 0 011111 189999998887766
Q ss_pred eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE---ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEE
Q psy670 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK---AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372 (540)
Q Consensus 296 ~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~---~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
.+.+.+... +........ .++ .-.|... +.|.+...|..++..+.............. . -
T Consensus 267 ~v~~~~~~p-------~~~~~~~~~----~~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~-~---C 329 (774)
T KOG1026|consen 267 SILLVVDLP-------KAEVLLCSP----LSD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKE-Q---C 329 (774)
T ss_pred eeeeEEecc-------cccccCCCC----ccc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCc-C---C
Confidence 666655442 111110000 000 2224433 456667788887765433222111111100 0 2
Q ss_pred EEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEE
Q psy670 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409 (540)
Q Consensus 373 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 409 (540)
+......-.+.|.|+|.+.+..|.........+..-|
T Consensus 330 ~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 330 LPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cccCcCcccccCcceeeecccCccccccCcCccccCC
Confidence 3334445667899999999998887766666666533
No 420
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=75.98 E-value=29 Score=25.55 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=45.8
Q ss_pred CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
.|....+..|+++.+.|...-..+..+.|.-.=. ...... +..+. .+.+.+++. ...-.|.+.=....
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~--------k~~~~~-g~~W~-~f~LsnV~~--ds~~~C~~~C~g~Q 76 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS--------KTELDS-GPQWK-AFQLSNVTE--DSSPLCFFNCSGEQ 76 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE--------EEEEEE-ETTEE-EEEEEEE-S--CEEEEEEEEETTEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEEEecC--------CcccCC-CCcEE-EEEEEcccc--CCeEEEEEEcCCeE
Confidence 3556778899999999998643333455532100 001111 11121 566677775 36777988765556
Q ss_pred eEEEEEEEEEE
Q psy670 397 LNANLTLNIEM 407 (540)
Q Consensus 397 ~~~~~~l~V~~ 407 (540)
..+++.|+|..
T Consensus 77 ~~~~~~ItVY~ 87 (91)
T PF03921_consen 77 SSASANITVYK 87 (91)
T ss_dssp EEEEEEEEEEB
T ss_pred EEeEEeeEEeC
Confidence 67777787765
No 421
>PHA03189 UL14 tegument protein; Provisional
Probab=73.60 E-value=54 Score=29.98 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=42.1
Q ss_pred eEEeeCCCeEEEEEEEEcc--CCCeE-----EEEE----------CCEEccCCCc-----eEEEEEecCCeeEEEEEEcC
Q psy670 320 IRSEQGGKLVVMECKVKAK--PMPEI-----VWFH----------EGKELQQTDR-----ISWNVTLKGDKYHIRLEVKD 377 (540)
Q Consensus 320 ~~~~~~g~~v~l~C~~~~~--p~~~i-----~W~~----------~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~ 377 (540)
...+..|+.+++.|.+... |...| .|.. .|..+.++.. .++++...+.....+|++.-
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~v 140 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFRV 140 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEEE
Confidence 3456689999999998643 44333 2321 2222222211 22333444444445666654
Q ss_pred CCCCCCeeEEEEEEcCC
Q psy670 378 PRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 378 ~~~~d~G~Y~C~a~n~~ 394 (540)
..+-+|.|.|...|..
T Consensus 141 -~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 141 -STSTAGMYECVLRNET 156 (348)
T ss_pred -EecccceEEEEecccc
Confidence 4456899999999964
No 422
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=70.06 E-value=18 Score=25.67 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=36.9
Q ss_pred CCeEEEEEEEeee-cCCceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeee
Q psy670 469 KKTVVIECKVMSM-YEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVE 523 (540)
Q Consensus 469 g~~~~l~C~v~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~ 523 (540)
|+.+.|....... ....+.|.+++..................|.|+.++...+-.
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgdg~~~~~~~~~~~~~y~~~G~y~v~l~v~d~~ 69 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGDGEVSSSGEPTVTHTYTKPGTYTVTLTVTNAV 69 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCCCCccccCCCceEEEcCCCcEEEEEEEEEeCC
Confidence 7888888877644 345889998775222222134455667899999999887653
No 423
>KOG1026|consensus
Probab=69.01 E-value=11 Score=39.45 Aligned_cols=153 Identities=16% Similarity=0.238 Sum_probs=84.4
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (540)
.+..|..+++.|...+.|.+...|+.++.............. .-...+. ++.|.+++..+.....
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-------~~~~~~~--------~~~c~~E~~~~~~~~~ 267 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-------SECEVLE--------NDLCIAENAVARSNPS 267 (774)
T ss_pred hhcccchheeeeecccCCCcceeeecccccccCCCccccccc-------ccceeee--------chhhHHHHhhhhcCce
Confidence 356789999999999999999999987665544322111100 0011111 1899999988887666
Q ss_pred EEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe---cccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 193 IALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC---SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 193 ~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
+.+.+.. ++......... ++ .-.|.. .+.|.+...|..++..+.............. --+
T Consensus 268 v~~~~~~-------p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~----~C~ 330 (774)
T KOG1026|consen 268 ILLVVDL-------PKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKE----QCL 330 (774)
T ss_pred eeeEEec-------ccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCc----CCc
Confidence 6666653 21111111111 00 122333 3466677888887766543332222111110 012
Q ss_pred EEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670 270 EITDPIGPDSGTYRCNVKNEFGESNANL 297 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 297 (540)
......-.+.|.|+|.+.+..|......
T Consensus 331 ~~~~~~h~~~~~~~~~~e~~~g~~~~r~ 358 (774)
T KOG1026|consen 331 PWNDPPHSHNGNYTLFPELPGGKNYCRN 358 (774)
T ss_pred ccCcCcccccCcceeeecccCccccccC
Confidence 2223345678999999998877654433
No 424
>PHA03112 IL-18 binding protein; Provisional
Probab=68.68 E-value=21 Score=28.54 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=40.5
Q ss_pred cCCCCeEEEEEEecc-cCC-CeEEEEeCC-EEeeccCce---------EEEEecCCCeEEEEEEEeCCCCC-CcEEEEEE
Q psy670 219 NESGTLIQMKCKCSA-KPR-PEVKWFKAD-KLVKESSKI---------KIIVNEQDDTYEIICEITDPIGP-DSGTYRCN 285 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~-~p~-~~v~W~~~~-~~l~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~ 285 (540)
..+++.+.|+|.+-+ +|. .-+.|..++ +...+.... ..............|.+.+++.. +...++|+
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 346899999999986 465 458999765 222111000 00011112233345666666654 33478887
Q ss_pred EEcCCCC
Q psy670 286 VKNEFGE 292 (540)
Q Consensus 286 ~~~~~~~ 292 (540)
.....+.
T Consensus 115 L~D~~~~ 121 (141)
T PHA03112 115 LMDLDGP 121 (141)
T ss_pred EecCCch
Confidence 7765544
No 425
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=68.00 E-value=36 Score=23.27 Aligned_cols=59 Identities=12% Similarity=0.275 Sum_probs=35.6
Q ss_pred ceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEE
Q psy670 24 FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNF 90 (540)
Q Consensus 24 ~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v 90 (540)
....|+++++.+.. +.+...... . .+..-+.+...+.|.+++.+....|..-......|
T Consensus 7 v~H~W~~~g~~~~~---i~l~i~g~r--~---Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVAR---IPLPISGGR--W---RTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEE---EEEeccCCC--E---EEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 56799999997642 222222222 1 12222333448999999999998887655544433
No 426
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=66.40 E-value=50 Score=24.33 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
.|....+..|+++.+.|...-.-+..+.|.-.= ..+..... ...+.+.+++. .....|.+.-..
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~------------W~~f~LsnV~~--ds~~~C~~~C~g 74 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQ------------WKAFQLSNVTE--DSSPLCFFNCSG 74 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETT------------EEEEEEEEE-S--CEEEEEEEEETT
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCc------------EEEEEEEcccc--CCeEEEEEEcCC
Confidence 455667788999999999865333345553221 11111111 23577788875 356789887643
Q ss_pred CCeeeeEEEEEee
Q psy670 291 GESNANLNLNIEA 303 (540)
Q Consensus 291 ~~~~~~~~l~v~~ 303 (540)
.....++.|+|..
T Consensus 75 ~Q~~~~~~ItVY~ 87 (91)
T PF03921_consen 75 EQSSASANITVYK 87 (91)
T ss_dssp EEEEEEEEEEEEB
T ss_pred eEEEeEEeeEEeC
Confidence 3445566666654
No 427
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=65.41 E-value=51 Score=24.05 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=36.6
Q ss_pred eEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 328 ~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
...|...+.+. ...+.|+.||..+....... .+.+.. ...|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~------------~~~~~~---~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH------------QLFWQP---DRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCC------------eEEeCC---CCCeeEEEEEEcCCCCEEE
Confidence 45566666665 44899999999984322211 333332 3569999999888876654
No 428
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=64.90 E-value=25 Score=24.80 Aligned_cols=53 Identities=15% Similarity=0.034 Sum_probs=36.4
Q ss_pred CCCeEEEEEEEee-ecCCceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670 468 KKKTVVIECKVMS-MYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIV 522 (540)
Q Consensus 468 ~g~~~~l~C~v~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~ 522 (540)
.++.+.|.....+ .....+.|..++...... ..........|.|+.++.+.+-
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~--~~~~~~y~~~G~y~v~l~v~n~ 66 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTG--PTVTHTYTKPGTYTVTLTVTNA 66 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCC--CCEEEEeCCCcEEEEEEEEEcC
Confidence 5788889888765 334588898765533332 3445566789999998887653
No 429
>PHA03286 envelope glycoprotein E; Provisional
Probab=64.14 E-value=1.5e+02 Score=29.03 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=48.5
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccC---C-CC---CC----CeE-EeCCceEEeeCCCeEEEEEE
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAE---P-EG---DP----PTF-IEKPKIRSEQGGKLVVMECK 334 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~---~-~~---~~----p~~-~~~~~~~~~~~g~~v~l~C~ 334 (540)
.|.|.+++.+++|.|+-...|+.+.. ...+.+.|..... + .. .| ..+ +..........|+++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 68999999999999999998876554 3344455543211 1 00 01 111 12233445567999988777
Q ss_pred EE-cc-C---CCeEEEEE
Q psy670 335 VK-AK-P---MPEIVWFH 347 (540)
Q Consensus 335 ~~-~~-p---~~~i~W~~ 347 (540)
.. .. . ..+|.|++
T Consensus 208 l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EeecccCCCceEEEEEEE
Confidence 65 21 1 23789986
No 430
>PHA03286 envelope glycoprotein E; Provisional
Probab=62.38 E-value=90 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEec
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQG 199 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~ 199 (540)
.|+|.+++..++|.|+-...++.+.. ...+-|.|.+
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 79999999999999999999887765 4455566654
No 431
>PHA03112 IL-18 binding protein; Provisional
Probab=56.98 E-value=35 Score=27.35 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=40.6
Q ss_pred eCCCeEEEEEEEEcc-CCC-eEEEEECCE-EccCCC---------ceEEEEEecCCeeEEEEEEcCCCCC-CCeeEEEEE
Q psy670 324 QGGKLVVMECKVKAK-PMP-EIVWFHEGK-ELQQTD---------RISWNVTLKGDKYHIRLEVKDPRKE-DTGLYKCNI 390 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~-p~~-~i~W~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a 390 (540)
.+++.+.|+|.+-+. |.. -+.|..++. ...+.. ..........+.....|.+.+++.+ +.-.++|..
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 458999999999864 554 479997652 222110 0000111122233335665666543 334778877
Q ss_pred EcCCeeeEE
Q psy670 391 KNFHGELNA 399 (540)
Q Consensus 391 ~n~~g~~~~ 399 (540)
....+...+
T Consensus 116 ~D~~~~~k~ 124 (141)
T PHA03112 116 MDLDGPIKK 124 (141)
T ss_pred ecCCchhhH
Confidence 766554443
No 432
>KOG0200|consensus
Probab=52.70 E-value=84 Score=32.98 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=59.3
Q ss_pred EEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceE
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDII 135 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~ 135 (540)
..+.+..+...|.|.|+|.+.+ ....+.+. ........+. ...........+....+ +...+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 79 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN----INLIISLD-DIVIHRPILL-----AGENANPNTVVTVGVPL---AFSIPQPFIK 79 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec----CceeeEee-cccCcccccc-----cCCCCCcceeeccccee---eeecCCCcce
Confidence 4788899999999999999988 11121221 1111000011 00111222334444555 3233366778
Q ss_pred EEeCCEee-----cCCCceEE------EEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670 136 WYQGTKVI-----EDTGRIKM------SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184 (540)
Q Consensus 136 W~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 184 (540)
|.+..... ........ ...... +.....+.+.++...+.|.|.|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 80 WGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeeeecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 87644211 00000000 000001 22344789999999999999999876
No 433
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=49.13 E-value=23 Score=35.40 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=18.4
Q ss_pred EEEEcCCCCCCC-eEEEEEEE--cCC-ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC----
Q psy670 164 RLEINNPTKDDG-GNYRCNAC--NSI-GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP---- 235 (540)
Q Consensus 164 ~L~i~~~~~~d~-G~Y~C~~~--~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p---- 235 (540)
.|.|......-+ ..|...+. ... ......+.|.|...+. .+.+. ......+..++.+.|.....-.|
T Consensus 39 ~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l----~~~I~-gG~~~~~~~~~~i~ldgs~S~Dpd~~~ 113 (440)
T PF02010_consen 39 QLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPL----VAVIK-GGSSRTVGYNSDITLDGSQSYDPDGPP 113 (440)
T ss_dssp ECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE-----------------------------------------
T ss_pred EEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccc----eeEEc-CCccceeecCceEEEeeEEEecccccc
Confidence 678877666322 34555565 222 2346666677764322 22222 12222333345666665443222
Q ss_pred ---CCeEEEEeCC
Q psy670 236 ---RPEVKWFKAD 245 (540)
Q Consensus 236 ---~~~v~W~~~~ 245 (540)
..++.|.-..
T Consensus 114 ~~~~l~y~W~C~~ 126 (440)
T PF02010_consen 114 GDSGLTYSWSCTD 126 (440)
T ss_dssp -------------
T ss_pred cCCceEEEEEEeC
Confidence 2457786643
No 434
>PHA03281 envelope glycoprotein E; Provisional
Probab=48.48 E-value=1.8e+02 Score=29.22 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=46.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCc----------eeecCCCCeEEEEEEec
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPR----------IIPNESGTLIQMKCKCS 232 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~----------~~~~~~g~~~~l~C~~~ 232 (540)
.|.|.+++..++|.|+-..+...|.. ...+-|.|...+......|.+...+. ......|+++.+.-...
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~ 378 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQ 378 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEe
Confidence 79999999999999999888665544 33555666654321111222221111 12334688877766653
Q ss_pred cc--C---CCeEEEEe
Q psy670 233 AK--P---RPEVKWFK 243 (540)
Q Consensus 233 ~~--p---~~~v~W~~ 243 (540)
.. . ...+.|+.
T Consensus 379 s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 379 YKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeccCCCceeEEEEEE
Confidence 21 1 23677875
No 435
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=45.95 E-value=17 Score=35.94 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCc
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGE 201 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~ 201 (540)
.|.|.+++.+|+|.|+-...+..+.. ...+.|.|....
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~ 128 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPA 128 (439)
T ss_dssp ---------------------------------------
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCC
Confidence 69999999999999999998766554 445666666543
No 436
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=45.32 E-value=23 Score=23.76 Aligned_cols=41 Identities=5% Similarity=0.218 Sum_probs=23.2
Q ss_pred EEEEEEeeecCCceEEEecCeecCCCCeEEEEEEecCCeEEEEE
Q psy670 473 VIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFE 516 (540)
Q Consensus 473 ~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~ 516 (540)
+|+|.....- -+.||-||..+-.-...++.+. .-.++|+|.
T Consensus 2 tltC~s~~sL--PiswYcN~TRLlRlt~~Tlt~~-~ltcNFtCV 42 (71)
T PF11049_consen 2 TLTCPSNASL--PISWYCNGTRLLRLTQQTLTVV-TLTCNFTCV 42 (71)
T ss_pred ceecCCCCCC--cccEEECCceeeeecCCeEeee-eeeEEeeec
Confidence 5778765443 3569999987654333344332 224556663
No 437
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=43.96 E-value=45 Score=27.59 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.4
Q ss_pred EEEEEcccccCCCeeEEEEEEccCcce
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~ 82 (540)
.-|.|++.+.+|+|.|.-++.-.....
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCC
Confidence 469999999999999999998664433
No 438
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=43.28 E-value=2e+02 Score=24.07 Aligned_cols=163 Identities=15% Similarity=0.241 Sum_probs=80.7
Q ss_pred EEEEEEEeecCCCceEEEeCCEeecCCCceEEE----EeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC---cee-EE
Q psy670 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS----KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI---GES-NA 191 (540)
Q Consensus 120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~-~~ 191 (540)
..-.|.+..+..-.|.|+-+...+..-.+.... .+....+...+.|.+.=+..----..+|.+-... |.. ..
T Consensus 4 l~A~CtVetn~~ls~fWkigk~svDaf~rgtthTR~mrngvpvyalVstlk~pw~nviplt~ITCaaC~~nf~~g~~~dl 83 (226)
T PF05955_consen 4 LEASCTVETNSGLSFFWKIGKASVDAFNRGTTHTRLMRNGVPVYALVSTLKVPWLNVIPLTKITCAACPTNFVAGDENDL 83 (226)
T ss_pred eeeEEEEEecCceEEEEEeCCeeEeeecCCceeeeeeeCcEehhheeehhcccccccccccEEEehhcchhhcccCcCCc
Confidence 456799977777899999876655332222111 1112222333455544433333346778764221 111 11
Q ss_pred EEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecC---CCeEE
Q psy670 192 NIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQ---DDTYE 266 (540)
Q Consensus 192 ~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~~~ 266 (540)
..-..+... -|-. .+......-..|+. -.|..+. ...|.++|......+.++.-.+....-. =+...
T Consensus 84 ~sCt~kstt------IPCpgqqrthIfFs~kg~r--AvCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilr 155 (226)
T PF05955_consen 84 NSCTTKSTT------IPCPGQQRTHIFFSAKGHR--AVCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILR 155 (226)
T ss_pred ceeEeeccc------ccCCCcceEEEEEeccCcE--EEEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEe
Confidence 111111100 0000 00111111223443 3577765 5678999998887776654333311111 11223
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
+...+...+-.+.-.|.|.+....
T Consensus 156 S~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 156 SEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred eeeecccCCCCCcccEEecccccc
Confidence 456777777778889999887643
No 439
>PHA03282 envelope glycoprotein E; Provisional
Probab=39.14 E-value=51 Score=32.18 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEEcccccCCCeeEEEEEEcc
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNK 78 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~ 78 (540)
..|++.|+..+++|.|.|.+...
T Consensus 333 VdL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred cceEecCCCcccCceEEEEEEEC
Confidence 37889999999999999998743
No 440
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=37.75 E-value=2.4e+02 Score=23.56 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=38.1
Q ss_pred EEEEEc-cCCCeEEEEECCEEccCCCceE--EEEEec-CCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 332 ECKVKA-KPMPEIVWFHEGKELQQTDRIS--WNVTLK-GDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 332 ~C~~~~-~p~~~i~W~~~~~~~~~~~~~~--~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
.|..+. ...|.|+|......+.++.-.. ..+..+ -....+.+.|...+-.++-.|.|.+.-.
T Consensus 113 vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred EEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccc
Confidence 377654 5678999998877776544211 112111 1112346677777777888899987543
No 441
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=34.62 E-value=2.3e+02 Score=22.67 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=25.2
Q ss_pred eceeecCCcEEEecCCCeEEEEEEEe--eecCC---ceEEEe----------cCeecCCCCeEEE
Q psy670 454 VPVIREVPKVVTISKKKTVVIECKVM--SMYEP---SVTWMK----------EKNTVKEDNKHVV 503 (540)
Q Consensus 454 ~p~i~~~~~~~~~~~g~~~~l~C~v~--g~p~~---~v~W~~----------~~~~l~~~~~~~~ 503 (540)
|-.+...|-...+..|+++.+.|... |+-.. .++|+. +|..+.+++.+-+
T Consensus 32 pF~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L 96 (137)
T PF12988_consen 32 PFTVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPL 96 (137)
T ss_dssp SEEEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-
T ss_pred CcEEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceec
Confidence 44555556566778899999999987 43322 566664 3445555555443
No 442
>PHA03240 envelope glycoprotein M; Provisional
Probab=33.89 E-value=57 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=18.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQ 138 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~ 138 (540)
++...+|+.|+|--.---.|...+.|++
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEe
Confidence 3456778888886544234666889988
No 443
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=31.27 E-value=1.8e+02 Score=20.20 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=18.9
Q ss_pred ccCCCeEEEEEEEee-cCCCceEEEeCCE
Q psy670 114 HQDGDLLVMECVLEA-SPMPDIIWYQGTK 141 (540)
Q Consensus 114 v~~G~~v~l~C~~~~-~p~~~v~W~~~~~ 141 (540)
...|..+.|.....+ .....+.|..++.
T Consensus 11 ~~~~~~v~f~~~~~~~~~~~~~~W~fgdg 39 (79)
T smart00089 11 GVAGESVTFTATSSDDGSIVSYTWDFGDG 39 (79)
T ss_pred CCCCCEEEEEEECCCCCCeEEEEEEeCCC
Confidence 336888999988754 3345788976543
No 444
>PHA03240 envelope glycoprotein M; Provisional
Probab=30.96 E-value=68 Score=27.56 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=18.4
Q ss_pred eEEEEEEcccccCCCeeEEEEEE
Q psy670 54 YLAVLTIKNVQKSDSGEYKVIAK 76 (540)
Q Consensus 54 ~~~~L~i~~~~~~D~G~Y~C~~~ 76 (540)
.+++|.|-++..+|.|+| |+-.
T Consensus 103 ~NstL~i~~vn~sd~~nY-cr~k 124 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEY-CRKK 124 (258)
T ss_pred ccceEEEEEEeecCcchh-hhcc
Confidence 458999999999999999 5544
No 445
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=29.74 E-value=1e+02 Score=25.49 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
-|.|.+.+.+|+|.|.-.++-+....
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCC
Confidence 69999999999999999998655443
No 446
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=29.15 E-value=1.9e+02 Score=19.61 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=20.0
Q ss_pred ecCCCCeEEEEEEecccCCCeEEEEeCC
Q psy670 218 PNESGTLIQMKCKCSAKPRPEVKWFKAD 245 (540)
Q Consensus 218 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~ 245 (540)
.+..|+.+.|...........+.|...+
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 3456888999887744445689999988
No 447
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=29.04 E-value=78 Score=31.54 Aligned_cols=263 Identities=13% Similarity=0.096 Sum_probs=17.8
Q ss_pred EEEEEcccccCC-CeeEEEEEE-ccCcc--eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecC-
Q psy670 56 AVLTIKNVQKSD-SGEYKVIAK-NKNGE--GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASP- 130 (540)
Q Consensus 56 ~~L~i~~~~~~D-~G~Y~C~~~-~~~~~--~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p- 130 (540)
..|.|.+....- ...|...+. ..... ....+.|.|...+..+.|..+ ....+..++.+.|.....-.|
T Consensus 38 ~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG-------~~~~~~~~~~i~ldgs~S~Dpd 110 (440)
T PF02010_consen 38 PQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGG-------SSRTVGYNSDITLDGSQSYDPD 110 (440)
T ss_dssp SECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred eEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCC-------ccceeecCceEEEeeEEEeccc
Confidence 367787766622 234566666 22222 345566666654433333221 112233345566665432222
Q ss_pred ------CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE--cCCc-eeEEEEEEEEecCc
Q psy670 131 ------MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC--NSIG-ESNANIALNFQGGE 201 (540)
Q Consensus 131 ------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~--~~~~-~~~~~~~l~v~~~~ 201 (540)
..++.|.-....-.... ................|.|......-...|...+. ...+ .......+.+....
T Consensus 111 ~~~~~~~l~y~W~C~~~~~~~~C-~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~ 189 (440)
T PF02010_consen 111 GPPGDSGLTYSWSCTDLSSNSAC-STPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGD 189 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCceEEEEEEeCCceeccc-cccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCC
Confidence 23677865322211000 00000000011112256665444433333665554 3333 23444444444321
Q ss_pred CCCCCCCeeccCCc---eeecCCCCeEEEEEEeccc----CCCeEEEEeCCEEeec--cCceE-EEEecCCCeEEEEEEE
Q psy670 202 NGAGFAPSFIEKPR---IIPNESGTLIQMKCKCSAK----PRPEVKWFKADKLVKE--SSKIK-IIVNEQDDTYEIICEI 271 (540)
Q Consensus 202 ~~~~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~----p~~~v~W~~~~~~l~~--~~~~~-~~~~~~~~~~~~~l~i 271 (540)
+|.+..... ...+..++.+.|.-.+.+. ....+.|......... ..... .......+.....|.|
T Consensus 190 -----~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi 264 (440)
T PF02010_consen 190 -----PPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVI 264 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccc
Confidence 233222211 1236667777766555432 2346888760000000 00000 0000011112235666
Q ss_pred eCCCCCCcEEEEEE--EEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE
Q psy670 272 TDPIGPDSGTYRCN--VKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336 (540)
Q Consensus 272 ~~~~~~d~g~y~C~--~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~ 336 (540)
..-.......|... +....+.. ...+.+.+...|. ...+...|... ......+++.|..-
T Consensus 265 ~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~----~g~c~v~P~~G-~al~T~Ft~~c~~~ 327 (440)
T PF02010_consen 265 DPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPS----GGSCSVSPSSG-YALETTFTITCSGW 327 (440)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc----ccccccccccc-cccccccccccccc
Confidence 55444455566654 44443332 4445555543211 11233333322 33457789999753
No 448
>KOG0200|consensus
Probab=25.64 E-value=8.1e+02 Score=25.82 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=56.1
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEccCCCeEEEE
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~ 346 (540)
.+.+..+...+.|.|+|.+.+ ......+. ... ...+.+. ..+.......+....+ +...+.+.+.|.
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 81 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN----INLIISLD--DIV---IHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWG 81 (609)
T ss_pred eEEEEEEEecCCccEEEEEec----CceeeEee--ccc---CcccccccCCCCCcceeeccccee---eeecCCCcceee
Confidence 566777788899999999998 11111121 100 0011111 1122233334455555 333335667776
Q ss_pred ECCEEcc----CCCce-----EEEEEe--cCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670 347 HEGKELQ----QTDRI-----SWNVTL--KGDKYHIRLEVKDPRKEDTGLYKCNIKN 392 (540)
Q Consensus 347 ~~~~~~~----~~~~~-----~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 392 (540)
....... ..... ...... ........+.+.++...+.|.|.|...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 6442110 00000 000000 0011233788889999999999998876
No 449
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=25.27 E-value=3.4e+02 Score=21.82 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=37.8
Q ss_pred cCCcEEEecCCCeEEEEEEEee-ecCC-ceEEEecCeecCCCCeEEEEEEecCCeEE--EEEE
Q psy670 459 EVPKVVTISKKKTVVIECKVMS-MYEP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSM--NFEL 517 (540)
Q Consensus 459 ~~~~~~~~~~g~~~~l~C~v~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~g~y--~c~~ 517 (540)
-.|....+.+|+.++|.-.-.. .+.. .+.|+.-...+..+...++.+.....|.| .|..
T Consensus 58 ~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gis~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 58 NEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGISEVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred EcCCEEEECCCCEEEEEEEeCCCCccceEECCCCcceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 4567788999999988654221 1111 34555445567777777778888888875 4543
No 450
>PHA03290 envelope glycoprotein I; Provisional
Probab=23.28 E-value=1.7e+02 Score=27.39 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.7
Q ss_pred EEEEEcccccCCCeeEEEEEEccCc
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNG 80 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~ 80 (540)
--|+|.+.+.+|+|.|.-++.-...
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldga 153 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDHS 153 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCC
Confidence 5799999999999999999986543
No 451
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.35 E-value=1.7e+02 Score=27.17 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.7
Q ss_pred EEEEEcccccCCCeeEEEEEEccCc
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNKNG 80 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~~~ 80 (540)
.-|.|.+.+.+|+|.|.-++.-...
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCC
Confidence 3799999999999999999986644
No 452
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.63 E-value=2.9e+02 Score=18.78 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=12.2
Q ss_pred eCCCeEEEEEEEEccCCCeEEEEE
Q psy670 324 QGGKLVVMECKVKAKPMPEIVWFH 347 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~p~~~i~W~~ 347 (540)
..|+.++| .|.+...+.|++
T Consensus 3 ~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred eEcCcEEE----eCCCCCceEEEE
Confidence 34666665 344555789983
Done!