Query psy670
Match_columns 540
No_of_seqs 298 out of 3040
Neff 11.1
Searched_HMMs 29240
Date Sat Aug 17 00:48:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 3.8E-56 1.3E-60 457.0 50.7 428 7-522 24-464 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 1.4E-55 4.7E-60 452.8 49.4 426 8-524 121-560 (570)
3 1e07_A Carcinoembryonic antige 100.0 1.5E-47 5.2E-52 399.9 45.6 404 8-525 223-631 (642)
4 3dmk_A DOWN syndrome cell adhe 100.0 7.2E-48 2.5E-52 413.5 41.4 418 7-523 362-798 (816)
5 1e07_A Carcinoembryonic antige 100.0 1.3E-46 4.5E-51 392.9 46.8 416 7-537 130-559 (642)
6 2rcj_C Light chain; immunoglob 100.0 7.6E-47 2.6E-51 384.8 39.5 446 7-523 19-513 (523)
7 2ec8_A MAST/stem cell growth f 100.0 3.6E-47 1.2E-51 387.3 36.5 402 25-523 63-499 (524)
8 3qs9_E FL cytokine receptor; i 100.0 4.5E-47 1.5E-51 382.5 36.5 405 7-524 67-500 (527)
9 3dmk_A DOWN syndrome cell adhe 100.0 5.4E-46 1.8E-50 399.0 39.0 424 8-537 268-715 (816)
10 2ocw_A Polymeric-immunoglobuli 100.0 9.4E-45 3.2E-49 374.8 45.2 429 7-521 19-532 (585)
11 1z7z_I Intercellular adhesion 100.0 2.9E-45 1E-49 366.0 34.1 395 7-524 18-439 (450)
12 3qs7_E FL cytokine receptor; i 100.0 6E-43 2.1E-47 343.4 32.9 381 64-524 3-404 (423)
13 3kld_A Contactin 4, axcam, BIG 100.0 7.3E-43 2.5E-47 340.6 30.7 349 7-407 27-383 (384)
14 3p3y_A Neurofascin; IG domains 100.0 1.7E-42 5.9E-47 341.2 31.0 354 7-407 36-403 (404)
15 3v2a_R Vascular endothelial gr 100.0 1.4E-45 4.9E-50 393.9 9.3 444 8-533 244-754 (772)
16 3laf_A Deleted in colorectal c 100.0 1.6E-41 5.3E-46 334.2 34.1 349 8-407 41-401 (403)
17 3qs7_E FL cytokine receptor; i 100.0 6.1E-41 2.1E-45 329.2 34.6 344 7-409 67-416 (423)
18 1cs6_A Axonin-1; neural cell a 100.0 3.3E-41 1.1E-45 329.3 31.7 345 7-406 26-381 (382)
19 3laf_A Deleted in colorectal c 100.0 3.8E-40 1.3E-44 324.3 34.5 344 111-525 30-392 (403)
20 1bih_A Hemolin; insect immunit 100.0 1.4E-40 4.8E-45 326.5 29.7 348 8-405 26-394 (395)
21 2v5m_A Dscam; neurobiology SPL 100.0 2.7E-40 9.4E-45 323.5 29.4 337 7-405 23-387 (388)
22 3kld_A Contactin 4, axcam, BIG 100.0 1.1E-39 3.6E-44 318.3 32.0 335 115-523 21-372 (384)
23 3v2a_R Vascular endothelial gr 100.0 2.4E-41 8.3E-46 361.2 19.4 420 8-521 148-648 (772)
24 2ec8_A MAST/stem cell growth f 100.0 1.4E-39 4.8E-44 331.3 29.9 360 7-409 133-512 (524)
25 3p3y_A Neurofascin; IG domains 100.0 2.5E-39 8.6E-44 318.6 29.9 344 110-525 25-394 (404)
26 1cs6_A Axonin-1; neural cell a 100.0 1.3E-38 4.3E-43 311.0 32.7 335 115-524 20-372 (382)
27 2v5m_A Dscam; neurobiology SPL 100.0 1E-38 3.4E-43 312.4 27.9 335 112-523 14-378 (388)
28 3qs9_E FL cytokine receptor; i 100.0 2.9E-38 9.9E-43 318.3 31.5 346 111-537 57-416 (527)
29 1bih_A Hemolin; insect immunit 100.0 8.8E-39 3E-43 313.7 26.4 344 111-524 15-386 (395)
30 2ocw_A Polymeric-immunoglobuli 100.0 5.9E-37 2E-41 316.5 38.3 360 7-409 131-548 (585)
31 2rcj_C Light chain; immunoglob 100.0 5.5E-37 1.9E-41 312.1 33.0 366 7-395 133-512 (523)
32 1z7z_I Intercellular adhesion 100.0 3.2E-37 1.1E-41 307.8 27.1 329 7-407 105-449 (450)
33 1qgc_4 Protein (immunoglobulin 100.0 2.4E-37 8E-42 307.8 23.1 368 7-403 20-435 (438)
34 1wio_A CD4, T-cell surface gly 100.0 6.8E-38 2.3E-42 303.4 18.1 311 7-405 13-361 (363)
35 1wio_A CD4, T-cell surface gly 100.0 1.1E-37 3.8E-42 301.8 18.4 308 112-519 4-349 (363)
36 2rik_A Titin; I-SET IG fold, p 100.0 5.3E-35 1.8E-39 273.0 34.7 269 111-406 14-283 (284)
37 2rik_A Titin; I-SET IG fold, p 100.0 2.9E-34 1E-38 268.0 32.9 259 8-302 25-283 (284)
38 1qgc_4 Protein (immunoglobulin 100.0 1.5E-35 5.1E-40 294.8 24.1 351 111-522 10-427 (438)
39 2yd9_A Receptor-type tyrosine- 100.0 1.6E-33 5.4E-38 265.7 28.3 279 111-412 15-296 (304)
40 1igt_B IGG2A intact antibody - 100.0 4.5E-34 1.6E-38 284.3 25.8 369 7-395 19-433 (444)
41 1igt_B IGG2A intact antibody - 100.0 4.7E-34 1.6E-38 284.2 24.9 363 111-523 9-434 (444)
42 1qz1_A Neural cell adhesion mo 100.0 1.3E-32 4.4E-37 257.8 30.2 270 111-407 11-290 (291)
43 1iga_A IGA1; immunoglobulin; N 100.0 2.6E-32 8.7E-37 273.8 32.4 369 7-396 20-443 (475)
44 1hzh_H IGG, immunoglobulin hea 100.0 1.8E-33 6.3E-38 280.9 22.5 369 7-396 19-443 (457)
45 1hzh_H IGG, immunoglobulin hea 100.0 1.2E-33 4E-38 282.3 19.8 362 111-523 9-443 (457)
46 1iga_A IGA1; immunoglobulin; N 100.0 6.3E-32 2.2E-36 270.9 32.1 362 110-523 9-443 (475)
47 2yd9_A Receptor-type tyrosine- 100.0 5E-32 1.7E-36 255.4 28.9 268 206-524 5-281 (304)
48 2y25_A Myomesin; structural pr 100.0 6E-33 2.1E-37 263.5 22.6 275 112-407 16-315 (317)
49 2wim_A N-CAM 2, NCAM2, neural 100.0 2.4E-32 8.2E-37 256.0 25.6 268 110-408 12-285 (291)
50 2y23_A Myomesin; structural pr 100.0 5.1E-31 1.8E-35 249.6 27.2 280 110-406 9-311 (312)
51 1igy_B IGG1 intact antibody MA 100.0 9.1E-35 3.1E-39 288.3 1.1 369 7-396 18-424 (434)
52 3oq3_B IFN-alpha/beta binding 100.0 5.6E-31 1.9E-35 250.9 27.3 268 111-405 38-328 (329)
53 4fqp_A Poliovirus receptor; im 100.0 4.3E-31 1.5E-35 250.0 24.7 274 111-409 9-306 (313)
54 1igy_B IGG1 intact antibody MA 100.0 1.9E-34 6.3E-39 286.1 0.8 362 111-523 8-424 (434)
55 2wim_A N-CAM 2, NCAM2, neural 100.0 1.5E-30 5.1E-35 243.8 26.9 254 8-304 24-285 (291)
56 1qz1_A Neural cell adhesion mo 100.0 5.2E-30 1.8E-34 240.0 29.5 257 207-524 2-280 (291)
57 1itb_B Type 1 interleukin-1 re 100.0 5.8E-31 2E-35 249.5 20.6 274 111-406 14-313 (315)
58 1zvo_C Myeloma immunoglobulin 100.0 3.7E-29 1.3E-33 252.3 34.5 361 111-523 9-492 (512)
59 1ry7_B FGFR-3, fibroblast grow 100.0 2.7E-32 9.3E-37 261.0 10.8 282 110-407 16-327 (334)
60 2y23_A Myomesin; structural pr 100.0 2.4E-30 8.2E-35 245.0 23.1 266 13-301 27-310 (312)
61 2y25_A Myomesin; structural pr 100.0 6.6E-31 2.2E-35 249.4 18.8 265 8-303 26-315 (317)
62 1zvo_C Myeloma immunoglobulin 100.0 1.5E-28 5E-33 248.0 36.7 381 7-405 19-503 (512)
63 4dep_C Interleukin-1 receptor 100.0 3E-30 1E-34 248.4 21.5 279 110-407 15-333 (349)
64 2o26_X MAST/stem cell growth f 100.0 5.9E-30 2E-34 239.5 22.7 259 111-407 21-288 (290)
65 1ry7_B FGFR-3, fibroblast grow 100.0 2.7E-31 9.3E-36 254.0 12.7 274 8-305 28-329 (334)
66 3ejj_X Macrophage colony-stimu 100.0 1.7E-29 5.8E-34 236.3 24.3 265 111-407 13-281 (289)
67 1itb_B Type 1 interleukin-1 re 100.0 4E-30 1.4E-34 243.8 18.5 265 7-302 24-313 (315)
68 2wng_A Tyrosine-protein phosph 100.0 1E-29 3.5E-34 242.1 21.0 280 110-403 11-316 (327)
69 4fom_A Poliovirus receptor-rel 100.0 1.2E-29 4.2E-34 239.5 20.7 269 111-407 8-300 (308)
70 3rjd_A High affinity immunoglo 100.0 2.8E-29 9.6E-34 231.2 22.2 232 112-397 11-249 (262)
71 3oq3_B IFN-alpha/beta binding 100.0 6.2E-29 2.1E-33 236.8 23.3 248 22-301 66-328 (329)
72 3o4o_C Interleukin-1 receptor 100.0 2.4E-30 8.3E-35 247.9 13.6 279 110-407 26-335 (339)
73 3u83_A Poliovirus receptor-rel 100.0 5.4E-29 1.8E-33 237.7 20.6 267 111-407 23-320 (331)
74 2o26_X MAST/stem cell growth f 100.0 1.8E-28 6.1E-33 229.4 22.4 241 25-303 39-288 (290)
75 2oz4_A Intercellular adhesion 100.0 3E-28 1E-32 224.6 21.6 239 111-407 12-264 (265)
76 2wng_A Tyrosine-protein phosph 100.0 1.2E-28 4E-33 234.8 19.5 265 7-293 22-309 (327)
77 4fqp_A Poliovirus receptor; im 100.0 2.2E-28 7.6E-33 231.4 20.9 268 7-304 19-305 (313)
78 3mjg_X Beta-type platelet-deri 100.0 6.2E-28 2.1E-32 225.7 23.0 263 111-407 9-278 (289)
79 4dep_C Interleukin-1 receptor 100.0 1.3E-28 4.4E-33 236.9 18.3 273 8-303 27-333 (349)
80 3ejj_X Macrophage colony-stimu 100.0 6.3E-28 2.1E-32 225.6 22.3 247 25-303 31-281 (289)
81 3o4o_C Interleukin-1 receptor 100.0 3E-29 1E-33 240.3 13.4 263 8-301 38-333 (339)
82 4fom_A Poliovirus receptor-rel 100.0 4.1E-28 1.4E-32 229.1 18.6 221 56-303 74-300 (308)
83 4dkd_C Macrophage colony-stimu 100.0 2.4E-28 8E-33 228.9 15.5 264 111-407 13-281 (292)
84 3rjd_A High affinity immunoglo 100.0 3.2E-27 1.1E-31 217.4 21.8 233 208-520 2-245 (262)
85 3u83_A Poliovirus receptor-rel 100.0 5.2E-27 1.8E-31 223.9 23.7 263 8-304 34-321 (331)
86 3vh8_G Killer cell immunoglobu 100.0 2.3E-27 7.7E-32 224.7 18.8 266 112-407 33-313 (316)
87 2nzi_A Titin; IG-domain, FNIII 100.0 3E-26 1E-30 216.0 25.6 255 111-400 13-283 (305)
88 2oz4_A Intercellular adhesion 100.0 8.3E-27 2.8E-31 214.9 21.2 227 218-524 14-254 (265)
89 2jll_A NCAM2, neural cell adhe 99.9 1.3E-24 4.3E-29 212.4 36.2 340 7-400 19-378 (389)
90 2wqr_A IG epsilon chain C regi 99.9 3.6E-27 1.2E-31 223.9 15.7 272 118-396 25-309 (323)
91 2wqr_A IG epsilon chain C regi 99.9 7.8E-27 2.7E-31 221.6 16.1 272 7-292 28-309 (323)
92 1za6_B IGG heavy chain; immuno 99.9 7.5E-27 2.6E-31 223.8 15.8 279 111-396 9-330 (344)
93 2jll_A NCAM2, neural cell adhe 99.9 8.4E-24 2.9E-28 206.5 36.9 263 111-405 9-286 (389)
94 4dkd_C Macrophage colony-stimu 99.9 1E-26 3.4E-31 217.8 15.5 246 26-304 32-282 (292)
95 2nzi_A Titin; IG-domain, FNIII 99.9 4.9E-25 1.7E-29 207.7 27.1 266 207-523 4-279 (305)
96 3mjg_X Beta-type platelet-deri 99.9 1.4E-25 4.9E-30 209.6 22.9 244 26-305 28-280 (289)
97 3vh8_G Killer cell immunoglobu 99.9 6.6E-26 2.3E-30 214.6 15.7 249 207-521 24-295 (316)
98 2yd1_A Tyrosine-protein phosph 99.9 6.2E-23 2.1E-27 182.1 26.4 191 206-407 5-200 (212)
99 2a38_A Titin; Z1Z2, structural 99.9 1.1E-23 3.7E-28 184.2 20.6 188 207-406 5-194 (194)
100 2j8h_A Titin, connectin; cardi 99.9 1.7E-23 5.8E-28 183.5 21.8 191 207-406 4-196 (197)
101 2yd6_A PTPRD protein; hydrolas 99.9 4.1E-23 1.4E-27 183.2 24.0 196 207-407 6-204 (212)
102 1za6_B IGG heavy chain; immuno 99.9 1.3E-24 4.5E-29 208.1 13.7 280 214-522 7-329 (344)
103 2wv3_A Neuroplastin; igcam, me 99.9 2E-22 6.9E-27 175.4 23.9 178 207-406 3-189 (190)
104 3lcy_A Titin; A-BAND, IG tande 99.9 8.1E-23 2.8E-27 179.0 21.5 190 206-407 6-196 (197)
105 3rbs_A Myomesin-1; immunoglobu 99.9 9.4E-23 3.2E-27 179.2 20.5 187 207-405 3-205 (207)
106 2c5d_C AXL oncogene, tyrosine- 99.9 3E-22 1E-26 175.1 22.7 181 207-405 2-191 (195)
107 2yd1_A Tyrosine-protein phosph 99.9 4E-22 1.4E-26 176.8 23.3 183 111-304 15-201 (212)
108 2a38_A Titin; Z1Z2, structural 99.9 1.5E-22 5.1E-27 176.9 19.9 178 111-301 14-193 (194)
109 1rhf_A Tyrosine-protein kinase 99.9 5.2E-22 1.8E-26 171.5 23.1 178 207-406 2-182 (182)
110 2yd6_A PTPRD protein; hydrolas 99.9 2.6E-22 8.9E-27 178.0 21.2 186 311-538 6-207 (212)
111 1epf_A NCAM, protein (neural c 99.9 2.5E-22 8.6E-27 175.0 20.4 184 208-406 3-190 (191)
112 2iep_A Muscle-specific kinase 99.9 2.6E-22 8.8E-27 175.1 20.3 181 207-407 7-190 (192)
113 2v44_A NCAM2, neural cell adhe 99.9 3.9E-22 1.3E-26 173.4 20.4 179 211-406 6-186 (189)
114 2j8h_A Titin, connectin; cardi 99.9 4.5E-22 1.5E-26 174.4 20.6 182 111-302 13-196 (197)
115 2va4_A NCAM2, N-CAM 2, neural 99.9 1.1E-21 3.9E-26 171.0 23.0 184 207-406 2-192 (192)
116 2v5t_A NCAM2, N-CAM 2, neural 99.9 3E-22 1E-26 174.2 18.9 183 207-407 2-188 (189)
117 2wv3_A Neuroplastin; igcam, me 99.9 1.1E-21 3.6E-26 170.8 22.2 168 113-302 13-189 (190)
118 4fa8_A Secreted protein BARF1; 99.9 4.5E-23 1.5E-27 180.2 13.1 170 217-399 3-194 (203)
119 2c5d_C AXL oncogene, tyrosine- 99.9 1.9E-21 6.3E-26 170.1 21.7 174 110-301 10-191 (195)
120 3rbs_A Myomesin-1; immunoglobu 99.9 9.7E-22 3.3E-26 172.8 19.8 178 112-301 12-205 (207)
121 3lcy_A Titin; A-BAND, IG tande 99.9 1.9E-21 6.5E-26 170.3 21.1 177 111-303 16-196 (197)
122 4fa8_A Secreted protein BARF1; 99.9 1.2E-22 4.1E-27 177.5 13.3 171 111-295 2-194 (203)
123 2r15_A Myomesin-1; sarcomeric 99.9 7E-21 2.4E-25 168.8 24.5 180 221-407 16-210 (212)
124 2v9r_A Roundabout homolog 1; p 99.9 2.7E-22 9.2E-27 178.0 15.3 189 206-407 8-202 (212)
125 2v44_A NCAM2, neural cell adhe 99.9 1.5E-21 5.2E-26 169.7 19.4 175 110-302 10-186 (189)
126 2r15_A Myomesin-1; sarcomeric 99.9 1.7E-21 5.7E-26 172.9 19.7 176 8-198 22-209 (212)
127 2vr9_A Roundabout 1, ROBO; imm 99.9 6E-22 2.1E-26 176.4 16.2 191 206-407 8-206 (217)
128 3k0w_A Mucosa-associated lymph 99.9 3.2E-21 1.1E-25 171.7 20.7 175 207-407 18-202 (218)
129 1epf_A NCAM, protein (neural c 99.9 3.3E-21 1.1E-25 167.9 20.1 175 111-301 11-189 (191)
130 3grw_A Fibroblast growth facto 99.9 3.3E-21 1.1E-25 174.7 19.8 189 110-305 23-220 (241)
131 2iep_A Muscle-specific kinase 99.9 3.9E-21 1.3E-25 167.6 19.4 175 311-537 7-192 (192)
132 3grw_A Fibroblast growth facto 99.9 4.6E-21 1.6E-25 173.7 20.4 188 214-408 22-219 (241)
133 1rhf_A Tyrosine-protein kinase 99.9 1.9E-20 6.5E-25 161.6 22.9 168 311-526 2-174 (182)
134 2va4_A NCAM2, N-CAM 2, neural 99.9 1E-20 3.5E-25 164.8 21.3 171 112-301 14-191 (192)
135 3s97_C Contactin-1; carbonic a 99.9 4.6E-21 1.6E-25 168.4 18.0 184 211-406 12-200 (201)
136 2ifg_A High affinity nerve gro 99.9 3.2E-22 1.1E-26 191.6 11.3 206 174-407 136-345 (347)
137 2v5t_A NCAM2, N-CAM 2, neural 99.9 5.6E-21 1.9E-25 166.1 18.0 172 111-303 11-188 (189)
138 3ojm_B Fibroblast growth facto 99.9 3.1E-21 1.1E-25 173.6 16.5 186 215-407 27-221 (231)
139 3ojm_B Fibroblast growth facto 99.9 4.1E-21 1.4E-25 172.8 16.8 189 110-305 27-223 (231)
140 2x1w_L Vascular endothelial gr 99.9 7.8E-21 2.7E-25 168.5 17.5 182 213-407 13-207 (213)
141 3sgj_C Human FCG3A receptor; r 99.9 4.9E-21 1.7E-25 168.1 16.1 166 207-408 7-175 (204)
142 2c1o_A IGK-C protein; FAB frag 99.9 1.4E-21 4.8E-26 178.6 13.0 210 170-397 11-245 (254)
143 1f97_A Junction adhesion molec 99.9 3.4E-21 1.1E-25 170.9 14.8 180 209-407 3-207 (212)
144 2c1o_A IGK-C protein; FAB frag 99.9 1.6E-21 5.5E-26 178.2 12.6 210 63-293 11-245 (254)
145 2v9r_A Roundabout homolog 1; p 99.9 8.1E-21 2.8E-25 168.4 15.7 179 111-303 18-202 (212)
146 3k0w_A Mucosa-associated lymph 99.9 1.7E-20 5.8E-25 167.0 17.8 167 110-303 26-202 (218)
147 3b5h_A Cervical EMMPRIN, HAB18 99.9 6.6E-20 2.3E-24 158.5 20.9 168 217-407 8-183 (184)
148 1fnl_A Low affinity immunoglob 99.9 1.6E-20 5.5E-25 160.8 16.6 165 207-407 7-174 (175)
149 3bp6_B Programmed cell death 1 99.8 1.8E-20 6E-25 164.8 15.9 178 110-303 10-193 (202)
150 3p2t_A Leukocyte immunoglobuli 99.8 4.6E-20 1.6E-24 161.2 17.9 183 207-405 5-194 (196)
151 1f97_A Junction adhesion molec 99.8 2.1E-20 7.1E-25 165.7 15.9 174 110-303 9-207 (212)
152 1f2q_A High affinity immunoglo 99.8 1.2E-20 4E-25 161.9 13.6 166 207-408 4-172 (176)
153 2vr9_A Roundabout 1, ROBO; imm 99.8 2.7E-20 9.3E-25 165.6 16.5 179 310-533 8-205 (217)
154 3b5h_A Cervical EMMPRIN, HAB18 99.8 8.1E-20 2.8E-24 158.0 18.3 165 112-302 8-182 (184)
155 1vca_A VCAM-D1,2, human vascul 99.8 3.9E-20 1.3E-24 162.1 15.9 176 112-303 11-197 (202)
156 3s97_C Contactin-1; carbonic a 99.8 1.7E-20 6E-25 164.7 13.6 178 110-302 16-200 (201)
157 3bp6_B Programmed cell death 1 99.8 8.7E-20 3E-24 160.4 17.5 181 212-407 7-193 (202)
158 3sgj_C Human FCG3A receptor; r 99.8 3.4E-20 1.2E-24 162.7 14.3 156 112-304 17-175 (204)
159 1vca_A VCAM-D1,2, human vascul 99.8 5.1E-20 1.7E-24 161.4 14.8 176 217-407 11-197 (202)
160 1mq8_A ICAM-1, intercellular a 99.8 6.9E-20 2.4E-24 167.7 16.1 255 111-407 8-282 (291)
161 1ugn_A LIR1, leukocyte immunog 99.8 1.3E-19 4.3E-24 158.7 17.0 185 207-406 5-197 (198)
162 2ifg_A High affinity nerve gro 99.8 7.4E-21 2.5E-25 182.1 9.8 175 111-303 167-345 (347)
163 2d3v_A Leukocyte immunoglobuli 99.8 8.9E-20 3E-24 159.4 15.9 175 207-396 5-181 (196)
164 2x1w_L Vascular endothelial gr 99.8 6.9E-20 2.3E-24 162.4 14.9 179 111-303 16-207 (213)
165 4f80_A Butyrophilin subfamily 99.8 1.3E-19 4.6E-24 162.2 16.6 181 109-302 11-212 (226)
166 3ry4_A Low affinity immunoglob 99.8 1.3E-19 4.4E-24 154.4 15.4 163 207-405 4-169 (170)
167 2fbo_J V1V2;, variable region- 99.8 1.2E-19 4.2E-24 165.3 15.9 187 213-405 8-250 (250)
168 3jz7_A MCAR, CAR, coxsackievir 99.8 4.1E-20 1.4E-24 164.0 12.3 175 111-302 9-211 (214)
169 3jz7_A MCAR, CAR, coxsackievir 99.8 1.2E-20 4.1E-25 167.5 8.7 178 214-407 7-212 (214)
170 3mj8_L Stimulatory hamster ant 99.8 1.8E-19 6.2E-24 159.8 16.2 185 210-402 4-208 (213)
171 1nbq_A JAM, junctional adhesio 99.8 7.4E-21 2.5E-25 168.2 6.6 180 207-405 4-207 (209)
172 3r4d_A CEA-related cell adhesi 99.8 5.7E-19 2E-23 155.9 18.1 172 111-303 8-200 (208)
173 1f2q_A High affinity immunoglo 99.8 6.2E-20 2.1E-24 157.4 11.4 167 311-540 4-176 (176)
174 1fnl_A Low affinity immunoglob 99.8 2.8E-19 9.7E-24 153.0 15.3 160 311-533 7-172 (175)
175 2ny1_B T-cell surface glycopro 99.8 1.4E-19 4.8E-24 156.4 13.5 164 111-305 4-181 (184)
176 4f80_A Butyrophilin subfamily 99.8 2.4E-19 8.1E-24 160.6 15.3 181 215-407 12-213 (226)
177 4frw_A Poliovirus receptor-rel 99.8 2E-19 6.7E-24 160.0 14.7 186 213-407 5-211 (218)
178 3p2t_A Leukocyte immunoglobuli 99.8 2.3E-19 8E-24 156.7 14.6 163 113-291 15-179 (196)
179 1hng_A CD2; T lymphocyte adhes 99.8 7E-20 2.4E-24 156.6 10.8 135 24-197 28-174 (176)
180 2gi7_A GPVI protein; IG-like d 99.8 2.2E-19 7.5E-24 155.0 13.7 159 207-395 8-168 (184)
181 3r4d_A CEA-related cell adhesi 99.8 2.4E-19 8.2E-24 158.4 14.1 180 216-408 8-201 (208)
182 2d3v_A Leukocyte immunoglobuli 99.8 1.4E-19 4.8E-24 158.1 12.4 164 113-291 15-180 (196)
183 1nbq_A JAM, junctional adhesio 99.8 1.6E-20 5.4E-25 166.1 6.4 170 110-295 12-199 (209)
184 1ugn_A LIR1, leukocyte immunog 99.8 7E-19 2.4E-23 153.9 16.1 164 113-291 15-181 (198)
185 2ny1_B T-cell surface glycopro 99.8 1.3E-19 4.5E-24 156.6 11.3 162 216-407 4-179 (184)
186 3sbw_C Programmed cell death 1 99.8 6.9E-19 2.4E-23 157.1 15.9 183 213-407 7-211 (222)
187 1uct_A Immunoglobulin alpha FC 99.8 5.3E-19 1.8E-23 156.7 14.2 181 207-407 9-198 (218)
188 2gi7_A GPVI protein; IG-like d 99.8 4.3E-19 1.5E-23 153.2 13.1 149 113-291 18-168 (184)
189 3sbw_C Programmed cell death 1 99.8 1.3E-18 4.6E-23 155.2 16.7 181 109-303 8-211 (222)
190 1oll_A NK receptor; immune sys 99.8 1.4E-18 5E-23 150.4 16.3 178 207-405 4-186 (188)
191 2fbo_J V1V2;, variable region- 99.8 7.4E-19 2.5E-23 160.1 15.1 173 110-292 10-238 (250)
192 4frw_A Poliovirus receptor-rel 99.8 1.1E-18 3.7E-23 155.2 15.6 182 111-303 8-211 (218)
193 1hng_A CD2; T lymphocyte adhes 99.8 1.6E-19 5.5E-24 154.3 9.7 154 112-300 6-173 (176)
194 1jbj_A CD3 epsilon and gamma e 99.8 2.2E-19 7.4E-24 155.2 10.3 151 113-293 10-179 (186)
195 1jbj_A CD3 epsilon and gamma e 99.8 4.2E-19 1.4E-23 153.4 12.1 149 220-397 12-179 (186)
196 3ry4_A Low affinity immunoglob 99.8 1.1E-18 3.7E-23 148.7 14.5 153 112-301 14-169 (170)
197 1b6u_A KIR2DL3, P58 killer cel 99.8 7.2E-19 2.5E-23 159.4 14.0 224 207-493 7-241 (257)
198 3s96_B 3B5H10 FAB light chain; 99.8 1.8E-18 6.1E-23 153.9 16.1 184 210-401 4-214 (218)
199 3mj8_L Stimulatory hamster ant 99.8 3.9E-19 1.3E-23 157.6 11.6 178 111-296 9-206 (213)
200 3mj6_A Junctional adhesion mol 99.8 9.3E-19 3.2E-23 161.2 14.3 189 209-407 7-237 (268)
201 1mq8_A ICAM-1, intercellular a 99.8 4.7E-19 1.6E-23 162.2 12.2 250 214-535 6-282 (291)
202 2pet_A Lutheran blood group gl 99.8 1.8E-18 6.1E-23 155.5 15.7 186 213-405 6-229 (231)
203 3tv3_L PGT128 light chain, IG 99.8 1E-18 3.6E-23 154.6 14.0 182 211-402 5-206 (211)
204 3nl4_L Antigen binding fragmen 99.8 1.5E-18 5E-23 153.9 14.9 174 210-391 4-198 (213)
205 3d9a_L Light chain of hyhel10 99.8 1.1E-18 3.8E-23 154.7 13.4 174 111-293 10-203 (213)
206 3d9a_L Light chain of hyhel10 99.8 1.3E-18 4.4E-23 154.2 13.7 180 211-398 5-204 (213)
207 2pet_A Lutheran blood group gl 99.8 2.1E-18 7.1E-23 155.0 15.1 172 111-289 9-211 (231)
208 1b6u_A KIR2DL3, P58 killer cel 99.8 3.4E-18 1.2E-22 155.0 16.4 214 112-349 16-240 (257)
209 4i0k_A CD276 antigen; immunogl 99.8 5.1E-19 1.7E-23 158.0 10.2 185 110-304 3-207 (222)
210 3nl4_L Antigen binding fragmen 99.8 1.9E-18 6.4E-23 153.2 13.4 168 111-287 10-198 (213)
211 1q0x_L FAB 9B1, light chain; a 99.8 5.1E-18 1.8E-22 150.2 16.0 181 214-401 7-209 (212)
212 1uct_A Immunoglobulin alpha FC 99.8 8.2E-19 2.8E-23 155.5 10.7 172 112-303 18-198 (218)
213 1lk3_L 9D7 light chain; antige 99.8 3.6E-18 1.2E-22 151.0 14.5 174 111-293 9-202 (210)
214 3mj6_A Junctional adhesion mol 99.8 1.4E-18 4.7E-23 160.1 12.3 198 110-328 13-256 (268)
215 1lk3_L 9D7 light chain; antige 99.8 4.4E-18 1.5E-22 150.4 14.5 176 214-397 7-202 (210)
216 1oll_A NK receptor; immune sys 99.8 5E-18 1.7E-22 147.0 14.6 168 113-301 14-186 (188)
217 1nkr_A P58-CL42 KIR; inhibitor 99.8 1.9E-17 6.5E-22 145.1 18.2 172 207-394 8-184 (201)
218 4i0k_A CD276 antigen; immunogl 99.8 8.6E-19 2.9E-23 156.5 9.7 184 216-407 4-206 (222)
219 2if7_A SLAM family member 6; N 99.8 1.8E-17 6.3E-22 144.0 17.2 163 213-401 4-186 (193)
220 1q0x_L FAB 9B1, light chain; a 99.8 6.6E-18 2.3E-22 149.5 14.6 174 111-292 9-204 (212)
221 1c1e_H Catalytic antibody 1E9 99.8 5.2E-18 1.8E-22 151.0 14.0 182 214-403 7-216 (219)
222 1c1e_H Catalytic antibody 1E9 99.8 5.5E-18 1.9E-22 150.8 14.1 178 111-296 9-213 (219)
223 2if7_A SLAM family member 6; N 99.8 9.6E-18 3.3E-22 145.7 14.9 157 111-296 7-185 (193)
224 3tv3_L PGT128 light chain, IG 99.8 2.1E-18 7.3E-23 152.6 10.4 175 111-295 9-203 (211)
225 1dr9_A B7-1 (CD80), T lymphocy 99.8 1.8E-17 6.3E-22 145.3 16.0 162 7-195 13-197 (201)
226 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 7E-18 2.4E-22 150.5 13.4 180 216-403 9-219 (222)
227 1p6f_A NKP46, natural cytotoxi 99.8 2.7E-17 9.1E-22 147.9 17.1 180 207-407 7-191 (242)
228 3qib_D 2B4 beta chain; IG doma 99.8 1.5E-18 5.2E-23 159.8 9.1 210 63-293 3-245 (270)
229 3s96_B 3B5H10 FAB light chain; 99.8 7E-18 2.4E-22 150.1 12.9 176 111-294 9-211 (218)
230 1sy6_A T-cell surface glycopro 99.7 2.5E-18 8.6E-23 150.7 9.8 161 219-405 15-202 (204)
231 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 1.1E-17 3.8E-22 149.2 14.0 179 111-297 9-217 (222)
232 3pv7_A B7-H6, IG-like domain-c 99.7 1E-17 3.4E-22 152.3 14.0 181 111-301 12-224 (248)
233 3r06_A Anti-mouse CD3epsilon a 99.7 9.8E-18 3.4E-22 148.5 13.6 180 210-397 4-203 (213)
234 3pv7_A B7-H6, IG-like domain-c 99.7 9.7E-18 3.3E-22 152.4 13.5 185 213-405 9-224 (248)
235 1f3r_B FV antibody fragment; I 99.7 3.6E-17 1.2E-21 149.4 17.3 172 112-290 10-232 (257)
236 1nkr_A P58-CL42 KIR; inhibitor 99.7 5.5E-17 1.9E-21 142.1 17.7 162 112-289 17-183 (201)
237 1dr9_A B7-1 (CD80), T lymphocy 99.7 2.8E-17 9.7E-22 144.1 15.9 172 111-298 3-196 (201)
238 2ghw_B Anti-SARS SCFV antibody 99.7 6.3E-17 2.1E-21 146.9 18.7 185 111-302 11-241 (247)
239 2ghw_B Anti-SARS SCFV antibody 99.7 4.9E-17 1.7E-21 147.6 17.9 186 215-406 10-241 (247)
240 3d9a_H Heavy chain of hyhel10 99.7 1.1E-17 3.6E-22 147.9 12.9 174 112-294 10-205 (210)
241 1nqb_A Single-chain antibody f 99.7 8.1E-17 2.8E-21 146.8 19.1 181 214-407 7-233 (256)
242 3sob_L Antibody light chain; b 99.7 2.4E-17 8.3E-22 148.7 14.7 184 209-400 26-229 (237)
243 2xzc_L FAB A.17 light chain; i 99.7 1.9E-17 6.4E-22 147.0 13.7 175 111-294 9-206 (216)
244 3sob_L Antibody light chain; b 99.7 9.7E-18 3.3E-22 151.3 11.8 175 111-294 33-227 (237)
245 2p1y_A Bispecific alpha/beta T 99.7 7.2E-17 2.5E-21 145.6 17.3 178 211-394 4-222 (238)
246 1f3r_B FV antibody fragment; I 99.7 3.5E-17 1.2E-21 149.5 15.1 173 216-394 9-232 (257)
247 1nqb_A Single-chain antibody f 99.7 1.3E-16 4.4E-21 145.4 18.8 178 111-302 9-232 (256)
248 2zg1_A Sialic acid-binding IG- 99.7 3.7E-17 1.3E-21 144.9 14.7 169 111-299 9-209 (214)
249 3qib_D 2B4 beta chain; IG doma 99.7 2.7E-17 9.3E-22 151.4 14.3 209 171-397 4-245 (270)
250 1nfd_E H57 FAB; complex (immun 99.7 1.3E-18 4.6E-23 154.0 5.2 178 214-398 6-203 (212)
251 3d9a_H Heavy chain of hyhel10 99.7 1.9E-17 6.5E-22 146.3 12.6 178 214-400 7-207 (210)
252 2xzc_L FAB A.17 light chain; i 99.7 3.4E-17 1.1E-21 145.4 14.2 177 214-398 7-206 (216)
253 1p6f_A NKP46, natural cytotoxi 99.7 5.8E-17 2E-21 145.8 15.7 171 113-304 17-192 (242)
254 3auv_A SC-DSFV derived from th 99.7 1.4E-16 4.7E-21 147.1 18.6 181 207-393 12-235 (276)
255 1gsm_A Madcam-1, mucosal addre 99.7 2E-16 7E-21 136.4 18.1 160 112-291 17-193 (210)
256 3juy_B 3B3 single chain varian 99.7 1.8E-16 6.1E-21 144.7 18.9 183 207-395 6-244 (256)
257 4dzb_B Vbeta2 (MAIT T cell rec 99.7 1.5E-17 5E-22 151.0 11.6 184 211-398 5-222 (246)
258 1moe_A Anti-CEA MAB T84.66; an 99.7 1E-16 3.4E-21 144.9 16.6 176 210-392 4-219 (240)
259 2rgs_A I, IG gamma-2B heavy ch 99.7 6.3E-18 2.2E-22 150.1 8.5 175 114-292 23-205 (218)
260 3esu_F Antibody 14B7* light ch 99.7 1.1E-16 3.7E-21 145.6 16.9 179 208-392 5-231 (250)
261 1sy6_A T-cell surface glycopro 99.7 5.3E-18 1.8E-22 148.6 7.9 162 113-301 14-202 (204)
262 2zg1_A Sialic acid-binding IG- 99.7 2.2E-17 7.5E-22 146.4 11.7 174 213-405 6-213 (214)
263 3uzq_A Anti-dengue MAB 4E11; d 99.7 9.3E-17 3.2E-21 146.3 16.1 190 212-407 6-244 (253)
264 1dee_B IGM RF 2A2; FAB-IBP com 99.7 2.5E-16 8.4E-21 140.4 18.5 179 111-295 9-219 (223)
265 2rgs_A I, IG gamma-2B heavy ch 99.7 6.9E-18 2.4E-22 149.9 8.3 186 207-396 9-205 (218)
266 2vol_A Murine IGG FC; FC, zinc 99.7 1.3E-17 4.5E-22 146.8 9.8 175 114-292 15-197 (207)
267 2fbj_H IGA-kappa J539 FAB (hea 99.7 1.5E-16 5E-21 141.5 16.5 175 111-294 9-212 (220)
268 3umt_A SCFV heavy chain and li 99.7 1.1E-16 3.7E-21 146.1 16.0 186 216-407 11-245 (256)
269 2vol_A Murine IGG FC; FC, zinc 99.7 9.7E-18 3.3E-22 147.6 8.6 174 219-395 15-196 (207)
270 1nfd_E H57 FAB; complex (immun 99.7 2.7E-18 9.3E-23 152.0 5.1 175 111-293 8-202 (212)
271 4fmk_A Poliovirus receptor-rel 99.7 4.6E-17 1.6E-21 145.3 13.0 182 112-301 11-215 (225)
272 4dzb_B Vbeta2 (MAIT T cell rec 99.7 2.4E-17 8.3E-22 149.5 11.3 178 111-293 10-221 (246)
273 3eow_R Poliovirus receptor; im 99.7 1.1E-17 3.6E-22 149.2 8.6 180 111-299 8-208 (221)
274 3uzq_A Anti-dengue MAB 4E11; d 99.7 1.2E-16 4.1E-21 145.6 15.7 186 111-303 10-244 (253)
275 1pz5_B Heavy chain of FAB (SYA 99.7 2.9E-17 9.8E-22 146.3 11.3 179 214-402 7-216 (220)
276 1hnf_A CD2; T lymphocyte adhes 99.7 5.6E-17 1.9E-21 138.6 12.6 154 111-299 8-177 (182)
277 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 1.8E-16 6.2E-21 144.6 16.8 183 208-396 4-235 (256)
278 1mju_H Immunoglobulin MS6-12; 99.7 9.6E-17 3.3E-21 143.4 14.6 186 214-407 7-217 (227)
279 3bkj_L WO2 IGG2A FAB fragment 99.7 4.5E-17 1.5E-21 148.3 12.5 173 111-292 43-240 (252)
280 2j6e_L IGM, FAB light chain; a 99.7 1.6E-17 5.5E-22 149.5 9.3 177 111-295 28-227 (234)
281 1op3_H FAB 2G12, heavy chain; 99.7 5.5E-17 1.9E-21 144.9 12.7 175 111-292 9-214 (225)
282 1pz5_B Heavy chain of FAB (SYA 99.7 7.5E-17 2.6E-21 143.6 13.6 177 111-297 9-215 (220)
283 3bae_H WO2 IGG2A FAB fragment 99.7 1E-16 3.4E-21 143.5 14.4 178 111-296 9-219 (228)
284 3r06_A Anti-mouse CD3epsilon a 99.7 7.9E-17 2.7E-21 142.7 13.5 164 313-523 3-202 (213)
285 1mju_H Immunoglobulin MS6-12; 99.7 6.4E-17 2.2E-21 144.6 12.9 182 111-300 9-214 (227)
286 2p1y_A Bispecific alpha/beta T 99.7 2.3E-16 8E-21 142.3 16.8 173 111-290 9-222 (238)
287 4fmk_A Poliovirus receptor-rel 99.7 4.3E-17 1.5E-21 145.5 11.8 183 214-405 8-215 (225)
288 3bkj_L WO2 IGG2A FAB fragment 99.7 4.3E-17 1.5E-21 148.4 11.9 181 209-397 36-241 (252)
289 3umt_A SCFV heavy chain and li 99.7 3.7E-16 1.3E-20 142.6 18.1 186 111-303 11-245 (256)
290 2znx_A SCFV; fluorotryptohpan, 99.7 4.2E-16 1.4E-20 140.8 18.2 178 210-393 4-222 (242)
291 1hnf_A CD2; T lymphocyte adhes 99.7 1E-16 3.5E-21 136.9 13.3 133 24-195 31-177 (182)
292 2j6e_L IGM, FAB light chain; a 99.7 1.1E-17 3.6E-22 150.7 7.5 181 214-401 26-229 (234)
293 3gkz_A Anti-methamphetamine si 99.7 7.4E-16 2.5E-20 140.7 19.8 186 111-303 17-249 (257)
294 1dee_B IGM RF 2A2; FAB-IBP com 99.7 3E-16 1E-20 139.9 16.6 181 215-401 8-221 (223)
295 1dn0_B IGM-kappa cold agglutin 99.7 3.4E-16 1.1E-20 140.3 16.8 186 111-302 9-226 (232)
296 1qok_A MFE-23 recombinant anti 99.7 3.1E-16 1.1E-20 145.2 17.0 188 213-407 32-268 (282)
297 3juy_B 3B3 single chain varian 99.7 4.8E-16 1.6E-20 141.8 17.6 174 110-290 14-243 (256)
298 3esu_F Antibody 14B7* light ch 99.7 3.9E-16 1.3E-20 141.9 16.9 171 111-288 13-231 (250)
299 2fbj_H IGA-kappa J539 FAB (hea 99.7 1.5E-16 5.1E-21 141.5 13.5 177 215-398 8-212 (220)
300 3bae_H WO2 IGG2A FAB fragment 99.7 2.5E-16 8.7E-21 140.9 15.1 181 215-403 8-222 (228)
301 1op3_H FAB 2G12, heavy chain; 99.7 1E-16 3.6E-21 143.1 12.3 175 216-398 9-216 (225)
302 1gsm_A Madcam-1, mucosal addre 99.7 9.2E-16 3.2E-20 132.3 17.6 163 217-399 17-197 (210)
303 1qok_A MFE-23 recombinant anti 99.7 5.4E-16 1.8E-20 143.6 17.3 185 111-303 35-268 (282)
304 1ccz_A Protein (CD58); LFA-3, 99.7 2.2E-16 7.4E-21 133.9 13.1 155 216-404 4-168 (171)
305 3ux9_B SCFV antibody; five hel 99.7 4.8E-16 1.7E-20 141.8 16.5 175 213-394 8-236 (256)
306 3gkz_A Anti-methamphetamine si 99.7 8.6E-16 3E-20 140.2 18.1 176 213-394 14-235 (257)
307 1ccz_A Protein (CD58); LFA-3, 99.7 1.3E-16 4.5E-21 135.2 11.7 157 112-298 5-166 (171)
308 1moe_A Anti-CEA MAB T84.66; an 99.7 4.6E-16 1.6E-20 140.5 15.7 171 111-289 10-220 (240)
309 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 8.3E-16 2.8E-20 140.2 17.5 175 111-292 12-235 (256)
310 2v5y_A Receptor-type tyrosine- 99.7 2.3E-13 7.8E-18 143.5 38.6 337 8-406 96-456 (731)
311 3q5y_A TCR N15 beta; IG, T cel 99.7 5.6E-16 1.9E-20 139.9 16.0 182 210-396 5-213 (240)
312 3bqu_C 3H6 FAB light chain; be 99.7 9.2E-18 3.2E-22 151.0 3.9 172 111-291 32-223 (233)
313 1svz_A Immunoglobulin;, single 99.7 1.8E-15 6.3E-20 137.2 19.1 177 211-393 5-228 (247)
314 1dn0_B IGM-kappa cold agglutin 99.7 6E-16 2.1E-20 138.7 15.7 186 215-407 8-227 (232)
315 3eow_R Poliovirus receptor; im 99.7 5.4E-17 1.8E-21 144.6 8.7 183 214-405 6-210 (221)
316 4ei6_B Vbeta16 XV19 type II na 99.7 2.5E-16 8.7E-21 142.7 13.3 183 209-396 4-219 (245)
317 3bqu_C 3H6 FAB light chain; be 99.7 9.3E-18 3.2E-22 151.0 3.5 180 209-396 25-224 (233)
318 2w59_A IGY FCU3-4; immunoglobu 99.7 5.6E-17 1.9E-21 145.3 8.2 181 212-396 18-217 (231)
319 3knb_A Titin; IG-like, titin, 99.7 6.5E-16 2.2E-20 117.7 12.9 95 311-407 5-99 (100)
320 3liz_H 4C3 monoclonal antibody 99.7 4.4E-16 1.5E-20 141.7 14.2 184 111-302 9-219 (253)
321 3auv_A SC-DSFV derived from th 99.7 1E-15 3.4E-20 141.3 16.7 172 111-289 21-235 (276)
322 4acp_A IG gamma-1 chain C regi 99.7 5.9E-17 2E-21 145.0 8.0 208 176-395 1-217 (240)
323 2gjj_A A21 single-chain antibo 99.7 1.7E-15 5.7E-20 138.7 17.9 181 207-393 5-239 (264)
324 1l6x_A Immunoglobulin gamma-1 99.7 6.7E-17 2.3E-21 142.3 7.9 173 220-396 16-197 (207)
325 2xqy_G A13-D6.3 monoclonal ant 99.7 6.9E-16 2.4E-20 140.6 14.7 174 111-292 15-214 (261)
326 3omz_A Human vdelta1 gamma del 99.7 1.9E-16 6.4E-21 144.8 10.9 182 208-393 3-231 (259)
327 2dru_A Chimera of CD48 antigen 99.7 4.1E-16 1.4E-20 133.4 12.2 152 110-297 7-175 (180)
328 3m8o_H Immunoglobulin A1 heavy 99.7 1E-15 3.5E-20 136.2 15.3 174 111-292 9-212 (221)
329 3knb_B Obscurin-like protein 1 99.7 5.4E-16 1.8E-20 119.6 11.6 94 310-407 12-105 (107)
330 2znx_A SCFV; fluorotryptohpan, 99.7 7.6E-16 2.6E-20 139.1 14.6 172 111-289 10-222 (242)
331 1i1c_A IGG2A, IG gamma-2A chai 99.7 8.8E-17 3E-21 144.4 8.1 175 219-396 29-211 (239)
332 1i1c_A IGG2A, IG gamma-2A chai 99.7 9.7E-17 3.3E-21 144.2 8.3 175 114-292 29-211 (239)
333 3ux9_B SCFV antibody; five hel 99.7 2.1E-15 7.3E-20 137.6 17.2 172 111-290 11-236 (256)
334 1hxm_B Gamma-delta T-cell rece 99.7 1.8E-15 6E-20 136.7 16.4 186 111-301 10-227 (242)
335 3shs_A HOC head outer capsid p 99.7 4.4E-14 1.5E-18 122.3 23.9 159 214-406 9-182 (304)
336 1l6x_A Immunoglobulin gamma-1 99.7 1.3E-16 4.6E-21 140.3 8.6 175 114-292 15-197 (207)
337 3pl6_D MBP peptide / T-cell re 99.7 3.3E-16 1.1E-20 144.0 11.6 184 208-396 27-241 (268)
338 3q5y_A TCR N15 beta; IG, T cel 99.7 6.9E-16 2.4E-20 139.3 13.4 176 111-292 11-213 (240)
339 2xqy_G A13-D6.3 monoclonal ant 99.7 1.7E-15 5.7E-20 138.1 15.9 178 214-399 13-217 (261)
340 3nfj_J T cell receptor beta ch 99.7 4.3E-16 1.5E-20 141.1 11.8 179 111-294 10-221 (245)
341 4acp_A IG gamma-1 chain C regi 99.7 1.8E-16 6.3E-21 141.8 9.1 174 114-291 36-217 (240)
342 1svz_A Immunoglobulin;, single 99.7 1.2E-15 4.2E-20 138.3 14.7 169 7-185 20-228 (247)
343 4ei6_B Vbeta16 XV19 type II na 99.7 4.3E-16 1.5E-20 141.1 11.6 176 111-292 11-219 (245)
344 1x9q_A SCFV, 4M5.3 anti-fluore 99.7 2.1E-15 7.3E-20 138.5 16.4 181 207-393 15-254 (268)
345 3bn9_D E2 FAB heavy chain; ant 99.7 4.9E-16 1.7E-20 141.0 11.8 175 111-292 9-219 (257)
346 3nfj_J T cell receptor beta ch 99.7 5.1E-16 1.8E-20 140.7 11.9 184 211-398 5-221 (245)
347 2w59_A IGY FCU3-4; immunoglobu 99.7 3E-16 1E-20 140.5 10.2 176 112-292 23-217 (231)
348 2dru_A Chimera of CD48 antigen 99.7 1.5E-15 5.1E-20 129.9 14.1 156 215-403 7-177 (180)
349 1hxm_B Gamma-delta T-cell rece 99.7 2.3E-15 8E-20 135.9 15.9 191 210-405 4-227 (242)
350 3m8o_H Immunoglobulin A1 heavy 99.6 1.1E-15 3.6E-20 136.2 12.9 175 215-397 8-213 (221)
351 1c5d_H Monoclonal antibody aga 99.6 1.4E-15 4.8E-20 134.7 12.8 175 111-295 9-208 (215)
352 3mtr_A N-CAM-1, NCAM-1, neural 99.6 8.6E-16 2.9E-20 136.1 11.3 184 206-407 18-209 (215)
353 3liz_H 4C3 monoclonal antibody 99.6 1.7E-15 5.8E-20 137.8 13.5 184 215-406 8-219 (253)
354 3pl6_D MBP peptide / T-cell re 99.6 5.3E-16 1.8E-20 142.6 10.2 176 111-292 35-241 (268)
355 3shs_A HOC head outer capsid p 99.6 2.2E-13 7.5E-18 118.0 25.4 236 113-393 13-280 (304)
356 3bn9_D E2 FAB heavy chain; ant 99.6 1.1E-15 3.8E-20 138.6 11.9 181 216-403 9-226 (257)
357 2gjj_A A21 single-chain antibo 99.6 3.1E-15 1.1E-19 136.8 15.0 170 7-185 24-239 (264)
358 3nl4_H Antigen binding fragmen 99.6 1.6E-15 5.6E-20 134.3 12.5 174 111-298 8-209 (215)
359 1c5d_H Monoclonal antibody aga 99.6 3E-15 1E-19 132.5 14.0 177 214-401 7-210 (215)
360 2gki_A Nuclease; anti-DNA anti 99.6 3E-15 1E-19 139.1 14.5 173 111-290 31-258 (291)
361 2gki_A Nuclease; anti-DNA anti 99.6 3.2E-15 1.1E-19 138.9 14.6 176 214-395 29-259 (291)
362 2v5y_A Receptor-type tyrosine- 99.6 5.7E-14 1.9E-18 148.2 25.4 249 117-406 91-353 (731)
363 3nl4_H Antigen binding fragmen 99.6 2.7E-15 9.1E-20 132.9 11.9 179 214-404 6-211 (215)
364 3o3u_N Maltose-binding peripla 99.6 3.8E-15 1.3E-19 153.1 14.1 168 112-292 376-566 (581)
365 3fku_X Neutralizing antibody F 99.6 5.7E-15 1.9E-19 136.4 13.3 187 214-407 7-250 (280)
366 3mtr_A N-CAM-1, NCAM-1, neural 99.6 9.5E-15 3.2E-19 129.4 14.2 173 112-302 28-208 (215)
367 3tv3_H PGT128 heavy chain, IG 99.6 7.1E-15 2.4E-19 132.3 13.4 183 111-300 9-234 (239)
368 3omz_A Human vdelta1 gamma del 99.6 1.9E-15 6.4E-20 138.1 9.7 150 312-492 3-175 (259)
369 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 9.3E-15 3.2E-19 134.2 14.1 172 111-289 24-254 (268)
370 3to4_D NKT vbeta2 (mouse varia 99.6 4E-15 1.4E-19 135.4 11.2 179 213-395 7-218 (253)
371 3qhz_H Human monoclonal antibo 99.6 9.1E-15 3.1E-19 131.1 13.4 183 111-300 9-226 (232)
372 3fku_X Neutralizing antibody F 99.6 2.4E-14 8.3E-19 132.2 16.4 172 111-290 9-234 (280)
373 2wbj_D OB TCR; transmembrane, 99.6 3.3E-15 1.1E-19 138.0 10.6 187 207-397 24-246 (279)
374 2aty_A Complement receptor chi 99.6 1.1E-14 3.9E-19 140.3 14.3 175 114-291 180-361 (376)
375 1bec_A 14.3.D T cell antigen r 99.6 8.3E-15 2.8E-19 131.9 12.2 178 213-395 5-211 (238)
376 3u2s_H PG9 heavy chain; greek 99.6 7.7E-15 2.6E-19 132.6 11.9 183 111-300 8-235 (248)
377 3o3u_N Maltose-binding peripla 99.6 1.3E-14 4.3E-19 149.2 14.7 168 216-396 375-566 (581)
378 3qhz_H Human monoclonal antibo 99.6 3E-15 1E-19 134.3 8.6 183 216-405 9-227 (232)
379 2wbj_D OB TCR; transmembrane, 99.6 3.3E-15 1.1E-19 138.0 8.6 178 111-293 33-246 (279)
380 3tv3_H PGT128 heavy chain, IG 99.6 5.1E-15 1.7E-19 133.3 9.5 185 215-406 8-236 (239)
381 1g1c_A Immunoglobulin-like dom 99.6 5.7E-14 2E-18 107.1 14.1 95 310-407 4-98 (99)
382 3knb_A Titin; IG-like, titin, 99.6 1.4E-14 4.6E-19 110.3 10.3 97 205-303 3-99 (100)
383 2aty_A Complement receptor chi 99.6 2.3E-14 8E-19 138.1 14.6 174 219-395 180-361 (376)
384 1bec_A 14.3.D T cell antigen r 99.6 1.6E-14 5.6E-19 130.0 12.3 175 111-291 8-211 (238)
385 1ypz_F T-cell receptor gamma c 99.6 1.8E-14 6E-19 128.9 12.5 177 111-293 10-217 (230)
386 3to4_D NKT vbeta2 (mouse varia 99.6 3.6E-15 1.2E-19 135.6 8.1 174 111-291 10-218 (253)
387 1ypz_F T-cell receptor gamma c 99.6 1.2E-14 4.1E-19 130.0 10.7 181 211-397 5-217 (230)
388 3n9g_H FAB fragment of MAB CR4 99.5 6.9E-14 2.3E-18 125.1 14.9 182 111-301 9-223 (230)
389 3u2s_H PG9 heavy chain; greek 99.5 1.5E-14 5.1E-19 130.7 10.2 186 214-406 6-237 (248)
390 3n9g_H FAB fragment of MAB CR4 99.5 5.7E-14 1.9E-18 125.7 13.6 183 216-406 9-224 (230)
391 3knb_B Obscurin-like protein 1 99.5 1.9E-14 6.7E-19 110.8 8.7 94 206-303 12-105 (107)
392 1ow0_A IG alpha-1 chain C regi 99.5 1E-15 3.5E-20 135.3 1.3 180 211-396 8-200 (214)
393 3iu4_H CHP3 FAB heavy chain; a 99.5 5.9E-14 2E-18 127.9 12.4 178 111-297 9-218 (263)
394 1oga_E TRBC1, T-cell receptor 99.5 3.3E-14 1.1E-18 129.1 10.0 184 209-397 5-219 (252)
395 3qp3_A Titin; I-SET IG-like, s 99.5 2.7E-13 9.1E-18 104.2 13.0 93 311-407 8-100 (103)
396 3iu4_H CHP3 FAB heavy chain; a 99.5 2.7E-14 9.2E-19 130.2 8.5 181 216-404 9-221 (263)
397 3puc_A Titin; I-SET IG-like do 99.5 3.1E-13 1.1E-17 103.0 13.0 93 311-407 6-98 (99)
398 2cqv_A MLCK, myosin light chai 99.5 1.7E-13 5.8E-18 107.5 11.7 94 310-407 6-99 (114)
399 1oga_E TRBC1, T-cell receptor 99.5 1.1E-13 3.8E-18 125.6 12.0 167 314-524 6-219 (252)
400 3mlr_H Human monoclonal anti-H 99.5 1.9E-13 6.6E-18 121.7 13.3 175 111-294 9-217 (226)
401 3sob_H Antibody heavy chain, l 99.5 3.2E-13 1.1E-17 122.9 14.7 181 112-301 33-249 (256)
402 1u2h_A APEG-1, aortic preferen 99.5 4.1E-13 1.4E-17 102.3 13.1 94 311-407 5-98 (99)
403 2kdg_A Myotilin; immonoglobuli 99.5 1.7E-13 5.7E-18 104.7 10.8 94 311-407 5-98 (100)
404 1wit_A Twitchin 18TH IGSF modu 99.5 1.8E-13 6.1E-18 102.9 9.6 89 311-405 2-92 (93)
405 1ow0_A IG alpha-1 chain C regi 99.5 1.5E-15 5.2E-20 134.3 -2.4 140 313-497 6-152 (214)
406 3irg_A Titin; IG-like, titin, 99.5 7.2E-13 2.4E-17 101.2 12.9 95 311-407 5-99 (100)
407 3mlr_H Human monoclonal anti-H 99.5 1.8E-13 6.1E-18 121.9 10.8 179 216-402 9-221 (226)
408 1fhg_A Telokin; immunoglobulin 99.5 6.2E-13 2.1E-17 110.4 13.2 94 311-407 41-134 (154)
409 3sob_H Antibody heavy chain, l 99.5 3.1E-13 1.1E-17 123.0 12.3 184 216-407 32-251 (256)
410 3irg_B Obscurin-like protein 1 99.5 6.3E-13 2.2E-17 102.9 11.7 93 311-407 13-105 (107)
411 2cqv_A MLCK, myosin light chai 99.4 1.1E-12 3.8E-17 102.7 12.6 99 206-308 6-104 (114)
412 1iam_A ICAM-1, CD54, intercell 99.4 4.4E-12 1.5E-16 106.8 16.6 154 112-292 9-167 (185)
413 2eo9_A Roundabout homolog 1; b 99.4 2.4E-13 8.1E-18 107.4 8.3 91 310-407 7-98 (118)
414 2kkq_A Myotilin; unknown funct 99.4 8E-13 2.7E-17 103.7 11.0 94 311-407 15-109 (116)
415 2dm3_A KIAA0992 protein, palla 99.4 4.1E-13 1.4E-17 104.5 9.0 96 309-407 7-102 (110)
416 2bk8_A Connectin, M1, titin he 99.4 2.8E-12 9.6E-17 97.1 13.4 89 315-407 5-94 (97)
417 1he7_A High affinity nerve gro 99.4 1.4E-12 4.8E-17 101.9 11.7 84 324-407 13-99 (126)
418 1wwb_X Protein (brain derived 99.4 1.9E-12 6.5E-17 99.1 12.3 84 324-407 14-98 (103)
419 1nct_A Titin; cell adhesion, g 99.4 2.3E-13 7.9E-18 104.9 7.0 94 309-406 12-105 (106)
420 2edj_A Roundabout homolog 2; K 99.4 8.6E-13 2.9E-17 100.7 9.9 91 310-407 7-98 (100)
421 2yuz_A Myosin-binding protein 99.4 6E-13 2.1E-17 101.1 8.5 89 311-407 7-95 (100)
422 1wwb_X Protein (brain derived 99.4 5.3E-12 1.8E-16 96.6 13.9 85 115-199 14-98 (103)
423 1ypz_E T cell receptor delta, 99.4 4.4E-12 1.5E-16 111.1 15.1 171 211-398 5-200 (207)
424 1iam_A ICAM-1, CD54, intercell 99.4 1.1E-11 3.8E-16 104.4 16.6 157 214-395 6-166 (185)
425 1waa_A Titin; metal binding pr 99.4 2.7E-12 9.3E-17 95.8 11.2 88 311-407 5-92 (93)
426 3f8u_B Tapasin; endoplasmic re 99.4 2.5E-11 8.7E-16 114.1 20.3 173 111-290 167-388 (401)
427 1g1c_A Immunoglobulin-like dom 99.4 1.9E-12 6.5E-17 98.6 10.5 94 207-303 5-98 (99)
428 2e7c_A Myosin-binding protein 99.4 2.5E-12 8.6E-17 101.4 11.4 85 318-407 31-115 (118)
429 2ckn_A Basic fibroblast growth 99.4 1.8E-12 6E-17 97.8 10.0 86 311-405 9-94 (95)
430 2dm2_A Palladin; beta-sandwich 99.4 9.1E-13 3.1E-17 102.5 8.7 95 310-407 7-102 (110)
431 3cx2_A Myosin-binding protein 99.4 5.9E-12 2E-16 97.4 13.2 96 311-406 4-107 (108)
432 2dav_A SLOW MYBP-C, myosin-bin 99.4 3.5E-12 1.2E-16 99.7 11.8 97 311-407 7-111 (126)
433 3kvq_A Vascular endothelial gr 99.4 5.1E-13 1.7E-17 103.7 6.9 92 311-408 10-101 (108)
434 1he7_A High affinity nerve gro 99.4 6.5E-12 2.2E-16 98.1 12.9 86 116-201 14-101 (126)
435 2kdg_A Myotilin; immonoglobuli 99.4 2.4E-12 8.2E-17 98.2 10.1 94 207-303 5-98 (100)
436 2yr3_A Myosin light chain kina 99.4 2E-12 6.7E-17 98.4 9.4 88 311-405 11-98 (99)
437 1ypz_E T cell receptor delta, 99.4 1.3E-11 4.4E-16 108.1 15.2 157 315-523 5-198 (207)
438 3bfo_A Mucosa-associated lymph 99.4 8.2E-12 2.8E-16 93.2 11.7 84 311-407 3-87 (91)
439 2dav_A SLOW MYBP-C, myosin-bin 99.4 1.9E-11 6.6E-16 95.5 14.2 89 111-199 16-111 (126)
440 3qp3_A Titin; I-SET IG-like, s 99.4 4.5E-12 1.5E-16 97.3 10.4 93 207-303 8-100 (103)
441 3caf_A Fibroblast growth facto 99.4 2E-12 6.7E-17 98.7 8.3 83 319-405 16-99 (100)
442 3u1s_H FAB PGT145 heavy chain; 99.4 2.8E-12 9.4E-17 117.3 10.6 179 111-298 32-260 (267)
443 2bk8_A Connectin, M1, titin he 99.3 8.8E-12 3E-16 94.4 11.6 85 110-199 9-94 (97)
444 1wwc_A Protein (NT-3 growth fa 99.3 6.1E-12 2.1E-16 99.2 11.1 82 326-407 20-101 (118)
445 2kkq_A Myotilin; unknown funct 99.3 1.2E-11 4E-16 97.0 12.6 97 206-305 14-111 (116)
446 2eo9_A Roundabout homolog 1; b 99.3 3E-12 1E-16 101.0 9.2 93 206-305 7-100 (118)
447 2cry_A KIN of IRRE-like protei 99.3 1.8E-13 6.3E-18 108.7 2.2 96 311-407 14-113 (122)
448 2edn_A Myosin-binding protein 99.3 4.9E-12 1.7E-16 97.7 10.0 97 311-407 12-116 (118)
449 1u2h_A APEG-1, aortic preferen 99.3 4.6E-12 1.6E-16 96.4 9.7 93 207-302 5-97 (99)
450 1wit_A Twitchin 18TH IGSF modu 99.3 3.4E-12 1.2E-16 95.8 8.9 89 207-301 2-92 (93)
451 1gxe_A Myosin binding protein 99.3 2.1E-12 7E-17 104.2 8.1 85 318-406 25-138 (139)
452 3u1s_H FAB PGT145 heavy chain; 99.3 4.2E-12 1.4E-16 116.1 11.0 182 216-405 32-263 (267)
453 2e7c_A Myosin-binding protein 99.3 1.4E-11 4.7E-16 97.1 12.4 84 110-199 32-115 (118)
454 2dm2_A Palladin; beta-sandwich 99.3 8.9E-12 3.1E-16 96.8 11.1 97 206-305 7-104 (110)
455 3f8u_B Tapasin; endoplasmic re 99.3 4E-11 1.4E-15 112.8 16.9 173 215-394 166-388 (401)
456 3puc_A Titin; I-SET IG-like do 99.3 8.1E-12 2.8E-16 95.0 10.1 93 207-303 6-98 (99)
457 2lu7_A Obscurin-like protein 1 99.3 2.7E-12 9.2E-17 93.5 7.0 80 319-407 4-83 (84)
458 3irg_A Titin; IG-like, titin, 99.3 9.8E-12 3.3E-16 94.8 10.4 93 206-302 4-98 (100)
459 2dm3_A KIAA0992 protein, palla 99.3 3E-12 1E-16 99.6 7.5 98 205-305 7-104 (110)
460 3s35_X Vascular endothelial gr 99.3 1.7E-11 5.9E-16 97.3 11.9 88 319-407 16-110 (122)
461 2lu7_A Obscurin-like protein 1 99.3 4E-12 1.4E-16 92.6 7.4 68 8-92 16-83 (84)
462 3kvq_A Vascular endothelial gr 99.3 4E-12 1.4E-16 98.5 7.9 92 207-304 10-101 (108)
463 3bn3_B ICAM-5, intercellular a 99.3 2.5E-11 8.4E-16 103.0 13.1 164 317-537 8-196 (196)
464 2edj_A Roundabout homolog 2; K 99.3 1E-11 3.6E-16 94.6 9.8 91 206-303 7-98 (100)
465 1gxe_A Myosin binding protein 99.3 7.5E-12 2.5E-16 100.9 9.2 84 110-198 26-138 (139)
466 2lvc_A Obscurin-like protein 1 99.3 3.8E-12 1.3E-16 94.3 6.8 78 311-393 4-83 (91)
467 3bn3_B ICAM-5, intercellular a 99.3 3E-11 1E-15 102.5 12.9 160 111-291 11-174 (196)
468 1fhg_A Telokin; immunoglobulin 99.3 1.5E-11 5E-16 102.1 10.9 95 207-304 41-135 (154)
469 3cx2_A Myosin-binding protein 99.3 5.7E-11 1.9E-15 91.8 12.9 96 207-302 4-107 (108)
470 2yr3_A Myosin light chain kina 99.3 1.2E-11 4.2E-16 94.0 8.9 79 111-197 20-98 (99)
471 3caf_A Fibroblast growth facto 99.3 1.4E-11 4.8E-16 93.9 9.2 84 110-197 16-99 (100)
472 2yuz_A Myosin-binding protein 99.3 1.4E-11 4.9E-16 93.4 9.2 89 207-303 7-95 (100)
473 3irg_B Obscurin-like protein 1 99.3 1.2E-11 4E-16 95.6 8.9 93 207-303 13-105 (107)
474 1nct_A Titin; cell adhesion, g 99.3 4.6E-12 1.6E-16 97.5 6.3 93 206-302 13-105 (106)
475 1hxm_A Gamma-delta T-cell rece 99.3 7.5E-11 2.6E-15 104.6 14.7 163 111-291 10-198 (229)
476 2xot_A Amphoterin-induced prot 99.3 1E-11 3.5E-16 118.9 9.5 106 318-487 253-360 (361)
477 2ckn_A Basic fibroblast growth 99.3 1.6E-11 5.6E-16 92.4 8.6 86 207-301 9-94 (95)
478 1x44_A Myosin-binding protein 99.3 2.4E-11 8.3E-16 93.0 9.7 90 311-407 7-96 (103)
479 2cr6_A KIAA1556 protein, obscu 99.3 3.3E-12 1.1E-16 100.1 4.6 90 311-407 13-102 (115)
480 1waa_A Titin; metal binding pr 99.3 4.1E-11 1.4E-15 89.4 10.3 88 206-302 4-91 (93)
481 1hxm_A Gamma-delta T-cell rece 99.3 2.3E-10 8E-15 101.4 16.9 157 315-522 5-198 (229)
482 2dlt_A Myosin binding protein 99.2 1.4E-11 4.9E-16 94.9 8.0 91 310-407 7-97 (106)
483 2edf_A Obscurin; beta-sandwich 99.2 1.8E-11 6.1E-16 93.8 8.3 89 310-407 7-95 (103)
484 2v9t_A Roundabout homolog 1; s 99.2 1.3E-11 4.6E-16 97.0 7.6 97 311-407 9-109 (117)
485 2yuv_A Myosin-binding protein 99.2 4.6E-11 1.6E-15 90.9 10.4 88 311-407 7-95 (100)
486 1gl4_B Basement membrane-speci 99.2 7.2E-11 2.5E-15 89.4 11.1 81 317-406 16-97 (98)
487 2edk_A Myosin-binding protein 99.2 9.4E-12 3.2E-16 95.0 6.1 90 311-407 8-99 (101)
488 2e6p_A Obscurin-like protein 1 99.2 1.7E-11 5.8E-16 94.1 7.5 88 311-407 7-97 (104)
489 2edh_A Obscurin; structural ge 99.2 2.5E-11 8.6E-16 94.8 8.6 99 293-407 7-105 (113)
490 1wwc_A Protein (NT-3 growth fa 99.2 7.7E-11 2.6E-15 92.8 11.4 82 222-303 20-101 (118)
491 2cr3_A Basic fibroblast growth 99.2 3.4E-11 1.1E-15 91.4 8.9 79 111-199 12-90 (99)
492 2k1m_A Myosin-binding protein 99.2 3.6E-11 1.2E-15 90.4 9.0 87 311-406 8-94 (95)
493 2edn_A Myosin-binding protein 99.2 4.7E-11 1.6E-15 92.2 9.7 97 207-303 12-116 (118)
494 3s35_X Vascular endothelial gr 99.2 4.4E-11 1.5E-15 94.9 9.6 87 111-199 17-110 (122)
495 3bfo_A Mucosa-associated lymph 99.2 7.4E-11 2.5E-15 87.9 9.8 83 207-302 3-86 (91)
496 2ens_A Advanced glycosylation 99.2 1.2E-11 4.1E-16 93.4 5.4 82 311-405 10-93 (96)
497 2cpc_A KIAA0657 protein; immun 99.2 7E-11 2.4E-15 92.2 9.9 78 321-407 23-100 (113)
498 2eny_A Obscurin; beta-sandwich 99.2 2E-11 6.8E-16 93.5 6.2 89 311-407 8-97 (104)
499 1pd6_A Cardiac MYBP-C;, myosin 99.2 4.9E-11 1.7E-15 91.2 8.3 90 308-406 12-103 (104)
500 3so5_A LIG-3, leucine-rich rep 99.2 2.7E-10 9.2E-15 88.6 12.8 95 311-405 10-111 (112)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=3.8e-56 Score=457.02 Aligned_cols=428 Identities=22% Similarity=0.391 Sum_probs=345.1
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.+.|.+.|.|. +.|+|||||..+..+.++++..... .++|.|.+++.+|+|.|+|.|.|..|......
T Consensus 24 ~L~C~~~g~p~------~~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 91 (570)
T 3b43_A 24 TLQCKVDGTPE------IRIAWYKEHTKLRSAPAYKMQFKNN------VASLVINKVDHSDVGEYTCKAENSVGAVASSA 91 (570)
T ss_dssp EEEEEEESSSS------CEEEEECSSSBCCCCSSEEEECCTT------EEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEccCCC------CEEEEEECCEEccCCCCEEEEEECC------EEEEEEccCChhhCEEEEEEEEeCCceEEEEE
Confidence 36799999998 9999999999998888887764433 36899999999999999999999999877777
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 166 (540)
.+.|.....++.+. .......+.+|+++.|.|.+.|.|.+.+.|+|+|..+....+...... . ...+|.
T Consensus 92 ~l~v~~~~~~p~~~------~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~--~---~~~~L~ 160 (570)
T 3b43_A 92 VLVIKERKLPPSFA------RKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI--H---NVATLQ 160 (570)
T ss_dssp EEEECCCCCCCEES------SCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEE--T---TEEEEE
T ss_pred EEEECCCCCCCccc------ccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEE--C---CEEEEE
Confidence 77765432111111 012234567899999999999999999999999999876655443211 1 123899
Q ss_pred EcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE
Q psy670 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK 246 (540)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~ 246 (540)
|.++..+|+|.|+|.+.|..|.......+.|.... .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus 161 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~----~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~ 236 (570)
T 3b43_A 161 ILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE----VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 236 (570)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTE
T ss_pred ECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCC----CCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCE
Confidence 99999999999999999999988777777776422 36667667777778899999999999999999999999999
Q ss_pred EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC-ceEEeeC
Q psy670 247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP-KIRSEQG 325 (540)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~ 325 (540)
.+.....+.+..... ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.++..+ ....+.+
T Consensus 237 ~i~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~v~~ 305 (570)
T 3b43_A 237 EIRPGGNYKMTLVEN----TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVKQ 305 (570)
T ss_dssp ECCTTSSEEEEEETT----EEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC-------CCEEEECCCSBCCEES
T ss_pred ECcCCCcEEEEEECC----EEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec-------CCcccccCCCccEEcC
Confidence 987766655543322 24799999999999999999999999887777777765 66666543 2345778
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
|+.+.|.|.+.|.|.+.+.|+++|..+....++.+..... ...|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus 306 g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V 381 (570)
T 3b43_A 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381 (570)
T ss_dssp SCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECE
T ss_pred CCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECC----EEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEe
Confidence 9999999999999999999999999998877665543222 237999999999999999999999999999999988
Q ss_pred EEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCc
Q psy670 406 EMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPS 485 (540)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~ 485 (540)
.. +|.+...+....+.+|+.+.|.|.+.|.|+|+
T Consensus 382 ~~----------------------------------------------~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~ 415 (570)
T 3b43_A 382 KE----------------------------------------------PPVFRKKPHPVETLKGADVHLECELQGTPPFQ 415 (570)
T ss_dssp EC----------------------------------------------CCEECSCCCCEEECTTCCEEEEEEEESSSSCC
T ss_pred cC----------------------------------------------CCeeecCCCceeecCCCEEEEEEEEecCCCCE
Confidence 87 88888888888899999999999999999999
Q ss_pred eEEEecCeecCCCCeEEE------------EEEecCCeEEEEEEeeeee
Q psy670 486 VTWMKEKNTVKEDNKHVV------------HIEQVKDVSMNFELWLGIV 522 (540)
Q Consensus 486 v~W~~~~~~l~~~~~~~~------------~~~~~~~g~y~c~~~~~~~ 522 (540)
++|+|+|..+..+.++.+ .+...|.|.|+|.+.+..-
T Consensus 416 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G 464 (570)
T 3b43_A 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464 (570)
T ss_dssp CEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred EEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCC
Confidence 999999999877654432 2344689999999986433
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.4e-55 Score=452.82 Aligned_cols=426 Identities=22% Similarity=0.374 Sum_probs=343.7
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.|.|+ +.|.|+|||..+..+.+++....... .+|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 121 l~C~~~g~p~------~~v~W~k~g~~l~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 188 (570)
T 3b43_A 121 FECRINGSEP------LQVSWYKDGELLKDDANLQTSFIHNV------ATLQILQTDQSHVGQYNCSASNPLGTASSSAK 188 (570)
T ss_dssp EEEEEESSSS------CEEEEEETTEECCCCSSEEEEEETTE------EEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEccCCC------CEEEEEECCEECcCCCCEEEEEECCE------EEEEECcCChHHCEEEEEEEEeCCcEEEEEEE
Confidence 5699999888 89999999999988777765543332 68999999999999999999999998888888
Q ss_pred EEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEE
Q psy670 88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI 167 (540)
Q Consensus 88 l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 167 (540)
|.|.....++.+. .......+.+|+++.|.|.+.|.|.+.+.|+|+|..+..+.++.+.... ....|.|
T Consensus 189 l~v~~~~~pp~~~------~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~-----~~~~L~i 257 (570)
T 3b43_A 189 LTLSEHEVPPFFD------LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE-----NTATLTV 257 (570)
T ss_dssp EEEECCCCCCEEE------ECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEET-----TEEEEEE
T ss_pred EEEcCCCCCCccc------cCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEEC-----CEEEEEE
Confidence 8776433111111 1122345779999999999999999999999999998776665543221 1238999
Q ss_pred cCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCC-ceeecCCCCeEEEEEEecccCCCeEEEEeCCE
Q psy670 168 NNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKP-RIIPNESGTLIQMKCKCSAKPRPEVKWFKADK 246 (540)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~ 246 (540)
.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+.... ....+.+|+.+.|.|.+.|.|.+.+.|++++.
T Consensus 258 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~ 330 (570)
T 3b43_A 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET 330 (570)
T ss_dssp SSBCGGGCEEEEEEEEETTEEEEEEEEECCBC-------CCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTE
T ss_pred cccCcccCEEEEEEEECCCCcEEEEEEEEeec-------CCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCE
Confidence 99999999999999999999988888888875 56655433 23446789999999999999999999999999
Q ss_pred EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC
Q psy670 247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326 (540)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g 326 (540)
.+.......+..... ...|.|.+++.+|+|.|+|.|.|..|.......|.|.. +|.+...+....+.+|
T Consensus 331 ~l~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~P~~~~~~~~~~~~~G 399 (570)
T 3b43_A 331 EIQESSKFRMSFVES----VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKG 399 (570)
T ss_dssp ECCCSSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC-------CCEECSCCCCEEECTT
T ss_pred ECCCCCcEEEEEECC----EEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC-------CCeeecCCCceeecCC
Confidence 998776655543321 24799999999999999999999999988888888876 6777777777788899
Q ss_pred CeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 327 ~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+. .++. ..+|.|.++..+|+|.|+|.|.|..|.......|.|.
T Consensus 400 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 475 (570)
T 3b43_A 400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM--SENF--LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475 (570)
T ss_dssp CCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEE--EETT--EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEE--EcCC--EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec
Confidence 99999999999999999999999999877665443 2222 2379999999999999999999999999988888887
Q ss_pred EEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCce
Q psy670 407 MVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSV 486 (540)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v 486 (540)
. +|.+...+.+..+.+|+.+.|.|.+.|.|++++
T Consensus 476 ~----------------------------------------------~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v 509 (570)
T 3b43_A 476 A----------------------------------------------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISV 509 (570)
T ss_dssp C----------------------------------------------CCEEEECCCCBCCBTTCCEEEEEEEESCSSCCC
T ss_pred c----------------------------------------------CCcccccCCCceecCCCeEEEEEEEecCCCCEE
Confidence 7 888888777888899999999999999999999
Q ss_pred EEEecCeec-CCCCe---------EEEE---EEecCCeEEEEEEeeeeeee
Q psy670 487 TWMKEKNTV-KEDNK---------HVVH---IEQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 487 ~W~~~~~~l-~~~~~---------~~~~---~~~~~~g~y~c~~~~~~~~~ 524 (540)
+|+|++..+ ..+.+ ..+. +...|.|.|+|.+.+.--..
T Consensus 510 ~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~ 560 (570)
T 3b43_A 510 AWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQ 560 (570)
T ss_dssp EEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEE
T ss_pred EEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEE
Confidence 999998554 33222 2333 33468999999998654443
No 3
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.5e-47 Score=399.91 Aligned_cols=404 Identities=16% Similarity=0.275 Sum_probs=307.6
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee--e
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS--T 85 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~--~ 85 (540)
+.|.+.|.|. +.++|+|+|..+... ..|.|.+++.+|+|.|+|.+.|..|.... .
T Consensus 223 l~C~~~g~p~------~~i~W~~~g~~i~~~-----------------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 279 (642)
T 1e07_A 223 LSCHAASNPP------AQYSWFVNGTFQQST-----------------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTV 279 (642)
T ss_pred EEEEcCCCCC------cEEEEEECCeEcccC-----------------CceEEecccccCCeEEEEEEEeCCCceEEeee
Confidence 6799999998 999999999987421 36899999999999999999998876543 4
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEE
Q psy670 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL 165 (540)
Q Consensus 86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 165 (540)
+.|.|...+..+.+. ......+..|+.+.|.|.+.+.| +.+.|+++|..+....+..+... ...|
T Consensus 280 ~~v~v~~~~~~p~i~-------~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~-------~~~L 344 (642)
T 1e07_A 280 TTITVYAEPPKPFIT-------SNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSND-------NRTL 344 (642)
T ss_pred EEEEEEccCCCCEEE-------cCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCC-------CCEE
Confidence 556665543222222 11223456788899999998876 69999999998876666554321 1289
Q ss_pred EEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC
Q psy670 166 EINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA 244 (540)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~ 244 (540)
.|.++..+|+|.|+|.+.|..|.. +..+.|.|...+. .+...+....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus 345 ~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~ 418 (642)
T 1e07_A 345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD------DPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID 418 (642)
T ss_pred EEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCC------CCeecCCceEecCCCcEEEEEEcCccCCCeEEEEEC
Confidence 999999999999999999998764 4567777775221 122234556678999999999999999999999999
Q ss_pred CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEee
Q psy670 245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~ 324 (540)
|..+... ..|.|.+++.+|+|.|+|.|.|..|....+..+.|.....+ .+|.+. ......+.
T Consensus 419 g~~~~~~---------------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~--~~p~i~-~~~~~~v~ 480 (642)
T 1e07_A 419 GNIQQHT---------------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--PKPSIS-SNNSKPVE 480 (642)
T ss_pred CEEcCCC---------------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccC--CCceEe-cCCceeec
Confidence 9876432 15889999999999999999999887655544444332211 134443 33446678
Q ss_pred CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEE
Q psy670 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTL 403 (540)
Q Consensus 325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l 403 (540)
+|+.+.|.|.+. .|.+.+.|+++|..+....++.+. .++. .|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus 481 ~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~~~~~--~~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l 553 (642)
T 1e07_A 481 DKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPRLQLS--NGNR----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553 (642)
T ss_pred CCCeEEEEEECC-CCCcEEEEEECCEeCCCCCcEEEc--CCCc----EEEEeecChhcCceEEEEeEcCCCCccCCCEEE
Confidence 999999999998 488899999999999876654432 2222 899999999999999999999988753 46788
Q ss_pred EEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC
Q psy670 404 NIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE 483 (540)
Q Consensus 404 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~ 483 (540)
.|... |+.+...+....+.+|+.++|.|.+.|.|+
T Consensus 554 ~V~~~---------------------------------------------p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 588 (642)
T 1e07_A 554 DVLYG---------------------------------------------PDTPIISPPDSSYLSGANLNLSCHSASNPS 588 (642)
T ss_pred EEEeC---------------------------------------------CCcceecCCceeEEcCCcEEEEEEeccCCC
Confidence 88751 333455566788899999999999999999
Q ss_pred CceEEEecCeecCCCCeEEE-EEEecCCeEEEEEEeeeeeeee
Q psy670 484 PSVTWMKEKNTVKEDNKHVV-HIEQVKDVSMNFELWLGIVEKR 525 (540)
Q Consensus 484 ~~v~W~~~~~~l~~~~~~~~-~~~~~~~g~y~c~~~~~~~~~~ 525 (540)
|.++|+|+|..+..+....+ .+...|.|.|+|.+.+......
T Consensus 589 p~v~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 631 (642)
T 1e07_A 589 PQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRN 631 (642)
T ss_pred CeEEEEECCEECccCceEEECcccccCCeEEEEEEEecccCcc
Confidence 99999999999987654333 4677899999999997655443
No 4
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=7.2e-48 Score=413.53 Aligned_cols=418 Identities=21% Similarity=0.364 Sum_probs=322.0
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.+.|.+.|.|. +.+.|+|+|..+..+. ..|.|.+++.+|+|.|+|.+.|..+....++
T Consensus 362 ~l~C~~~g~p~------~~v~W~k~g~~~~~~~----------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 419 (816)
T 3dmk_A 362 VFTCQYTGNPI------KTVSWMKDGKAIGHSE----------------SVLRIESVKKEDKGMYQCFVRNDRESAEASA 419 (816)
T ss_dssp EEEEEEEEECC------CEEEEEETTEECSCCS----------------SEEEESSCCGGGCEEEEEEEECSSCEEEECC
T ss_pred EEEEEEeccCC------CEEEEEECCEECCCCC----------------CEEEEcCCCHHHCEEEEEEEECCCCcEEEEE
Confidence 36799999888 8999999999886432 2799999999999999999999988777777
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 166 (540)
.|.|.....++.+. .......+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+..............+.|.
T Consensus 420 ~l~v~~~~~~p~i~------~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~ 493 (816)
T 3dmk_A 420 ELKLGGRFDPPVIR------QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLN 493 (816)
T ss_dssp EEECCCSSCCCEEE------EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEE
T ss_pred EEEEccccCCCceE------ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEE
Confidence 77765322121111 012234678999999999999999999999999999987777666544444444566899
Q ss_pred EcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE
Q psy670 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK 246 (540)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~ 246 (540)
|.+++.+|+|.|+|.+.|..|.....+.|.|.. +|.+. .+....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus 494 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~-~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~ 565 (816)
T 3dmk_A 494 ITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-------LPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNR 565 (816)
T ss_dssp ESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS-------SCEEC-CCCCEEEETTCCEEEECCEECSSEEEEEEEETTE
T ss_pred EeeccccCCEEEEEEEEECCCeEEEEEEEEEec-------CCeeE-ccCCeEEecCCeEEEEEEecCCCCCEEEEEECCe
Confidence 999999999999999999999988889999875 44433 3344567789999999999999989999999999
Q ss_pred EeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEe-CCceEEe
Q psy670 247 LVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIE-KPKIRSE 323 (540)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~ 323 (540)
.+......... ..+ .|.|.++. .+|+|.|+|.|.|..|.. ...+.+.|... |.+.. .+....+
T Consensus 566 ~l~~~~~~~~~---~~~----~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~-------p~~~~~~~~~~~~ 631 (816)
T 3dmk_A 566 ALPINRKQKVF---PNG----TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL-------PRIIPFAFEEGPA 631 (816)
T ss_dssp ESCCSTTEEEC---TTS----EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECC-------CCCBCCCCCSSCE
T ss_pred EcccCCceEEe---cCC----eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecC-------Ccccccccccccc
Confidence 88765544332 111 68999998 589999999999998853 33455555542 22221 2233457
Q ss_pred eCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 324 QGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
.+|+.+.|.|.+.+.+.+ .+.|+++|..+............. ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 632 ~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 708 (816)
T 3dmk_A 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR---RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708 (816)
T ss_dssp ESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETT---TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCC---CeeEEEEccCChhhCEEEEEEEEeCCccEEEEEE
Confidence 789999999999876554 999999999887655544332211 2348999999999999999999999999999999
Q ss_pred EEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeec
Q psy670 403 LNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY 482 (540)
Q Consensus 403 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p 482 (540)
|.|.. +|.+...+....+.+|+.++|.|.+.|.|
T Consensus 709 l~V~~----------------------------------------------~P~~~~~~~~~~v~~G~~v~l~C~~~g~P 742 (816)
T 3dmk_A 709 LNVYV----------------------------------------------PPRWILEPTDKAFAQGSDAKVECKADGFP 742 (816)
T ss_dssp ECEEE----------------------------------------------EEEEEECCCCEEEETTCCEEEECEEEEES
T ss_pred EEEEe----------------------------------------------CCceeeecccceecCCCcEEEEEEEecCC
Confidence 99887 88888778888899999999999999999
Q ss_pred CCceEEEecCeecCCC-------Ce--------EEEEEEecCCeEEEEEEeeeeee
Q psy670 483 EPSVTWMKEKNTVKED-------NK--------HVVHIEQVKDVSMNFELWLGIVE 523 (540)
Q Consensus 483 ~~~v~W~~~~~~l~~~-------~~--------~~~~~~~~~~g~y~c~~~~~~~~ 523 (540)
+|.++|+|++..+... .. ....+...|.|.|+|.+.+.--+
T Consensus 743 ~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 798 (816)
T 3dmk_A 743 KPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGS 798 (816)
T ss_dssp CCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSS
T ss_pred CCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCC
Confidence 9999999987544221 11 11135557899999999865443
No 5
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.3e-46 Score=392.87 Aligned_cols=416 Identities=17% Similarity=0.280 Sum_probs=308.3
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce-eee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~ 85 (540)
.+.|.+.| |. +.+.|+|+|..+..+.++.+.. ++ .+|.|.+++.+|+|.|+|.+.|..+.. +..
T Consensus 130 ~l~C~~~~-p~------~~v~W~~~g~~l~~~~~~~~~~--~~------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~ 194 (642)
T 1e07_A 130 AFTCEPET-QD------ATYLWWVNNQSLPVSPRLQLSN--GN------RTLTLFNVTRNDTASYKCETQNPVSARRSDS 194 (642)
T ss_pred EEEEECCC-CC------eeEEEEECCeECCCCCceEEcC--CC------CEEEEeCCCcccCeeEEEEEecCCCCcccce
Confidence 36788888 66 8999999999998777766532 22 489999999999999999999988764 356
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEE
Q psy670 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL 165 (540)
Q Consensus 86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 165 (540)
+.|.|...+..+.+. .....+.+|+.+.|.|.+.+.|.+.+.|+++|..+... ..|
T Consensus 195 ~~l~V~~~p~~~~~~--------~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~----------------~~L 250 (642)
T 1e07_A 195 VILNVLYGPDAPTIS--------PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST----------------QEL 250 (642)
T ss_pred EEEEEEeCCCCcEEe--------cCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccC----------------Cce
Confidence 778887655333322 23446789999999999999999999999999877422 179
Q ss_pred EEcCCCCCCCeEEEEEEEcCCceeE--EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe
Q psy670 166 EINNPTKDDGGNYRCNACNSIGESN--ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK 243 (540)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~ 243 (540)
.|.+++.+|+|.|+|.+.|..|... ..+.|.|...+. .|.+.. +....+..|+.+.|.|.+.+.| +.+.|++
T Consensus 251 ~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~----~p~i~~-~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~ 324 (642)
T 1e07_A 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP----KPFITS-NNSNPVEDEDAVALTCEPEIQN-TTYLWWV 324 (642)
T ss_pred EEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCC----CCEEEc-CCceeEecCCcEEEEEECCCCC-ccEEEEE
Confidence 9999999999999999999887653 345566654221 333332 3334455688899999999876 6899999
Q ss_pred CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEE
Q psy670 244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRS 322 (540)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~ 322 (540)
+|..+....+..+... . ..|.|.++..+|+|.|+|.+.|..|.. +..+.|.|...+ +.....+....
T Consensus 325 ~g~~l~~~~~~~~~~~--~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p------~~~~~~~~~~~ 392 (642)
T 1e07_A 325 NNQSLPVSPRLQLSND--N----RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP------DDPTISPSYTY 392 (642)
T ss_pred CCccCCCcCCEEEeCC--C----CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCC------CCCeecCCceE
Confidence 9998866555444221 1 279999999999999999999988764 445677776532 12223445567
Q ss_pred eeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 323 ~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
+.+|+.+.|.|.+.|.|.+.+.|+++|..+.... .|.|.++..+|+|.|+|.|.|..|....+..
T Consensus 393 ~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~---------------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 457 (642)
T 1e07_A 393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ---------------ELFISNITEKNSGLYTCQANNSASGHSRTTV 457 (642)
T ss_pred ecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCc---------------eEEEccCChhhCeEEEEEEEcCCCCCcccce
Confidence 8899999999999999999999999998775321 6999999999999999999999987766554
Q ss_pred EEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeec
Q psy670 403 LNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY 482 (540)
Q Consensus 403 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p 482 (540)
+.|.... ...+|.|.. +....+.+|+.++|.|.+.+ |
T Consensus 458 ~~v~v~~-----------------------------------------~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~ 494 (642)
T 1e07_A 458 KTITVSA-----------------------------------------ELPKPSISS-NNSKPVEDKDAVAFTCEPEA-Q 494 (642)
T ss_pred EEEEEec-----------------------------------------cCCCceEec-CCceeecCCCeEEEEEECCC-C
Confidence 4444310 011455544 34567889999999999984 7
Q ss_pred CCceEEEecCeecCCCCeEE-------E---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670 483 EPSVTWMKEKNTVKEDNKHV-------V---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP 537 (540)
Q Consensus 483 ~~~v~W~~~~~~l~~~~~~~-------~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~ 537 (540)
.+.++|+|+|..+..+.++. + .+...|.|.|+|.+.............+.+..+|
T Consensus 495 ~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p 559 (642)
T 1e07_A 495 NTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP 559 (642)
T ss_pred CcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCC
Confidence 88999999999887654322 2 3455789999999986544333333444444444
No 6
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=7.6e-47 Score=384.82 Aligned_cols=446 Identities=14% Similarity=0.184 Sum_probs=288.4
Q ss_pred ccceeeeCcceeEEeecceeeeeecCe--ecc------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGS--LLK------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~--~l~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 72 (540)
.+.|.+.|.|. +.+.|||++. .+. ...|+.... ++ ...+|+|.+++.+|+|.|+
T Consensus 19 ~L~C~~~~~~~------~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~----~~~~L~I~~v~~~D~G~Y~ 86 (523)
T 2rcj_C 19 TISCTGTSSGS------ITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSK--SG----TSASLAISGLEAEDESDYY 86 (523)
T ss_pred EEEEEEeccCC------ceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEec--CC----CEEEEEECCCChhhCEEEE
Confidence 36799998887 8999999852 211 123444221 11 2368999999999999999
Q ss_pred EEEEccCcc---eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCC
Q psy670 73 VIAKNKNGE---GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDT 146 (540)
Q Consensus 73 C~~~~~~~~---~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~ 146 (540)
|.+.|..|. ....+.|.|...+ .++.+. +......+.+|+.+.|.|.+.|.|++ .+.|+|+|..+..+
T Consensus 87 C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~------~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 160 (523)
T 2rcj_C 87 CASWNSSDNSYVFGTGTKVTVLGQPKANPTVT------LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAG 160 (523)
T ss_pred EEEccCCCccccccCceEEEeccCCCcCCeEE------ecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCc
Confidence 999997653 2345666664321 011110 11112344579999999999887654 89999999888654
Q ss_pred CceEEE-EeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeE
Q psy670 147 GRIKMS-KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI 225 (540)
Q Consensus 147 ~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 225 (540)
...... ....+.....+.|.|.++..+|+|.|+|.+.|..+.....+.+.+... ...+|.+........+.+|+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~---~~~~P~v~~~~~~~~~~~G~~~ 237 (523)
T 2rcj_C 161 VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSA---STKGPSVFPLAPSSKSTSGGTA 237 (523)
T ss_pred eEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCC---CCcCCEEEecCCCcccccCCce
Confidence 322111 111122223357999999999999999999998876555544332211 1124555433333456789999
Q ss_pred EEEEEeccc-CCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 226 QMKCKCSAK-PRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 226 ~l~C~~~~~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
.|.|.+.+. |.+ .|.|++++..+..................+.|.|.++..+| |.|+|.|.|..|.......+.+..
T Consensus 238 ~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~ 316 (523)
T 2rcj_C 238 ALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS 316 (523)
T ss_pred EEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc
Confidence 999999885 777 89999999875432111111111222334589999999999 999999999988866665555433
Q ss_pred ccCCCCCCCeE-EeCCceEE-eeCCCeEEEEEEEEccCC----CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEc
Q psy670 304 EAEPEGDPPTF-IEKPKIRS-EQGGKLVVMECKVKAKPM----PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVK 376 (540)
Q Consensus 304 ~~~~~~~~p~~-~~~~~~~~-~~~g~~v~l~C~~~~~p~----~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~ 376 (540)
.|.+ +..+.... +.+|+.+.|.|.+.|.|+ +.|.|+++|..+............++. ...+.|.|.
T Consensus 317 -------~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~ 389 (523)
T 2rcj_C 317 -------LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVL 389 (523)
T ss_pred -------CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEEC
Confidence 2333 33343333 678999999999998653 489999999998765432221122222 233479999
Q ss_pred CCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeece
Q psy670 377 DPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPV 456 (540)
Q Consensus 377 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 456 (540)
.+..+|+|.|+|.|.|..+.......+.+.. ....+|.
T Consensus 390 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~------------------------------------------~~~~~P~ 427 (523)
T 2rcj_C 390 HQNWLDGKEYKCKVSNKALPAPIEKTISKAK------------------------------------------GQPREPQ 427 (523)
T ss_pred HHHhcCCCeEEEEEeCCCCCCceeEEEEccc------------------------------------------CCCCCCE
Confidence 9999999999999999877665444444210 0012565
Q ss_pred eecCCcEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCC----------eEE----EEEEe---cCCeEEEEEE
Q psy670 457 IREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDN----------KHV----VHIEQ---VKDVSMNFEL 517 (540)
Q Consensus 457 i~~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~----------~~~----~~~~~---~~~g~y~c~~ 517 (540)
+...+.......|+.++|.|.+.|.|++ .|+|+|||..+.... .+. +.+.. .+.|.|+|.+
T Consensus 428 v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a 507 (523)
T 2rcj_C 428 VYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV 507 (523)
T ss_pred EEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEE
Confidence 5433222222234459999999998766 999999999886321 111 12332 3478899988
Q ss_pred eeeeee
Q psy670 518 WLGIVE 523 (540)
Q Consensus 518 ~~~~~~ 523 (540)
....+.
T Consensus 508 ~n~~l~ 513 (523)
T 2rcj_C 508 MHEALH 513 (523)
T ss_pred EcCCcC
Confidence 876554
No 7
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=3.6e-47 Score=387.26 Aligned_cols=402 Identities=13% Similarity=0.160 Sum_probs=287.8
Q ss_pred eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCC
Q psy670 25 QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA 104 (540)
Q Consensus 25 ~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~ 104 (540)
.+.|+|++.++. ..... ++|+|.+++.+|+|.|+|.+.| | .+.++.|.|..++. +.
T Consensus 63 ~v~W~~~~~~~~-------~~~~~-------~~L~I~~~~~~D~G~Y~C~a~n--g-~~~~~~l~V~~p~~-~~------ 118 (524)
T 2ec8_A 63 FVKWTFEILDET-------NENKQ-------NEWITEKAEATNTGKYTCTNKH--G-LSNSIYVFVRDPAK-LF------ 118 (524)
T ss_dssp EEEEEEESSSCC-------EEECS-------SEEEESSCCSTTCEEEEEEETT--S-CEEEEEEECCCSSC-SB------
T ss_pred eEEEcCCCcccc-------ccCcc-------ceEEEcccchhhCEEEEEeecC--C-cceEEEEEECCCCc-cc------
Confidence 699999999772 11112 4899999999999999999999 4 36677777764431 11
Q ss_pred CCCCCCCccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEEE
Q psy670 105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCNA 182 (540)
Q Consensus 105 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~ 182 (540)
.......+.+|+.+.|.|.+.+.+.+.+.|++ +|..+..+.++..... . .|.|.+++.+|+| .|+|.+
T Consensus 119 --~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~-----~---~L~i~~~~~~d~G~~Y~C~a 188 (524)
T 2ec8_A 119 --LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPK-----A---GIMIKSVKRAYHRLCLHCSV 188 (524)
T ss_dssp --CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETT-----T---EEEEESCCGGGTTCEEEEEE
T ss_pred --ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCC-----c---cEEEeccchhhCCceEEEEE
Confidence 12234567899999999999887778999998 7887766555444321 1 7999999999999 999999
Q ss_pred EcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEe--eccCceEEEE
Q psy670 183 CNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLV--KESSKIKIIV 258 (540)
Q Consensus 183 ~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l--~~~~~~~~~~ 258 (540)
.+..+.. +..+.|.|.... ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+ .......+.
T Consensus 189 ~n~~~~~~s~~~~l~V~~~~---~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~- 264 (524)
T 2ec8_A 189 DQEGKSVLSEKFILKVRPAF---KAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH- 264 (524)
T ss_dssp C----CCCCCCEECCEECCC---CSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC-
T ss_pred EECCceEEEEEEEEEEEeCC---CCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc-
Confidence 9886654 346677765321 1377787777777889999999999999988876 9999999873 222211110
Q ss_pred ecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC---ceEEeeCCCeEEEEEEE
Q psy670 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP---KIRSEQGGKLVVMECKV 335 (540)
Q Consensus 259 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~~ 335 (540)
..........|.|.+++.+|+|.|+|.+.|..|.....+.|.|.. +|.+...+ ....+.+|+.+.|.|.+
T Consensus 265 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~v~~G~~v~l~C~~ 337 (524)
T 2ec8_A 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-------KGFINIFPMINTTVFVNDGENVDLIVEY 337 (524)
T ss_dssp SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES-------SCEEEEEESSCSEEEECTTCCEEEEEEE
T ss_pred cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec-------cCceEeecCCCceEEEcCCCcEEEEEEE
Confidence 001223446899999999999999999999999888888888875 55554433 36778899999999999
Q ss_pred EccCCCe-EEEEECCEEccCCCceEEEEEec-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEE
Q psy670 336 KAKPMPE-IVWFHEGKELQQTDRISWNVTLK-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKY 413 (540)
Q Consensus 336 ~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~ 413 (540)
.|.|.+. +.|+++|..+............+ ......+|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 338 ~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~------ 411 (524)
T 2ec8_A 338 EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT------ 411 (524)
T ss_dssp EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE------
T ss_pred eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec------
Confidence 9999998 99999999887654211111111 112455899999999999999999999999999999999887
Q ss_pred eeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCe
Q psy670 414 RVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKN 493 (540)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~ 493 (540)
+|.|...+. ..+| +|.|.+.|.|.|+|+|++++.
T Consensus 412 ----------------------------------------~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~ 445 (524)
T 2ec8_A 412 ----------------------------------------KPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPG 445 (524)
T ss_dssp ----------------------------------------EEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC--
T ss_pred ----------------------------------------CCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCC
Confidence 666654332 3455 999999999999999999976
Q ss_pred ecC-------------------CCCeEE----EEEE-ecCCeEEEEEEeeeeee
Q psy670 494 TVK-------------------EDNKHV----VHIE-QVKDVSMNFELWLGIVE 523 (540)
Q Consensus 494 ~l~-------------------~~~~~~----~~~~-~~~~g~y~c~~~~~~~~ 523 (540)
.+. .+.... +.+. ..|.|.|+|.+.+.-..
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~ 499 (524)
T 2ec8_A 446 TEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK 499 (524)
T ss_dssp --------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCE
T ss_pred cccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCc
Confidence 541 111111 2222 37899999999864443
No 8
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-47 Score=382.51 Aligned_cols=405 Identities=14% Similarity=0.188 Sum_probs=275.7
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.+.|.+.|.|. ..+.|++++..+.....+.. ++ + ...+|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus 67 ~L~c~~~~~~~------~~~~W~~~~~~l~~~~~~~~----~~-r--~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~ 133 (527)
T 3qs9_E 67 TLQVLVDAPGN------ISCLWVFKHSSLNCQPHFDL----QN-R--GVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (527)
T ss_dssp EEEEECSCCSS------CEEEEEETTEEECCCCBC------------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred EEEEEEecCCc------eeEEEEecCCccCcccccCC----Cc-c--eEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence 35688877776 89999999998865555532 11 1 235799999999999999999999887666555
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 166 (540)
.|.|. +..+. .+..+.....|+.+.|.|.+.|+|.|.+.|++++..+........ ......
T Consensus 134 ~v~v~--~~~~~--------~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~---------~~~~~~ 194 (527)
T 3qs9_E 134 TVSIR--NTLLY--------TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESP---------AVVKKE 194 (527)
T ss_dssp EEEEC---------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC----------------------CEEEC
T ss_pred EEEEC--Cceee--------ccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCC---------cEEEEe
Confidence 55554 21111 112334456678889999999999999999998776532110000 000222
Q ss_pred EcCCCCCCCeEEEEEEEcCCceeEEE-EEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeC
Q psy670 167 INNPTKDDGGNYRCNACNSIGESNAN-IALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKA 244 (540)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~ 244 (540)
...+...|+|.|+|.|.|..|..... +.|.|.. .|.+ .+....+.+|+.+.|.|.+. +.|.+.+.|+++
T Consensus 195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-------~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~ 265 (527)
T 3qs9_E 195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265 (527)
T ss_dssp CSEECCCCSSCEEEEEECSSCEEEEECEEEESSS-------CCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECS
T ss_pred eeeccccCCEEEEEEEEeCCCcccceEEEEEEec-------cCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEEC
Confidence 33345789999999999999886544 6777764 3333 44567788999999999996 899999999999
Q ss_pred CEEeeccCceEEEEecCC--CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC--ce
Q psy670 245 DKLVKESSKIKIIVNEQD--DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP--KI 320 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~--~~ 320 (540)
+..+.............. .....+|.|.+++.+|+|.|+|.|.|. ....+.|.|.. +|.+...+ ..
T Consensus 266 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~-------~p~i~~~~~~~~ 335 (527)
T 3qs9_E 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE-------KGFINATNSSED 335 (527)
T ss_dssp SSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC---------CEEECCCSCCE
T ss_pred CEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc-------cCccccccCccc
Confidence 988766543322221111 122346999999999999999999987 55666677755 44444333 33
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
..+.+|+.+.|.|.+.|.|.|.|.|+++|..+....... .++. .|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 336 ~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~----~L~I~~v~~~D~G~YtC~A~N~~g~~~~~ 407 (527)
T 3qs9_E 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGY----SISKFCNHKHQPGEYIFHAENDDAQFTKM 407 (527)
T ss_dssp ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSS----EEEEECCCTTCCSCEEEEEEETTEEEEEE
T ss_pred EEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCc----EEEEecCCcccCEEEEEEEEeCCCcEEEE
Confidence 567789999999999999999999999999987654421 1222 79999999999999999999999999988
Q ss_pred EEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEee
Q psy670 401 LTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMS 480 (540)
Q Consensus 401 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g 480 (540)
+.|.|.. +|.|...+. | ..|.|.+.|
T Consensus 408 ~~L~V~~----------------------------------------------~P~i~~~~~------~--~~l~C~a~g 433 (527)
T 3qs9_E 408 FTLNIRR----------------------------------------------KPQVLAEAS------A--SQASCFSDG 433 (527)
T ss_dssp EEEC--C----------------------------------------------CCEEEECCC------C--E---EEEEC
T ss_pred EEEEEec----------------------------------------------CCeEEEeCC------C--CEEEEEEEE
Confidence 8888887 777765442 2 357999999
Q ss_pred ecCCceEEEecCeecCCC-------------------C-eE--EEEE-EecCCeEEEEEEeeeeeee
Q psy670 481 MYEPSVTWMKEKNTVKED-------------------N-KH--VVHI-EQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 481 ~p~~~v~W~~~~~~l~~~-------------------~-~~--~~~~-~~~~~g~y~c~~~~~~~~~ 524 (540)
.|.|.|+|++++...... . .. .+.+ ...|.|.|+|.+.+.-...
T Consensus 434 ~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~ 500 (527)
T 3qs9_E 434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTS 500 (527)
T ss_dssp SSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEE
T ss_pred EcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCc
Confidence 999999999876543110 0 01 1111 2357999999998654433
No 9
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-46 Score=398.99 Aligned_cols=424 Identities=20% Similarity=0.328 Sum_probs=319.5
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecc------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLK------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE 81 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~ 81 (540)
+.|.+.|.|. +.+.|+|++.... ...+... .. .+|.|.+++.+|+|.|+|.+.|..|.
T Consensus 268 L~C~~~g~p~------p~v~W~k~~~~~~~~~~~~~~~~~~~---~~-------~~L~i~~v~~~D~G~Y~C~a~n~~g~ 331 (816)
T 3dmk_A 268 LLCPAQGYPV------PVFRWYKFIEGTTRKQAVVLNDRVKQ---VS-------GTLIIKDAVVEDSGKYLCVVNNSVGG 331 (816)
T ss_dssp ECCCCBCSSC------CEEEEEEECTTSSCEEECCCSSSEEE---ET-------TEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred EEEEeeecCC------CeEEEEeCCCCCccCcceecCCceEe---cc-------ceEEECCCCHhHCEEEEEEEEcCCCc
Confidence 5699999988 9999999754321 2222211 12 38999999999999999999999998
Q ss_pred eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceE
Q psy670 82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161 (540)
Q Consensus 82 ~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (540)
.+..+.|.|..++ .+.+ ......+.+|+++.|.|.+.+.|.+.+.|+++|..+.....
T Consensus 332 ~~~~~~l~V~~~~-~~~~--------~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~------------- 389 (816)
T 3dmk_A 332 ESVETVLTVTAPL-SAKI--------DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------------- 389 (816)
T ss_dssp EEEEEEEEECEEE-EEEE--------ESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS-------------
T ss_pred eEEEEEEEEcCCC-ceee--------CCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCC-------------
Confidence 8778888887543 2211 12245678999999999999999999999999998864321
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEE
Q psy670 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKW 241 (540)
Q Consensus 162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W 241 (540)
.|.|.+++.+|+|.|+|.+.|..+.....+.+.|.... .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus 390 --~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W 463 (816)
T 3dmk_A 390 --VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF----DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW 463 (816)
T ss_dssp --EEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSS----CCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEE
T ss_pred --EEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcccc----CCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEE
Confidence 79999999999999999999999887777777775322 266676666677788999999999999999999999
Q ss_pred EeCCEEeeccCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCce
Q psy670 242 FKADKLVKESSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320 (540)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~ 320 (540)
++++..+........... ...+...+.|.|.+++.+|+|.|+|.+.|..|.......+.|.. +|. +..+..
T Consensus 464 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~-~~~~~~ 535 (816)
T 3dmk_A 464 ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-------LPY-IRQMEK 535 (816)
T ss_dssp EETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS-------SCE-ECCCCC
T ss_pred EECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEec-------CCe-eEccCC
Confidence 999999877665544321 12334456799999999999999999999999888888888765 443 334445
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEEEEEEcCCeee-E
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYKCNIKNFHGEL-N 398 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~-~ 398 (540)
..+..|+.+.|.|.+.+.|.+.+.|+++|..+........ . .++ +|.|.++. .+|+|.|+|.|.|..|.. .
T Consensus 536 ~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~--~-~~~----~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~ 608 (816)
T 3dmk_A 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV--F-PNG----TLIIENVERNSDQATYTCVAKNQEGYSAR 608 (816)
T ss_dssp EEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEE--C-TTS----EEEESSCCHHHHCEEEEEEEEESSSCEEE
T ss_pred eEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEE--e-cCC----eEEEEecCccccCEEEEEEEEECCCceee
Confidence 6788999999999999999999999999999876655332 1 222 79999998 589999999999998853 4
Q ss_pred EEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeec-CCcEEEecCCCeEEEEEE
Q psy670 399 ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE-VPKVVTISKKKTVVIECK 477 (540)
Q Consensus 399 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~~~~~~~~g~~~~l~C~ 477 (540)
..+.+.|.. +|.+.. .+....+.+|+.++|.|.
T Consensus 609 ~~~~v~v~~----------------------------------------------~p~~~~~~~~~~~~~~G~~v~L~C~ 642 (816)
T 3dmk_A 609 GSLEVQVMV----------------------------------------------LPRIIPFAFEEGPAQVGQYLTLHCS 642 (816)
T ss_dssp EEEEEEEEC----------------------------------------------CCCCBCCCCCSSCEESSCEEEEEEB
T ss_pred eeEEEEEec----------------------------------------------CCccccccccccccCCCCeEEEEEE
Confidence 456666655 444432 223445778999999999
Q ss_pred EeeecCC-ceEEEecCeecCCCC----------eEEEE---EEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670 478 VMSMYEP-SVTWMKEKNTVKEDN----------KHVVH---IEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP 537 (540)
Q Consensus 478 v~g~p~~-~v~W~~~~~~l~~~~----------~~~~~---~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~ 537 (540)
+.+.|++ .++|+++|..+..+. ...+. +...|.|.|+|.+........ ....+.+...|
T Consensus 643 ~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~~~P 715 (816)
T 3dmk_A 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ-FTTPLNVYVPP 715 (816)
T ss_dssp CCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEEEECEEEEE
T ss_pred EeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEE-EEEEEEEEeCC
Confidence 9876665 999999999885331 22233 445689999999986433332 23344444444
No 10
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=9.4e-45 Score=374.82 Aligned_cols=429 Identities=17% Similarity=0.227 Sum_probs=298.0
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecc--------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLK--------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 72 (540)
.+.|.+.|.|. +..+.+.|+|++..+. ...|+.+....++ ...+|+|.+++.+|+|.|+
T Consensus 19 ~L~C~~~~~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----g~~~L~I~~v~~~D~G~Y~ 91 (585)
T 2ocw_A 19 SITCYYPPTSV---NRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN----GTFVVNIAQLSQDDSGRYK 91 (585)
T ss_pred EEEEeCCCCcC---CCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCC----CEEEEEECCCCcccCEEEE
Confidence 36699998865 1224899999986431 1234443322121 2468999999999999999
Q ss_pred EEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCCceEEEeCCEeec----C--
Q psy670 73 VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIE----D-- 145 (540)
Q Consensus 73 C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~----~-- 145 (540)
|.+.|..+..+..+.|.|...+ .+. .......+.+|+.+.|.|.+.+. +.+.+.|+|++.... .
T Consensus 92 C~~~n~~~~~~~~~~l~V~~~p-~~~--------~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~ 162 (585)
T 2ocw_A 92 CGLGINSRGLSFDVSLEVSQGP-GLL--------NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS 162 (585)
T ss_pred EEcccCCCCceEEEEEEEecCc-ccc--------CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence 9999988877788888887654 111 12334568899999999999755 456899999875321 1
Q ss_pred -------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceee
Q psy670 146 -------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218 (540)
Q Consensus 146 -------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~ 218 (540)
..+..+... +.....++|.|.+++.+|+|.|+|.+.|..+.....+.|.|... + +....
T Consensus 163 ~~~~~~~~~r~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~------~------p~~~~ 228 (585)
T 2ocw_A 163 GYVNPNYTGRIRLDIQ--GTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP------E------PELVY 228 (585)
T ss_pred cccCccccCcEEEEec--cCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccC------C------CceeE
Confidence 123333221 22233458999999999999999999999888888888888741 1 23445
Q ss_pred cCCCCeEEEEEEecccC-C-CeEEEE-eCCE---Eeec---------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670 219 NESGTLIQMKCKCSAKP-R-PEVKWF-KADK---LVKE---------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~~p-~-~~v~W~-~~~~---~l~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 283 (540)
+.+|+.+.|.|.+.+.+ . +.+.|+ +++. .+.. ..+..+ ..........|.|.+++.+|+|.|+
T Consensus 229 ~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~L~i~~v~~~d~G~Y~ 306 (585)
T 2ocw_A 229 EDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILL--NPQDKDGSFSVVITGLRKEDAGRYL 306 (585)
T ss_pred EcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEe--eccCCCcEEEEEEccCChhhCEEEE
Confidence 67899999999984422 2 678897 7773 2211 111111 1111122237999999999999999
Q ss_pred EEEEcCCCCee----eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeE----EEEE--CCE--E
Q psy670 284 CNVKNEFGESN----ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI----VWFH--EGK--E 351 (540)
Q Consensus 284 C~~~~~~~~~~----~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i----~W~~--~~~--~ 351 (540)
|.|.|..+... ..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+ .|++ +|. .
T Consensus 307 C~a~n~g~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~ 379 (585)
T 2ocw_A 307 CGAHSDGQLQEGSPIQAWQLFVNE-------ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPL 379 (585)
T ss_pred EEEEcCCCccccCceeeEEEEEec-------ccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCce
Confidence 99999533321 666777765 455555667778889999999999999999876 7999 876 4
Q ss_pred ccCCCc-------eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeee
Q psy670 352 LQQTDR-------ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK 424 (540)
Q Consensus 352 ~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 424 (540)
+..... .+..+..+......+|.|.+++.+|+|.|+|.| |..|....++.|.|...
T Consensus 380 l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~---------------- 442 (585)
T 2ocw_A 380 LVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG---------------- 442 (585)
T ss_pred eeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC----------------
Confidence 432111 111122111112236999999999999999999 88888888888888751
Q ss_pred eeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEe----eecCCceEEEecCeecCCCC-
Q psy670 425 MGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVM----SMYEPSVTWMKEKNTVKEDN- 499 (540)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~----g~p~~~v~W~~~~~~l~~~~- 499 (540)
+|.+. .+....+.+|+.++|.|.+. |.|.+.|+|+|+|..+..+.
T Consensus 443 -----------------------------~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~ 492 (585)
T 2ocw_A 443 -----------------------------EPNLK-VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD 492 (585)
T ss_pred -----------------------------ccccc-cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccC
Confidence 33333 36677899999999999997 67888999999998764321
Q ss_pred ---------------eEEE---EEEecCCeEEEEEEeeee
Q psy670 500 ---------------KHVV---HIEQVKDVSMNFELWLGI 521 (540)
Q Consensus 500 ---------------~~~~---~~~~~~~g~y~c~~~~~~ 521 (540)
...+ .+...|.|.|+|.+.+..
T Consensus 493 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 532 (585)
T 2ocw_A 493 EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532 (585)
T ss_pred CCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCC
Confidence 1123 345578999999998754
No 11
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.9e-45 Score=366.04 Aligned_cols=395 Identities=15% Similarity=0.189 Sum_probs=278.1
Q ss_pred ccceeeeCcceeEEeeccee-----eeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670 7 LKSYTLEGEPTKQIEANFQM-----NMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE 81 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~-----~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~ 81 (540)
.+.|.+.| |. |.+ .|+|++..+... ++ ..|.|.+++. |+| |+|.+.+..+.
T Consensus 18 ~L~C~~~g-p~------p~~~~~~~~w~k~~~~~~~~-~~--------------~~l~i~~v~~-d~g-Y~C~a~~~~~~ 73 (450)
T 1z7z_I 18 LVTCSTSC-DQ------PMLLGIETPLPKKELLLPGN-NR--------------KVYELSNVQE-DSQ-PMCYSNCPDGQ 73 (450)
T ss_dssp EEEEECCS-SC------CCEEEECSSSCEEECCSSTT-TE--------------EEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred EEEEEccC-CC------cccccccceeeecceEecCC-Cc--------------eEEEEEeccc-CCe-eEEEEeCCCCc
Confidence 36799999 77 788 999998865421 11 3788999987 999 99999877666
Q ss_pred eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCC---ceEEEeCCEeecCCCceEEEEeecCc
Q psy670 82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMP---DIIWYQGTKVIEDTGRIKMSKKSIGK 158 (540)
Q Consensus 82 ~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~~~~ 158 (540)
.+..+.|.|...|..+.+ ...+..+.+|+.+.|.|.+.+.|.+ .|.|+|++..+...... .
T Consensus 74 ~~~~~~l~V~~~P~~~~~--------~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~--------~ 137 (450)
T 1z7z_I 74 STAKTFLTVYWTPERVEL--------APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------G 137 (450)
T ss_dssp EEEECEEEEEBCCSEEEE--------CCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--------T
T ss_pred ceeEEEEEEEeCCCccee--------cCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc--------c
Confidence 677788888765422211 1234568899999999999998887 89999999887543211 1
Q ss_pred ceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE--------EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEE
Q psy670 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESN--------ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230 (540)
Q Consensus 159 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--------~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~ 230 (540)
......|.|.+++.+|+|.|+|.+.|..|... ....+.|...+ ..+|.+... ..+.+|+.+.|.|.
T Consensus 138 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~---~~~p~~~~~---~~v~~G~~v~l~C~ 211 (450)
T 1z7z_I 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP---ATPPQLVSP---RVLEVDTQGTVVCS 211 (450)
T ss_dssp TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCC---SSCCEEECC---SEEETTSEEEEEEE
T ss_pred cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccC---CCCCEecCc---eeEEeCCcEEEEEE
Confidence 22234899999999999999999998866321 23344444321 113333221 56778999999999
Q ss_pred eccc-C--CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcE--EEEEEEEcCCCCeeeeEEEEEeecc
Q psy670 231 CSAK-P--RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG--TYRCNVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 231 ~~~~-p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~y~C~~~~~~~~~~~~~~l~v~~~~ 305 (540)
+.+. | .+.+.|++++..+... .... .......+.+ +++.+|+| .|+|.+.|..|.......|.|...+
T Consensus 212 ~~g~~P~~~~~~~W~~~~~~~~~~----~~~~--~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~ 284 (450)
T 1z7z_I 212 LDGLFPVSEAQVHLALGDQRLNPT----VTYG--NDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (450)
T ss_dssp EESCTTGGGCEEEEEETTEECCCE----EEEE--TTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred eeCCCCCCceEEEEeCCCEeCCce----EEec--CCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC
Confidence 9997 7 7899999999887651 1111 1222223333 77899999 9999999998888888888887643
Q ss_pred CCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670 306 EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385 (540)
Q Consensus 306 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 385 (540)
+|.+... ...+.+|+.++|.|.+. |.+.+.| +|..+..... ...|.|..+..+|+|.
T Consensus 285 -----~p~i~~~--~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~~------------~~~L~i~~~~~~d~G~ 341 (450)
T 1z7z_I 285 -----APNVILT--KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGP------------RAQLLLKATPEDNGRS 341 (450)
T ss_dssp -----CCEEEES--CSEEETTCEEEEEEEC--------------------CC------------CCCEEEECCGGGTTCE
T ss_pred -----CCeEecC--CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCCc------------eEEEEEecCcccCCce
Confidence 3555433 34788999999999997 8889999 7766622111 1179999999999999
Q ss_pred EEEEEEcCCe----eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC-
Q psy670 386 YKCNIKNFHG----ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV- 460 (540)
Q Consensus 386 Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~- 460 (540)
|+|.|.|..+ ....++.|.|.. +|.+...
T Consensus 342 Y~C~a~n~~~g~~~~~~~~~~l~V~~----------------------------------------------~P~~~~~~ 375 (450)
T 1z7z_I 342 FSCSATLEVAGQLIHKNQTRELRVLY----------------------------------------------GPRLDERD 375 (450)
T ss_dssp EEEEEEEEETTEEEEEEEEEECEEEE----------------------------------------------EEECCSTT
T ss_pred EEEEEEcCCCCcccccceeEEEEEec----------------------------------------------CCceeecc
Confidence 9999997654 334667777776 6666654
Q ss_pred -CcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeee
Q psy670 461 -PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 461 -~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~ 524 (540)
|....+.+|+.++|.|.+.|.|.|.++|+|+|..+..+.. .+.+...|.|.|+|.+.+.-.+.
T Consensus 376 ~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~-~~~v~~~d~G~Y~C~a~N~~G~~ 439 (450)
T 1z7z_I 376 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-SVTVTRDLEGTYLCRARSTQGEV 439 (450)
T ss_dssp SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-CEECCGGGCEEEEEEEEETTEEE
T ss_pred CCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC-eEeEehhhCeEEEEEEEeCCCce
Confidence 3678899999999999999999999999999985544433 23678899999999999764443
No 12
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=6e-43 Score=343.41 Aligned_cols=381 Identities=12% Similarity=0.127 Sum_probs=230.4
Q ss_pred ccCCCeeEEEEEEccCcceee-eEEE---EEeecCCccccCC---CCCCCCCCCCccccCCCeEEEEEEEeecCCCceEE
Q psy670 64 QKSDSGEYKVIAKNKNGEGSS-TVNL---NFSEEDGKLKVPG---GKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIW 136 (540)
Q Consensus 64 ~~~D~G~Y~C~~~~~~~~~~~-~~~l---~v~~~~~~~~i~~---~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W 136 (540)
...|.|.|+|.+.+..+..++ .+.. .+...+..+.... .....+....+.+.+|+++.|.|.+.+.|.+.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W 82 (423)
T 3qs7_E 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW 82 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEE
T ss_pred ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEE
Confidence 356899999999876443321 1111 1111221222111 11122223356789999999999999999999999
Q ss_pred EeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCce
Q psy670 137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216 (540)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~ 216 (540)
++++..+........ ......+|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+.. ...
T Consensus 83 ~~~~~~l~~~~~~~~------~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~p~~~~-~~p 148 (423)
T 3qs7_E 83 VFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN-------TLLYTL-RRP 148 (423)
T ss_dssp EETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC------------CE-EEE
T ss_pred EECCCccCccceecc------ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEec-------Cccccc-cCC
Confidence 999887754322211 122234799999999999999999999999888888888874 333221 112
Q ss_pred eecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee-
Q psy670 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA- 295 (540)
Q Consensus 217 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~- 295 (540)
.....|+.+.|.|.+.|.|.|.|+|++++..+........ .........+ ...|+|.|+|.|.|..|....
T Consensus 149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~-----~~~~~~~~~l---~~~d~G~Y~C~A~N~~G~~~~~ 220 (423)
T 3qs7_E 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESP-----AVVKKEEKVL---HELFGTDIRCCARNELGRECTR 220 (423)
T ss_dssp EEEECSSSSCEEEEEEESSCCEEEEEEC------------------CEEECCSEE---CCCCSSCEEEEEECSSCEEEEE
T ss_pred cEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccc-----ccccccceEE---ecccCeEEEEEEEcCCCCccee
Confidence 2234577788999999999999999998875532110000 0000000111 567999999999999887543
Q ss_pred eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecC--CeeEEE
Q psy670 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKG--DKYHIR 372 (540)
Q Consensus 296 ~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 372 (540)
.+.|.|.. . |.+ .+....+.+|+.+.|.|.+.| .|.+.|.|+++|..+.....+.......+ .....+
T Consensus 221 ~~~l~V~~--~-----p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~ 291 (423)
T 3qs7_E 221 LFTIDLNQ--T-----PQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291 (423)
T ss_dssp CEEEESSS--C-----CCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEE
T ss_pred eEEEEEec--C-----Ccc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEE
Confidence 24444433 1 111 233567889999999999998 67799999999988765433222111111 112237
Q ss_pred EEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeee
Q psy670 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLS 452 (540)
Q Consensus 373 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (540)
|.|.+++.+|+|.|+|.|.|. ...++.|.|..
T Consensus 292 L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~--------------------------------------------- 323 (423)
T 3qs7_E 292 AFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE--------------------------------------------- 323 (423)
T ss_dssp EEESSCCTTTCEEEEEEETTE---EEEEEEEEEES---------------------------------------------
T ss_pred EEEeecCHHHCEEEEEEEecC---CCceEEEEEEe---------------------------------------------
Confidence 999999999999999999997 66777788876
Q ss_pred eeceeecCC--cEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC-----e-EE--EEEEecCCeEEEEEEeeeee
Q psy670 453 VVPVIREVP--KVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN-----K-HV--VHIEQVKDVSMNFELWLGIV 522 (540)
Q Consensus 453 ~~p~i~~~~--~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~-----~-~~--~~~~~~~~g~y~c~~~~~~~ 522 (540)
+|.+...+ ....+.+|+.+.|.|.+.|.|+|.|+|+|+|..|..+. . .. ......|.|.|+|.+.+...
T Consensus 324 -~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G 402 (423)
T 3qs7_E 324 -KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402 (423)
T ss_dssp -SCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTE
T ss_pred -CCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCc
Confidence 55554433 45677889999999999999999999999999996542 2 22 34455789999999987655
Q ss_pred ee
Q psy670 523 EK 524 (540)
Q Consensus 523 ~~ 524 (540)
+.
T Consensus 403 ~~ 404 (423)
T 3qs7_E 403 QF 404 (423)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 13
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=7.3e-43 Score=340.60 Aligned_cols=349 Identities=23% Similarity=0.396 Sum_probs=257.0
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccc-ccCCCeeEEEEEEccCccee-e
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNV-QKSDSGEYKVIAKNKNGEGS-S 84 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~~~~~~~~~~-~ 84 (540)
.++|.+.|.|. |.|+|+|||.++..+..+++... ++ +|.|.+. +.+|+|.|+|.|.|..|... .
T Consensus 27 ~L~C~~~g~P~------p~i~W~k~g~~l~~~~~~~~~~~-~g-------~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~ 92 (384)
T 3kld_A 27 KLSCEVKGNPK------PHIRWKLNGTDVDIGMDFRYSVV-DG-------SLLINNPNKTQDAGTYQCIATNSFGTIVSR 92 (384)
T ss_dssp EECCEEEEESC------CEEEEEETTEECCC----CEEEE-TT-------EEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred EEEeEecCCCC------CEEEEEECCEECcCCCCccEEEE-CC-------EEEEcCCCCcccCEEEEEEEEcCcccEEec
Confidence 47899999998 99999999999976655555443 33 5667665 88999999999999988653 3
Q ss_pred eEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEE
Q psy670 85 TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL 163 (540)
Q Consensus 85 ~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (540)
.+.+.+...+ .+. ........+.+|+.+.|.|... +.|.+.+.|++++..+....+..... ...
T Consensus 93 ~~~l~v~~~~-~~~-------~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~----~~~--- 157 (384)
T 3kld_A 93 EAKLQFAYLE-NFK-------TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ----ETG--- 157 (384)
T ss_dssp CEEEEEEEEC-CCS-------CCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECT----TTC---
T ss_pred ceEEEEeccc-ccc-------cCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEc----CCC---
Confidence 5566654432 111 1112345688999999999763 55778999999998875444432211 111
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCceeEE---EEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEecccCCCeE
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGESNA---NIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCSAKPRPEV 239 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 239 (540)
.|.|.+++.+|+|.|+|.+.|..+.... ...+.+..........|.+ ...+....+.+|+.+.|.|.+.+.|.+.+
T Consensus 158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i 237 (384)
T 3kld_A 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI 237 (384)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence 6999999999999999999998764321 1122222100000112333 23355667788999999999999999999
Q ss_pred EEEeCCE-EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC
Q psy670 240 KWFKADK-LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP 318 (540)
Q Consensus 240 ~W~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~ 318 (540)
.|++++. .+..... . .... ..|.|.+++.+|+|.|+|.|.|..|.......|.|.. +|.+...+
T Consensus 238 ~W~k~~~~~~~~~~~--~--~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~-------~P~~~~~~ 302 (384)
T 3kld_A 238 LWRRADGKPIARKAR--R--HKSN----GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA-------QPNWVQII 302 (384)
T ss_dssp EEEETTCCCCCTTCE--E--CTTS----CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEEECC
T ss_pred EEEeCCCccccccce--e--cCCC----cEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec-------CCccccCC
Confidence 9999544 4432211 1 1111 2699999999999999999999999888888888876 66777777
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
....+..|+.+.|.|.+.|.|.|.|.|+++|..+....++.+ .++ +|.|..+..+|+|.|+|.|.|..|...
T Consensus 303 ~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~----~~~----~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 374 (384)
T 3kld_A 303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQG----TLNITIVNLSDAGMYQCVAENKHGVIF 374 (384)
T ss_dssp CCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEE----ETT----EEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred CceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEE----eCC----EEEEeecChhhCEEEEEEEEeCCceEE
Confidence 788899999999999999999999999999999987666543 122 799999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy670 399 ANLTLNIEM 407 (540)
Q Consensus 399 ~~~~l~V~~ 407 (540)
.++.|.|..
T Consensus 375 ~~a~L~V~~ 383 (384)
T 3kld_A 375 SSAELSVIA 383 (384)
T ss_dssp EEEEEEEC-
T ss_pred eceEEEEec
Confidence 999998853
No 14
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=1.7e-42 Score=341.16 Aligned_cols=354 Identities=22% Similarity=0.374 Sum_probs=265.1
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEc----ccccCCCeeEEEEEEccCcce
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIK----NVQKSDSGEYKVIAKNKNGEG 82 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~D~G~Y~C~~~~~~~~~ 82 (540)
.+.|.+.|.|. +.|.|+|+|..+......++.....+ .+|.|. +++.+|+|.|+|.+.|..|..
T Consensus 36 ~l~C~~~g~p~------~~v~W~k~g~~l~~~~~~~~~~~~~~------~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~ 103 (404)
T 3p3y_A 36 LIECEAKGNPA------PSFHWTRNSRFFNIAKDPRVSMRRRS------GTLVIDFRSGGRPEEYEGEYQCFARNKFGTA 103 (404)
T ss_dssp CCCEEECCSSC------CEEEEEETTEECCGGGCSSCBCCSSS------CCCBCCCTTTCCTTSSCEEEEEEEECSSCEE
T ss_pred EEEEEecCCCC------CeEEEEECCEEeeeecCCcceEecCC------ceEEEEeccCCCCccCCEEEEEEEEcCCCeE
Confidence 46799999988 99999999998865433333322222 355554 889999999999999998876
Q ss_pred e-eeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEe-ecCCCceEEEEeecCcc
Q psy670 83 S-STVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKV-IEDTGRIKMSKKSIGKD 159 (540)
Q Consensus 83 ~-~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~ 159 (540)
. ..+.|.|...+..+ .....+..+.+|+.+.|.|.+ .+.|.+.+.|++++.. +....+..... +
T Consensus 104 ~s~~~~l~V~~~p~~~--------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~ 170 (404)
T 3p3y_A 104 LSNRIRLQVSKSPLWP--------KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH-----N 170 (404)
T ss_dssp EEEEEEEEECCCCCCC--------CCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECT-----T
T ss_pred eeeeEEEEEeccCccc--------cCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcC-----C
Confidence 3 56777776544111 122344678899999999999 7889999999998744 33333333221 1
Q ss_pred eEEEEEEEcCCCCCC-CeEEEEEEEcCCcee---EEEEEEEEecCcCCCCCCCeeccCC---ceeecCCCCeEEEEEEec
Q psy670 160 TYLLRLEINNPTKDD-GGNYRCNACNSIGES---NANIALNFQGGENGAGFAPSFIEKP---RIIPNESGTLIQMKCKCS 232 (540)
Q Consensus 160 ~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~ 232 (540)
. .|.|.++..+| +|.|+|.+.+..+.. ...+.+.+.........+|.+.... ....+.+|+.+.|.|.+.
T Consensus 171 ~---~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~ 247 (404)
T 3p3y_A 171 G---DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS 247 (404)
T ss_dssp S---CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBC
T ss_pred C---cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEEC
Confidence 1 69999999999 699999999887653 2235556654332222344443322 345677899999999999
Q ss_pred ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCC
Q psy670 233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPP 312 (540)
Q Consensus 233 ~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p 312 (540)
+.|.+.+.|++++..+...... ... .. ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|.. +|
T Consensus 248 g~p~~~v~W~~~~~~~~~~~~~-~~~--~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p 313 (404)
T 3p3y_A 248 GVPTPDIAWYKKGGDLPSDKAK-FEN--FN----KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-------AP 313 (404)
T ss_dssp CSSCCEEEEEETTBCCCTTTEE-EEG--GG----TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE-------EE
T ss_pred CCCCCcEEEEECCEECCCCccc-ccc--cC----ceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC-------CC
Confidence 9999999999999887654431 111 11 2799999999999999999999999888888888877 66
Q ss_pred eEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392 (540)
Q Consensus 313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 392 (540)
.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......... ..+. +|.|.++..+|+|.|+|.|.|
T Consensus 314 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~-~~~~----~L~i~~v~~~d~G~Y~C~a~N 388 (404)
T 3p3y_A 314 YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE-VAGD----TIIFRDTQISSRAVYQCNTSN 388 (404)
T ss_dssp EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEE-EETT----EEEESSCCSSCCCEEEEEEEE
T ss_pred eeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEE-ecCC----EEEEeecCHHHCEEEEEEEEe
Confidence 77777877889999999999999999999999999999987654211111 1222 799999999999999999999
Q ss_pred CCeeeEEEEEEEEEE
Q psy670 393 FHGELNANLTLNIEM 407 (540)
Q Consensus 393 ~~g~~~~~~~l~V~~ 407 (540)
..|....++.|.|.+
T Consensus 389 ~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 389 EHGYLLANAFVSVLD 403 (404)
T ss_dssp TTEEEEEEEEEEEC-
T ss_pred CCCcEEEEEEEEEEe
Confidence 999999999998864
No 15
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=1.4e-45 Score=393.87 Aligned_cols=444 Identities=18% Similarity=0.238 Sum_probs=53.3
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecC--ccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQD--QSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~ 85 (540)
+.|.+.|.+. +.+.+.|++++..+............. .......++|.|.+++.+|+|.|+|.+.|..+..+..
T Consensus 244 L~C~~~~~~~----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 319 (772)
T 3v2a_R 244 LNCTARTELN----VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319 (772)
T ss_dssp EEEEEEECTT----CCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEE
T ss_pred EEEEEecCCC----CceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEE
Confidence 5688887432 237899999999876543332211100 0122355799999999999999999999998887888
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEE
Q psy670 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL 165 (540)
Q Consensus 86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 165 (540)
+.|.|...+ .+.+.. .......+.+|+.+.|.|.+.++|.+.+.|+++|..+....... ....|
T Consensus 320 ~~l~V~~~p-~~~~~~-----~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~----------~~~~L 383 (772)
T 3v2a_R 320 TFVRVHEKP-FVAFGS-----GMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK----------AGHVL 383 (772)
T ss_dssp EEEEEECCC-C---------------------------------------------------------------------
T ss_pred EEEEEeCCC-eeEecc-----CCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc----------cceeE
Confidence 888887654 221110 01123467899999999999999999999999998886532221 12389
Q ss_pred EEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEecccCCCe-E
Q psy670 166 EINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKCSAKPRPE-V 239 (540)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~-v 239 (540)
.|.+++.+|+|.|+|.+.|..|.. +..+.|.|.. +|.+... .....+.+|+.+.|.|.+.+.|.+. +
T Consensus 384 ~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~-------~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v 456 (772)
T 3v2a_R 384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV-------PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 456 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec-------CCcccccccCCCccccCCCCcEEEEeEeccCCCCcEE
Confidence 999999999999999999988765 4455566653 4444322 1112367899999999999999986 9
Q ss_pred EEEeCCEEeec--------------------------cCc-----eEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670 240 KWFKADKLVKE--------------------------SSK-----IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288 (540)
Q Consensus 240 ~W~~~~~~l~~--------------------------~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 288 (540)
.|++++..... ... .............+.|.|.++ +|+|.|+|.|.|
T Consensus 457 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N 534 (772)
T 3v2a_R 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVN 534 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEc
Confidence 99997432100 000 000000111122246777776 689999999999
Q ss_pred CCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE-------
Q psy670 289 EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN------- 361 (540)
Q Consensus 289 ~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~------- 361 (540)
..|.....+.+.|.. +|.+...+. ..+.+|+.+.|.|.+.+.|.+.+.|+++|..+.........
T Consensus 535 ~~g~~~~~~~l~V~~-------~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 606 (772)
T 3v2a_R 535 KVGRGERVISFHVTR-------GPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeEEEEEEC-------CceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccc
Confidence 999888777777765 444443333 34678999999999999999999999998766433221110
Q ss_pred ---------EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE--EEEEEEEEEEEEEEEeeecCcceeeeeeeeee
Q psy670 362 ---------VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN--ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430 (540)
Q Consensus 362 ---------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (540)
....+......|.|.+++.+|+|.|+|.|.|..+... ....|.|..
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~----------------------- 663 (772)
T 3v2a_R 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE----------------------- 663 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc-----------------------
Confidence 0011222233699999999999999999999665433 334444432
Q ss_pred cccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEE--------
Q psy670 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV-------- 502 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~-------- 502 (540)
..+|.|...+.+..+.+|+.++|.|.+.|.|+|+|+|+|+|..+..+.+..
T Consensus 664 ---------------------~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L 722 (772)
T 3v2a_R 664 ---------------------RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 722 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEE
Confidence 127888877777889999999999999999999999999999887653221
Q ss_pred --EEEEecCCeEEEEEEeeeeeeeeCCeeEEEE
Q psy670 503 --VHIEQVKDVSMNFELWLGIVEKRGPSIKIIY 533 (540)
Q Consensus 503 --~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~ 533 (540)
..+...|.|.|+|.+.+....... ...+.+
T Consensus 723 ~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V 754 (772)
T 3v2a_R 723 TIRRVRKEDEGLYTCQACSVLGCAKV-EAFFII 754 (772)
T ss_dssp ---------------------------------
T ss_pred EECcCCHHHCEEEEEEEEeCCcceeE-EEEEEE
Confidence 246668899999999875554443 334433
No 16
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=1.6e-41 Score=334.21 Aligned_cols=349 Identities=21% Similarity=0.369 Sum_probs=265.8
Q ss_pred cceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccc-----ccCCCeeEEEEEEccCcc
Q psy670 8 KSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNV-----QKSDSGEYKVIAKNKNGE 81 (540)
Q Consensus 8 ~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~D~G~Y~C~~~~~~~~ 81 (540)
+.|.+.| .|. +.+.|+|+|..+......+.....++ +|.|.++ +.+|+|.|+|.+.+..+.
T Consensus 41 L~C~~~~~~p~------~~v~W~k~g~~~~~~~~~~~~~~~~~-------~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~ 107 (403)
T 3laf_A 41 LNCSAESDRGV------PVIKWKKDGLILALGMDDRKQQLPNG-------SLLIQNILHSRHHKPDEGLYQCEASLGDSG 107 (403)
T ss_dssp ECCEEECTTCC------CEEEEEETTEECCTTSCTTEEECTTS-------CEEECSCCCBTTBCSSCEEEEEEEECGGGC
T ss_pred EEEEcCCCCCC------ceEEEEECCEECccCCcccEEEecCC-------cEEEeeeeccCCCCCcceEEEEEEEeCCCc
Confidence 6688886 455 88999999999875544344444444 6777777 778999999999965443
Q ss_pred e--eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC---CceEEEEeec
Q psy670 82 G--SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT---GRIKMSKKSI 156 (540)
Q Consensus 82 ~--~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~~ 156 (540)
. +..+.|.|..++ .+. .......+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+....
T Consensus 108 ~~~s~~~~l~v~~p~-~~~--------~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---- 174 (403)
T 3laf_A 108 SIISRTAKVMVAGPL-RFL--------SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL---- 174 (403)
T ss_dssp EEECCCEEEEECCCC-EEC--------SCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEEC----
T ss_pred cEEEEEEEEEecCCC-ccc--------cCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEc----
Confidence 3 345566665432 111 1123456889999999999999999999999999877432 222211
Q ss_pred CcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC
Q psy670 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235 (540)
Q Consensus 157 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 235 (540)
... .|.|.+++.+|+|.|+|.+.+..+.. ...+.+.|...+... .++.+...+....+.+|+.+.|.|.+.+.|
T Consensus 175 -~~~---~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p 249 (403)
T 3laf_A 175 -PSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH-RQLYFLQRPSNVIAIEGKDAVLECCVSGYP 249 (403)
T ss_dssp -TTS---CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCC-EEEEEEECCCCEEEETTSCEEECCEEEEES
T ss_pred -CCc---eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcc-cCceEecCCCceEecCCCcEEEEEEcCCCC
Confidence 111 79999999999999999999987653 345666666432210 122344456667778899999999999999
Q ss_pred CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315 (540)
Q Consensus 236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~ 315 (540)
.+.+.|++++..+............ ..|.|.+++.+|+|.|+|.+.|..|.....+.+.|.. +|.+.
T Consensus 250 ~~~~~W~~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~ 316 (403)
T 3laf_A 250 PPSFTWLRGEEVIQLRSKKYSLLGG------SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-------PPWFL 316 (403)
T ss_dssp CCEEEEEETTEECCCSSSSEEEETT------TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEE
T ss_pred CCeEEEEECCeeccCCCceEEECCc------cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC-------CCcEe
Confidence 9999999999988654433222211 1699999999999999999999998888888888876 67777
Q ss_pred eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
..+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+......... .+. .|.|.++..+|+|.|+|.|.|..|
T Consensus 317 ~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---~~~----~L~i~~v~~~d~G~Y~C~a~N~~G 389 (403)
T 3laf_A 317 NHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGS----NLRILGVVKSDEGFYQCVAENEAG 389 (403)
T ss_dssp ECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE---TTT----EEEESSCCGGGCEEEEEEEEETTE
T ss_pred ecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe---cCc----cEEEeccccccCEEEEEEEEcCCc
Confidence 7777788899999999999999999999999999998776654432 222 799999999999999999999999
Q ss_pred eeEEEEEEEEEE
Q psy670 396 ELNANLTLNIEM 407 (540)
Q Consensus 396 ~~~~~~~l~V~~ 407 (540)
....++.|.|..
T Consensus 390 ~~~~~~~l~V~~ 401 (403)
T 3laf_A 390 NAQSSAQLIVPK 401 (403)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEEEeC
Confidence 999999998875
No 17
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=6.1e-41 Score=329.16 Aligned_cols=344 Identities=13% Similarity=0.165 Sum_probs=233.4
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.+.|.+.|.|. +.|.|++++..+.....+.. +. .+..+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 67 ~L~C~v~g~P~------p~i~W~~~~~~l~~~~~~~~----~~---~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 133 (423)
T 3qs7_E 67 TLQVLVDAPGN------ISCLWVFKHSSLNCQPHFDL----QN---RGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (423)
T ss_dssp EEEEECSCCSS------CEEEEEETTEEECCCCBC------------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred EEEEEEEcCCC------CeEEEEECCCccCccceecc----cc---ceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEE
Confidence 36799999887 99999999988764333211 11 1235799999999999999999999998877777
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 166 (540)
.|.|...+ .+ .+..+..+..|+.+.|.|.+.|.|.|.|.|+|++..+...... ........ ...
T Consensus 134 ~l~V~~~p---~~-------~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~-~~~~~~~~-----~~~ 197 (423)
T 3qs7_E 134 TVSIRNTL---LY-------TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-SPAVVKKE-----EKV 197 (423)
T ss_dssp EEEEC---------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEEC-----CSE
T ss_pred EEEEecCc---cc-------cccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccc-cccccccc-----ceE
Confidence 77776432 11 1123445667888999999999999999999988755321100 00000000 011
Q ss_pred EcCCCCCCCeEEEEEEEcCCceeEE-EEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeC
Q psy670 167 INNPTKDDGGNYRCNACNSIGESNA-NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKA 244 (540)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~ 244 (540)
+ ...|+|.|+|.|.|..|.... .+.|.|.. .|.+ .+....+.+|+.+.|.|.+.+ .|.+.+.|+++
T Consensus 198 l---~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-------~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~ 265 (423)
T 3qs7_E 198 L---HELFGTDIRCCARNELGRECTRLFTIDLNQ-------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265 (423)
T ss_dssp E---CCCCSSCEEEEEECSSCEEEEECEEEESSS-------CCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEES
T ss_pred E---ecccCeEEEEEEEcCCCCcceeeEEEEEec-------CCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEEC
Confidence 1 578999999999999987643 46666654 2222 233667788999999999998 77799999999
Q ss_pred CEEeeccCceEEEEecCC--CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC--ce
Q psy670 245 DKLVKESSKIKIIVNEQD--DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP--KI 320 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~--~~ 320 (540)
+..+.............. ......|.|.+++.+|+|.|+|.|.|. ....+.|.|.. +|.+...+ ..
T Consensus 266 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~-------~p~i~~~~~~~~ 335 (423)
T 3qs7_E 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE-------KGFINATNSSED 335 (423)
T ss_dssp SSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEES-------SCEEEEC---CE
T ss_pred CEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEe-------CCcceEcCCCcc
Confidence 988765432211111111 222347999999999999999999987 56667777765 45554433 34
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
..+.+|+.+.|.|.+.|.|.|.|.|+++|..+....... .+.. .+.......+|+|.|+|.|.|..|....+
T Consensus 336 ~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~---~~~~~~~~~~D~G~YtC~A~N~~G~~~~s 407 (423)
T 3qs7_E 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-----DNGY---SISKFCNHKHQPGEYIFHAENDDAQFTKM 407 (423)
T ss_dssp ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-----SSSS---EEEEECCCTTCCSCEEEEEEETTEEEEEE
T ss_pred EEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc-----cCCc---EEEEEecccccCEEEEEEEEcCCceEEEE
Confidence 567789999999999999999999999999986643100 0010 22224456789999999999999999999
Q ss_pred EEEEEEEEE
Q psy670 401 LTLNIEMVR 409 (540)
Q Consensus 401 ~~l~V~~~~ 409 (540)
+.|.|...|
T Consensus 408 ~~L~v~~~p 416 (423)
T 3qs7_E 408 FTLNIRSGT 416 (423)
T ss_dssp EEEC-----
T ss_pred EEEEEecCC
Confidence 999998754
No 18
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=3.3e-41 Score=329.29 Aligned_cols=345 Identities=24% Similarity=0.362 Sum_probs=261.1
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc-CCCeeEEEEEEccCccee-e
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-SDSGEYKVIAKNKNGEGS-S 84 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~-~ 84 (540)
.+.|.+.|.|. +.|.|+|+|..+..+...++... ++ +|.|.++.. +|+|.|+|.+.|..|... .
T Consensus 26 ~l~C~~~g~p~------~~v~W~k~g~~~~~~~~~~~~~~-~~-------~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~ 91 (382)
T 1cs6_A 26 TLTCRARANPP------ATYRWKMNGTELKMGPDSRYRLV-AG-------DLVISNPVKAKDAGSYQCVATNARGTVVSR 91 (382)
T ss_dssp EECCEEEEESC------CEEEEEETTEECCCSTTSSEEEE-TT-------EEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred EEEEEecCCCC------CEEEEEECCEECCcCCCccEEee-CC-------eEEEecccccccCEEEEEEEEcCCcEEEec
Confidence 36799999888 89999999999876533333332 33 799999997 999999999999888653 3
Q ss_pred eEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeec--CCCceEEEEeecCcceE
Q psy670 85 TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIE--DTGRIKMSKKSIGKDTY 161 (540)
Q Consensus 85 ~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~ 161 (540)
.+.|.|...+. +. ........+.+|+.+.|.|.+ .+.|.+.+.|++++..+. ...+..... ..
T Consensus 92 ~~~l~v~~~~~-~~-------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~----~~-- 157 (382)
T 1cs6_A 92 EASLRFGFLQE-FS-------AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ----TT-- 157 (382)
T ss_dssp CEEEEEEEECC-CC-------SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT----TT--
T ss_pred ceEEEeecccc-cc-------ccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEec----Cc--
Confidence 56666664431 11 112345678899999999996 567889999999987643 222222111 11
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcCCceeE-----EEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEecccC
Q psy670 162 LLRLEINNPTKDDGGNYRCNACNSIGESN-----ANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAKP 235 (540)
Q Consensus 162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-----~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p 235 (540)
..|.|.+++.+|+|.|+|.+.+..+... ..+.+.+..... ...+|.+.. .+....+.+|+.+.|.|.+.+.|
T Consensus 158 -~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~-~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p 235 (382)
T 1cs6_A 158 -GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA-RQYAPSIKAKFPADTYALTGQMVTLECFAFGNP 235 (382)
T ss_dssp -CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC-CCEEEEEEECCCSEEEEETTCCEEEECEEEEES
T ss_pred -eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhc-ccCCCceeccCCCceEEeCCCeEEEEEEEccCC
Confidence 1799999999999999999998764321 224444432111 112444433 34567788999999999999999
Q ss_pred CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315 (540)
Q Consensus 236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~ 315 (540)
.+.+.|++++..+..... .. ...|.|.+++.+|+|.|+|.+.|..|.....+.+.|.. +|.+.
T Consensus 236 ~~~i~W~~~~~~~~~~~~------~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~ 298 (382)
T 1cs6_A 236 VPQIKWRKLDGSQTSKWL------SS----EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-------QPDWL 298 (382)
T ss_dssp CCEEEEEECCSCCSCCCS------BS----SSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEE
T ss_pred CCEEEEEECCcccccEEe------cC----CcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec-------CCCcc
Confidence 999999998876543110 01 12799999999999999999999999888888888876 66777
Q ss_pred eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
..+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....++... ++ .|.|.++..+|+|.|+|.|.|..|
T Consensus 299 ~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~~----~L~i~~v~~~d~G~Y~C~a~N~~G 370 (382)
T 1cs6_A 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GG----ELRFSKLVLEDSGMYQCVAENKHG 370 (382)
T ss_dssp ECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TT----EEEESSCCGGGCEEEEEEEEETTE
T ss_pred cCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE----CC----EEEECcCCcccCEEEEEEEEeCCC
Confidence 7777788999999999999999999999999999999877654431 22 799999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy670 396 ELNANLTLNIE 406 (540)
Q Consensus 396 ~~~~~~~l~V~ 406 (540)
....++.|.|.
T Consensus 371 ~~~~~~~l~V~ 381 (382)
T 1cs6_A 371 TVYASAELTVQ 381 (382)
T ss_dssp EEEEEEEEEEE
T ss_pred eEEEEEEEEEe
Confidence 99999999885
No 19
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-40 Score=324.27 Aligned_cols=344 Identities=20% Similarity=0.341 Sum_probs=260.1
Q ss_pred CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCC-----CCCCCeEEEEEEEc
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP-----TKDDGGNYRCNACN 184 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~ 184 (540)
...+.+|+.++|.|.+.+ .|.+.+.|+|+|..+............ +. .|.|.++ +.+|+|.|+|.+.+
T Consensus 30 ~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~---~~---~l~i~~~~~~~~~~~D~G~Y~C~~~~ 103 (403)
T 3laf_A 30 DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLP---NG---SLLIQNILHSRHHKPDEGLYQCEASL 103 (403)
T ss_dssp CEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECT---TS---CEEECSCCCBTTBCSSCEEEEEEEEC
T ss_pred ceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEec---CC---cEEEeeeeccCCCCCcceEEEEEEEe
Confidence 456789999999999976 577899999999988643221111111 11 5666666 77899999999996
Q ss_pred CCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCce-EEEEecC
Q psy670 185 SIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI-KIIVNEQ 261 (540)
Q Consensus 185 ~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~-~~~~~~~ 261 (540)
..+.. ...+.+.|.. ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ..... .
T Consensus 104 ~~~~~~~s~~~~l~v~~-------p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~ 175 (403)
T 3laf_A 104 GDSGSIISRTAKVMVAG-------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL-P 175 (403)
T ss_dssp GGGCEEECCCEEEEECC-------CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEEC-T
T ss_pred CCCccEEEEEEEEEecC-------CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEc-C
Confidence 54332 4456666664 566666677778889999999999999999999999999877532211 11111 1
Q ss_pred CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC
Q psy670 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340 (540)
Q Consensus 262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~ 340 (540)
.+ .|.|.+++.+|+|.|+|.+.|..+.. .....+.|...+... .++.+...+....+.+|+.+.|.|.+.+.|.
T Consensus 176 ~~----~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 250 (403)
T 3laf_A 176 SG----ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH-RQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250 (403)
T ss_dssp TS----CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCC-EEEEEEECCCCEEEETTSCEEECCEEEEESC
T ss_pred Cc----eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcc-cCceEecCCCceEecCCCcEEEEEEcCCCCC
Confidence 11 69999999999999999999987653 345666666533211 1224555666778889999999999999999
Q ss_pred CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcc
Q psy670 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKG 420 (540)
Q Consensus 341 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~ 420 (540)
+.+.|++++..+......... ..+. .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 251 ~~~~W~~~~~~~~~~~~~~~~--~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------------- 311 (403)
T 3laf_A 251 PSFTWLRGEEVIQLRSKKYSL--LGGS----NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------------- 311 (403)
T ss_dssp CEEEEEETTEECCCSSSSEEE--ETTT----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------------
T ss_pred CeEEEEECCeeccCCCceEEE--CCcc----EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC-------------
Confidence 999999999988754432211 1222 799999999999999999999999999999999987
Q ss_pred eeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCe
Q psy670 421 IVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNK 500 (540)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~ 500 (540)
+|.+...+....+.+|+.++|.|.+.|.|.+.++|+|+|..+..+..
T Consensus 312 ---------------------------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~ 358 (403)
T 3laf_A 312 ---------------------------------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDY 358 (403)
T ss_dssp ---------------------------------EEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSS
T ss_pred ---------------------------------CCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCc
Confidence 77887777888899999999999999999999999999998865543
Q ss_pred EEE---------EEEecCCeEEEEEEeeeeeeee
Q psy670 501 HVV---------HIEQVKDVSMNFELWLGIVEKR 525 (540)
Q Consensus 501 ~~~---------~~~~~~~g~y~c~~~~~~~~~~ 525 (540)
..+ .+...|.|.|+|.+.+...+..
T Consensus 359 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 392 (403)
T 3laf_A 359 FQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQ 392 (403)
T ss_dssp EEEETTTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEecCccEEEeccccccCEEEEEEEEcCCceEE
Confidence 322 3455789999999987554443
No 20
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.4e-40 Score=326.46 Aligned_cols=348 Identities=23% Similarity=0.384 Sum_probs=254.8
Q ss_pred cceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee-ee
Q psy670 8 KSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS-ST 85 (540)
Q Consensus 8 ~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-~~ 85 (540)
+.|.+.| .|. +.+.|+|+|..+....+ .+.....+ ++|.|.+++.+|+|.|+|.+.|..|... ..
T Consensus 26 l~C~~~~~~p~------~~v~W~k~g~~~~~~~~-~~~~~~~~------~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~ 92 (395)
T 1bih_A 26 LECIIEGNDQG------VKYSWKKDGKSYNWQEH-NAALRKDE------GSLVFLRPQASDEGHYQCFAETPAGVASSRV 92 (395)
T ss_dssp ECCCEESCCSS------CEEEEEESSSBCCTTTT-TEEECTTS------CCEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred EEEEEecCCCC------ceEEEEECCcCcccccc-eEEEecCC------ceEEEecCCCCCCcEEEEEEEeCCCeEEeEE
Confidence 6698888 676 99999999999876653 22222222 4899999999999999999999887654 34
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCC---EeecC----CCceEEEEeecC
Q psy670 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGT---KVIED----TGRIKMSKKSIG 157 (540)
Q Consensus 86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~---~~~~~----~~~~~~~~~~~~ 157 (540)
+.|.|...+ . +.+......+.+|+.+.|.|.+ .+.|.+.+.|++++ .+... ..+.....
T Consensus 93 ~~l~v~~~~-~--------p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (395)
T 1bih_A 93 ISFRKTYLI-A--------SPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP---- 159 (395)
T ss_dssp EEEEEEEEE-C--------CCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT----
T ss_pred EEEEEEEee-c--------CCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcC----
Confidence 556554332 1 1112224567799999999996 78899999999976 22111 22222211
Q ss_pred cceEEEEEEEcCCCCCCCe---EEEEEEEcCCceeEEEEEEEEe---cCcC---CCCCCCeeccCCceeecCCCCeEEEE
Q psy670 158 KDTYLLRLEINNPTKDDGG---NYRCNACNSIGESNANIALNFQ---GGEN---GAGFAPSFIEKPRIIPNESGTLIQMK 228 (540)
Q Consensus 158 ~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~l~v~---~~~~---~~~~~p~~~~~~~~~~~~~g~~~~l~ 228 (540)
+. .|.|.+++.+|+| .|+|.+.+..+.........+. .... .....|.+ .+....+.+|+.+.|.
T Consensus 160 -~~---~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~ 233 (395)
T 1bih_A 160 -DG---NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIY 233 (395)
T ss_dssp -TS---CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEE
T ss_pred -CC---cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEE
Confidence 11 6999999999999 9999999988764333222211 1100 00112333 2445667889999999
Q ss_pred EEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee-eEEEEEeeccCC
Q psy670 229 CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA-NLNLNIEAEAEP 307 (540)
Q Consensus 229 C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~~~~~ 307 (540)
|.+.+.|.+.+.|++++..+.......+....... ...|.|.+++.+|+|.|+|.+.|..|.... .+.|.|..
T Consensus 234 C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~---- 307 (395)
T 1bih_A 234 CMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS--GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS---- 307 (395)
T ss_dssp EEEECSSCCCCEEEETTEECCCCTTSSEESCSSST--TSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE----
T ss_pred EEeccCCCCeEEEEECCEEcCCCCceeEEEEecCC--CceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc----
Confidence 99999999999999999988654332222111111 126999999999999999999999888655 77888876
Q ss_pred CCCCCeEEeCCce-EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670 308 EGDPPTFIEKPKI-RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386 (540)
Q Consensus 308 ~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 386 (540)
+|.+...+.. ..+.+|+.+.|.|.+.|.|.+.+.|+++|..+... ++.. .++ .|.|.++..+|+|.|
T Consensus 308 ---~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~----~~~----~L~i~~~~~~d~G~Y 375 (395)
T 1bih_A 308 ---APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV----TDS----GLVIKGVKNGDKGYY 375 (395)
T ss_dssp ---EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE----ETT----EEEESSCCSTTCEEE
T ss_pred ---CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEE----ECC----EEEEeeCCcccCEEE
Confidence 6677776665 77889999999999999999999999999998654 3322 122 799999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEE
Q psy670 387 KCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l~V 405 (540)
+|.|.|..|....++.|.|
T Consensus 376 ~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 376 GCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEccCCCceEEEEEEE
Confidence 9999999999999888877
No 21
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=2.7e-40 Score=323.54 Aligned_cols=337 Identities=19% Similarity=0.318 Sum_probs=249.5
Q ss_pred ccceeeeCcceeEEeecceeeeee-cCeecccCCceEEEEecCccceeeEEEEEEcccccCC------CeeEEEEEEccC
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYH-KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD------SGEYKVIAKNKN 79 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D------~G~Y~C~~~~~~ 79 (540)
.+.|.+.|.|. +.|+|+| ||..+....+++.. ..++ +|.|.+++.+| +|.|+|.+.|..
T Consensus 23 ~l~C~~~g~p~------p~v~W~k~~g~~~~~~~~~~~~-~~~~-------~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~ 88 (388)
T 2v5m_A 23 EIECKASGNPM------PEIIWIRSDGTAVGDVPGLRQI-SSDG-------KLVFPPFRAEDYRQEVHAQVYACLARNQF 88 (388)
T ss_dssp EEECEEEEESC------CEEEEEETTSCBCCCBTTTBEE-CSTT-------EEEECCCCGGGCCHHHHEEEEEEEEEETT
T ss_pred EEEEECCCCCC------CEEEEEcCCCCccccCCCceEE-cCCc-------eEEecccChhhccccccCceEEEEEEccC
Confidence 46799999888 9999999 88888765444332 2344 79999999997 999999999998
Q ss_pred cce-eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCC---CceEEEeCCEeecC-----CCceE
Q psy670 80 GEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPM---PDIIWYQGTKVIED-----TGRIK 150 (540)
Q Consensus 80 ~~~-~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~-----~~~~~ 150 (540)
|.. +..+.|.+...+ .+. .......+.+|+.++|.|.+.+.+. +.+.|++++..+.. ..+..
T Consensus 89 g~~~s~~~~v~v~~~p-~~~--------~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 159 (388)
T 2v5m_A 89 GSIISRDVHVRAVVAQ-YYE--------ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 159 (388)
T ss_dssp EEEECCCEEEEEECCC-CCC--------CBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEE
T ss_pred CeEEecceEEEEcccc-ccc--------cCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEE
Confidence 864 356666665433 111 1123456889999999999977653 68999999876632 12222
Q ss_pred EEEeecCcceEEEEEEEcCCCCCCC-eEEEEEEEcCCcee-EE---EEEEEEecCcCCCCCCCeec-cCCceeecCCCCe
Q psy670 151 MSKKSIGKDTYLLRLEINNPTKDDG-GNYRCNACNSIGES-NA---NIALNFQGGENGAGFAPSFI-EKPRIIPNESGTL 224 (540)
Q Consensus 151 ~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~~-~~---~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~ 224 (540)
... + ..|.|.+++.+|+ |.|+|.+.+..+.. .. ...+.|...... ..|.+. .......+.+|+.
T Consensus 160 ~~~-----~---~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~--~~p~~~~~~~~~~~v~~G~~ 229 (388)
T 2v5m_A 160 VLP-----S---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS--SAPRTPALVQKPLELMVAHT 229 (388)
T ss_dssp ECT-----T---SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC--EEEECCSSCCCCEEEETTSC
T ss_pred Ecc-----C---CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcC--CCCcCccccCCceEEeeCCc
Confidence 211 1 1799999999999 99999999875432 21 124455432110 011111 1122345678999
Q ss_pred EEEEEEecccCCCeEEEEeCCEEee------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670 225 IQMKCKCSAKPRPEVKWFKADKLVK------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298 (540)
Q Consensus 225 ~~l~C~~~~~p~~~v~W~~~~~~l~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 298 (540)
+.|.|.+.++|.+.+.|++++..+. ...+... . ...|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 230 v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 301 (388)
T 2v5m_A 230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ--V------SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301 (388)
T ss_dssp EEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE--E------TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEECCCCCCCEEEEEecCCCCcccccccccCceec--c------cCEEEECcCCHHHCeEEEEEEecCCCceeEEEE
Confidence 9999999999999999999753221 1112111 1 127999999999999999999999998888888
Q ss_pred EEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCC
Q psy670 299 LNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378 (540)
Q Consensus 299 l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 378 (540)
|.|.. +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..... .|.|.++
T Consensus 302 l~V~~-------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~--------------~L~i~~v 360 (388)
T 2v5m_A 302 LTVTA-------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES--------------VLRIESV 360 (388)
T ss_dssp EEEEE-------EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS--------------EEEESSC
T ss_pred EEEeC-------CCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCCC--------------EEEEecC
Confidence 88876 55666667777889999999999999999999999999998865432 7999999
Q ss_pred CCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 379 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
..+|+|.|+|.|.|..|....++.|.|
T Consensus 361 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 361 KKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred ChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 999999999999999999999888876
No 22
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.1e-39 Score=318.25 Aligned_cols=335 Identities=19% Similarity=0.318 Sum_probs=242.1
Q ss_pred cCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCC-CCCCCeEEEEEEEcCCcee-EEE
Q psy670 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP-TKDDGGNYRCNACNSIGES-NAN 192 (540)
Q Consensus 115 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~-~~~ 192 (540)
.+|+.+.|.|.+.|.|.+.|.|+|+|..+......+.... .. .|.|.+. +.+|+|.|+|.|.|..|.. +..
T Consensus 21 ~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~---~g----~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 93 (384)
T 3kld_A 21 SEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV---DG----SLLINNPNKTQDAGTYQCIATNSFGTIVSRE 93 (384)
T ss_dssp CSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEE---TT----EEEEESCCHHHHCEEEEEEEEETTEEEECCC
T ss_pred CCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEE---CC----EEEEcCCCCcccCEEEEEEEEcCcccEEecc
Confidence 4899999999999999999999999999865433322211 11 5777665 7889999999999998874 334
Q ss_pred EEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 193 IALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 193 ~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+.+... +.+. .......+.+|+.+.|.|.+. +.|.+.+.|++++..+....+... ....+ .|.
T Consensus 94 ~~l~v~~~-------~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~----~L~ 160 (384)
T 3kld_A 94 AKLQFAYL-------ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETG----NLY 160 (384)
T ss_dssp EEEEEEEE-------CCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEE--CTTTC----CEE
T ss_pred eEEEEecc-------cccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEE--EcCCC----cEE
Confidence 55555431 1121 123345677899999999875 467789999999988764443322 11111 599
Q ss_pred EeCCCCCCcEEEEEEEEcCCCCeee---eEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEccCCCeEEEE
Q psy670 271 ITDPIGPDSGTYRCNVKNEFGESNA---NLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~~~~~---~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~ 346 (540)
|.+++.+|+|.|+|.+.|..+.... ...+.+.........+|.+ ...+....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus 161 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~ 240 (384)
T 3kld_A 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240 (384)
T ss_dssp ESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEE
T ss_pred EeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEE
Confidence 9999999999999999998765421 1222222110000112222 33456677889999999999999999999999
Q ss_pred ECC-EEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeee
Q psy670 347 HEG-KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKM 425 (540)
Q Consensus 347 ~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~ 425 (540)
+++ ..+...... ...+. .|.|.+++.+|+|.|+|.|.|..|....+..|.|..
T Consensus 241 k~~~~~~~~~~~~----~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~------------------ 294 (384)
T 3kld_A 241 RADGKPIARKARR----HKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------------------ 294 (384)
T ss_dssp ETTCCCCCTTCEE----CTTSC----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------------------
T ss_pred eCCCcccccccee----cCCCc----EEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec------------------
Confidence 954 444332211 11122 799999999999999999999999998889998887
Q ss_pred eeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE--
Q psy670 426 GLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-- 503 (540)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~-- 503 (540)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|+++|+|+|.++..+.++.+
T Consensus 295 ----------------------------~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~ 346 (384)
T 3kld_A 295 ----------------------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ 346 (384)
T ss_dssp ----------------------------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEET
T ss_pred ----------------------------CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeC
Confidence 77777777788899999999999999999999999999999876554332
Q ss_pred ------EEEecCCeEEEEEEeeeeee
Q psy670 504 ------HIEQVKDVSMNFELWLGIVE 523 (540)
Q Consensus 504 ------~~~~~~~g~y~c~~~~~~~~ 523 (540)
.+...|.|.|+|.+.+.--.
T Consensus 347 ~~L~i~~v~~~D~G~Y~C~A~N~~G~ 372 (384)
T 3kld_A 347 GTLNITIVNLSDAGMYQCVAENKHGV 372 (384)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CEEEEeecChhhCEEEEEEEEeCCce
Confidence 23446899999999875443
No 23
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=2.4e-41 Score=361.18 Aligned_cols=420 Identities=18% Similarity=0.221 Sum_probs=109.5
Q ss_pred cceeeeCcceeEEeecceeeeeec--CeecccC-CceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHK--GSLLKMS-DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS 84 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~--~~~l~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~ 84 (540)
+.|.+.+ |. +.+.|+|+ +..+... ..... ... ..|.|.+++.+|+|.|+|.+.+......+
T Consensus 148 L~C~~~~-p~------~~v~w~~~~~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s 211 (772)
T 3v2a_R 148 IPCLGSI-SN------LNVSLCARYPEKRFVPDGNRISW--DSK-------KGFTIPSYMISYAGMVFCEAKINDESYQS 211 (772)
T ss_dssp ECCCCSC-SS------CCEEEEEETTTEEECCCSSSCEE--ETT-------TEEEEEGGGTTTCSEEEEEEEETTEEEEC
T ss_pred EEccCCC-CC------cEEEEEecCCCccccCCCceeec--CCC-------CCeEecCCChhhCeEEEEEEEECCceEEE
Confidence 4566655 44 89999998 6655433 22222 222 37999999999999999999976543333
Q ss_pred e-EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEee--cCCCceEEEeCCEeecCCCceEEEEeec---Cc
Q psy670 85 T-VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIEDTGRIKMSKKSI---GK 158 (540)
Q Consensus 85 ~-~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~ 158 (540)
. ..+.+...+ .+.+.. .+..+..+.+|+.++|.|.+.+ .+.+.+.|++++..+............. ..
T Consensus 212 ~~~~~~v~~~~-~~~v~~-----~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (772)
T 3v2a_R 212 IMYIVVVVGYR-IYDVVL-----SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285 (772)
T ss_dssp CEEEEEEECCC-EEEEEE-----ECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCC
T ss_pred EEEEEEEecCc-cceeee-----CCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccc
Confidence 2 333333221 121110 1122357889999999999987 4456899999988765433222111100 22
Q ss_pred ceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEecccC
Q psy670 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKCSAKP 235 (540)
Q Consensus 159 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p 235 (540)
....+.|.|.+++.+|+|.|+|.+.+..+.....+.|.|.. +|.+... +....+.+|+.+.|.|.+.++|
T Consensus 286 ~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p 358 (772)
T 3v2a_R 286 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-------KPFVAFGSGMESLVEATVGERVRIPAKYLGYP 358 (772)
T ss_dssp EEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEEC-------CCC-----------------------------
T ss_pred eEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeC-------CCeeEeccCCCCcEEEcCCCcEEEEEEEeeeC
Confidence 33456899999999999999999999988888888888875 3333222 2345678899999999999999
Q ss_pred CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee--eEEEEEeeccCCCCCCCe
Q psy670 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA--NLNLNIEAEAEPEGDPPT 313 (540)
Q Consensus 236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~l~v~~~~~~~~~~p~ 313 (540)
.+.+.|+++|..+....... ....|.|.++..+|+|.|+|.+.|..|.... .+.+.|.. +|.
T Consensus 359 ~~~v~W~~~g~~l~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~-------~P~ 422 (772)
T 3v2a_R 359 PPEIKWYKNGIPLESNHTIK---------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV-------PPQ 422 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEECCEeCCCCceEc---------cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec-------CCc
Confidence 99999999998876532211 1237999999999999999999998876543 44455543 343
Q ss_pred EEeCC---ceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccC--------------------------CC-----ce
Q psy670 314 FIEKP---KIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQ--------------------------TD-----RI 358 (540)
Q Consensus 314 ~~~~~---~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~--------------------------~~-----~~ 358 (540)
+.... ....+.+|+.+.|.|.+.+.|.|. +.|++++..... .. ..
T Consensus 423 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~ 502 (772)
T 3v2a_R 423 IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN 502 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEecc
Confidence 32211 112377899999999999999996 999997432100 00 00
Q ss_pred EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccc
Q psy670 359 SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS 438 (540)
Q Consensus 359 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (540)
......+.....+.|.|..+ +|+|.|+|.|.|..|.....+.|.|..
T Consensus 503 ~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~------------------------------- 549 (772)
T 3v2a_R 503 QFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR------------------------------- 549 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC-------------------------------
Confidence 00011112222347777776 689999999999999988888888876
Q ss_pred cCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC-------------------
Q psy670 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN------------------- 499 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~------------------- 499 (540)
+|.+...+. ..+.+|+.++|.|.+.|.|.+.++|+|+|..+....
T Consensus 550 ---------------~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (772)
T 3v2a_R 550 ---------------GPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLN 613 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------CceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeecc
Confidence 666655443 457789999999999999999999999986653211
Q ss_pred -------------eEEEEEEecCCeEEEEEEeeee
Q psy670 500 -------------KHVVHIEQVKDVSMNFELWLGI 521 (540)
Q Consensus 500 -------------~~~~~~~~~~~g~y~c~~~~~~ 521 (540)
.....+...|.|.|+|.+....
T Consensus 614 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 648 (772)
T 3v2a_R 614 ATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK 648 (772)
T ss_dssp -----------------------------------
T ss_pred ceeeecCCCceEEEEECCCCccCCcEEEEEEEeCC
Confidence 1122466688999999998743
No 24
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=1.4e-39 Score=331.33 Aligned_cols=360 Identities=15% Similarity=0.191 Sum_probs=245.0
Q ss_pred ccceeeeCcceeEEeecceeeeee-cCeecccCCceEEEEecCccceeeEEEEEEcccccCCCe-eEEEEEEccCccee-
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYH-KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSG-EYKVIAKNKNGEGS- 83 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~- 83 (540)
.+.|.+.|.|. +.|.||| ||..+..+.++.+ ..++ .|.|.+++.+|+| .|+|.+.|..+...
T Consensus 133 ~l~C~~~~~~~------~~v~W~~~~g~~l~~~~~~~~--~~~~-------~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s 197 (524)
T 2ec8_A 133 LVRCPLTDPEV------TNYSLKGCQGKPLPKDLRFIP--DPKA-------GIMIKSVKRAYHRLCLHCSVDQEGKSVLS 197 (524)
T ss_dssp EECCCBSCCCC------SCEEEECSSSCCCCSSCEEEE--ETTT-------EEEEESCCGGGTTCEEEEEEC----CCCC
T ss_pred EEECcCCCCcc------ceEEEEccCCcCcCCCCceeE--CCCc-------cEEEeccchhhCCceEEEEEEECCceEEE
Confidence 35688888665 8999998 8888876665543 3333 7999999999999 99999998876553
Q ss_pred eeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCc-eEEEeCCEee--cCCCceEEEEeecCcc
Q psy670 84 STVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPD-IIWYQGTKVI--EDTGRIKMSKKSIGKD 159 (540)
Q Consensus 84 ~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~--~~~~~~~~~~~~~~~~ 159 (540)
..+.|.|...+ .++.+. .......+.+|+.+.|.|.+.+.|.+. +.|++++..+ ......... .....
T Consensus 198 ~~~~l~V~~~~~~~p~i~------~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~--~~~~~ 269 (524)
T 2ec8_A 198 EKFILKVRPAFKAVPVVS------VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH--GDFNY 269 (524)
T ss_dssp CCEECCEECCCCSCCEEE------CSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC--SSSCE
T ss_pred EEEEEEEEeCCCCCCcEE------ecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc--cCCcc
Confidence 36777775211 111111 112234688999999999999998886 9999998873 222111111 00122
Q ss_pred eEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEecccCC
Q psy670 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKCSAKPR 236 (540)
Q Consensus 160 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~ 236 (540)
.....|.|.+++.+|+|.|+|.+.|..|.....+.|.|.. +|.+... +....+.+|+.+.|.|.+.++|.
T Consensus 270 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~ 342 (524)
T 2ec8_A 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPK 342 (524)
T ss_dssp EEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES-------SCEEEEEESSCSEEEECTTCCEEEEEEEEEESC
T ss_pred ceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec-------cCceEeecCCCceEEEcCCCcEEEEEEEeecCC
Confidence 3345899999999999999999999999988888998885 5555433 24677889999999999999999
Q ss_pred Ce-EEEEeCCEEeeccCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeE
Q psy670 237 PE-VKWFKADKLVKESSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF 314 (540)
Q Consensus 237 ~~-v~W~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~ 314 (540)
+. +.|++++..+........... .........|.|.+++.+|+|.|+|.|.|..|....++.|.|.. +|.+
T Consensus 343 p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~-------~P~i 415 (524)
T 2ec8_A 343 PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT-------KPEI 415 (524)
T ss_dssp CCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE-------EEEE
T ss_pred CcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec-------CCeE
Confidence 98 999999998876553222111 11123456899999999999999999999999988888888876 5566
Q ss_pred EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC--------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670 315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ--------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386 (540)
Q Consensus 315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 386 (540)
...+. ..+| .|.|.+.|.|.|.|.|++++..+.. +...........+.......+.....+|+|.|
T Consensus 416 ~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y 489 (524)
T 2ec8_A 416 LTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTV 489 (524)
T ss_dssp EEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC----
T ss_pred eeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEE
Confidence 54432 3455 9999999999999999999776521 11100000111221111223444456899999
Q ss_pred EEEEEcCCeeeEEEEEEEEEEEE
Q psy670 387 KCNIKNFHGELNANLTLNIEMVR 409 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l~V~~~~ 409 (540)
+|.|.|..|....++.|.|...+
T Consensus 490 ~C~a~N~~G~~~~~~~l~V~e~~ 512 (524)
T 2ec8_A 490 ECKAYNDVGKTSAYFNFAFKGNN 512 (524)
T ss_dssp -CEEECSSCEEECCCCCCC----
T ss_pred EEEEEcCCCceEEEEEEEEecCC
Confidence 99999999999999999988744
No 25
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=2.5e-39 Score=318.58 Aligned_cols=344 Identities=17% Similarity=0.345 Sum_probs=253.5
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEc----CCCCCCCeEEEEEEEcC
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN----NPTKDDGGNYRCNACNS 185 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~~~~~ 185 (540)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+............ ... .|.|. +++.+|+|.|+|.+.|.
T Consensus 25 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~-~~~----~l~i~~~~~~~~~~D~G~Y~C~a~n~ 99 (404)
T 3p3y_A 25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR-RSG----TLVIDFRSGGRPEEYEGEYQCFARNK 99 (404)
T ss_dssp TTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCS-SSC----CCBCCCTTTCCTTSSCEEEEEEEECS
T ss_pred ccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEec-CCc----eEEEEeccCCCCccCCEEEEEEEEcC
Confidence 3457889999999999999999999999999987533221111100 011 44443 78899999999999999
Q ss_pred Ccee-EEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeecc-CceEEEEecC
Q psy670 186 IGES-NANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKES-SKIKIIVNEQ 261 (540)
Q Consensus 186 ~~~~-~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~ 261 (540)
.|.. +..+.|.|... |.+ ........+.+|+.+.|.|.+ .+.|.+.+.|++++...... ..... . .
T Consensus 100 ~g~~~s~~~~l~V~~~-------p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~-~ 169 (404)
T 3p3y_A 100 FGTALSNRIRLQVSKS-------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ--G-H 169 (404)
T ss_dssp SCEEEEEEEEEEECCC-------CCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEE--C-T
T ss_pred CCeEeeeeEEEEEecc-------CccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEE--c-C
Confidence 8876 46778888753 222 222334667889999999999 77899999999987544332 22221 1 1
Q ss_pred CCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCCee---eeEEEEEeeccCCCCCCCeEEeCC---ceEEeeCCCeEEEEEE
Q psy670 262 DDTYEIICEITDPIGPD-SGTYRCNVKNEFGESN---ANLNLNIEAEAEPEGDPPTFIEKP---KIRSEQGGKLVVMECK 334 (540)
Q Consensus 262 ~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~---~~~~l~v~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~ 334 (540)
.+ .|.|.++...| +|.|+|.+.|..+... ..+.+.+...+.....+|.+.... ....+.+|+.+.|.|.
T Consensus 170 ~~----~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~ 245 (404)
T 3p3y_A 170 NG----DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245 (404)
T ss_dssp TS----CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECC
T ss_pred CC----cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEE
Confidence 11 58999999999 5999999999877532 224455544332222233333222 3456889999999999
Q ss_pred EEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEe
Q psy670 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYR 414 (540)
Q Consensus 335 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~ 414 (540)
+.+.|.+.+.|+++|..+...... ....+. .|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 246 ~~g~p~~~v~W~~~~~~~~~~~~~---~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------- 311 (404)
T 3p3y_A 246 ASGVPTPDIAWYKKGGDLPSDKAK---FENFNK----ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA------- 311 (404)
T ss_dssp BCCSSCCEEEEEETTBCCCTTTEE---EEGGGT----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE-------
T ss_pred ECCCCCCcEEEEECCEECCCCccc---ccccCc----eEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC-------
Confidence 999999999999999988665431 112222 799999999999999999999999998899998887
Q ss_pred eecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCee
Q psy670 415 VRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNT 494 (540)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~ 494 (540)
+|.+...+....+.+|+.++|.|.+.|.|.+.++|+++|..
T Consensus 312 ---------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~ 352 (404)
T 3p3y_A 312 ---------------------------------------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP 352 (404)
T ss_dssp ---------------------------------------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred ---------------------------------------CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEe
Confidence 78888778888999999999999999999999999999999
Q ss_pred cCCCCe-----------EEEEEEecCCeEEEEEEeeeeeeee
Q psy670 495 VKEDNK-----------HVVHIEQVKDVSMNFELWLGIVEKR 525 (540)
Q Consensus 495 l~~~~~-----------~~~~~~~~~~g~y~c~~~~~~~~~~ 525 (540)
+..... ....+...|.|.|+|.+.+......
T Consensus 353 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 394 (404)
T 3p3y_A 353 LQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLL 394 (404)
T ss_dssp GGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEE
T ss_pred cCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEE
Confidence 865431 1113556789999999987554443
No 26
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.3e-38 Score=311.02 Aligned_cols=335 Identities=18% Similarity=0.242 Sum_probs=247.8
Q ss_pred cCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCcee-EEE
Q psy670 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGES-NAN 192 (540)
Q Consensus 115 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~-~~~ 192 (540)
.+|+.++|.|.+.|.|.+.+.|+|+|..+......+.... + ..|.|.++.. +|+|.|+|.+.|..|.. +..
T Consensus 20 ~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~----~---~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~ 92 (382)
T 1cs6_A 20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV----A---GDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92 (382)
T ss_dssp CSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE----T---TEEEEESCCHHHHCEEEEEEEEETTEEEECCC
T ss_pred CCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee----C---CeEEEecccccccCEEEEEEEEcCCcEEEecc
Confidence 6899999999999999999999999998865422222211 1 1799999987 99999999999988865 334
Q ss_pred EEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 193 IALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 193 ~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
+.|.|... +.+ ...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.............. ..|.
T Consensus 93 ~~l~v~~~-------~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~----~~L~ 161 (382)
T 1cs6_A 93 ASLRFGFL-------QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT----GNLY 161 (382)
T ss_dssp EEEEEEEE-------CCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTT----CCEE
T ss_pred eEEEeecc-------ccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCc----eEEE
Confidence 55666532 222 2224456678899999999964 578899999999876532211111111111 1699
Q ss_pred EeCCCCCCcEEEEEEEEcCCCCeee-----eEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccCCCeEE
Q psy670 271 ITDPIGPDSGTYRCNVKNEFGESNA-----NLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKPMPEIV 344 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~~~~~-----~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~~i~ 344 (540)
|.+++.+|+|.|+|.+.+..+.... ...+.+..... ...+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.
T Consensus 162 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~-~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~ 240 (382)
T 1cs6_A 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA-RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240 (382)
T ss_dssp ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC-CCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEE
T ss_pred EEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhc-ccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEE
Confidence 9999999999999999987654322 23444432111 111344443 3556778899999999999999999999
Q ss_pred EEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeee
Q psy670 345 WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK 424 (540)
Q Consensus 345 W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 424 (540)
|++++..+..... .... .|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 241 W~~~~~~~~~~~~------~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~----------------- 293 (382)
T 1cs6_A 241 WRKLDGSQTSKWL------SSEP----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA----------------- 293 (382)
T ss_dssp EEECCSCCSCCCS------BSSS----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-----------------
T ss_pred EEECCcccccEEe------cCCc----EEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec-----------------
Confidence 9998876543111 1122 799999999999999999999999988888998887
Q ss_pred eeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE-
Q psy670 425 MGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV- 503 (540)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~- 503 (540)
+|.+...+....+.+|+.++|.|.+.|.|.|.++|+|+|..+..+.+..+
T Consensus 294 -----------------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~ 344 (382)
T 1cs6_A 294 -----------------------------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS 344 (382)
T ss_dssp -----------------------------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred -----------------------------CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE
Confidence 77777777778899999999999999999999999999999887654322
Q ss_pred -------EEEecCCeEEEEEEeeeeeee
Q psy670 504 -------HIEQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 504 -------~~~~~~~g~y~c~~~~~~~~~ 524 (540)
.+...|.|.|+|.+.+.....
T Consensus 345 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 372 (382)
T 1cs6_A 345 GGELRFSKLVLEDSGMYQCVAENKHGTV 372 (382)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred CCEEEECcCCcccCEEEEEEEEeCCCeE
Confidence 344578999999998655443
No 27
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=1e-38 Score=312.44 Aligned_cols=335 Identities=17% Similarity=0.245 Sum_probs=245.6
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCC------CeEEEEEEEc
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD------GGNYRCNACN 184 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d------~G~Y~C~~~~ 184 (540)
..+.+|+.++|.|.+.|.|.+.+.|+| +|..+....+..... .+. +|.|.+++.+| +|.|+|.+.|
T Consensus 14 ~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~----~~~---~L~i~~~~~~d~~~~~d~G~Y~C~a~n 86 (388)
T 2v5m_A 14 IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS----SDG---KLVFPPFRAEDYRQEVHAQVYACLARN 86 (388)
T ss_dssp EEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC----STT---EEEECCCCGGGCCHHHHEEEEEEEEEE
T ss_pred EEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc----CCc---eEEecccChhhccccccCceEEEEEEc
Confidence 457799999999999999999999999 787775433322211 111 79999999987 9999999999
Q ss_pred CCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeecc-----CceE
Q psy670 185 SIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKES-----SKIK 255 (540)
Q Consensus 185 ~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~-----~~~~ 255 (540)
..|.. +..+.|.+.. +|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++..+... .+..
T Consensus 87 ~~g~~~s~~~~v~v~~-------~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 159 (388)
T 2v5m_A 87 QFGSIISRDVHVRAVV-------AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 159 (388)
T ss_dssp TTEEEECCCEEEEEEC-------CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEE
T ss_pred cCCeEEecceEEEEcc-------ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEE
Confidence 98864 4566666654 444555556677889999999999987643 689999998776432 1221
Q ss_pred EEEecCCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCeee-e---EEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeE
Q psy670 256 IIVNEQDDTYEIICEITDPIGPDS-GTYRCNVKNEFGESNA-N---LNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLV 329 (540)
Q Consensus 256 ~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~~-~---~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v 329 (540)
. ... ..|.|.+++.+|. |.|+|.+.+..+.... . ..+.|..... ...|.+. .......+.+|+.+
T Consensus 160 ~--~~~-----~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~v~~G~~v 230 (388)
T 2v5m_A 160 V--LPS-----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS--SSAPRTPALVQKPLELMVAHTI 230 (388)
T ss_dssp E--CTT-----SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS--CEEEECCSSCCCCEEEETTSCE
T ss_pred E--ccC-----CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc--CCCCcCccccCCceEEeeCCcE
Confidence 1 111 1699999999999 9999999987543221 1 2344443110 0011110 01223457789999
Q ss_pred EEEEEEEccCCCeEEEEECCEEcc------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 330 VMECKVKAKPMPEIVWFHEGKELQ------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 330 ~l~C~~~~~p~~~i~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
.|.|.+.|.|.+.+.|++++..+. ...+.. ..+. .|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 231 ~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 302 (388)
T 2v5m_A 231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK----QVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302 (388)
T ss_dssp EECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE----EETT----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEECCCCCCCEEEEEecCCCCcccccccccCcee----cccC----EEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence 999999999999999999754322 122221 1122 79999999999999999999999998888899
Q ss_pred EEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC
Q psy670 404 NIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE 483 (540)
Q Consensus 404 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~ 483 (540)
.|.. +|.+...+....+.+|+.++|.|.+.|.|.
T Consensus 303 ~V~~----------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 336 (388)
T 2v5m_A 303 TVTA----------------------------------------------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336 (388)
T ss_dssp EEEE----------------------------------------------EEEEEEESSEEEECTTSCEEEEEEEEEECC
T ss_pred EEeC----------------------------------------------CCccccCCCcEEecCCCCEEEEEEeccccC
Confidence 8887 666666667788999999999999999999
Q ss_pred CceEEEecCeecCCCCeEEE--EEEecCCeEEEEEEeeeeee
Q psy670 484 PSVTWMKEKNTVKEDNKHVV--HIEQVKDVSMNFELWLGIVE 523 (540)
Q Consensus 484 ~~v~W~~~~~~l~~~~~~~~--~~~~~~~g~y~c~~~~~~~~ 523 (540)
|.|+|+|+|..+..+..... .+...|.|.|+|.+.+..-+
T Consensus 337 p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 378 (388)
T 2v5m_A 337 KTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES 378 (388)
T ss_dssp CEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred CeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCc
Confidence 99999999999976644222 35567899999999875443
No 28
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=318.34 Aligned_cols=346 Identities=12% Similarity=0.139 Sum_probs=234.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
++.+.+|++++|.|.+.+.|..++.|++++..+.....+.. .+....+|.|.+++.+|+|.|+|.+.+..+...
T Consensus 57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~------~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~ 130 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130 (527)
T ss_dssp EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--CEEE
T ss_pred eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC------CcceEEEEEECcCChhhCeeEEEEEEeccccEE
Confidence 57789999999999998888889999999987765444322 122334799999999999999999999888777
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+.|.|.. ..+...........|+.+.|.|.+.|+|.+.+.|++++..+....... .......
T Consensus 131 ~~~~v~v~~--------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~--------~~~~~~~ 194 (527)
T 3qs9_E 131 ILFTVSIRN--------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES--------PAVVKKE 194 (527)
T ss_dssp EEEEEEEC-------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC---------------------CEEEC
T ss_pred EEEEEEECC--------ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccC--------CcEEEEe
Confidence 777776652 111111112223346677899999999999999999887653211000 0001122
Q ss_pred EeCCCCCCcEEEEEEEEcCCCCeeee-EEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEEC
Q psy670 271 ITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHE 348 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~ 348 (540)
...+...|+|.|+|.|.|..|..... +.+.|.. +|.+ .+....+.+|+.+.|.|.+. +.|.+.|.|+++
T Consensus 195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-------~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~ 265 (527)
T 3qs9_E 195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265 (527)
T ss_dssp CSEECCCCSSCEEEEEECSSCEEEEECEEEESSS-------CCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECS
T ss_pred eeeccccCCEEEEEEEEeCCCcccceEEEEEEec-------cCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEEC
Confidence 23344789999999999998876543 4555543 2222 34466788999999999997 899999999999
Q ss_pred CEEccCCCceEEEEEecCC--eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeee
Q psy670 349 GKELQQTDRISWNVTLKGD--KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426 (540)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 426 (540)
|..+.............+. ....+|.|.+++.+|+|.|+|.|.|. ...++.|.|..
T Consensus 266 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~------------------- 323 (527)
T 3qs9_E 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE------------------- 323 (527)
T ss_dssp SSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--------------------
T ss_pred CEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc-------------------
Confidence 9887665433222222221 12336999999999999999999997 56677777776
Q ss_pred eeeecccccccccCcccccceeeeeeeeceeecCC--cEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCe----
Q psy670 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP--KVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNK---- 500 (540)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~--~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~---- 500 (540)
+|.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+..
T Consensus 324 ---------------------------~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~ 376 (527)
T 3qs9_E 324 ---------------------------KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376 (527)
T ss_dssp ----------------------------CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSS
T ss_pred ---------------------------cCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccC
Confidence 55444332 356778899999999999999999999999998865431
Q ss_pred -EEE---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670 501 -HVV---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP 537 (540)
Q Consensus 501 -~~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~ 537 (540)
..+ .+...|.|.|+|.+......... ...+.+..+|
T Consensus 377 ~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~-~~~L~V~~~P 416 (527)
T 3qs9_E 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTK-MFTLNIRRKP 416 (527)
T ss_dssp SSEEEEECCCTTCCSCEEEEEEETTEEEEE-EEEEC--CCC
T ss_pred CcEEEEecCCcccCEEEEEEEEeCCCcEEE-EEEEEEecCC
Confidence 222 45567899999999875544333 3444444444
No 29
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=8.8e-39 Score=313.67 Aligned_cols=344 Identities=19% Similarity=0.276 Sum_probs=247.8
Q ss_pred CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+.++|.|.+.+ .|.+.+.|+|+|..+.......... ..+ .+|.|.+++.+|+|.|+|.+.|..|..
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~---~~~---~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 88 (395)
T 1bih_A 15 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR---KDE---GSLVFLRPQASDEGHYQCFAETPAGVA 88 (395)
T ss_dssp EEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC---TTS---CCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEe---cCC---ceEEEecCCCCCCcEEEEEEEeCCCeE
Confidence 356789999999999988 7889999999999886654311111 111 179999999999999999999988765
Q ss_pred E-EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCE---Eeec----cCceEEEEec
Q psy670 190 N-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADK---LVKE----SSKIKIIVNE 260 (540)
Q Consensus 190 ~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~---~l~~----~~~~~~~~~~ 260 (540)
. ..+.|.|.... .|.+ .+....+.+|+.+.|.|.+ .+.|.+.+.|++++. +... ..+... ..
T Consensus 89 ~s~~~~l~v~~~~-----~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (395)
T 1bih_A 89 SSRVISFRKTYLI-----ASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA--GP 159 (395)
T ss_dssp ECCCEEEEEEEEE-----CCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE--CT
T ss_pred EeEEEEEEEEEee-----cCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEE--cC
Confidence 3 33555544321 2222 2345667799999999996 778999999999862 1111 112111 11
Q ss_pred CCCeEEEEEEEeCCCCCCcE---EEEEEEEcCCCCeeeeEEEEEeeccCC------CCCCCeEEeCCceEEeeCCCeEEE
Q psy670 261 QDDTYEIICEITDPIGPDSG---TYRCNVKNEFGESNANLNLNIEAEAEP------EGDPPTFIEKPKIRSEQGGKLVVM 331 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~~~~~~l~v~~~~~~------~~~~p~~~~~~~~~~~~~g~~v~l 331 (540)
. + .|.|.+++.+|+| .|+|.+.+..+...............+ ...+|.+ .+....+.+|+.+.|
T Consensus 160 ~-~----~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l 232 (395)
T 1bih_A 160 D-G----NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMI 232 (395)
T ss_dssp T-S----CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEE
T ss_pred C-C----cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEE
Confidence 1 1 5889999999999 999999998887544333222111100 0112333 245667889999999
Q ss_pred EEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE-EEEEEEEEEEE
Q psy670 332 ECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA-NLTLNIEMVRF 410 (540)
Q Consensus 332 ~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~ 410 (540)
.|.+.|.|.+.+.|+++|..+............... ...|.|.+++.+|+|.|+|.|.|..|.... ++.|.|..
T Consensus 233 ~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~--- 307 (395)
T 1bih_A 233 YCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS--GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS--- 307 (395)
T ss_dssp EEEEECSSCCCCEEEETTEECCCCTTSSEESCSSST--TSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE---
T ss_pred EEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCC--CceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc---
Confidence 999999999999999999988764433222111111 117999999999999999999999988654 88888887
Q ss_pred EEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcE-EEecCCCeEEEEEEEeeecCCceEEE
Q psy670 411 IKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKV-VTISKKKTVVIECKVMSMYEPSVTWM 489 (540)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~-~~~~~g~~~~l~C~v~g~p~~~v~W~ 489 (540)
+|.+...+.. ..+.+|+.++|.|.+.|.|.|.++|+
T Consensus 308 -------------------------------------------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~ 344 (395)
T 1bih_A 308 -------------------------------------------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS 344 (395)
T ss_dssp -------------------------------------------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEE
T ss_pred -------------------------------------------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEE
Confidence 7777766665 78899999999999999999999999
Q ss_pred ecCeecCCCCeE----EE---EEEecCCeEEEEEEeeeeeee
Q psy670 490 KEKNTVKEDNKH----VV---HIEQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 490 ~~~~~l~~~~~~----~~---~~~~~~~g~y~c~~~~~~~~~ 524 (540)
++|..+..+... .+ .+...|.|.|+|.+.+.....
T Consensus 345 ~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~ 386 (395)
T 1bih_A 345 HNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK 386 (395)
T ss_dssp ETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred ECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCc
Confidence 999998754211 12 345578999999998755443
No 30
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=5.9e-37 Score=316.53 Aligned_cols=360 Identities=15% Similarity=0.249 Sum_probs=252.1
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecc-------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLK-------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKV 73 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 73 (540)
.+.|.+.|.|+ .+.+.|+|++..+. ...++.+...... ...++|.|.+++.+|+|.|+|
T Consensus 131 ~l~C~~~~~~~-----~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C 202 (585)
T 2ocw_A 131 TINCPFKTENA-----QKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTG---QLLFSVVINQLRLSDAGQYLC 202 (585)
T ss_pred EEEEEecCCCC-----CccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCC---CcEEEEEEccCChhHCeEEEE
Confidence 36698886553 17899999986421 1234444332221 123589999999999999999
Q ss_pred EEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCC---CceEEE-eCCEe----ecC
Q psy670 74 IAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPM---PDIIWY-QGTKV----IED 145 (540)
Q Consensus 74 ~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~-~~~~~----~~~ 145 (540)
.+.|..+.....+.|.|...+ .....+.+|+.+.|.|.+ +.+. +.+.|+ ++|.. +..
T Consensus 203 ~a~n~~g~~~~~~~l~V~~~~--------------p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~ 267 (585)
T 2ocw_A 203 QAGDDSNSNKKNADLQVLKPE--------------PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNT 267 (585)
T ss_pred EeccCCccccceEEEEEccCC--------------CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeC
Confidence 999999888888888886533 122356799999999998 4444 578886 77732 111
Q ss_pred --------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee----EEEEEEEEecCcCCCCCCCeeccC
Q psy670 146 --------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES----NANIALNFQGGENGAGFAPSFIEK 213 (540)
Q Consensus 146 --------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~p~~~~~ 213 (540)
..++.+... .......|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|.. +|.+...
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~-------~p~~~~~ 337 (585)
T 2ocw_A 268 LGKRAPAFEGRILLNPQ---DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE-------ESTIPRS 337 (585)
T ss_pred CCcCCcccCCceEeecc---CCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEec-------ccccccC
Confidence 222222211 11233479999999999999999999953333 2777888875 5666666
Q ss_pred CceeecCCCCeEEEEEEecccCCCeE----EEEe--CCE--Eeecc---------CceEEEEecCCCeEEEEEEEeCCCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKPRPEV----KWFK--ADK--LVKES---------SKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p~~~v----~W~~--~~~--~l~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
+....+.+|+.+.|.|.+.+.|.+.+ .|++ +|. .+... .+..+.. .......+|.|.+++.
T Consensus 338 ~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~--~~~~g~~~L~I~~v~~ 415 (585)
T 2ocw_A 338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE--EPGNGTFTVILNQLTS 415 (585)
T ss_pred CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEec--cCCCcEEEEEECCCCh
Confidence 77778889999999999999998876 7999 886 44322 1222211 1112224699999999
Q ss_pred CCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE----ccCCCeEEEEECCEEc
Q psy670 277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK----AKPMPEIVWFHEGKEL 352 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~----~~p~~~i~W~~~~~~~ 352 (540)
+|+|.|+|.| |..|.....+.|.|... +|.+ ..+....+.+|+.+.|.|.+. +.|.+.|.|+++|..+
T Consensus 416 ~D~G~Y~C~a-n~~g~~~~~~~l~V~~~------~p~~-~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~ 487 (585)
T 2ocw_A 416 RDAGFYWCLT-NGDTLWRTTVEIKIIEG------EPNL-KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQA 487 (585)
T ss_pred hhCEEEEEcc-cCCCccceeEEEEEecC------cccc-ccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCcee
Confidence 9999999999 88888777888888653 2222 235667788999999999997 6678899999999877
Q ss_pred cCCCceE--E-EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEEEEEEEE
Q psy670 353 QQTDRIS--W-NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTLNIEMVR 409 (540)
Q Consensus 353 ~~~~~~~--~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~ 409 (540)
....... . ............|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 488 LPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred eeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 5432110 0 01112222334899999999999999999999998654 44888887743
No 31
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=5.5e-37 Score=312.09 Aligned_cols=366 Identities=13% Similarity=0.145 Sum_probs=237.9
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEE-ecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTL-VQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~ 85 (540)
.+.|.+.|.|+ |.+.|.|+|||.++..+.++.... ..++ .....+.|.|.+++.+|+|.|+|.|.|..+....+
T Consensus 133 ~l~C~~~g~~p----~~~~v~W~k~g~~l~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 207 (523)
T 2rcj_C 133 TLVCLISDFYP----GAVTVAWKADGSPVKAGVETTKPSKQSNN-KYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 207 (523)
T ss_pred EEEEEeccccC----CceEEEEecCCCCCCCceEeccccccCCC-CEEEEEEEEEechhcCCCceEEEEEEecCcccccc
Confidence 36799998875 124999999999887554332211 1222 33345689999999999999999999988766555
Q ss_pred EEEEEee-cCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEE
Q psy670 86 VNLNFSE-EDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162 (540)
Q Consensus 86 ~~l~v~~-~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (540)
+.+.+.. ....+.+.. ......+.+|+.+.|.|.+.|. |.+ .|.|+++|..+......... ...+.....
T Consensus 208 ~~~~~~~~~~~~P~v~~------~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~-~~~g~~~~~ 280 (523)
T 2rcj_C 208 VAPTECSASTKGPSVFP------LAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLS 280 (523)
T ss_pred eeeeecCCCCcCCEEEe------cCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEe-cCCCcEEEE
Confidence 5433211 110111110 0112245789999999999876 777 89999999875321111111 111222335
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCee-ccCCceee-cCCCCeEEEEEEecccCC----
Q psy670 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSF-IEKPRIIP-NESGTLIQMKCKCSAKPR---- 236 (540)
Q Consensus 163 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p~---- 236 (540)
+.|.|.++..+| |.|+|.|.|..|.......|.+.. .|.+ ...+.... +.+|+.+.|.|.+.+.|+
T Consensus 281 s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~-------~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~ 352 (523)
T 2rcj_C 281 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS-------LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQ 352 (523)
T ss_pred EEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc-------CceEEecCCCchhhcccCCceEEEEEEecccCCCCc
Confidence 689999999999 999999999998876666665543 2333 33333333 678999999999998643
Q ss_pred CeEEEEeCCEEeeccCceEEEEec-CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670 237 PEVKWFKADKLVKESSKIKIIVNE-QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315 (540)
Q Consensus 237 ~~v~W~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~ 315 (540)
+.|.|+++|..+............ ......+.|.|.++..+|+|.|+|.|.|..+.......+.+... ...+|.+.
T Consensus 353 ~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~---~~~~P~v~ 429 (523)
T 2rcj_C 353 VKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKG---QPREPQVY 429 (523)
T ss_pred eEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccC---CCCCCEEE
Confidence 489999999988655432211111 11233457899999999999999999998776544444443110 01255554
Q ss_pred eCCceEEeeCCCeEEEEEEEEccCCC--eEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEc
Q psy670 316 EKPKIRSEQGGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKN 392 (540)
Q Consensus 316 ~~~~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n 392 (540)
..+.......+..+.|.|.+.|.|++ .+.|+++|..+............++.. ..+.|.+.....+|+|.|+|.|.|
T Consensus 430 ~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n 509 (523)
T 2rcj_C 430 TLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH 509 (523)
T ss_pred EeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEc
Confidence 43322222234459999999997665 899999999987543322222223322 234677777777889999999999
Q ss_pred CCe
Q psy670 393 FHG 395 (540)
Q Consensus 393 ~~g 395 (540)
...
T Consensus 510 ~~l 512 (523)
T 2rcj_C 510 EAL 512 (523)
T ss_pred CCc
Confidence 764
No 32
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.2e-37 Score=307.83 Aligned_cols=329 Identities=15% Similarity=0.232 Sum_probs=223.8
Q ss_pred ccceeeeCcceeEEeecc---eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670 7 LKSYTLEGEPTKQIEANF---QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS 83 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~---~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~ 83 (540)
.+.|.+.|.|+ + .|.|+|+|.++..+.... +. ...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 105 ~L~C~~~g~~~------~~~~~v~W~k~g~~l~~~~~~~-----~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 169 (450)
T 1z7z_I 105 TLRCQVEGGAP------RANLTVVLLRGEKELKREPAVG-----EP----AEVTTTVLVRRDHHGANFSCRTELDLRPQG 169 (450)
T ss_dssp EEEEEEECCBC------GGGEEEEEEETTEEEEEEECCT-----TT----EEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred EEEEEecCCCC------CcCcEEEEeeCCEEeecccccc-----cc----cceEEEEEeeccccCceEEEEEEcccCCCC
Confidence 36799999887 6 899999999886433211 11 236899999999999999999999877543
Q ss_pred eeEEEEEeecCCccccCC--CCCCCCCCCCccccCCCeEEEEEEEeec-C--CCceEEEeCCEeecCCCceEEEEeecCc
Q psy670 84 STVNLNFSEEDGKLKVPG--GKAPRFPKKPTIHQDGDLLVMECVLEAS-P--MPDIIWYQGTKVIEDTGRIKMSKKSIGK 158 (540)
Q Consensus 84 ~~~~l~v~~~~~~~~i~~--~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 158 (540)
..+.+.+.... .+.+.. ..+|.+. .+..+.+|+.+.|.|.+.|. | .+.+.|++++..+.. +.... .
T Consensus 170 ~~~~~~~s~~~-~l~v~~~~~~~p~~~-~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~~-----~ 240 (450)
T 1z7z_I 170 LELFENTSAPY-QLQTFVLPATPPQLV-SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYG-----N 240 (450)
T ss_dssp SCEEEEECCCE-ECEECCCCSSCCEEE-CCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEEE-----T
T ss_pred ceEEeeccCcc-ceeeeccCCCCCEec-CceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEec-----C
Confidence 22222221111 111111 0112111 12568899999999999888 7 679999999998865 22211 1
Q ss_pred ceEEEEEEEcCCCCCCCe--EEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670 159 DTYLLRLEINNPTKDDGG--NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236 (540)
Q Consensus 159 ~~~~~~L~i~~~~~~d~G--~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 236 (540)
+.....+.+ +++.+|+| .|+|.+.|..+.....+.|.|...+ +|.+... ...+.+|+.+.|.|.+. |.
T Consensus 241 ~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~-----~p~i~~~--~~~v~~G~~v~l~C~~~--p~ 310 (450)
T 1z7z_I 241 DSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP-----APNVILT--KPEVSEGTEVTVKCEAH--PR 310 (450)
T ss_dssp TEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC-----CCEEEES--CSEEETTCEEEEEEEC-----
T ss_pred CceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC-----CCeEecC--CeeEeCCCcEEEEEecC--CC
Confidence 222223344 77899999 9999999999988888888887532 3444332 34677899999999998 88
Q ss_pred CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC-C---eeeeEEEEEeeccCCCCCCC
Q psy670 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG-E---SNANLNLNIEAEAEPEGDPP 312 (540)
Q Consensus 237 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~---~~~~~~l~v~~~~~~~~~~p 312 (540)
+.+.| +|..+.... . ...|.|.++..+|+|.|+|.|.|..+ . ....+.|.|.. +|
T Consensus 311 p~i~W--~g~~~~~~~--------~----~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~-------~P 369 (450)
T 1z7z_I 311 AKVTL--NGVPAQPLG--------P----RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-------GP 369 (450)
T ss_dssp ---------------C--------C----CCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEE-------EE
T ss_pred CEeEE--CCEEcCCCC--------c----eEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEec-------CC
Confidence 89999 676652111 0 12688999999999999999997655 2 33566777766 33
Q ss_pred eEEeC--CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 313 TFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 313 ~~~~~--~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
.+... +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+... +. .+ .++.+|+|.|+|.|
T Consensus 370 ~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~----------g~----~~---~v~~~d~G~Y~C~a 432 (450)
T 1z7z_I 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------GE----SV---TVTRDLEGTYLCRA 432 (450)
T ss_dssp ECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT----------TS----CE---ECCGGGCEEEEEEE
T ss_pred ceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC----------CC----eE---eEehhhCeEEEEEE
Confidence 33333 35667889999999999999999999999998744322 21 22 46789999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|..
T Consensus 433 ~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 433 RSTQGEVTREVTVNVLS 449 (450)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCceeEEEEEEEEc
Confidence 99999999999998864
No 33
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=2.4e-37 Score=307.82 Aligned_cols=368 Identities=14% Similarity=0.185 Sum_probs=236.7
Q ss_pred ccceeeeCcceeEEeecceeeeeecC--eec------------ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLL------------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 72 (540)
.+.|.+.|.|.. ...+.+.|||++ ..+ ....++.+..... ..+|.|.+++.+|+|.|+
T Consensus 20 ~L~C~~~~~~~~--~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~------~~~L~I~~v~~~D~G~Y~ 91 (438)
T 1qgc_4 20 TISCRASESVDS--SGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRT------DFTLTIDPVEADDVATYY 91 (438)
T ss_dssp EEEEEESSCCEE--TTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETT------EEEEEESSCCGGGCEEEE
T ss_pred EEEEecCCCccc--CCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCC------cEEEEeCCCcCcCCeeEE
Confidence 367998888850 001389999974 322 1234565544222 368999999999999999
Q ss_pred EEEEccCcce-eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEee-cCCC-ceEEEeCCEeecCCCce
Q psy670 73 VIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA-SPMP-DIIWYQGTKVIEDTGRI 149 (540)
Q Consensus 73 C~~~~~~~~~-~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~ 149 (540)
|.+.|..+.. ...+.|.|.....++.+. .........+|+.+.|.|.+.+ .|.+ .+.|+|+|..+......
T Consensus 92 C~a~n~~~~~~~~~~~l~V~~~~~~P~v~------~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 165 (438)
T 1qgc_4 92 CQQSNEVPLTFGAGTKLDLKRADAAPTVS------IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN 165 (438)
T ss_dssp EEECSSTTCCBCCCEEEEECCCCBCCEEE------EECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred EEEecCCCccccCceeEEecCCCCCCEEE------ecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCcee
Confidence 9999987643 345666664322111111 0011122346889999999977 6777 89999999988654111
Q ss_pred EEEEe--ecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEE
Q psy670 150 KMSKK--SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQM 227 (540)
Q Consensus 150 ~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l 227 (540)
..... ..+.....+.|.|.++..+|+|.|+|.+.|..+.......+.+.. .+.....+....+.+|+.+.|
T Consensus 166 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~G~~v~L 238 (438)
T 1qgc_4 166 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE-------CEVMLVESGGGLVKPGGSLKL 238 (438)
T ss_dssp EEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC--------CCEEEEECCEEECTTCCEEE
T ss_pred ccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccccccc-------ceeEEecCCceEEecCCcEEE
Confidence 11111 111122245899999999999999999999887653333332211 122222344566889999999
Q ss_pred EEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 228 KCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 228 ~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
.|.+.+.| .+.+.|+++ +..+. ...++....... .....|.|.+++.+|+|.|+|.|
T Consensus 239 ~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a 316 (438)
T 1qgc_4 239 SCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNA--KNTLYLQMSSLRSADTAMYYCVR 316 (438)
T ss_dssp EEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETT--TTEEEEEECSCCGGGCCEEEEEE
T ss_pred EEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecC--CCeEEEEECCCChhhCEEEEEEE
Confidence 99999987 678999996 44332 112333322211 22347999999999999999999
Q ss_pred EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceE
Q psy670 287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRIS 359 (540)
Q Consensus 287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~ 359 (540)
.|..+ .......+.|...+ ..+|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+++|..+.......
T Consensus 317 ~n~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~ 393 (438)
T 1qgc_4 317 REDGGDEGFAYWGQGTVVTVSAAK---TTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA 393 (438)
T ss_dssp CCSSSCCCCCSBCCCEEEEECSSC---CBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCC
T ss_pred EccCCCccceeeCCCEEEEEecCC---CCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCc
Confidence 98443 22234566665421 124554433323346689999999999997 887 999999998765321111
Q ss_pred EEEEecC-CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 360 WNVTLKG-DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 360 ~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
. ...+ ....+.|.|.++..+| |.|+|.|.|..|.......|
T Consensus 394 ~--~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 394 V--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp E--EETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred c--ccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence 1 1222 1223479999888888 99999999999876655544
No 34
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=6.8e-38 Score=303.36 Aligned_cols=311 Identities=14% Similarity=0.170 Sum_probs=225.8
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeeccc--------------CCceEEEEec-CccceeeEEEEEEcccccCCCeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM--------------SDRLSSTLVQ-DQSRLYYLAVLTIKNVQKSDSGEY 71 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~--------------~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y 71 (540)
.+.|.+.|.|. +.+.|+|++..+.. ..|+.+.... + ....+|.|.+++.+|+|.|
T Consensus 13 ~L~C~~~~~p~------~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 13 ELTCTASQKKS------IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD----QGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EECCCCTTCSS------CCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHH----TTCCCEEECSCCGGGCEEE
T ss_pred EEEEEecCCCc------eEEEEEeCCccceeccCccEEecCCcccccceeeeecccc----CCeEEEEECCCCHHHCEEE
Confidence 46799888888 99999999864221 1222211000 0 0135799999999999999
Q ss_pred EEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEE
Q psy670 72 KVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM 151 (540)
Q Consensus 72 ~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~ 151 (540)
+|.+.|.. ..+.|.|.... +. + ...+.+|++++|.|.+.+.|.+.+.|++++..+..
T Consensus 83 ~C~~~n~~----~~~~l~V~~~~----~~----~-----~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------ 139 (363)
T 1wio_A 83 ICEVEDQK----EEVQLLVFGLT----AN----S-----DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------ 139 (363)
T ss_dssp EEEETTEE----EEEEEEEEEEE----ES----S-----CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE------
T ss_pred EEEEEECC----CcEEEEEEeCC----CC----C-----ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc------
Confidence 99998864 35566665311 11 1 12568999999999998899999999998754311
Q ss_pred EEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe
Q psy670 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~ 231 (540)
. ...|.|.+++.+|+|.|+|.+.+..+.....+.+.|.. .|.. +....+.+|+.+.|.|.+
T Consensus 140 -~--------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~-------~p~~---~~~~~~~~G~~v~l~C~~ 200 (363)
T 1wio_A 140 -G--------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA-------FQKA---SSIVYKKEGEQVEFSFPL 200 (363)
T ss_dssp -E--------SSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC-------CSCS---EEEEEEETBCCEEEECCC
T ss_pred -c--------ceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec-------CCCC---CCceEEecCCEEEEEEEE
Confidence 0 12899999999999999999998877767767777664 2221 245667789999999988
Q ss_pred cc-----cCCCeEEEEeCCEEeec--------cCceEEEEecC------CCeEEEEEEEeCCCCCCcEEEEEEEEcC--C
Q psy670 232 SA-----KPRPEVKWFKADKLVKE--------SSKIKIIVNEQ------DDTYEIICEITDPIGPDSGTYRCNVKNE--F 290 (540)
Q Consensus 232 ~~-----~p~~~v~W~~~~~~l~~--------~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~ 290 (540)
.+ +|.+.+.|+++|..+.. .....+..... .......|.|.+++.+|+|.|+|.|.|. .
T Consensus 201 ~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 280 (363)
T 1wio_A 201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT 280 (363)
T ss_dssp CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTT
T ss_pred ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhc
Confidence 77 77889999999987765 22322221100 0111237999999999999999999999 8
Q ss_pred CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCe--EEEEECCEEccCCCceEEEEEecCCe
Q psy670 291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE--IVWFHEGKELQQTDRISWNVTLKGDK 368 (540)
Q Consensus 291 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
|.....+.|.|... .|+.+.|.|.+.+.|.|. +.|+++|..+....
T Consensus 281 g~~~~~~~l~V~~v--------------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~------------ 328 (363)
T 1wio_A 281 GKLHQEVNLVVMRA--------------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK------------ 328 (363)
T ss_dssp CCEEEEEEEEEEEE--------------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEE------------
T ss_pred CeEEEEEeEEEEEe--------------------cCCCeeEEEEEccccCCCccEEEEeCCCceeeee------------
Confidence 88777777777531 288899999999999887 99999997765311
Q ss_pred eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
.|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus 329 ---~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 329 ---REKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp ---SSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred ---eeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 4677888999999999999965 44555555554
No 35
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=1.1e-37 Score=301.81 Aligned_cols=308 Identities=14% Similarity=0.173 Sum_probs=224.9
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecC--------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED--------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 177 (540)
+.+.+|++++|.|.+.+.|.+.+.|+|++..+.. ..++.+..... .....+|.|.+++.+|+|.
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~L~I~~v~~~D~G~ 81 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW--DQGNFPLIIKNLKIEDSDT 81 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHH--HTTCCCEEECSCCGGGCEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccc--cCCeEEEEECCCCHHHCEE
Confidence 4578999999999998889999999999854211 01111100000 1112379999999999999
Q ss_pred EEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEE
Q psy670 178 YRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKII 257 (540)
Q Consensus 178 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~ 257 (540)
|+|.+.+..+ .+.|.|... ...+ ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 82 Y~C~~~n~~~----~~~l~V~~~----------~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----- 141 (363)
T 1wio_A 82 YICEVEDQKE----EVQLLVFGL----------TANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG----- 141 (363)
T ss_dssp EEEEETTEEE----EEEEEEEEE----------EESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEES-----
T ss_pred EEEEEEECCC----cEEEEEEeC----------CCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccccc-----
Confidence 9999987643 455555531 1111 2345689999999999999999999999876542111
Q ss_pred EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc
Q psy670 258 VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337 (540)
Q Consensus 258 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~ 337 (540)
..|.|.+++.+|+|.|+|.+.+..+.....+.+.|...+ .. +....+.+|+.+.|.|.+.+
T Consensus 142 ---------~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p-------~~---~~~~~~~~G~~v~l~C~~~~ 202 (363)
T 1wio_A 142 ---------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ-------KA---SSIVYKKEGEQVEFSFPLAF 202 (363)
T ss_dssp ---------SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCS-------CS---EEEEEEETBCCEEEECCCCC
T ss_pred ---------eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCC-------CC---CCceEEecCCEEEEEEEEec
Confidence 279999999999999999999876665555666665422 11 14556788999999998877
Q ss_pred -----cCCCeEEEEECCEEccC--------CCceEEEEEecC------CeeEEEEEEcCCCCCCCeeEEEEEEcC--Cee
Q psy670 338 -----KPMPEIVWFHEGKELQQ--------TDRISWNVTLKG------DKYHIRLEVKDPRKEDTGLYKCNIKNF--HGE 396 (540)
Q Consensus 338 -----~p~~~i~W~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~--~g~ 396 (540)
.|.+.+.|+++|..+.. ...+........ ......|.|.+++.+|+|.|+|.|.|. .|.
T Consensus 203 ~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~ 282 (363)
T 1wio_A 203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK 282 (363)
T ss_dssp CCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC
T ss_pred ccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe
Confidence 77889999999988765 333322211100 000127999999999999999999999 898
Q ss_pred eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEE
Q psy670 397 LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIEC 476 (540)
Q Consensus 397 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C 476 (540)
....+.|.|.. . .|+.++|.|
T Consensus 283 ~~~~~~l~V~~----------------------------------------------v-------------~g~~~~l~C 303 (363)
T 1wio_A 283 LHQEVNLVVMR----------------------------------------------A-------------TQLQKNLTC 303 (363)
T ss_dssp EEEEEEEEEEE----------------------------------------------E-------------CCCSSSEEE
T ss_pred EEEEEeEEEEE----------------------------------------------e-------------cCCCeeEEE
Confidence 88877777654 1 188899999
Q ss_pred EEeeecCCc--eEEEecCeecCCCCe-EEEEEEecCCeEEEEEEee
Q psy670 477 KVMSMYEPS--VTWMKEKNTVKEDNK-HVVHIEQVKDVSMNFELWL 519 (540)
Q Consensus 477 ~v~g~p~~~--v~W~~~~~~l~~~~~-~~~~~~~~~~g~y~c~~~~ 519 (540)
.+.|.|+|. ++|+|+|..+..+.. ....+...|.|.|+|.+..
T Consensus 304 ~~~g~p~p~~~i~W~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~ 349 (363)
T 1wio_A 304 EVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSD 349 (363)
T ss_dssp EEESSCCTTCCEEEECSSSSCSEEESSSEEEESSCCSEEEEEEECS
T ss_pred EEccccCCCccEEEEeCCCceeeeeeeeeeeeccccceeEEEEEec
Confidence 999999987 999999998865432 3446788899999999994
No 36
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=5.3e-35 Score=273.04 Aligned_cols=269 Identities=23% Similarity=0.426 Sum_probs=222.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+.++|.|.+.+.|.+.+.|+|++..+....+....... ....|.|.+++.+|+|.|+|.+.|..+...
T Consensus 14 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~ 88 (284)
T 2rik_A 14 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE-----NTATLTVLKVTKGDAGQYTCYASNVAGKDS 88 (284)
T ss_dssp CEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEET-----TEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcC-----CEEEEEEecCCcccCEEEEEEEEECCceEE
Confidence 456789999999999999999999999999998777665544221 124899999999999999999999998888
Q ss_pred EEEEEEEecCcCCCCCCCeeccC-CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
..+.|.|.. +|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+............. ...|
T Consensus 89 ~~~~l~V~~-------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~L 157 (284)
T 2rik_A 89 CSAQLGVQE-------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVL 157 (284)
T ss_dssp EEEEEEEEC-------CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETT----EEEE
T ss_pred EEEEEEccC-------CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCC----EEEE
Confidence 888888875 5555433 334567789999999999999999999999999988766655443321 2479
Q ss_pred EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC
Q psy670 270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG 349 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~ 349 (540)
.|.+++.+|+|.|+|.+.|..|.....+.|.|.. +|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++
T Consensus 158 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~ 230 (284)
T 2rik_A 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 230 (284)
T ss_dssp EECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETT
T ss_pred EECCCCcccCEEEEEEEEcCCCceeEEEEEEEec-------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECC
Confidence 9999999999999999999999888888888876 556655666677889999999999999999999999999
Q ss_pred EEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 350 KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
..+....++.... ++. ...|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 231 ~~~~~~~~~~~~~--~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 231 RELRSGKKYKIMS--ENF--LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEECBTTTEEEEE--ETT--EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EECcCCCCEEEEE--cCC--EEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 9998777655432 222 3389999999999999999999999999999988875
No 37
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=2.9e-34 Score=268.01 Aligned_cols=259 Identities=23% Similarity=0.445 Sum_probs=214.6
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.|.|. +.+.|+|+|..+..+.++++....+. .+|.|.+++.+|+|.|+|.+.|..|..+..+.
T Consensus 25 l~C~~~g~p~------~~v~W~~~~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~ 92 (284)
T 2rik_A 25 FKCHVTGTAP------IKITWAKDNREIRPGGNYKMTLVENT------ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 92 (284)
T ss_dssp EEEEEESSSC------CEEEEEETTEECCSSSSEEEEEETTE------EEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEcCCC------CEEEEEECCEECcCCCcEEEEEcCCE------EEEEEecCCcccCEEEEEEEEECCceEEEEEE
Confidence 5699999887 89999999999988888887765443 69999999999999999999999988888888
Q ss_pred EEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEE
Q psy670 88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI 167 (540)
Q Consensus 88 l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 167 (540)
|.|...+..+. . ......+.+|+.+.|.|.+.+.|.+.+.|++++..+....+....... ....|.|
T Consensus 93 l~V~~~p~~~~-~-------~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~L~i 159 (284)
T 2rik_A 93 LGVQEPPRFIK-K-------LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-----SVAVLEM 159 (284)
T ss_dssp EEEECCCEEEE-C-------CCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEET-----TEEEEEE
T ss_pred EEccCCCcccc-c-------CCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcC-----CEEEEEE
Confidence 88876552111 1 122346789999999999999999999999999998776655543221 1348999
Q ss_pred cCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEE
Q psy670 168 NNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL 247 (540)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~ 247 (540)
.+++.+|+|.|+|.+.|..|.....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus 160 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~ 232 (284)
T 2rik_A 160 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE 232 (284)
T ss_dssp CSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEE
T ss_pred CCCCcccCEEEEEEEEcCCCceeEEEEEEEec-------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEE
Confidence 99999999999999999999888888998885 66666667777788999999999999999999999999999
Q ss_pred eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
+.....+.+..... ...|.|.+++.+|.|.|+|.|.|..|.....+.|.|.
T Consensus 233 ~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 233 LRSGKKYKIMSENF----LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp ECBTTTEEEEEETT----EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CcCCCCEEEEEcCC----EEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 98777665543321 2479999999999999999999999988888877764
No 38
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=1.5e-35 Score=294.81 Aligned_cols=351 Identities=16% Similarity=0.207 Sum_probs=227.8
Q ss_pred CccccCCCeEEEEEEEeecCC----CceEEEeCC--Eeec------------CCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPM----PDIIWYQGT--KVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
...+.+|++++|.|.+.+.+. +.+.|+|++ ..+. ...++.... .....+|.|.+++.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~ 84 (438)
T 1qgc_4 10 SLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG-----SRTDFTLTIDPVEA 84 (438)
T ss_dssp EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE-----ETTEEEEEESSCCG
T ss_pred eEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc-----cCCcEEEEeCCCcC
Confidence 356789999999999977776 489999963 2210 122333322 11234899999999
Q ss_pred CCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEee
Q psy670 173 DDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVK 249 (540)
Q Consensus 173 ~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~ 249 (540)
+|+|.|+|.+.+..+.. ...+.|.|.... .+|.+...+......+|+.+.|.|.+.+ .|.+ .+.|+++|..+.
T Consensus 85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~ 160 (438)
T 1qgc_4 85 DDVATYYCQQSNEVPLTFGAGTKLDLKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ 160 (438)
T ss_dssp GGCEEEEEEECSSTTCCBCCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred cCCeeEEEEEecCCCccccCceeEEecCCC----CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcC
Confidence 99999999999987642 334556664321 2555544332222335789999999987 6777 899999999886
Q ss_pred ccCceEEEEe-cCCCe--EEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC
Q psy670 250 ESSKIKIIVN-EQDDT--YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326 (540)
Q Consensus 250 ~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g 326 (540)
.......... ...+. ..+.|.|.++..+|+|.|+|.|.|..+.... .+.+.... ++..+..+....+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~v~~G 233 (438)
T 1qgc_4 161 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRNE-----CEVMLVESGGGLVKPG 233 (438)
T ss_dssp TTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETTC------CCEEEEECCEEECTT
T ss_pred CCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce--eccccccc-----ceeEEecCCceEEecC
Confidence 5521111111 12222 2458999999999999999999998776533 23332211 2223334556678899
Q ss_pred CeEEEEEEEEccC--CCeEEEEEC--CEEcc-----------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670 327 KLVVMECKVKAKP--MPEIVWFHE--GKELQ-----------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385 (540)
Q Consensus 327 ~~v~l~C~~~~~p--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 385 (540)
+.+.|.|.+.|.| .+.+.|+++ +..+. ...++... .++......|.|.+++.+|+|.
T Consensus 234 ~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~D~G~ 311 (438)
T 1qgc_4 234 GSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTIS--RDNAKNTLYLQMSSLRSADTAM 311 (438)
T ss_dssp CCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEE--EETTTTEEEEEECSCCGGGCCE
T ss_pred CcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEE--eecCCCeEEEEECCCChhhCEE
Confidence 9999999999988 679999996 43321 12333322 2222224489999999999999
Q ss_pred EEEEEEcCCe-----eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC
Q psy670 386 YKCNIKNFHG-----ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV 460 (540)
Q Consensus 386 Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~ 460 (540)
|+|.|.|..+ .......|.|... ...+|.+...
T Consensus 312 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~------------------------------------------~~~~P~v~~~ 349 (438)
T 1qgc_4 312 YYCVRREDGGDEGFAYWGQGTVVTVSAA------------------------------------------KTTPPSVYPL 349 (438)
T ss_dssp EEEEECCSSSCCCCCSBCCCEEEEECSS------------------------------------------CCBCCEEEEE
T ss_pred EEEEEEccCCCccceeeCCCEEEEEecC------------------------------------------CCCCCeEEEc
Confidence 9999998544 2223345555420 0114444332
Q ss_pred CcEEEecCCCeEEEEEEEeee-cCC-ceEEEecCeecCCC--------CeE----EEEEEe---cCCeEEEEEEeeeee
Q psy670 461 PKVVTISKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKED--------NKH----VVHIEQ---VKDVSMNFELWLGIV 522 (540)
Q Consensus 461 ~~~~~~~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~--------~~~----~~~~~~---~~~g~y~c~~~~~~~ 522 (540)
+....+.+|+.++|.|.+.|. |.+ .|+|+++|..+... ..+ .+.+.. .+ |.|+|.+.....
T Consensus 350 ~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g 427 (438)
T 1qgc_4 350 APGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS 427 (438)
T ss_dssp CCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGG
T ss_pred CcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCC
Confidence 222345689999999999997 887 99999999876521 211 123333 24 888888876543
No 39
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=265.70 Aligned_cols=279 Identities=23% Similarity=0.360 Sum_probs=203.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+.+.|.|.+.|.|.+.+.|+|+|..+... +........+ ....|.|.+++. +|+|.|+|.+.|..|..
T Consensus 15 ~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~---~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~ 90 (304)
T 2yd9_A 15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDES---AGAVLRIQPLRTPRDENVYECVAQNSVGEI 90 (304)
T ss_dssp CEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTT---TEEEEEECSCCTTTTCSEEEEEEECSSCEE
T ss_pred ceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCC---CceEEEEecccccCCCeEEEEEEECCCCeE
Confidence 456789999999999999999999999999888543 3333322111 124899999998 99999999999999988
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc-eEEEEecCCCeEEEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK-IKIIVNEQDDTYEII 268 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 268 (540)
...+.|.|...+..+...|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..+... ..+ .
T Consensus 91 ~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~----~ 165 (304)
T 2yd9_A 91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL-RSG----A 165 (304)
T ss_dssp CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC-TTS----C
T ss_pred EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC-CCe----E
Confidence 8888888886543222236677677777788999999999999999999999999998865432 111111 111 6
Q ss_pred EEEeCCCCCCcEEEEEEEEcCCCCeeee-EEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEE
Q psy670 269 CEITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347 (540)
Q Consensus 269 l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~ 347 (540)
|.|.+++.+|+|.|+|.+.|..|..... ..+.|.... .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++
T Consensus 166 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~----~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~ 241 (304)
T 2yd9_A 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN----VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ 241 (304)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC----EEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEE
T ss_pred EEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec----cCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEE
Confidence 9999999999999999999988765433 455554311 15667767766778899999999999999999999999
Q ss_pred CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEE
Q psy670 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~ 412 (540)
+|..+....... .+ ...|.|.++ +|+|.|+|.|.|..|....++.|.|...+...
T Consensus 242 ~~~~l~~~~~~~-----~~---~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 296 (304)
T 2yd9_A 242 GAEDLTPEDDMP-----VG---RNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKAG 296 (304)
T ss_dssp TTEECSCSSSCC-----BS---EEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--------
T ss_pred CCEECCCccccc-----CC---cEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcccc
Confidence 999987654321 11 226777766 59999999999999999999999998755433
No 40
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=4.5e-34 Score=284.29 Aligned_cols=369 Identities=14% Similarity=0.144 Sum_probs=226.9
Q ss_pred ccceeeeCcceeEEeecceeeeeecC--eecc-----------------cCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK-----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD 67 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 67 (540)
.+.|.+.|.+. +.+.+.|||+. ..+. ...|+.+.....+ ...+|.|.+++.+|
T Consensus 19 ~L~C~~~~~~~----~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D 90 (444)
T 1igt_B 19 KLSCATSGFTF----SDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAK----NTLYLQMSRLKSED 90 (444)
T ss_dssp EEEEEEESSCG----GGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTT----TEEEEEECSCCGGG
T ss_pred EEEEEcCCCcc----CCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCC----CeEEEEECCCCHHH
Confidence 46799988752 12789999863 3211 1245555433211 24689999999999
Q ss_pred CeeEEEEEEccCcc---eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-ceEEEeCCE
Q psy670 68 SGEYKVIAKNKNGE---GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP-DIIWYQGTK 141 (540)
Q Consensus 68 ~G~Y~C~~~~~~~~---~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~ 141 (540)
+|.|+|.+.+..+. ....+.|.|.... ..+.+.. ......+.+|+.++|.|.+.|. |.+ .+.|++++.
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~------~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 164 (444)
T 1igt_B 91 TAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYP------LAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 164 (444)
T ss_dssp CEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEE------ECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeE------ecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence 99999999987654 2234566665321 0111110 0111224789999999999875 776 999999887
Q ss_pred eecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecC-----------cCCCCCCCee
Q psy670 142 VIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG-----------ENGAGFAPSF 210 (540)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-----------~~~~~~~p~~ 210 (540)
.+.......... .+.....+.|.|.++..+| |.|+|.+.|..+.......+.+.+. ......+|.+
T Consensus 165 ~~~~~~~~~~~~--~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v 241 (444)
T 1igt_B 165 SSGVHTFPAVLQ--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV 241 (444)
T ss_dssp CTTEEECCCEEE--TTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred CCCeEecCcccc--CCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence 531100000000 0222233579999999999 9999999999887654444433110 0011124444
Q ss_pred -ccCCceee-cCCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670 211 -IEKPRIIP-NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYR 283 (540)
Q Consensus 211 -~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~ 283 (540)
...+.... +.+|+.+.|.|.+.+.+ .+.+.|++++..+......... .........+.|.|.+++.+|+|.|+
T Consensus 242 ~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~ 321 (444)
T 1igt_B 242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFK 321 (444)
T ss_dssp EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEE
T ss_pred EecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEE
Confidence 33333333 57899999999999873 3689999999887543322111 11112234568999999999999999
Q ss_pred EEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCCceEEE
Q psy670 284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTDRISWN 361 (540)
Q Consensus 284 C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~~~~~~ 361 (540)
|.|.|..+.......+.+.. ....+|.+...+.......+..++|.|.+.| .|.+ .|.|+++|..+.........
T Consensus 322 C~a~n~~~~~~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~ 398 (444)
T 1igt_B 322 CKVNNKDLPAPIERTISKPK---GSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPV 398 (444)
T ss_dssp EEEECTTCSSCEEEEEECCC---CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCE
T ss_pred EEEEcCCCCCceEEEEeccC---CCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccce
Confidence 99999887663333332200 0122565543332211223445999999998 5665 89999999988432111111
Q ss_pred EEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 362 VTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 362 ~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
...++. ...+.|.|.....+|.|.|+|.|.|...
T Consensus 399 ~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 399 LDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp ECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred eCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 122222 2234678877777789999999999753
No 41
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=4.7e-34 Score=284.22 Aligned_cols=363 Identities=16% Similarity=0.234 Sum_probs=224.9
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.+ .+.+.|+|+ +..+. ...++.+.... ....++|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~ 85 (444)
T 1igt_B 9 GGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDN---AKNTLYLQMSR 85 (444)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred CeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeC---CCCeEEEEECC
Confidence 35688999999999998764 568999985 22210 12344443221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670 170 PTKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA 244 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~ 244 (540)
++.+|+|.|.|.+.+..+. ....+.|.|..... .+|.+...+....+.+|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 162 (444)
T 1igt_B 86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKT---TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 162 (444)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCC---BCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCC---CCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecC
Confidence 9999999999999987543 22335666653211 1344432222233578999999999988 4776 9999998
Q ss_pred CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec-----------cCCCCCCCe
Q psy670 245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE-----------AEPEGDPPT 313 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~-----------~~~~~~~p~ 313 (540)
+..+......... ........+.|.|.++..+| |.|+|.|.|..+.......+.+... ......+|.
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 240 (444)
T 1igt_B 163 SLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPS 240 (444)
T ss_dssp TBCTTEEECCCEE-ETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCE
T ss_pred CCCCCeEecCccc-cCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCce
Confidence 8753211000000 11111223479999999889 9999999999887544443332100 000112455
Q ss_pred E-EeCCceEE-eeCCCeEEEEEEEEccC----CCeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeE
Q psy670 314 F-IEKPKIRS-EQGGKLVVMECKVKAKP----MPEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLY 386 (540)
Q Consensus 314 ~-~~~~~~~~-~~~g~~v~l~C~~~~~p----~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y 386 (540)
+ +..+.... +.+|+.++|.|.+.|.+ .+.|.|+++|..+............++. ...++|.|.++..+|+|.|
T Consensus 241 v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 320 (444)
T 1igt_B 241 VFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF 320 (444)
T ss_dssp EEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred EEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence 4 44343332 47899999999999974 3599999999988654332211111221 2345899999999999999
Q ss_pred EEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEe
Q psy670 387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTI 466 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~ 466 (540)
+|.|.|..+.......+.+.. ....+|.+...+.....
T Consensus 321 ~C~a~n~~~~~~~~~~v~~~~------------------------------------------~~~~~P~v~~~~~~~~~ 358 (444)
T 1igt_B 321 KCKVNNKDLPAPIERTISKPK------------------------------------------GSVRAPQVYVLPPPEEE 358 (444)
T ss_dssp EEEEECTTCSSCEEEEEECCC------------------------------------------CCCBCCEEEEECCCGGG
T ss_pred EEEEEcCCCCCceEEEEeccC------------------------------------------CCCCCCEEEEeCCChHH
Confidence 999999988663333332100 01125655432221112
Q ss_pred cCCCeEEEEEEEeee-cCC-ceEEEecCeecCCC----------CeEE----EEEEecC---CeEEEEEEeeeeee
Q psy670 467 SKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKED----------NKHV----VHIEQVK---DVSMNFELWLGIVE 523 (540)
Q Consensus 467 ~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~----------~~~~----~~~~~~~---~g~y~c~~~~~~~~ 523 (540)
..++.++|.|.+.|. |++ +|+|+|+|..+... ..+. +.+...+ .|.|+|.+....+.
T Consensus 359 ~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~ 434 (444)
T 1igt_B 359 MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH 434 (444)
T ss_dssp TTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred ccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence 234459999999995 555 99999999877421 1111 2333333 78899988865543
No 42
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=1.3e-32 Score=257.83 Aligned_cols=270 Identities=20% Similarity=0.342 Sum_probs=205.2
Q ss_pred CccccCCCeEEEEEEEeecC-CCceEEEe-CCEeecC-CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 111 PTIHQDGDLLVMECVLEASP-MPDIIWYQ-GTKVIED-TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
...+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+.. ..+....... .....|.|.+++.+|+|.|+|.+.+..+
T Consensus 11 ~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y~C~~~n~~g 86 (291)
T 1qz1_A 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTAEDG 86 (291)
T ss_dssp SEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred CceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEEEEEEEcCCC
Confidence 45688999999999998876 68999999 7777653 3344333211 1234899999999999999999999885
Q ss_pred e-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 188 E-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 188 ~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
. ....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............
T Consensus 87 ~~~~~~~~l~v~~-------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----- 154 (291)
T 1qz1_A 87 TQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN----- 154 (291)
T ss_dssp CEEEEEEEEEEEC-------CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTT-----
T ss_pred CeeEEEEEEEeec-------cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccC-----
Confidence 4 46677787774 6666666777778899999999999999999999999998875443222222222
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCCCe--eeeEEEEEeeccCCCCCCCeEEeCC--ceEEeeCCCeEEEEEEEEccCCCe
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFGES--NANLNLNIEAEAEPEGDPPTFIEKP--KIRSEQGGKLVVMECKVKAKPMPE 342 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~~~p~~~ 342 (540)
..|.|.+++.+|+|.|+|.+.|..+.. ...+.+.|.. +|.+...+ ....+..|+.+.|.|.+.|.|.+.
T Consensus 155 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~ 227 (291)
T 1qz1_A 155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV-------PPTVQARQSIVNATANLGQSVTLVCDADGFPEPT 227 (291)
T ss_dssp SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE-------EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCE
T ss_pred CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec-------CCcccccccccccccccCceEEEEEEEEEeCCCc
Confidence 169999999999999999999875443 3345555554 45554433 244677899999999999999999
Q ss_pred EEEEECCEEccCCCc--eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 343 IVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 343 i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+.|+++|..+..... .......++. .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 228 i~W~~~g~~~~~~~~~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 228 MSWTKDGEPIENEEEDDEKHIFSDDSS----ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEEETTEECCCC--CCSSEEECTTSC----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEECCEECcCCCCCCcceEEcCCCc----EEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 999999999876542 1222222222 799999999999999999999999999999988864
No 43
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=100.00 E-value=2.6e-32 Score=273.81 Aligned_cols=369 Identities=13% Similarity=0.147 Sum_probs=222.9
Q ss_pred ccceeeeCcceeEEeecceeeeeecC--eecc-----------------cCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK-----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD 67 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 67 (540)
.+.|.+.|.+. +.+.+.|||+. ..+. ...|+.+.....+ ...+|.|.+++.+|
T Consensus 20 ~L~C~~~~~~~----~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D 91 (475)
T 1iga_A 20 KVSCKASGYSF----TSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSA----TTAYMGLSSLRPED 91 (475)
T ss_pred EEEEEecCCCC----CCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCC----CeEEEEECCCChhh
Confidence 46688887652 12789999963 2110 1234444332111 23689999999999
Q ss_pred CeeEEEEEEccCcc------eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC-C-ceEEE
Q psy670 68 SGEYKVIAKNKNGE------GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM-P-DIIWY 137 (540)
Q Consensus 68 ~G~Y~C~~~~~~~~------~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~-~-~v~W~ 137 (540)
+|.|.|.+.+..+. ....+.|.|.... ..+.+. ...+..+.+|+.++|.|.+.|. |. + .|.|+
T Consensus 92 ~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~-------~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~ 164 (475)
T 1iga_A 92 TAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVF-------PLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWS 164 (475)
T ss_pred CEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEE-------ecCccccCCCCeEEEEEEEeeecCCCceEEEEc
Confidence 99999999987652 2234566665311 111111 1111223689999999999886 65 5 99999
Q ss_pred eCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcC-----------CCC
Q psy670 138 QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGEN-----------GAG 205 (540)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~-----------~~~ 205 (540)
+++................+.....+.|.|..+..+|+|.|+|.+.|..+.. ...+.+.|...+. ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~ 244 (475)
T 1iga_A 165 ESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSC 244 (475)
T ss_pred CCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCC
Confidence 9875321100000000011222233479999999999999999999987642 3334433311000 000
Q ss_pred CCCee-ccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcE
Q psy670 206 FAPSF-IEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSG 280 (540)
Q Consensus 206 ~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g 280 (540)
.+|.+ ...+....+.+|+.+.|.|.+.+.++ +.|.| ++..+......... .........+.|.|.+++.+|+|
T Consensus 245 ~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G 322 (475)
T 1iga_A 245 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK 322 (475)
T ss_pred CCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCC
Confidence 13333 33333334578999999999998644 68999 44433322111111 11111224457999999999999
Q ss_pred EEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC-ceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCc
Q psy670 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP-KIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDR 357 (540)
Q Consensus 281 ~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~ 357 (540)
.|+|.|.|..+.......+.+.. ...+|.+...+ ....+.+|+.+.|.|.+.|. | .+.|.|+++|..+.....
T Consensus 323 ~Y~C~a~n~~~~~~~~~~v~~~~----~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~ 398 (475)
T 1iga_A 323 TFTCTAAYPESKTPLTATLSKSG----NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKY 398 (475)
T ss_pred cEEEEEEcCCCCCceEEEeecCC----CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCce
Confidence 99999999888754444443211 11255554333 22335689999999999986 4 349999999999876531
Q ss_pred eEE--EEE---ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 358 ISW--NVT---LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 358 ~~~--~~~---~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
... ... .++. ...+.|.|.....+|.|.|+|.|.|....
T Consensus 399 ~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 399 LTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred eecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 111 111 1121 23457888888888999999999997643
No 44
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=100.00 E-value=1.8e-33 Score=280.90 Aligned_cols=369 Identities=13% Similarity=0.175 Sum_probs=218.4
Q ss_pred ccceeeeCcceeEEeecceeeeeecC--ee---c--------------ccCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKG--SL---L--------------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD 67 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~---l--------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 67 (540)
.+.|.+.|.|. +.+.+.|||+. .. + ....|+.+.....+ ..++|.|.+++.+|
T Consensus 19 ~L~C~~~~~~~----~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D 90 (457)
T 1hzh_H 19 KVSCQASGYRF----SNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA----NTAYMELRSLRSAD 90 (457)
T ss_dssp EECEEEESSCG----GGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT----TEEEEEECSCCGGG
T ss_pred EEEEEecCccc----cCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCC----CEEEEEECCCCccc
Confidence 46799988762 12789999853 21 1 01345555433221 23689999999999
Q ss_pred CeeEEEEEEccCc------------ceeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC-C
Q psy670 68 SGEYKVIAKNKNG------------EGSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM-P 132 (540)
Q Consensus 68 ~G~Y~C~~~~~~~------------~~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~-~ 132 (540)
+|.|+|.+.+..+ .....+.|.|...+ ..+.+. .......+.+|+.++|.|.+.+. |. +
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~------~~~~~~~~~~g~~v~L~C~~~g~~P~~~ 164 (457)
T 1hzh_H 91 TAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVF------PLAPSSKSTSGGTAALGCLVKDYFPEPV 164 (457)
T ss_dssp CEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEE------EECCCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred CEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEE------ecCccccccCCCcEEEEEEEeEEeCCCe
Confidence 9999999998765 22344566665421 011111 00111235789999999999876 65 7
Q ss_pred ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcC----------
Q psy670 133 DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN---------- 202 (540)
Q Consensus 133 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~---------- 202 (540)
.+.|++++..+... .........+.....+.|.|.++..+| |.|+|.+.|..+.......+.+.....
T Consensus 165 ~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 242 (457)
T 1hzh_H 165 TVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAP 242 (457)
T ss_dssp EEEETTTTBCTTEE-EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCC
T ss_pred EEEEEeCCEeccce-EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCc
Confidence 89999998654211 111111111222334589999999999 999999999877655444444332110
Q ss_pred CCCCCCee-ccCCceee-cCCCCeEEEEEEecccCCC----eEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCC
Q psy670 203 GAGFAPSF-IEKPRIIP-NESGTLIQMKCKCSAKPRP----EVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDP 274 (540)
Q Consensus 203 ~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~ 274 (540)
....+|.+ ...+.... +.+|+.+.|.|.+.+.|++ .+.|++++..+........ .....+... ..|.|...
T Consensus 243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~-~~~~~g~~~~~~~l~i~~~ 321 (457)
T 1hzh_H 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVLHQ 321 (457)
T ss_dssp CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEE-EECTTSCEEEEEEECCCHH
T ss_pred cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccc-eecCCCcEEEEEEEEECHH
Confidence 00113443 33333222 6689999999999987543 8999999988754322211 111222221 22333222
Q ss_pred CCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC-ceEEeeCCCeEEEEEEEEccCCC--eEEEEECCEE
Q psy670 275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP-KIRSEQGGKLVVMECKVKAKPMP--EIVWFHEGKE 351 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~~~~ 351 (540)
..+|+|.|+|.|.|..+.......+.+.. ....+|.+...+ ....+..|+ +.|.|.+.|.+++ .|.|+++|..
T Consensus 322 d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~ 397 (457)
T 1hzh_H 322 DWLNGKEYKCKVSNKALPAPIEKTISKAK---GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQP 397 (457)
T ss_dssp HHHHTCCEEEEEECTTSSSCEEEEECCCC---CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred HccCCCcEEEEEeCCCCCCcceEEEEccc---CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEE
Confidence 22339999999998755443333332210 011255554433 222234455 9999999996443 8999999998
Q ss_pred ccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 352 LQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+............++. ...+.|.|.....+|+|.|+|.|.|....
T Consensus 398 l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 398 ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 443 (457)
T ss_dssp CCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence 8643221111122222 22346777776667899999999997643
No 45
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=100.00 E-value=1.2e-33 Score=282.35 Aligned_cols=362 Identities=13% Similarity=0.205 Sum_probs=218.2
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeC--CEe---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|+ +.. +. ...++.+..+. ....++|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~ 85 (457)
T 1hzh_H 9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT---SANTAYMELRS 85 (457)
T ss_dssp CEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred ceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeC---CCCEEEEEECC
Confidence 45688999999999998776 678999984 221 10 12344333221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCc------------eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC
Q psy670 170 PTKDDGGNYRCNACNSIG------------ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR 236 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~ 236 (540)
++.+|+|.|+|.+.+..+ .....+.|.|..... .+|.+...+....+.+|+.+.|.|.+.+. |.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~ 162 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 162 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCC---BCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCC---CCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence 999999999999998754 122345666654211 24444433333446789999999999885 65
Q ss_pred -CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc---------C
Q psy670 237 -PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA---------E 306 (540)
Q Consensus 237 -~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~---------~ 306 (540)
+.|.|++++..+...........+......+.|.|.++..+| |.|+|.|.|..+.......+.+.... .
T Consensus 163 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~ 241 (457)
T 1hzh_H 163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPA 241 (457)
T ss_dssp CCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCC
T ss_pred CeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCC
Confidence 799999998654211111111111112234579999999889 99999999977664443333322110 0
Q ss_pred C-CCCCCeE-EeCCceEE-eeCCCeEEEEEEEEccCCC----eEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcC
Q psy670 307 P-EGDPPTF-IEKPKIRS-EQGGKLVVMECKVKAKPMP----EIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKD 377 (540)
Q Consensus 307 ~-~~~~p~~-~~~~~~~~-~~~g~~v~l~C~~~~~p~~----~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~ 377 (540)
+ ...+|.+ +..+.... +.+|+.+.|.|.+.|.|++ .|.|++++..+........ ....++.+ .+.|.|..
T Consensus 242 ~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~-~~~~~g~~~~~~~l~i~~ 320 (457)
T 1hzh_H 242 PELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVLH 320 (457)
T ss_dssp CCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEE-EECTTSCEEEEEEECCCH
T ss_pred ccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccc-eecCCCcEEEEEEEEECH
Confidence 0 1114444 33333222 5679999999999997553 9999999988754322111 11222221 12333333
Q ss_pred CCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeecee
Q psy670 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVI 457 (540)
Q Consensus 378 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 457 (540)
...+|+|.|+|.|.|..+.......+.+.. ....+|.+
T Consensus 321 ~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~------------------------------------------~~~~~P~v 358 (457)
T 1hzh_H 321 QDWLNGKEYKCKVSNKALPAPIEKTISKAK------------------------------------------GQPREPQV 358 (457)
T ss_dssp HHHHHTCCEEEEEECTTSSSCEEEEECCCC------------------------------------------CCCBCCEE
T ss_pred HHccCCCcEEEEEeCCCCCCcceEEEEccc------------------------------------------CCCCCCeE
Confidence 333349999999998765543333332200 01125555
Q ss_pred ecCC-cEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCC----------CeEE----EEEEe---cCCeEEEEEE
Q psy670 458 REVP-KVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKED----------NKHV----VHIEQ---VKDVSMNFEL 517 (540)
Q Consensus 458 ~~~~-~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~----------~~~~----~~~~~---~~~g~y~c~~ 517 (540)
...+ ....+..|+ ++|.|.+.|.+++ .|+|+|+|..+... ..+. +.+.. .+.|.|+|.+
T Consensus 359 ~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a 437 (457)
T 1hzh_H 359 YTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV 437 (457)
T ss_dssp EEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEE
T ss_pred EEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEE
Confidence 4332 212233455 9999999997654 89999999988532 1111 22333 3579999999
Q ss_pred eeeeee
Q psy670 518 WLGIVE 523 (540)
Q Consensus 518 ~~~~~~ 523 (540)
....+.
T Consensus 438 ~n~~l~ 443 (457)
T 1hzh_H 438 MHEALH 443 (457)
T ss_dssp ECTTSG
T ss_pred EECCCC
Confidence 875543
No 46
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=100.00 E-value=6.3e-32 Score=270.95 Aligned_cols=362 Identities=11% Similarity=0.177 Sum_probs=220.1
Q ss_pred CCccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEc
Q psy670 110 KPTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEIN 168 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~ 168 (540)
....+.+|++++|.|.+.+.+ ...+.|||+. ..+. ...++.+... .....++|.|.
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~ 85 (475)
T 1iga_A 9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRD---TSATTAYMGLS 85 (475)
T ss_pred CcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEc---CCCCeEEEEEC
Confidence 356788999999999997664 5689999952 2110 0123332221 11234589999
Q ss_pred CCCCCCCeEEEEEEEcCCce------eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-C-eE
Q psy670 169 NPTKDDGGNYRCNACNSIGE------SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-P-EV 239 (540)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~-~v 239 (540)
+++.+|+|.|.|.+.+..+. ....+.|.|..... .+|.+...+. ..+.+|+.+.|.|.+.+. |. + .|
T Consensus 86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v 161 (475)
T 1iga_A 86 SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASP---TSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSV 161 (475)
T ss_pred CCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCC---cCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEE
Confidence 99999999999999987652 22345666663111 1344433221 123689999999999985 65 4 99
Q ss_pred EEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeecc-----------C
Q psy670 240 KWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEA-----------E 306 (540)
Q Consensus 240 ~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~-----------~ 306 (540)
.|++++............ ..+......+.|.|..+..+|.|.|+|.|.|..+.. ...+.+.|...+ .
T Consensus 162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~ 241 (475)
T 1iga_A 162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPS 241 (475)
T ss_pred EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCC
Confidence 999987532111000000 011112223468888888899999999999987632 222222221100 0
Q ss_pred CCCCCCeE-EeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCC
Q psy670 307 PEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKE 381 (540)
Q Consensus 307 ~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~ 381 (540)
+...+|.+ +..+....+.+|+.+.|.|.+.|.++ +.|.| ++..+............++. ...+.|.|.++..+
T Consensus 242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~ 319 (475)
T 1iga_A 242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN 319 (475)
T ss_pred CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhc
Confidence 00014444 33333333578999999999998754 58999 44444322111111111111 23457999999999
Q ss_pred CCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC-
Q psy670 382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV- 460 (540)
Q Consensus 382 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~- 460 (540)
|+|.|+|.|.|..+.......|.+.. ...+|.+...
T Consensus 320 d~G~Y~C~a~n~~~~~~~~~~v~~~~-------------------------------------------~~~~P~v~~~~ 356 (475)
T 1iga_A 320 HGKTFTCTAAYPESKTPLTATLSKSG-------------------------------------------NTFRPEVHLLP 356 (475)
T ss_pred cCCcEEEEEEcCCCCCceEEEeecCC-------------------------------------------CCCCCeEEEEC
Confidence 99999999999988754444443211 0125665443
Q ss_pred CcEEEecCCCeEEEEEEEeeecC--CceEEEecCeecCCCC---------------eE----EEEEEe---cCCeEEEEE
Q psy670 461 PKVVTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKEDN---------------KH----VVHIEQ---VKDVSMNFE 516 (540)
Q Consensus 461 ~~~~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~~---------------~~----~~~~~~---~~~g~y~c~ 516 (540)
+....+.+|+.++|.|.+.|.++ +.|+|+|+|..+..+. .+ .+.+.. .+.|.|+|.
T Consensus 357 ~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~ 436 (475)
T 1iga_A 357 PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM 436 (475)
T ss_pred CChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEE
Confidence 22234678999999999999644 4999999999875431 11 122333 347999999
Q ss_pred Eeeeeee
Q psy670 517 LWLGIVE 523 (540)
Q Consensus 517 ~~~~~~~ 523 (540)
+....+.
T Consensus 437 a~n~~l~ 443 (475)
T 1iga_A 437 VGHEALP 443 (475)
T ss_pred EEcCCCC
Confidence 9865543
No 47
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=5e-32 Score=255.39 Aligned_cols=268 Identities=20% Similarity=0.372 Sum_probs=201.2
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCC-CCcEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG-PDSGTYRC 284 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C 284 (540)
.+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +........+. ...|.|.+++. +|+|.|+|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~--~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESA--GAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTT--EEEEEECSCCTTTTCSEEEE
T ss_pred cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCC--ceEEEEecccccCCCeEEEE
Confidence 3788888888888999999999999999999999999999887543 33322222211 24799999998 99999999
Q ss_pred EEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc-eEEEEE
Q psy670 285 NVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR-ISWNVT 363 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~ 363 (540)
.+.|..|.....+.|.|...+......|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ......
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~ 161 (304)
T 2yd9_A 82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161 (304)
T ss_dssp EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC
T ss_pred EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC
Confidence 9999998888888888876543333347777778788899999999999999999999999999998865421 112111
Q ss_pred ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE-EEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcc
Q psy670 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN-LTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQ 442 (540)
Q Consensus 364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (540)
..+ .|.|.+++.+|+|.|+|.|.|..|..... ..|.|..
T Consensus 162 -~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~----------------------------------- 201 (304)
T 2yd9_A 162 -RSG----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV----------------------------------- 201 (304)
T ss_dssp -TTS----CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----------------------------------
T ss_pred -CCe----EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEe-----------------------------------
Confidence 222 79999999999999999999999876533 4555542
Q ss_pred cccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCe-----EEEE-EEecCCeEEEEE
Q psy670 443 FKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNK-----HVVH-IEQVKDVSMNFE 516 (540)
Q Consensus 443 ~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~-----~~~~-~~~~~~g~y~c~ 516 (540)
...+|.+...+....+.+|+.++|.|.+.|.|.|.++|+++|..+..+.. ..+. ....|.|.|+|.
T Consensus 202 --------~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~ 273 (304)
T 2yd9_A 202 --------QNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCV 273 (304)
T ss_dssp --------CCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSCCSCEEEEEE
T ss_pred --------eccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEcccccCEEEEEE
Confidence 01267777777777888999999999999999999999999998865432 2232 334679999999
Q ss_pred Eeeeeeee
Q psy670 517 LWLGIVEK 524 (540)
Q Consensus 517 ~~~~~~~~ 524 (540)
+.+.....
T Consensus 274 a~N~~G~~ 281 (304)
T 2yd9_A 274 AMSSLGVI 281 (304)
T ss_dssp EEETTEEE
T ss_pred EEeCCCcE
Confidence 99755444
No 48
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=6e-33 Score=263.51 Aligned_cols=275 Identities=18% Similarity=0.299 Sum_probs=207.8
Q ss_pred ccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+.+|+.+.|.|.+.+. |.+.+.|+|+|..+....+..+.. ....|.|.+++.+|+|.|+|.+.+..+...
T Consensus 16 ~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 88 (317)
T 2y25_A 16 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTLLITEFSKKDAGIYEVILKDDRGKDK 88 (317)
T ss_dssp EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------------CCEEEEETTCCSTTCSCEEEEEESSSCEEE
T ss_pred EEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEEC-------CeEEEEEccCCcccCeEEEEEEECCCCcEE
Confidence 467899999999999877 778999999999987665544331 124899999999999999999999988877
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc----------cCCCeEEEEeCCEEeeccCceEEEEec
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA----------KPRPEVKWFKADKLVKESSKIKIIVNE 260 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~~~v~W~~~~~~l~~~~~~~~~~~~ 260 (540)
..+.|.|.. .|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+....+.......
T Consensus 89 ~~~~l~v~~-------~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 161 (317)
T 2y25_A 89 SRLKLVDEA-------FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG 161 (317)
T ss_dssp EEECCSTHH-------HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS
T ss_pred EEEEEEEec-------CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC
Confidence 666665543 233333333445567777777777766 688999999999988776665543322
Q ss_pred CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc-------------CCCCCCCeEEe-CCceEEeeCC
Q psy670 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA-------------EPEGDPPTFIE-KPKIRSEQGG 326 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~-------------~~~~~~p~~~~-~~~~~~~~~g 326 (540)
. ...|.|.+++.+|+|.|+|.+.|..|.....+.+.+.... .....+|.+.. .+....+.+|
T Consensus 162 ~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 237 (317)
T 2y25_A 162 E----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237 (317)
T ss_dssp S----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred C----EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence 1 3479999999999999999999988877777666543200 00111344443 3556788999
Q ss_pred CeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 327 ~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+.+.|.|.+.|.|.+.+.|+++|..+....++.+.... +. .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 238 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA-GR--TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314 (317)
T ss_dssp SBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBT-TT--EEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcC-CC--EEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 99999999999999999999999998777665443221 22 3489999999999999999999999999999999887
Q ss_pred E
Q psy670 407 M 407 (540)
Q Consensus 407 ~ 407 (540)
.
T Consensus 315 ~ 315 (317)
T 2y25_A 315 I 315 (317)
T ss_dssp C
T ss_pred c
Confidence 5
No 49
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=255.99 Aligned_cols=268 Identities=24% Similarity=0.416 Sum_probs=201.6
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
....+.+|+.+.|.|.+.+.|. .+.|++ +|..+....+..+.... ....|.|.+++.+|+|.|+|.+.+..|.
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~~~n~~g~ 85 (291)
T 2wim_A 12 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQATDAKGQ 85 (291)
T ss_dssp SEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEEEEECSSSC
T ss_pred cceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC-----CEEEEEEccCCcccCEEEEEEEecccCc
Confidence 3457889999999999988775 899999 67777666666554321 2348999999999999999999998876
Q ss_pred e-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670 189 S-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 189 ~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (540)
. ...+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............
T Consensus 86 ~~~~~~~l~v~~-------~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----- 153 (291)
T 2wim_A 86 TQEATVVLEIYQ-------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN----- 153 (291)
T ss_dssp EEEEEEEEEEEC-------CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTS-----
T ss_pred eEEEEEEEEecC-------CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCC-----
Confidence 5 5567777764 55555556667788999999999999999999999999988765332222222211
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCCee--eeEEEEEeeccCCCCCCCeEEeCCc--eEEeeCCCeEEEEEEEEccCCCeE
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGESN--ANLNLNIEAEAEPEGDPPTFIEKPK--IRSEQGGKLVVMECKVKAKPMPEI 343 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~i 343 (540)
.|.|.+++.+|+|.|+|.+.+..+... ..+.+.+.. +|.+...+. ...+.+|+.+.|.|.+.|.|.+.+
T Consensus 154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v 226 (291)
T 2wim_A 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 226 (291)
T ss_dssp CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB-------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc-------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence 599999999999999999999875543 334445544 333332222 335678999999999999999999
Q ss_pred EEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEE
Q psy670 344 VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408 (540)
Q Consensus 344 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 408 (540)
.|+++|..+....++.. ...+. .|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus 227 ~W~~~g~~~~~~~~~~~--~~~~~----~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 227 SWFRNGKLIEENEKYIL--KGSNT----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp EEEETTEECCCTTTEEE--CSTTC----EEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred EEEECCEECcCCccEEE--cCCcc----EEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 99999999987665443 12222 7999999999999999999999999999999998763
No 50
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.1e-31 Score=249.57 Aligned_cols=280 Identities=17% Similarity=0.279 Sum_probs=203.5
Q ss_pred CCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 110 KPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
....+.+|+.+.|.|... +.|.+.+.|+|++..+....++.+.... ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~~~n~~g~ 83 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKG-----NKTKMTFKDLGMDDLGIYSCDVTDTDGI 83 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEET-----TEEEEEESSCCGGGCEEEEEEESSSCCC
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeC-----CEEEEEECcCCccCCEEEEEEEEeCCCc
Confidence 345678999999999984 5788999999999999877777665421 1238999999999999999999998875
Q ss_pred eEEEEEEEEecCcCCCC-----CCCeeccCC-ceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecC
Q psy670 189 SNANIALNFQGGENGAG-----FAPSFIEKP-RIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQ 261 (540)
Q Consensus 189 ~~~~~~l~v~~~~~~~~-----~~p~~~~~~-~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~ 261 (540)
.. .+.+.|........ .+|.+...+ ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.....
T Consensus 84 ~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~ 162 (312)
T 2y23_A 84 AS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN 162 (312)
T ss_dssp CE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT
T ss_pred EE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC
Confidence 44 45555542100000 022332222 267788999999999998 78999999999999998877666554432
Q ss_pred CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc--------------CCCCCCCeEEeCCceEEeeCCC
Q psy670 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA--------------EPEGDPPTFIEKPKIRSEQGGK 327 (540)
Q Consensus 262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~--------------~~~~~~p~~~~~~~~~~~~~g~ 327 (540)
... ..|.|.+++.+|+|.|+|.+.+.... ....+.+.... .....+|.+.... ...+.+|+
T Consensus 163 ~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~ 237 (312)
T 2y23_A 163 TGI--IEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGEC 237 (312)
T ss_dssp TTE--EEEEESCCCGGGCEEEEEEEESSSCE--EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTT
T ss_pred CCE--EEEEEccCCcccCEeEEEEEEeCCce--EEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCC
Confidence 332 57999999999999999999864333 33333331000 0000135554332 36788999
Q ss_pred eEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 328 LVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 328 ~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.+.|.|.+.+.|.+ .+.|+++|..+....++... ++ ...|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 238 ~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~---~~---~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 238 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK---DG---ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEEEEESCCSSCEEEEEETTEEEEEECCC-------C---EEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE---CC---EEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 99999999999988 99999999998765554432 11 2389999999999999999999999999998888764
No 51
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=9.1e-35 Score=288.35 Aligned_cols=369 Identities=11% Similarity=0.143 Sum_probs=221.4
Q ss_pred ccceeeeCcceeEEeecceeeeeecC--eecc-----------------cCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK-----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD 67 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 67 (540)
.+.|.+.|.+. +.+.+.|||++ ..+. ...|+.+.....+ ...+|.|.+++.+|
T Consensus 18 ~L~C~~~~~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D 89 (434)
T 1igy_B 18 KMSCKASGYTF----TTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSS----NTANIHLSSLTSDD 89 (434)
T ss_dssp EECCEECSSCG----GGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGG----CBBCEEECSBCGGG
T ss_pred EEEEEccCCcc----cCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCC----CEEEEEECCCChHH
Confidence 46799988741 12789999974 2210 1234443222111 12589999999999
Q ss_pred CeeEEEEEEccCcceeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-ceEEEeCCEeec
Q psy670 68 SGEYKVIAKNKNGEGSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIE 144 (540)
Q Consensus 68 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~ 144 (540)
+|.|+|.+.+..+.....+.|.|.... ..+.+.. ......+.+|+.++|.|.+.|. |.+ .+.|++++..+.
T Consensus 90 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~------~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 90 SAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYP------LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp CSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEE------ECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred CEEEEEEEEccccccCCceEEEEccCCCCCCeEEE------cCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 999999999865444455667765321 1111110 0111234789999999999886 776 999999987531
Q ss_pred CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcC------CCCCCCee-ccCCcee
Q psy670 145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN------GAGFAPSF-IEKPRII 217 (540)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~------~~~~~p~~-~~~~~~~ 217 (540)
........ . .+.....+.|.|.++..+| |.|+|.+.|..+.......+.+..... .... |.+ ...+...
T Consensus 164 ~~~~~~~~-~-~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~-p~v~~~~p~~~ 239 (434)
T 1igy_B 164 VHTFPAVL-Q-SDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEV-SSVFIFPPKPK 239 (434)
T ss_dssp EEECCCEE-C-SSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSS-CCEEEECCCHH
T ss_pred eEecCcee-c-CCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcC-cEEEEeCCChH
Confidence 10000000 0 0222233579999999989 999999999988754444443321000 0001 333 2223222
Q ss_pred e-cCCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 218 P-NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 218 ~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
. +.+|+.+.|.|.+.+.+ .+.|.|++++..+......... .........+.|.|.++..+|+|.|+|.|.|..+
T Consensus 240 ~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 319 (434)
T 1igy_B 240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF 319 (434)
T ss_dssp HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence 2 78899999999999873 4589999999776533211110 0111112234688999999999999999999877
Q ss_pred CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-e
Q psy670 292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-K 368 (540)
Q Consensus 292 ~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~ 368 (540)
.......+.+... ...+|.+...+.......|+.+.|.|.+.|. |+ +.|.|+++|..+............++. .
T Consensus 320 ~~~~~~~v~~~~~---~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~ 396 (434)
T 1igy_B 320 PAPIEKTISKTKG---KPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYF 396 (434)
T ss_dssp SSCCCCCCCCCCS---CCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEE
T ss_pred CCceeEEEeccCC---CCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEE
Confidence 6433222221000 0114444333322223357789999999985 43 389999999987432111110112222 2
Q ss_pred eEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
..+.|.|.....+|+|.|+|.|.|....
T Consensus 397 ~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 397 VYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp EEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred EEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 2346888877778899999999998643
No 52
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=100.00 E-value=5.6e-31 Score=250.94 Aligned_cols=268 Identities=16% Similarity=0.160 Sum_probs=196.0
Q ss_pred CccccCCCeEEEEEEEeec---------CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEE
Q psy670 111 PTIHQDGDLLVMECVLEAS---------PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRC 180 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~---------p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C 180 (540)
...+.+|+++.|.|.+.+. |.+.+.|+|++..+....+. .. ...|.|.+++.+|+| .|+|
T Consensus 38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~---------~~~L~i~~v~~~D~Gs~Y~C 107 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VK---------NGDLWIANYTSNDSHRRYLC 107 (329)
T ss_dssp EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EE---------TTEEEESSCCGGGGGCCEEE
T ss_pred eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-ee---------cceEEEcCCChHhCCCcEEE
Confidence 3457899999999999774 55789999998876543332 11 118999999999999 9999
Q ss_pred EEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEeCCEEeeccCceEEEEe
Q psy670 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVN 259 (540)
Q Consensus 181 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~~~~~~~~~~~ 259 (540)
.+.+..|.......+.+... +|.+........+.+|+.+.|.|.+.+.| .+.+.|++++..+..........
T Consensus 108 ~a~n~~g~~~~~~~~~v~~~------~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~- 180 (329)
T 3oq3_B 108 TVTTKNGDCVQGIVRSHIRK------PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS- 180 (329)
T ss_dssp EEECTTSCEEEEEEEEEECC------CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-
T ss_pred EEEeCCCceeeEEEEEEEcC------CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-
Confidence 99998876544443333321 33333333344567899999999999999 89999999999885333222211
Q ss_pred cCCCeEEEEEEEeCCCCCCcEEEEEEEEcC--CCCeeee----EEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEE
Q psy670 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNE--FGESNAN----LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMEC 333 (540)
Q Consensus 260 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~----~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C 333 (540)
. ..|.|.+++.+|+|.|+|.+.|. .|..... +.|.|...+. . ...++ .+....+.+|+.+.|.|
T Consensus 181 ~------~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~--~-~~~~~-~~~~~~v~~G~~~~l~C 250 (329)
T 3oq3_B 181 G------QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQD--H-RFKLI-LDPKINVTIGEPANITC 250 (329)
T ss_dssp T------TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCC--C-CEEEE-CCSEEEECTTSCEEEEE
T ss_pred C------CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCC--C-CCcee-cCCeeEEecCCCEEEEE
Confidence 1 27999999999999999999987 5544333 5555554211 1 11333 56667889999999999
Q ss_pred EEEccC---CC-eEEEEECCEEc-cCCCceEEEEEecCCeeEEEEEEcCCCCCCCe-eEEEEEEcCCeeeEEEEEEEE
Q psy670 334 KVKAKP---MP-EIVWFHEGKEL-QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 334 ~~~~~p---~~-~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~V 405 (540)
.+.+.| .+ .+.|+++|..+ .............+......|.|.+++.+|+| .|+|.|.|..|....++.|.|
T Consensus 251 ~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 251 TAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 999988 77 89999999884 33433333322333345568999999999999 999999999999988888876
No 53
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.98 E-value=4.3e-31 Score=250.03 Aligned_cols=274 Identities=18% Similarity=0.274 Sum_probs=195.6
Q ss_pred CccccCCCeEEEEEEEeecCCC-----ceEEEeCCEee-------------cCCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMP-----DIIWYQGTKVI-------------EDTGRIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~-----~v~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
.+.+..|++++|.|.+.+.+.+ .+.|+|++... ....+..+............+|.|.+++.
T Consensus 9 ~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~ 88 (313)
T 4fqp_A 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV 88 (313)
T ss_dssp EECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCG
T ss_pred EEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCCh
Confidence 3456789999999999876655 48999987532 22223332222112222234799999999
Q ss_pred CCCeEEEEEEEc-CCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeec
Q psy670 173 DDGGNYRCNACN-SIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKE 250 (540)
Q Consensus 173 ~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~ 250 (540)
+|+|.|+|.+.+ ..+.....+.|.+.. .|.+...+....+..|+.+.+.|.+. +.|.+.+.|++++..+..
T Consensus 89 ~D~G~Y~C~v~~~~~~~~~~~~~l~v~~-------~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~ 161 (313)
T 4fqp_A 89 EDEGNYTCLFVTFPQGSRSVDIWLRVLA-------KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN 161 (313)
T ss_dssp GGCEEEEEEEECSSSCEEEEEEEECCBB-------CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred hhCEEEEEEEeeccCcceeeeeeeeecc-------CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence 999999998864 445566677776664 55555545555667788999999875 689999999999887754
Q ss_pred cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE--EEEEeeccCCCCCCCeEE-eCCceEEeeCCC
Q psy670 251 SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL--NLNIEAEAEPEGDPPTFI-EKPKIRSEQGGK 327 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~--~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~ 327 (540)
...... .........+.|.|.....+|+|.|+|.|.|..+...... .|.|.. +|.+. .......+.+|+
T Consensus 162 ~~~~~~-~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~v~~~~~~~~~~~~g~ 233 (313)
T 4fqp_A 162 TSQVPG-FLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-------PPEVSISGYDNNWYLGQN 233 (313)
T ss_dssp EEEEEC-SSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-------EEEEEEECCCSCEETTCC
T ss_pred cceeee-ecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-------CCccccccccceeecCCC
Confidence 322111 1111222345789999999999999999999876654444 444433 45543 333445566789
Q ss_pred eEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 328 LVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 328 ~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.++|.|.+.|+|.| .|.|+++|..+..... ..+. +|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 234 ~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~------~~~~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 303 (313)
T 4fqp_A 234 EATLTCDARSNPEPTGYNWSTTMGPLPPFAV------AQGA----QLLIRPVDKPINTTLICNVTNALGARQAELTVQVK 303 (313)
T ss_dssp CEEEEEEEEEESCCCEEEEEETTBSCCTTEE------EETT----EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred eEEEEEEecCCCCCcEEEEEECCEECCCceE------EeCC----EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 99999999999998 6999999988765321 1222 79999999999999999999999999999999998
Q ss_pred EEE
Q psy670 407 MVR 409 (540)
Q Consensus 407 ~~~ 409 (540)
..|
T Consensus 304 ~~P 306 (313)
T 4fqp_A 304 EGP 306 (313)
T ss_dssp CCC
T ss_pred eCC
Confidence 744
No 54
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.98 E-value=1.9e-34 Score=286.12 Aligned_cols=362 Identities=12% Similarity=0.205 Sum_probs=222.5
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee----c-------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI----E-------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~----~-------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ . ...++.+..+. ....++|.|.+
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~ 84 (434)
T 1igy_B 8 AELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDR---SSNTANIHLSS 84 (434)
T ss_dssp CCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCG---GGCBBCEEECS
T ss_pred CeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEEC---CCCEEEEEECC
Confidence 45788999999999997764 6789999853 221 0 01233322211 11223799999
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEE
Q psy670 170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKL 247 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~ 247 (540)
++.+|+|.|+|.+.+..+.....+.|.|..... .+|.+...+....+.+|+.+.|.|.+.+. |.+ .|.|++++..
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~ 161 (434)
T 1igy_B 85 LTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKT---TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 161 (434)
T ss_dssp BCGGGCSEECCCCSSSSCCCCCCEECEECCSCC---BCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBC
T ss_pred CChHHCEEEEEEEEccccccCCceEEEEccCCC---CCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcC
Confidence 999999999999988644434445666653211 13444322222345789999999999885 776 9999999875
Q ss_pred eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec-------cCCCCCCCeEEeCCce
Q psy670 248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE-------AEPEGDPPTFIEKPKI 320 (540)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~-------~~~~~~~p~~~~~~~~ 320 (540)
+........ .........+.|.|.++..+| |.|+|.|.|..+.......+.+... +.+ ..+..++..+..
T Consensus 162 ~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~-~~p~v~~~~p~~ 238 (434)
T 1igy_B 162 SGVHTFPAV-LQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVP-EVSSVFIFPPKP 238 (434)
T ss_dssp SSEEECCCE-ECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCS-SSCCEEEECCCH
T ss_pred CCeEecCce-ecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCC-cCcEEEEeCCCh
Confidence 321100000 111112223579999999888 9999999999887544444432210 000 012223333332
Q ss_pred EE-eeCCCeEEEEEEEEccC----CCeEEEEECCEEccCCCceEEEEEecC-CeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 321 RS-EQGGKLVVMECKVKAKP----MPEIVWFHEGKELQQTDRISWNVTLKG-DKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 321 ~~-~~~g~~v~l~C~~~~~p----~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
.. +.+|+.+.|.|.+.|.+ .+.|.|++++..+............++ ....+.|.|..+..+|+|.|+|.|.|..
T Consensus 239 ~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 318 (434)
T 1igy_B 239 KDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAA 318 (434)
T ss_dssp HHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSS
T ss_pred HHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCC
Confidence 22 77899999999999874 358999999977653321111000111 1112368999999999999999999988
Q ss_pred eeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEE
Q psy670 395 GELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVI 474 (540)
Q Consensus 395 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l 474 (540)
|.......+.+.. ....+|.+...+......+|+.++|
T Consensus 319 ~~~~~~~~v~~~~------------------------------------------~~~~~P~v~~~~~~~~~~~~~~~~L 356 (434)
T 1igy_B 319 FPAPIEKTISKTK------------------------------------------GKPRAPQVYTIPPPKEQMAKDKVSL 356 (434)
T ss_dssp CSSCCCCCCCCCC------------------------------------------SCCBCCCCEEECCCSSSSSSSEEEE
T ss_pred CCCceeEEEeccC------------------------------------------CCCcCCEEEEECCCHHHhcCCcEEE
Confidence 8643222221100 0112565543332222346788999
Q ss_pred EEEEeeecCC--ceEEEecCeecCCC----------CeE----EEEEEec---CCeEEEEEEeeeeee
Q psy670 475 ECKVMSMYEP--SVTWMKEKNTVKED----------NKH----VVHIEQV---KDVSMNFELWLGIVE 523 (540)
Q Consensus 475 ~C~v~g~p~~--~v~W~~~~~~l~~~----------~~~----~~~~~~~---~~g~y~c~~~~~~~~ 523 (540)
.|.+.|.+++ +|+|+|+|..+... ..+ .+.+... +.|.|+|.+....+.
T Consensus 357 ~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 357 TCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp EEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred EEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 9999996443 89999999887432 111 1233333 479999999876654
No 55
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.98 E-value=1.5e-30 Score=243.77 Aligned_cols=254 Identities=24% Similarity=0.413 Sum_probs=189.5
Q ss_pred cceeeeCcceeEEeecceeeeee-cCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce-eee
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYH-KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SST 85 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~ 85 (540)
+.|.+.|.| +.+.|+| +|..+..+.++.+..... .++|.|.+++.+|+|.|+|.+.|..|.. ...
T Consensus 24 l~C~~~~~p-------~~v~W~~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~ 90 (291)
T 2wim_A 24 FTCTAIGEP-------ESIDWYNPQGEKIISTQRVVVQKEGV------RSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 90 (291)
T ss_dssp EEEEEESCC-------SEEECBCTTCCBCCCBTTEEEEEETT------EEEEEECSCCGGGCEEEEEEEECSSSCEEEEE
T ss_pred EEEEEeCCC-------CceEEECCCCcCccCCCcEEEecCCC------EEEEEEccCCcccCEEEEEEEecccCceEEEE
Confidence 569998876 4799999 788887777776654432 3689999999999999999999988765 346
Q ss_pred EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC--CceEEEEeecCcceEEE
Q psy670 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLL 163 (540)
Q Consensus 86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 163 (540)
+.|.|...+ .+. ....+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+..... +.
T Consensus 91 ~~l~v~~~~-~~~--------~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~--- 153 (291)
T 2wim_A 91 VVLEIYQKL-TFR--------EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-----NN--- 153 (291)
T ss_dssp EEEEEECCC-BCC--------SCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT-----TS---
T ss_pred EEEEecCCc-ceE--------eCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc-----CC---
Confidence 666665443 111 1123456889999999999999999999999999877542 2322211 11
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCc--eeecCCCCeEEEEEEecccCCCeE
Q psy670 164 RLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPR--IIPNESGTLIQMKCKCSAKPRPEV 239 (540)
Q Consensus 164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v 239 (540)
.|.|.+++.+|+|.|+|.+.+..+.. ...+.+.+.. +|.+...+. ...+.+|+.+.|.|.+.+.|.+.+
T Consensus 154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v 226 (291)
T 2wim_A 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 226 (291)
T ss_dssp CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB-------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc-------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence 69999999999999999999876443 4556666664 444443333 456788999999999999999999
Q ss_pred EEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670 240 KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304 (540)
Q Consensus 240 ~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~ 304 (540)
.|++++..+......... ... ..|.|.++..+|+|.|+|.|.|..|.....+.+.|...
T Consensus 227 ~W~~~g~~~~~~~~~~~~--~~~----~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 227 SWFRNGKLIEENEKYILK--GSN----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp EEEETTEECCCTTTEEEC--STT----CEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred EEEECCEECcCCccEEEc--CCc----cEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 999999998776654432 111 27999999999999999999999999998888888763
No 56
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.98 E-value=5.2e-30 Score=240.03 Aligned_cols=257 Identities=18% Similarity=0.346 Sum_probs=192.3
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEe-CCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFK-ADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~-~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 283 (540)
++.+...|....+.+|+.+.|.|.+.+.| .+.+.|++ +|..+... .+..+..... ....|.|.+++.+|+|.|+
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~ 78 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD---DSSTLTIYNANIDDAGIYK 78 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEET---TEEEEEECSCCGGGCEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCC---CeEEEEEecCCCCCCEEEE
Confidence 34555566777788999999999999876 68999999 77766543 2333322211 1248999999999999999
Q ss_pred EEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670 284 CNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362 (540)
Q Consensus 284 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 362 (540)
|.+.+..|. ....+.+.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........
T Consensus 79 C~~~n~~g~~~~~~~~l~v~~-------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 151 (291)
T 1qz1_A 79 CVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV 151 (291)
T ss_dssp EEEECTTSCEEEEEEEEEEEC-------CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEE
T ss_pred EEEEcCCCCeeEEEEEEEeec-------cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEE
Confidence 999998764 34555566554 6677777777889999999999999999999999999998876543333222
Q ss_pred EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccC
Q psy670 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVN 440 (540)
Q Consensus 363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (540)
..++ .|.|.++..+|+|.|+|.|.|..+.. ...+.|.|..
T Consensus 152 ~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~--------------------------------- 193 (291)
T 1qz1_A 152 LSNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV--------------------------------- 193 (291)
T ss_dssp CTTS-----CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE---------------------------------
T ss_pred ccCC-----cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec---------------------------------
Confidence 2222 69999999999999999999976433 4455666655
Q ss_pred cccccceeeeeeeeceeecC--CcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC----e-------EEE---E
Q psy670 441 PQFKKYSVLTLSVVPVIREV--PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN----K-------HVV---H 504 (540)
Q Consensus 441 ~~~~~~~~~~~~~~p~i~~~--~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~----~-------~~~---~ 504 (540)
+|.+... +....+.+|+.++|.|.+.|.|.|.++|+++|..+.... + ..+ .
T Consensus 194 -------------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~ 260 (291)
T 1qz1_A 194 -------------PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRN 260 (291)
T ss_dssp -------------EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECS
T ss_pred -------------CCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEe
Confidence 5555543 335678899999999999999999999999999887653 1 123 3
Q ss_pred EEecCCeEEEEEEeeeeeee
Q psy670 505 IEQVKDVSMNFELWLGIVEK 524 (540)
Q Consensus 505 ~~~~~~g~y~c~~~~~~~~~ 524 (540)
+...|.|.|+|.+.......
T Consensus 261 v~~~d~G~Y~C~a~N~~G~~ 280 (291)
T 1qz1_A 261 VDKNDEAEYVCIAENKAGEQ 280 (291)
T ss_dssp CCGGGCEEEEEEEEETTEEE
T ss_pred cChhcCEEEEEEEEeCCCce
Confidence 44478999999998765443
No 57
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.97 E-value=5.8e-31 Score=249.51 Aligned_cols=274 Identities=16% Similarity=0.218 Sum_probs=199.3
Q ss_pred CccccCCCeEEEEEEEeecC-CCceEEEeCCEeec----CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP-MPDIIWYQGTKVIE----DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
...+.+|+.+.|.|.+.+.| .+.+.|+|++..+. ...+..... ..|.|.+++.+|+|.|+|.+.|.
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~---------~~L~i~~v~~~D~G~Y~C~a~n~ 84 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK---------EKLWFVPAKVEDSGHYYCVVRNS 84 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECS---------SBEECTTCCGGGCSCCEECCCSS
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccC---------CeEEECCCChhhCEEEEEEEeCC
Confidence 45688999999999998877 77999999986432 122322211 17999999999999999999998
Q ss_pred CceeEEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEe------cccCCCeEEEEeCCEEeeccCceEE
Q psy670 186 IGESNANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKC------SAKPRPEVKWFKADKLVKESSKIKI 256 (540)
Q Consensus 186 ~~~~~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~------~~~p~~~v~W~~~~~~l~~~~~~~~ 256 (540)
.+.....+.+.+... +|.+... .....+..|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus 85 ~g~~~~~~~v~v~~~------~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~ 158 (315)
T 1itb_B 85 SYCLRIKISAKFVEN------EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS 158 (315)
T ss_dssp SCCCCEECCCEEECC------CTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEE
T ss_pred ceEEEEEEEEEEeCC------CCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEe
Confidence 877666666655432 2332211 123457789999999998 7889999999999999865433222
Q ss_pred EEecCCCeEEEEEEEeCCCCCCcEEEEEEEE-cCCCCeee-eEEEEEeeccCCCCCCCeEEeCCce-EEeeCCCeEEEEE
Q psy670 257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVK-NEFGESNA-NLNLNIEAEAEPEGDPPTFIEKPKI-RSEQGGKLVVMEC 333 (540)
Q Consensus 257 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~-~~~~~g~~v~l~C 333 (540)
... ..|.|.+++.+|+|.|+|.+. +..|.... ...+.+.........+|.+...+.. ..+.+|+.+.|.|
T Consensus 159 -~~~------~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C 231 (315)
T 1itb_B 159 -GVK------DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC 231 (315)
T ss_dssp -EET------TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEE
T ss_pred -ecC------ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEE
Confidence 111 179999999999999999999 67776522 2233332222222236666655543 4688999999999
Q ss_pred EEEccCCCeEEEEECCEEccCCCceEEE----EEecC----CeeEEEEEEcCCCCCC-CeeEEEEEEcCCeeeEEEEEEE
Q psy670 334 KVKAKPMPEIVWFHEGKELQQTDRISWN----VTLKG----DKYHIRLEVKDPRKED-TGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 334 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~----~~~~~----~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
.+.|.|.|.+.|+++|..+......... ..... ......|.|.+++.+| +|.|+|.|.|..|....++.|.
T Consensus 232 ~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~ 311 (315)
T 1itb_B 232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311 (315)
T ss_dssp EEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEE
T ss_pred EEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEE
Confidence 9999999999999999999876542221 11100 0234589999999999 9999999999999999999888
Q ss_pred EE
Q psy670 405 IE 406 (540)
Q Consensus 405 V~ 406 (540)
|.
T Consensus 312 v~ 313 (315)
T 1itb_B 312 YP 313 (315)
T ss_dssp CC
T ss_pred ec
Confidence 75
No 58
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.97 E-value=3.7e-29 Score=252.29 Aligned_cols=361 Identities=14% Similarity=0.207 Sum_probs=215.6
Q ss_pred CccccCCCeEEEEEEEeecCC----CceEEEeC--CEee---c---C----------CCceEEEEeecCcceEEEEEEEc
Q psy670 111 PTIHQDGDLLVMECVLEASPM----PDIIWYQG--TKVI---E---D----------TGRIKMSKKSIGKDTYLLRLEIN 168 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~--~~~~---~---~----------~~~~~~~~~~~~~~~~~~~L~i~ 168 (540)
...+.+|++++|.|.+.+.+. ..+.|||. |..+ . . ..++.+..+ .....++|.|.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~ 85 (512)
T 1zvo_C 9 PGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVD---TSRNQFSLNLR 85 (512)
T ss_pred CEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEec---CCCCEEEEEEC
Confidence 457889999999999976543 67999985 2211 0 0 123333221 11224589999
Q ss_pred CCCCCCCeEEEEEEEcCCc-----------e--eEEEEEEEEecCcCCCCCCCeec-cCCcee-ecCCCCeEEEEEEecc
Q psy670 169 NPTKDDGGNYRCNACNSIG-----------E--SNANIALNFQGGENGAGFAPSFI-EKPRII-PNESGTLIQMKCKCSA 233 (540)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~-~~~~g~~~~l~C~~~~ 233 (540)
+++.+|+|.|.|.+.+..+ . ....+.|.|..... .+|.+. ..+... .+ .|+.+.|.|.+.+
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~i~~~~~~~~~~~-~~~~v~L~C~~~g 161 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT---KAPDVFPIISGCRHPK-DNSPVVLACLITG 161 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC---cCCeEEeccCCccccc-CCCeEEEEEEEEe
Confidence 9999999999999987642 1 12345666663211 134433 122111 22 4689999999988
Q ss_pred c-CCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE-----------EEE
Q psy670 234 K-PRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL-----------NLN 300 (540)
Q Consensus 234 ~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~-----------~l~ 300 (540)
. |.+ .|.|++++.....................+.|.|.....+ .|.|+|.|.|..+...... .+.
T Consensus 162 ~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~ 240 (512)
T 1zvo_C 162 YHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSV 240 (512)
T ss_pred eecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEE
Confidence 5 765 8999996543210000001111122233457888887777 8999999999887654433 222
Q ss_pred EeeccC---------------------------------------------CCCCCCeE-EeCCceEEeeCCCeEEEEEE
Q psy670 301 IEAEAE---------------------------------------------PEGDPPTF-IEKPKIRSEQGGKLVVMECK 334 (540)
Q Consensus 301 v~~~~~---------------------------------------------~~~~~p~~-~~~~~~~~~~~g~~v~l~C~ 334 (540)
+...+. ....+|.+ +..+....+.+|+.++|+|.
T Consensus 241 l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~ 320 (512)
T 1zvo_C 241 PTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCF 320 (512)
T ss_pred EeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEE
Confidence 321110 00123443 33334344667999999999
Q ss_pred EEccCC--CeEEEEECCEEccCCCceE-EEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEE
Q psy670 335 VKAKPM--PEIVWFHEGKELQQTDRIS-WNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRF 410 (540)
Q Consensus 335 ~~~~p~--~~i~W~~~~~~~~~~~~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 410 (540)
+.+.++ ..|+|+++|..+....... .....++. ...+.|.|.....+|.|.|+|.|.|..+... ...+....-
T Consensus 321 v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~-- 397 (512)
T 1zvo_C 321 VVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPA-- 397 (512)
T ss_pred EeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecC--
Confidence 998643 3899999999865221101 11111221 2345799999999999999999999876543 222221110
Q ss_pred EEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEE-EEEEEeeecCC--ceE
Q psy670 411 IKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVV-IECKVMSMYEP--SVT 487 (540)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~-l~C~v~g~p~~--~v~ 487 (540)
. ....+|.+...+... .|+.+. |.|.+.|++++ .++
T Consensus 398 ----------------------------~----------~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~ 436 (512)
T 1zvo_C 398 ----------------------------A----------QAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLM 436 (512)
T ss_pred ----------------------------C----------CCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEE
Confidence 0 001145443322221 789999 99999996554 689
Q ss_pred EEecCeecCCCCe-------------E----EEEEEecC---CeEEEEEEeeeeee
Q psy670 488 WMKEKNTVKEDNK-------------H----VVHIEQVK---DVSMNFELWLGIVE 523 (540)
Q Consensus 488 W~~~~~~l~~~~~-------------~----~~~~~~~~---~g~y~c~~~~~~~~ 523 (540)
|+|||..+..+.. + .+.+...+ .|.|+|.+....+.
T Consensus 437 W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~ 492 (512)
T 1zvo_C 437 WLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSR 492 (512)
T ss_pred EEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCC
Confidence 9999998754311 1 22344444 88999998865544
No 59
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.97 E-value=2.7e-32 Score=260.99 Aligned_cols=282 Identities=20% Similarity=0.377 Sum_probs=140.5
Q ss_pred CCccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 110 KPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
....+.+|+.+.|.|.+.+. |.+.+.|+|+|..+....++... ...|.|.+++.+|+|.|+|.+.+. +.
T Consensus 16 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~-~~ 85 (334)
T 1ry7_B 16 EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG---------PQRLQVLNASHEDSGAYSCRQRLT-QR 85 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec---------cceEEEeecccccCEEEEEEEEeC-Ce
Confidence 34568899999999999776 67899999999988665554332 138999999999999999999998 76
Q ss_pred eEEEEEEEEecCcCCCC---------------CCCeeccC----CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEee
Q psy670 189 SNANIALNFQGGENGAG---------------FAPSFIEK----PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVK 249 (540)
Q Consensus 189 ~~~~~~l~v~~~~~~~~---------------~~p~~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~ 249 (540)
....+.|.|...+.... .+|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus 86 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~ 165 (334)
T 1ry7_B 86 VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR 165 (334)
T ss_dssp ---------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCC
T ss_pred EEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECc
Confidence 67777777765321100 12333221 223567789999999999999999999999998876
Q ss_pred ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCe
Q psy670 250 ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKL 328 (540)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~ 328 (540)
............. ...|.|.+++.+|+|.|+|.+.|..|.....+.+.|...+. .+|.+.. .+....+.+|+.
T Consensus 166 ~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~G~~ 239 (334)
T 1ry7_B 166 GEHRIGGIKLRHQ---QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP---HRPILQAGLPANQTAVLGSD 239 (334)
T ss_dssp TTSSTTCCCCCTT---TTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC---SSCBCCTTCSCCEEEESSCC
T ss_pred ccccccceecccc---eEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC---CCCceEecCCCceEEeCCCC
Confidence 5433211000011 12799999999999999999999988887777888765321 1233322 245667889999
Q ss_pred EEEEEEEEccCCCeEEEEE----CCEEccCCCceEEEEEecC-----CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 329 VVMECKVKAKPMPEIVWFH----EGKELQQTDRISWNVTLKG-----DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 329 v~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
+.|.|.+.+.|.+.+.|++ +|..+.............+ ......|.|.+++.+|+|.|+|.|.|..|....
T Consensus 240 v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 319 (334)
T 1ry7_B 240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH 319 (334)
T ss_dssp EEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEE
T ss_pred EEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEE
Confidence 9999999999999999999 6766654332111111111 001126999999999999999999999999999
Q ss_pred EEEEEEEE
Q psy670 400 NLTLNIEM 407 (540)
Q Consensus 400 ~~~l~V~~ 407 (540)
++.|.|..
T Consensus 320 ~~~l~V~~ 327 (334)
T 1ry7_B 320 SAWLVVLP 327 (334)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 99999987
No 60
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=244.96 Aligned_cols=266 Identities=17% Similarity=0.185 Sum_probs=187.5
Q ss_pred eCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEee
Q psy670 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92 (540)
Q Consensus 13 ~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~ 92 (540)
.|.|. +.+.|+|+|.++..+.++.+..... ..+|.|.+++.+|+|.|+|.+.|..|... +..+.|..
T Consensus 27 ~~~p~------~~v~W~k~~~~i~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~ 93 (312)
T 2y23_A 27 KMTPK------SEFSWSKDYVSTEDSPRLEVESKGN------KTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEE 93 (312)
T ss_dssp SCCTT------CCEEEEETTEECTTCTTEEEEEETT------EEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHH
T ss_pred CCCCC------cEEEEEECCEECCCCCCEEEEEeCC------EEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEee
Confidence 46777 9999999999999888888776433 36999999999999999999999887544 55555532
Q ss_pred cCCccccC-CCCCCCCC---CCCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEE
Q psy670 93 EDGKLKVP-GGKAPRFP---KKPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI 167 (540)
Q Consensus 93 ~~~~~~i~-~~~~~~~~---~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 167 (540)
......+. ....|.+. .....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..... .....|.|
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~---~~~~~L~i 170 (312)
T 2y23_A 94 LKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN---TGIIEMFM 170 (312)
T ss_dssp HHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT---TTEEEEEE
T ss_pred eeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC---CCEEEEEE
Confidence 10000000 00001111 1245688999999999997 88999999999999998777666654321 12347999
Q ss_pred cCCCCCCCeEEEEEEEcCCceeEEEEEEEEec-------C-----cCCCCCCCeeccCCceeecCCCCeEEEEEEecccC
Q psy670 168 NNPTKDDGGNYRCNACNSIGESNANIALNFQG-------G-----ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235 (540)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~-------~-----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 235 (540)
.+++.+|+|.|+|.+.+........+.+.... . +.....+|.+.... ...+.+|+.+.|.|.+.+.|
T Consensus 171 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p 249 (312)
T 2y23_A 171 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIK 249 (312)
T ss_dssp SCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCC
T ss_pred ccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCC
Confidence 99999999999999987554443333331000 0 00000124443222 35677999999999999998
Q ss_pred CC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 236 RP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 236 ~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
.+ .+.|++++..+....+..+. .....|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus 250 ~~~~v~W~~~g~~~~~~~~~~~~------~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i 310 (312)
T 2y23_A 250 KETHIVWYKDEREISVDEKHDFK------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310 (312)
T ss_dssp SSCEEEEEETTEEEEEECCC----------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred CCCEEEEeeCCEECCCCCcEEEE------CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence 87 99999999998765544432 11348999999999999999999999999888777765
No 61
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=249.44 Aligned_cols=265 Identities=18% Similarity=0.300 Sum_probs=194.8
Q ss_pred cceeeeCc-ceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 8 KSYTLEGE-PTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 8 ~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
+.|.+.|. |. +.+.|+|+|..+..+.++++. .. ..+|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 26 l~C~~~~~~p~------~~v~W~~~~~~~~~~~~~~~~--~~------~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 91 (317)
T 2y25_A 26 LKCKVANIKKE------THIVWYKDEREISVDEKHDFK--DG------ICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 91 (317)
T ss_dssp EEEEEESCCTT------CEEEEEETTEEECCSCC-------C------CEEEEETTCCSTTCSCEEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCCC------CEEEEEECCeEcCCCCcEEEE--CC------eEEEEEccCCcccCeEEEEEEECCCCcEEEEE
Confidence 56888887 55 899999999999877776543 12 26899999999999999999999988776665
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEee----------cCCCceEEEeCCEeecCCCceEEEEeec
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA----------SPMPDIIWYQGTKVIEDTGRIKMSKKSI 156 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 156 (540)
.|.|...+..+. ......+.+|+.+.|.|.+.+ .|.+.+.|+++|..+....+......
T Consensus 92 ~l~v~~~~~~~~---------~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-- 160 (317)
T 2y25_A 92 KLVDEAFKELMM---------EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT-- 160 (317)
T ss_dssp CCSTHHHHHHHH---------HHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEEC--
T ss_pred EEEEecCccccc---------cCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEecc--
Confidence 555443220000 011234557777777777765 68899999999999877666555432
Q ss_pred CcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecC-------------cCCCCCCCeecc-CCceeecCCC
Q psy670 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG-------------ENGAGFAPSFIE-KPRIIPNESG 222 (540)
Q Consensus 157 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-------------~~~~~~~p~~~~-~~~~~~~~~g 222 (540)
.....|.|.+++.+|+|.|+|.+.|..+.....+.+.+... .......|.+.. .+....+.+|
T Consensus 161 ---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 237 (317)
T 2y25_A 161 ---GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237 (317)
T ss_dssp ---SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred ---CCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence 12347999999999999999999999888887777765420 000111333333 3556678899
Q ss_pred CeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 223 TLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 223 ~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
+.+.|.|.+.+.|.+.+.|++++..+....+..+.... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 238 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA---GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314 (317)
T ss_dssp SBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBT---TTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcC---CCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 99999999999999999999999998776665443221 123589999999999999999999999988888888876
Q ss_pred e
Q psy670 303 A 303 (540)
Q Consensus 303 ~ 303 (540)
.
T Consensus 315 ~ 315 (317)
T 2y25_A 315 I 315 (317)
T ss_dssp C
T ss_pred c
Confidence 4
No 62
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.97 E-value=1.5e-28 Score=247.96 Aligned_cols=381 Identities=12% Similarity=0.164 Sum_probs=221.9
Q ss_pred ccceeeeCcceeEEeecceeeeeec--Ceecc----------------cCCceEEEEecCccceeeEEEEEEcccccCCC
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHK--GSLLK----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS 68 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~--~~~l~----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 68 (540)
.+.|.+.|.+. ......+.|||. |..+. ...|+.+.....+ ...+|+|.+++.+|+
T Consensus 19 ~L~C~~~~~~~--~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~sL~I~~v~~~Ds 92 (512)
T 1zvo_C 19 SLTCIVSGGPI--RRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSR----NQFSLNLRSMSAADT 92 (512)
T ss_pred EEEEEEccccc--CCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCC----CEEEEEECcCCHHHC
Confidence 46788887653 000157999986 32110 1234444332111 247999999999999
Q ss_pred eeEEEEEEccCc----------c---eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-
Q psy670 69 GEYKVIAKNKNG----------E---GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP- 132 (540)
Q Consensus 69 G~Y~C~~~~~~~----------~---~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~- 132 (540)
|.|.|.+.+..+ . ....+.|.|...+ ..+.+.. . .........|+.+.|.|.+.+. |.+
T Consensus 93 g~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~----~-~~~~~~~~~~~~v~L~C~~~g~~P~p~ 167 (512)
T 1zvo_C 93 AMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFP----I-ISGCRHPKDNSPVVLACLITGYHPTSV 167 (512)
T ss_pred EEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEe----c-cCCcccccCCCeEEEEEEEEeeecCce
Confidence 999999987642 1 1234566665321 1111110 0 0001101246899999999876 765
Q ss_pred ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEE-----------EEEEecCc
Q psy670 133 DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI-----------ALNFQGGE 201 (540)
Q Consensus 133 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-----------~l~v~~~~ 201 (540)
.+.|++++...... .........+.....+.|.|.....+ .|.|+|.+.|..+.....+ .+.+...+
T Consensus 168 ~v~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp 245 (512)
T 1zvo_C 168 TVTWYMGTQSQPQR-TFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP 245 (512)
T ss_pred EEEEEcCcccCceE-ecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence 89999965431100 00000111122234457999988887 9999999999887654333 23332111
Q ss_pred C---------------------------------------------CCCCCCee-ccCCceeecCCCCeEEEEEEeccc-
Q psy670 202 N---------------------------------------------GAGFAPSF-IEKPRIIPNESGTLIQMKCKCSAK- 234 (540)
Q Consensus 202 ~---------------------------------------------~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~- 234 (540)
. ....+|.+ ...+....+.+|+.++|.|.+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~ 325 (512)
T 1zvo_C 246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSD 325 (512)
T ss_pred chhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceE
Confidence 0 01123333 223333445679999999999885
Q ss_pred CC-CeEEEEeCCEEeeccCceEEEEecCC--CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCC
Q psy670 235 PR-PEVKWFKADKLVKESSKIKIIVNEQD--DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311 (540)
Q Consensus 235 p~-~~v~W~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~ 311 (540)
|+ ..|+|+++|..+.............. ....+.|.|..+..+|.|.|+|.|.|..+... ...+...... ....+
T Consensus 326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~-~~~~~ 403 (512)
T 1zvo_C 326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAA-QAPVK 403 (512)
T ss_pred CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCC-CCCCC
Confidence 42 48999999988652211111111112 23345799999999999999999999876543 3233221100 00114
Q ss_pred CeEEeCCceEEeeCCCeEE-EEEEEEccCCC--eEEEEECCEEccCCCceEEE--EEecCC--eeEEEEEEcCCCCCCCe
Q psy670 312 PTFIEKPKIRSEQGGKLVV-MECKVKAKPMP--EIVWFHEGKELQQTDRISWN--VTLKGD--KYHIRLEVKDPRKEDTG 384 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~-l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~--~~~~~~--~~~~~L~i~~~~~~d~G 384 (540)
|.+...+... .|+.+. |.|.+.|++++ .|.|+++|..+......... ...++. ...+.|.|.....+|.|
T Consensus 404 p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g 480 (512)
T 1zvo_C 404 LSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPA 480 (512)
T ss_pred CEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCC
Confidence 4443332221 788899 99999986443 68999999998764322111 122232 22357888888888899
Q ss_pred eEEEEEEcCCeee--EEEEEEEE
Q psy670 385 LYKCNIKNFHGEL--NANLTLNI 405 (540)
Q Consensus 385 ~Y~C~a~n~~g~~--~~~~~l~V 405 (540)
.|+|.|.|..... .....+.|
T Consensus 481 ~YtC~v~h~~l~~~~~~~~~~~v 503 (512)
T 1zvo_C 481 TYTCVVSHEDSRTLLNASRSLEV 503 (512)
T ss_pred eEEEEEEecCCCCceEEEEEEEe
Confidence 9999999986543 33444444
No 63
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.97 E-value=3e-30 Score=248.36 Aligned_cols=279 Identities=17% Similarity=0.282 Sum_probs=169.6
Q ss_pred CCccccCCCeEEEEEEEeecCC-----------CceEEEeCCEe------ec-CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 110 KPTIHQDGDLLVMECVLEASPM-----------PDIIWYQGTKV------IE-DTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~-----------~~v~W~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
....+.+|+.+.|.|.+.+.|. +.+.|+|++.. +. .....++... . ..|.|.+++
T Consensus 15 ~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~----~---~~L~i~~~~ 87 (349)
T 4dep_C 15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE----K---DVLWFRPTL 87 (349)
T ss_dssp CCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE----T---TEEEESSCC
T ss_pred eeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec----C---CEEEEccCC
Confidence 3456889999999999987554 89999998732 11 0011111111 1 179999999
Q ss_pred CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-----cccCCCeEEEEeCCE
Q psy670 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-----SAKPRPEVKWFKADK 246 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~v~W~~~~~ 246 (540)
.+|+|.|+|.+.|..+.....+.|.|...+.. .+.....+....+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus 88 ~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~ 164 (349)
T 4dep_C 88 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSC---FNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY 164 (349)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEECCCTT---SCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred hhhCEEEEEEEecCCceEEEEEEEEEecCCcc---cCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence 99999999999999888888888888863321 1111223445677899999999985 678899999999999
Q ss_pred EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC-CCe---eeeEEEEEeeccCCCCCCCeEEeCCceE-
Q psy670 247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF-GES---NANLNLNIEAEAEPEGDPPTFIEKPKIR- 321 (540)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~- 321 (540)
.+....... ... ..|.|.+++.+|+|.|+|.+.|.. |.. ...+.+.|...+.. ..+|.+...+...
T Consensus 165 ~l~~~~~~~--~~~------~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~-~~~p~i~~~~~~~~ 235 (349)
T 4dep_C 165 KIQNFNNVI--PEG------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN-AVPPVIHSPNDHVV 235 (349)
T ss_dssp ECCSCSSEE--EET------TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG-CCSCEEC-------
T ss_pred ECCCcccee--ecC------CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC-CCCCeEecCCCcee
Confidence 886543322 111 269999999999999999999976 433 44555555442111 1134444433322
Q ss_pred -EeeCCCeEEEEEEEE----ccCCCeEEEEECCEEccC-CCceEEEE--E---ecCCeeEEEEEEcCCCCCCC-eeEEEE
Q psy670 322 -SEQGGKLVVMECKVK----AKPMPEIVWFHEGKELQQ-TDRISWNV--T---LKGDKYHIRLEVKDPRKEDT-GLYKCN 389 (540)
Q Consensus 322 -~~~~g~~v~l~C~~~----~~p~~~i~W~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~L~i~~~~~~d~-G~Y~C~ 389 (540)
.+.+|+.+.|.|.+. +.|.+.+.|+++|..+.. ..+..... . .++.....+|.|.++..+|+ |.|+|.
T Consensus 236 ~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~ 315 (349)
T 4dep_C 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315 (349)
T ss_dssp ---------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEE
T ss_pred EEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEE
Confidence 678899999999999 568899999999988765 22221100 0 01222344699999999999 999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.|..|....++.|.|..
T Consensus 316 a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 316 ARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp EECSSCEEEEECC-----
T ss_pred EEcCCCcEEEEEEEeeec
Confidence 999999999999888875
No 64
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.97 E-value=5.9e-30 Score=239.50 Aligned_cols=259 Identities=14% Similarity=0.200 Sum_probs=191.1
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|++++|.|.+.+ .+.|++++..+ .. .... + ..|.|.+++.+|+|.|+|.+.+ |. .
T Consensus 21 ~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~~-~~~~--~-----~~L~i~~~~~~d~G~Y~C~~~n--g~-~ 81 (290)
T 2o26_X 21 ELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----EM-VENK--K-----NEWIQEKAEATRTGTYTCSNSN--GL-T 81 (290)
T ss_dssp EEEEETTSCEEEEEECTT----EEEEEEECSSS----CE-EEEC--S-----SEEEETTCCGGGCEEEEEEESS--SC-E
T ss_pred eEEEcCCCcEEEEECCCC----cEEEecCCcce----ee-ecCC--C-----ceEEEeccCHHhCeEEEEEeeC--Cc-c
Confidence 456889999999999866 89999998766 11 1100 1 3899999999999999999999 43 6
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC-CeEEEE-eCCEEeeccCceEEEEecCCCeEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWF-KADKLVKESSKIKIIVNEQDDTYEII 268 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (540)
..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+......... .. . .
T Consensus 82 ~~~~l~V~~-------~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~--~~-~----~ 146 (290)
T 2o26_X 82 SSIYVFVRD-------PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPN--PK-A----G 146 (290)
T ss_dssp EEEEEEEEC-------SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEE--TT-T----E
T ss_pred EEEEEEEeC-------CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeC--CC-C----C
Confidence 677777775 333334455667778999999999985 77 899994 678777654433222 11 1 6
Q ss_pred EEEeCCCCCCcE-EEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEE
Q psy670 269 CEITDPIGPDSG-TYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVW 345 (540)
Q Consensus 269 l~i~~~~~~d~g-~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W 345 (540)
|.|.+++.+|+| .|+|.+.|..+.. +..+.+.|.... ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|
T Consensus 147 L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~---~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W 223 (290)
T 2o26_X 147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI---KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223 (290)
T ss_dssp EEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC---CSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEE
T ss_pred EEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC---CCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEE
Confidence 899999999999 9999999985542 234667665321 2277777777667888999999999999999996 999
Q ss_pred EECCEEc----cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 346 FHEGKEL----QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 346 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+++|..+ ......... ..........|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 224 LKMNPQPQHIAQVKHNSWHR-GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EEESSSEEECCCEECCEEEE-ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred ecCCCCCccceeeccccccc-CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 9998763 322222111 000112234899999999999999999999999999999888876
No 65
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.97 E-value=2.7e-31 Score=254.01 Aligned_cols=274 Identities=19% Similarity=0.269 Sum_probs=140.4
Q ss_pred cceeeeCc-ceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 8 KSYTLEGE-PTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 8 ~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
+.|.+.|. |. +.+.|+|+|..+..+.++.+. ..+|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 28 l~C~~~~~~p~------~~v~W~k~g~~~~~~~~~~~~----------~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~ 90 (334)
T 1ry7_B 28 LSCPPPGGGPM------GPTVWVKDGTGLVPSERVLVG----------PQRLQVLNASHEDSGAYSCRQRLT-QRVLCHF 90 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeeCCCCCCC------cceEEEECCeeCCCcccEEec----------cceEEEeecccccCEEEEEEEEeC-CeEEEEE
Confidence 56999887 45 799999999998776665541 258999999999999999999998 7666777
Q ss_pred EEEEeecCCccc-----------cCCCCCCCC------CCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCce
Q psy670 87 NLNFSEEDGKLK-----------VPGGKAPRF------PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI 149 (540)
Q Consensus 87 ~l~v~~~~~~~~-----------i~~~~~~~~------~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~ 149 (540)
.|.|...+.... .....+|.+ ......+.+|+.+.|.|.+.|.|.+.+.|++++..+....+.
T Consensus 91 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~ 170 (334)
T 1ry7_B 91 SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 170 (334)
T ss_dssp ----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSST
T ss_pred EEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccc
Confidence 777765431110 000011221 122346789999999999999999999999999888655432
Q ss_pred EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEE
Q psy670 150 KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMK 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~ 228 (540)
...... .. ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+. .+|.+.. .+....+.+|+.+.|.
T Consensus 171 ~~~~~~-~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~G~~v~l~ 243 (334)
T 1ry7_B 171 GGIKLR-HQ---QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP---HRPILQAGLPANQTAVLGSDVEFH 243 (334)
T ss_dssp TCCCCC-TT---TTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC---SSCBCCTTCSCCEEEESSCCEEEC
T ss_pred cceecc-cc---eEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC---CCCceEecCCCceEEeCCCCEEEE
Confidence 111110 11 12799999999999999999999999888888888875332 1333332 3456677889999999
Q ss_pred EEecccCCCeEEEEe----CCEEeeccCceEEEEecCC-----CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670 229 CKCSAKPRPEVKWFK----ADKLVKESSKIKIIVNEQD-----DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299 (540)
Q Consensus 229 C~~~~~p~~~v~W~~----~~~~l~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 299 (540)
|.+.+.|.+.+.|++ +|..+.............. ......|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 244 C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 323 (334)
T 1ry7_B 244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323 (334)
T ss_dssp CCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEE
T ss_pred EEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEE
Confidence 999999999999999 6666544332111111000 0111369999999999999999999999999888888
Q ss_pred EEeecc
Q psy670 300 NIEAEA 305 (540)
Q Consensus 300 ~v~~~~ 305 (540)
.|...+
T Consensus 324 ~V~~~~ 329 (334)
T 1ry7_B 324 VVLPAE 329 (334)
T ss_dssp EEECSC
T ss_pred EEEECC
Confidence 887643
No 66
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.97 E-value=1.7e-29 Score=236.30 Aligned_cols=265 Identities=15% Similarity=0.202 Sum_probs=194.2
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+.++|.|.+.+ .+.|++++.... .... ......|.|.+++.+|+|.|+|.+.+..+...
T Consensus 13 ~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~-----~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 78 (289)
T 3ejj_X 13 ELVVEPGETVTLRCVSNG----SVEWDGPISPYW-----TLDP-----ESPGSTLTTRNATFKNTGTYRCTELEDPMAGS 78 (289)
T ss_dssp EEEECTTCCEEEEEECSS----CCEEECSCSSSS-----EECC-----CSSCCEEEESSCCGGGCEEEEEECCC-----C
T ss_pred eEEECCCCCEEEEEEeCC----cEEEccCCCceE-----EEec-----cCCccEEEEeeeccccCEEEEEEEeccCCcce
Confidence 356889999999999866 599998764321 1100 00112899999999999999999998888778
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEe-CCEEeeccCceEEEEecCCCeEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFK-ADKLVKESSKIKIIVNEQDDTYEII 268 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (540)
..+.|.|...+ ..+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+.......... . ..
T Consensus 79 ~~~~l~V~~~~------~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~-----~~ 145 (289)
T 3ejj_X 79 TTIHLYVKDPA------HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP--W-----RG 145 (289)
T ss_dssp EEEEEEECCSS------CSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET--T-----TE
T ss_pred eEEEEEEeCCC------cceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC--C-----CC
Confidence 88888887522 1144555677888999999999999866654 99986 666665544443321 1 15
Q ss_pred EEEeCCCCCCcEEEEEEEE-cCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCCeEEEE
Q psy670 269 CEITDPIGPDSGTYRCNVK-NEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWF 346 (540)
Q Consensus 269 l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~ 346 (540)
|.|.+++.+|+|.|+|.+. +..+.....+.|.|.... ..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|+
T Consensus 146 L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~---~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~ 222 (289)
T 3ejj_X 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH---PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK 222 (289)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSC---CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEE
T ss_pred EEEeecccccCEEEEEEEEeCCCccccccEEEEEEECC---CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEE
Confidence 9999999999999999999 444555666777776422 12677777777777789999999999998 789999999
Q ss_pred ECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 347 HEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+++..+........ ..........|.|.+++.+|+|.|+|.|.|..|....++.|.+..
T Consensus 223 ~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 223 RGDTKLEIPLNSDF--QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp ETTEECCCCEEEEE--CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred ECCEEeeccCCccc--ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence 99998865432211 111222244899999999999999999999999999999998865
No 67
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.97 E-value=4e-30 Score=243.76 Aligned_cols=265 Identities=17% Similarity=0.229 Sum_probs=188.8
Q ss_pred ccceeeeCcc-eeEEeecceeeeeecCeeccc----CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670 7 LKSYTLEGEP-TKQIEANFQMNMYHKGSLLKM----SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE 81 (540)
Q Consensus 7 ~~~c~~~g~p-~~~~~~~~~~~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~ 81 (540)
.+.|.+.|.| . +.|.|+|+|..+.. ..++.. . + .+|.|.+++.+|+|.|+|.+.|..|.
T Consensus 24 ~L~C~~~~~~~~------~~v~W~k~~~~~~~~~~~~~~~~~--~-~-------~~L~i~~v~~~D~G~Y~C~a~n~~g~ 87 (315)
T 1itb_B 24 VRPCPLNPNEHK------GTITWYKDDSKTPVSTEQASRIHQ--H-K-------EKLWFVPAKVEDSGHYYCVVRNSSYC 87 (315)
T ss_dssp CCBCCCCSCCCS------SCCCEECTTSCSCSCCCTTSSSEE--C-S-------SBEECTTCCGGGCSCCEECCCSSSCC
T ss_pred EEEeeccCcCCC------ceEEEEeCCCcCccccccCCcEec--c-C-------CeEEECCCChhhCEEEEEEEeCCceE
Confidence 3679999888 4 79999999975422 233322 1 2 37999999999999999999998877
Q ss_pred eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE------eecCCCceEEEeCCEeecCCCceEEEEee
Q psy670 82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL------EASPMPDIIWYQGTKVIEDTGRIKMSKKS 155 (540)
Q Consensus 82 ~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 155 (540)
....+.+.+...++.+... +. ......+.+|+.+.|.|.+ .|.|.+.+.|++++..+..........
T Consensus 88 ~~~~~~v~v~~~~p~~~~~----~~-~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~-- 160 (315)
T 1itb_B 88 LRIKISAKFVENEPNLCYN----AQ-AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-- 160 (315)
T ss_dssp CCEECCCEEECCCTTSSSC----GG-GEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE--
T ss_pred EEEEEEEEEeCCCCCcccc----cc-cccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec--
Confidence 6655555544332111110 00 0112457889999999998 788999999999999886543221111
Q ss_pred cCcceEEEEEEEcCCCCCCCeEEEEEEE-cCCcee---EEEEEEEEecCcCCCCCCCeeccCCce-eecCCCCeEEEEEE
Q psy670 156 IGKDTYLLRLEINNPTKDDGGNYRCNAC-NSIGES---NANIALNFQGGENGAGFAPSFIEKPRI-IPNESGTLIQMKCK 230 (540)
Q Consensus 156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~ 230 (540)
. ..|.|.+++.+|+|.|+|.+. +..|.. ...+.+.+.... ...+|.+...+.. ..+.+|+.+.|.|.
T Consensus 161 ---~---~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~~~~g~~v~l~C~ 232 (315)
T 1itb_B 161 ---K---DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN--KPTRPVIVSPANETMEVDLGSQIQLICN 232 (315)
T ss_dssp ---T---TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC--CCCCCEECSCCSEEEECCSSSCEEEEEE
T ss_pred ---C---ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC--CCCCCEEecCCCCcEEEeCCCcEEEEEE
Confidence 1 189999999999999999999 677765 334444333211 1236777655543 57889999999999
Q ss_pred ecccCCCeEEEEeCCEEeeccCceEE----EEecC----CCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCCeeeeEEEEE
Q psy670 231 CSAKPRPEVKWFKADKLVKESSKIKI----IVNEQ----DDTYEIICEITDPIGPD-SGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 231 ~~~~p~~~v~W~~~~~~l~~~~~~~~----~~~~~----~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
+.+.|.+.+.|+++|..+........ ..... .......|.|.+++.+| +|.|+|.|.|..|.....+.|.|
T Consensus 233 ~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v 312 (315)
T 1itb_B 233 VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312 (315)
T ss_dssp EEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred EecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence 99999999999999999876543211 11111 01234589999999999 99999999999999988887776
Q ss_pred e
Q psy670 302 E 302 (540)
Q Consensus 302 ~ 302 (540)
.
T Consensus 313 ~ 313 (315)
T 1itb_B 313 P 313 (315)
T ss_dssp C
T ss_pred c
Confidence 4
No 68
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=242.14 Aligned_cols=280 Identities=16% Similarity=0.276 Sum_probs=179.1
Q ss_pred CCccccCCCeEEEEEEEeec-CCCceEEEeCCEeec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670 110 KPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 179 (540)
....+.+|+++.|.|.+.+. |.+.+.|+|++.... ...+................|.|.+++.+|+|.|+
T Consensus 11 ~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 90 (327)
T 2wng_A 11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYY 90 (327)
T ss_dssp SEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEE
T ss_pred CceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEE
Confidence 34678899999999999887 888999999875321 01122221111111122337999999999999999
Q ss_pred EEEEcCCcee-----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCC--eEEEEeCCEEeeccC
Q psy670 180 CNACNSIGES-----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP--EVKWFKADKLVKESS 252 (540)
Q Consensus 180 C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~ 252 (540)
|.+.+..+.. ...+.|.|...+. +|.+. .+ ...+.+|+.+.|.|.+.+.|++ .+.|+++|..+....
T Consensus 91 C~a~n~~~~~~~~~~~~~~~l~V~~~p~----~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~ 164 (327)
T 2wng_A 91 CVKFRKGSPDTEFKSGAGTELSVRAKPS----APVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ 164 (327)
T ss_dssp EEEEESSTTCEEEEECCCEEEEEEBCCC----CCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred EEeecCCCcceeEeecCcEEEEEEecCC----Cceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence 9999876531 2345677765332 34443 22 3567789999999999987655 899999999886543
Q ss_pred ceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCe---eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCC
Q psy670 253 KIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK 327 (540)
Q Consensus 253 ~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~ 327 (540)
.. .......+ ...+.|.|.....+|.|.|+|.+.|..+.. .....+.+.. ..+|.+...+.. +.+|+
T Consensus 165 ~~-~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v-----~~~P~i~~~~~~--~~~G~ 236 (327)
T 2wng_A 165 TN-VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI-----RVPPTLEVTQQP--VRAEN 236 (327)
T ss_dssp EE-EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB-----CBCCEEEEEEEC--CSSTT
T ss_pred cc-cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc-----CCCCEEEEecCC--cCCCC
Confidence 22 11111222 223468888877778899999999987652 2233332222 125665544333 67899
Q ss_pred eEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEE
Q psy670 328 LVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTL 403 (540)
Q Consensus 328 ~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l 403 (540)
.+.|.|.+.|. |++ .+.|+++|..+............++. ...+.|.|..+..+|+|.|+|.|.|..+.. .+++.+
T Consensus 237 ~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~ 316 (327)
T 2wng_A 237 QVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL 316 (327)
T ss_dssp CCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred cEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence 99999999995 444 89999999988653222111122222 223478999999999999999999998864 444443
No 69
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=239.53 Aligned_cols=269 Identities=17% Similarity=0.244 Sum_probs=189.1
Q ss_pred CccccCCCeEEEEEEEeec-CCCceEEEeCCEeecC-----------------CCceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIED-----------------TGRIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
.+.+.+|++++|.|.+.+. +.+.+.|+|++..... ..+..+.. ......+|.|.+++.
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~ 83 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKN----YSLNDATITLHNIGF 83 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESC----CSSSBCCEEECSCCG
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeec----cCCCceEEEEccCCH
Confidence 3567799999999998544 4457999986432110 01111111 011123799999999
Q ss_pred CCCeEEEEEEEcC-CceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeec
Q psy670 173 DDGGNYRCNACNS-IGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKE 250 (540)
Q Consensus 173 ~d~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~ 250 (540)
+|+|.|+|.+.+. .+.....+.+.+...+ .+.+...+.......|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~ 158 (308)
T 4fom_A 84 SDSGKYICKAVTFPLGNAQSSTTVTVLVEP-----TVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMES 158 (308)
T ss_dssp GGCEEEEEEEEETTTEEEEEEEEEEEEBCC-----EEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCE
T ss_pred HHCEEEEEEEeeCCCcceeeeeEEEeeecc-----ccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccc
Confidence 9999999999886 4556666777766422 1222334445556678999999986 5799999999999987653
Q ss_pred cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE--EEEEeeccCCCCCCCeEEeC-CceEEeeCCC
Q psy670 251 SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL--NLNIEAEAEPEGDPPTFIEK-PKIRSEQGGK 327 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~--~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~ 327 (540)
... ..........+.|.|.++..+|.|.|+|.|.|..+...... .|.|.. +|.+... .....+..|+
T Consensus 159 ~~~---~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~~~~~~~~~~~~~~g~ 228 (308)
T 4fom_A 159 TTT---SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY-------APEVSVTGYDGNWFVGRK 228 (308)
T ss_dssp EEE---ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE-------EEEECCBCCCSCEETTCC
T ss_pred ccc---eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec-------CCeeEEcccceeeeeccc
Confidence 321 11112233345799999999999999999999877654443 344433 3444322 3344566789
Q ss_pred eEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 328 LVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 328 ~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.++|.|.+.|.|.| .+.|++++..+...... .++. .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 229 ~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~------~~~~---~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~ 299 (308)
T 4fom_A 229 GVNLKCNADANPPPFKSVWSRLDGQWPDGLLA------SDNT---LHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS 299 (308)
T ss_dssp SCEEECCEEEESCEEEEECCBSSSCCCSSCBC------STTE---EECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred cEEEEEEEecCCCCcEEEEEECCeECCCcEEE------cCCe---EEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 99999999999988 69999999877654321 1221 57788999999999999999999999999999998
Q ss_pred E
Q psy670 407 M 407 (540)
Q Consensus 407 ~ 407 (540)
.
T Consensus 300 ~ 300 (308)
T 4fom_A 300 D 300 (308)
T ss_dssp C
T ss_pred c
Confidence 8
No 70
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=231.21 Aligned_cols=232 Identities=18% Similarity=0.306 Sum_probs=180.1
Q ss_pred ccccCCCeEEEEEEEeecCCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+.+|+.+.|.|.+.+.|.+ .+.|+++|..+..... .|.|.+++.+|+|.|+|.+.+..+..
T Consensus 11 ~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~---------------~l~i~~~~~~d~G~Y~C~~~~~~~s~- 74 (262)
T 3rjd_A 11 VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYRITSASVNDSGEYRCQRGLSGRSD- 74 (262)
T ss_dssp SEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEEEEESSSCCCC-
T ss_pred EEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCC---------------eEEEecCCcccCeEEEEEEecCCccc-
Confidence 467899999999999888887 9999999998864321 79999999999999999998765543
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
.+.|.|.. ++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... ...|
T Consensus 75 -~~~l~v~~-------~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~------------~~~l 133 (262)
T 3rjd_A 75 -PIQLEIHR-------GW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW------------NSNL 133 (262)
T ss_dssp -CEEEEEEC-------SS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE------------CCCE
T ss_pred -cEEEEEec-------cc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCC------------CCeE
Confidence 45566653 22 2223334556789999999999 6688889999999988743211 1268
Q ss_pred EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC-C----eEE
Q psy670 270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM-P----EIV 344 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~----~i~ 344 (540)
.|.+++.+|+|.|+|.+.+..+.....+.+.|.... .+|.+...+ ...+.+|+.+.|.|.+.+.|. + .+.
T Consensus 134 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~----~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~ 208 (262)
T 3rjd_A 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF----PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFS 208 (262)
T ss_dssp EESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS----CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEE
T ss_pred EEEECChhhCEEEEEEEeCCCCccccceEEEeccCC----CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEE
Confidence 999999999999999999988777777788887532 145555544 455788999999999999875 4 368
Q ss_pred EEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 345 WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 345 W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
|++++..+... .... .|.|.+++.+|+|.|+|.|.|..|..
T Consensus 209 w~~~~~~~~~~--------~~~~----~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 209 FYMGSKTLRGR--------NTSS----EYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp EEETTEEEEEE--------ESCC----EEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred EEeCCcEeccc--------CCCc----eEEEEEechhhCeEEEEEEEcccCce
Confidence 99999877431 1111 79999999999999999999999864
No 71
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.97 E-value=6.2e-29 Score=236.79 Aligned_cols=248 Identities=17% Similarity=0.209 Sum_probs=175.8
Q ss_pred ecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCe-eEEEEEEccCcceeeeEEEEEeecCCccccC
Q psy670 22 ANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSG-EYKVIAKNKNGEGSSTVNLNFSEEDGKLKVP 100 (540)
Q Consensus 22 ~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~ 100 (540)
|.+.|.|+|++..+....+. ..+ .+|.|.+++.+|+| .|+|.+.|..|.......+.+...++.. ..
T Consensus 66 p~~~v~W~k~~~~~~~~~~~----~~~-------~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~-~~ 133 (329)
T 3oq3_B 66 KDNVVNWEKIGKTRRPLNRR----VKN-------GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSC-IP 133 (329)
T ss_dssp TTCEEEEEECSSSCEECSTT----EET-------TEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSC-EE
T ss_pred CCCeeEEEECCCCccccCce----eec-------ceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcE-ec
Confidence 44899999999877654443 123 38999999999999 9999999988765444433333322110 00
Q ss_pred CCCCCCCCCCCccccCCCeEEEEEEEeecC-CCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670 101 GGKAPRFPKKPTIHQDGDLLVMECVLEASP-MPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY 178 (540)
Q Consensus 101 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 178 (540)
......+.+|+.+.|.|.+.|.| .+.+.|+|++..+... .++... . ..|.|.+++.+|+|.|
T Consensus 134 -------~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~--------~~L~I~~v~~~D~G~Y 197 (329)
T 3oq3_B 134 -------ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-G--------QNLIIHNPELEDSGRY 197 (329)
T ss_dssp -------EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-T--------TEEEECSCCGGGCEEE
T ss_pred -------cccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-C--------CEEEEeecChhhCEEE
Confidence 01123467899999999999999 8999999999988533 232222 1 2899999999999999
Q ss_pred EEEEEcC--Ccee----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC---CC-eEEEEeCCEEe
Q psy670 179 RCNACNS--IGES----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP---RP-EVKWFKADKLV 248 (540)
Q Consensus 179 ~C~~~~~--~~~~----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~-~v~W~~~~~~l 248 (540)
+|.+.|. .|.. ...+.|.|...+.. ...+. .+....+.+|+.+.|.|.+.+.| .+ .+.|++++..+
T Consensus 198 ~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~---~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i 273 (329)
T 3oq3_B 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDH---RFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI 273 (329)
T ss_dssp EEEEEECCTTSSSCEEEEEEEEEEEECCCCC---CEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB
T ss_pred EEEEEecccCCCceeEEEeeEEEEEECCCCC---CCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeee
Confidence 9999986 4432 33466777652210 01223 56667888999999999999987 67 88999999874
Q ss_pred -eccCceEEEEecCCCeEEEEEEEeCCCCCCcE-EEEEEEEcCCCCeeeeEEEEE
Q psy670 249 -KESSKIKIIVNEQDDTYEIICEITDPIGPDSG-TYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~l~v 301 (540)
....................|.|.+++.+|.| .|+|.|.|..|.....+.|.|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 274 IGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp CCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred eccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 33332222211122245668999999999999 999999999998887777665
No 72
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=247.92 Aligned_cols=279 Identities=18% Similarity=0.262 Sum_probs=202.5
Q ss_pred CCccccCCCeEEEEEEEe-------ecCCCceEEEeCCEee--cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEE
Q psy670 110 KPTIHQDGDLLVMECVLE-------ASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~-------~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 180 (540)
....+.+|+.+.|.|.+. +.|.+.+.|++++..+ ......++... + ..|.|.+++.+|+|.|+|
T Consensus 26 ~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~----~---~~L~i~~v~~~D~G~Y~C 98 (339)
T 3o4o_C 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQ----D---GALWLLPALQEDSGTYVC 98 (339)
T ss_dssp CCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEE----T---TEEEESSBCTTCCEEEEC
T ss_pred eEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEee----C---CeEEECCCCcccCEEEEE
Confidence 346788999999999997 8889999999998873 33212222211 1 179999999999999999
Q ss_pred EEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEE-----ecccCCCeEEEEeCCEEeeccCceE
Q psy670 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK-----CSAKPRPEVKWFKADKLVKESSKIK 255 (540)
Q Consensus 181 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~v~W~~~~~~l~~~~~~~ 255 (540)
.+.+..+.....+.|.|...+. +..........+.+|+.+.|.|. +.+.|.+.+.|++++..+.......
T Consensus 99 ~~~n~~g~~~~~~~l~V~~~~~-----~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~ 173 (339)
T 3o4o_C 99 TTRNASYCDKMSIELRVFENTD-----AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF 173 (339)
T ss_dssp CEEETTEEEEEEEEEEEECSCG-----GGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred EEECCcceEEEEEEEEEEcCCC-----ccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence 9999998888888888885321 11111223346778999999999 7788999999999998886553222
Q ss_pred EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC----eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEE
Q psy670 256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVM 331 (540)
Q Consensus 256 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l 331 (540)
... ... ..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|... +...+|.+...+....+..|+.+.|
T Consensus 174 ~~~-~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~--~~~~~P~i~~~~~~~~v~~G~~v~L 246 (339)
T 3o4o_C 174 LSV-RGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK--KEETIPVIISPLKTISASLGSRLTI 246 (339)
T ss_dssp EEC-TTS----SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECC--CCCCCCEECCCSCCCCCCCCSCCCC
T ss_pred EEc-CCc----ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcC--CCCCCCEEecCCceeEeccCCCEEE
Confidence 211 111 27999999999999999999998764 344555666543 2233666666666677889999999
Q ss_pred EEEE---EccC-CCeEEEEECCEEccCCC---ceE----EEEEecC-CeeEEEEEEcCCCCCCC-eeEEEEEEcCCeeeE
Q psy670 332 ECKV---KAKP-MPEIVWFHEGKELQQTD---RIS----WNVTLKG-DKYHIRLEVKDPRKEDT-GLYKCNIKNFHGELN 398 (540)
Q Consensus 332 ~C~~---~~~p-~~~i~W~~~~~~~~~~~---~~~----~~~~~~~-~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~~ 398 (540)
.|.+ .|.| .+.+.|+++|..+.... ... .....++ ....+.|.|.+++.+|+ |.|+|.|.|..|...
T Consensus 247 ~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~ 326 (339)
T 3o4o_C 247 PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT 326 (339)
T ss_dssp CCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEEC
T ss_pred EEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceE
Confidence 9999 8888 88999999998764321 111 1111122 22244799999999997 999999999999998
Q ss_pred EEEEEEEEE
Q psy670 399 ANLTLNIEM 407 (540)
Q Consensus 399 ~~~~l~V~~ 407 (540)
..+.+.+..
T Consensus 327 ~~~~~~~~~ 335 (339)
T 3o4o_C 327 LRTTVKEHH 335 (339)
T ss_dssp CBCCCCC--
T ss_pred EEEEhhHhc
Confidence 877776543
No 73
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.96 E-value=5.4e-29 Score=237.75 Aligned_cols=267 Identities=18% Similarity=0.250 Sum_probs=193.2
Q ss_pred CccccCCCeEEEEEEEeec----CCCceEEEeCC--Ee-------------e--cCCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEAS----PMPDIIWYQGT--KV-------------I--EDTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~----p~~~v~W~~~~--~~-------------~--~~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+. +.+.+.|++++ .. + ....++.+.. ......+|.|.+
T Consensus 23 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~ 98 (331)
T 3u83_A 23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR----PSFTDGTIRLSR 98 (331)
T ss_dssp EEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESS----CSSSBCCEEECS
T ss_pred cEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecc----cCCCCceEEEcc
Confidence 4568899999999999765 34479999954 11 1 1122332221 011123799999
Q ss_pred CCCCCCeEEEEE-EEcCCceeEEEEEEEEecCcCCCCCCCee--ccCCceeecCCC---CeEEEEEE-ecccCCCeEEEE
Q psy670 170 PTKDDGGNYRCN-ACNSIGESNANIALNFQGGENGAGFAPSF--IEKPRIIPNESG---TLIQMKCK-CSAKPRPEVKWF 242 (540)
Q Consensus 170 ~~~~d~G~Y~C~-~~~~~~~~~~~~~l~v~~~~~~~~~~p~~--~~~~~~~~~~~g---~~~~l~C~-~~~~p~~~v~W~ 242 (540)
++.+|+|.|+|. +.+..+.....+.|.|.. +|.+ ...+....+.+| +.+.|.|. +.+.|.+.+.|+
T Consensus 99 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~ 171 (331)
T 3u83_A 99 LELEDEGVYICEFATFPTGNRESQLNLTVMA-------KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWE 171 (331)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEE
T ss_pred cCcccCcEEEEEEEecCCCccEEEEEEEEec-------CCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEE
Confidence 999999999998 455567777888888885 4433 224455667777 88999998 778999999999
Q ss_pred eCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE-eCCceE
Q psy670 243 KADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI-EKPKIR 321 (540)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~ 321 (540)
+++....... ..............|.|.++..+|+|.|+|.+.|..+.....+.|.|.. +|.+. ..+...
T Consensus 172 ~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-------~P~~~~~~~~~~ 242 (331)
T 3u83_A 172 TRLKGEAEYQ--EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-------EPEVTIEGFDGN 242 (331)
T ss_dssp ESSCCEEEEE--EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE-------EEEEEEECCCSC
T ss_pred cCCCCccccc--eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec-------CCeEEEecCCCc
Confidence 9532211110 0111111222335799999999999999999999988877778887766 44444 333445
Q ss_pred EeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEecCCeeEEEEEEc-CCCCCCCeeEEEEEEcCCeeeEE
Q psy670 322 SEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK-DPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 322 ~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~-~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
.+.+|+.+.|.|.+.+.|.+. +.|++++..+...... .+. +|.|. ++..+|+|.|+|.|.|..|....
T Consensus 243 ~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~------~~~----~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~ 312 (331)
T 3u83_A 243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA------QNR----TLFFKGPINYSLAGTYICEATNPIGTRSG 312 (331)
T ss_dssp CBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEE------ETT----EEEECSCCCGGGCEEEEEEEEETTEEEEE
T ss_pred eEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccccee------cCc----EEEEeCCCccccCeEEEEEEEeccccceE
Confidence 577899999999999999998 9999999887554211 122 79999 89999999999999999999999
Q ss_pred EEEEEEEE
Q psy670 400 NLTLNIEM 407 (540)
Q Consensus 400 ~~~l~V~~ 407 (540)
++.|.|..
T Consensus 313 ~~~l~V~~ 320 (331)
T 3u83_A 313 QVEVNITE 320 (331)
T ss_dssp EEEECCBC
T ss_pred EEEEEEec
Confidence 99998876
No 74
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.8e-28 Score=229.40 Aligned_cols=241 Identities=14% Similarity=0.164 Sum_probs=176.7
Q ss_pred eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCC
Q psy670 25 QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA 104 (540)
Q Consensus 25 ~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~ 104 (540)
.+.|+|++..+. .. ...+ ++|.|.+++.+|+|.|+|.+.| |. ..++.|.|..++...
T Consensus 39 ~i~W~~~~~~~~------~~-~~~~------~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~~~------- 95 (290)
T 2o26_X 39 FVRWTFKTYFNE------MV-ENKK------NEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAKLF------- 95 (290)
T ss_dssp EEEEEEECSSSC------EE-EECS------SEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSCCB-------
T ss_pred cEEEecCCccee------ee-cCCC------ceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCccc-------
Confidence 699999998771 11 1112 4899999999999999999999 43 677788887654211
Q ss_pred CCCCCCCccccCCCeEEEEEEEeecCC-CceEEE-eCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEE
Q psy670 105 PRFPKKPTIHQDGDLLVMECVLEASPM-PDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCN 181 (540)
Q Consensus 105 ~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~ 181 (540)
.......+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+....++..... . .|.|.+++.+|+| .|+|.
T Consensus 96 --~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~-----~---~L~i~~v~~~d~G~~Y~C~ 164 (290)
T 2o26_X 96 --LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPK-----A---GITIKNVKRAYHRLCVRCA 164 (290)
T ss_dssp --CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETT-----T---EEEEESCCGGGTTCEEEEE
T ss_pred --ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCC-----C---CEEEecccHHHCCCEEEEE
Confidence 1233456779999999999975 77 899995 68888766544433321 1 7999999999999 99999
Q ss_pred EEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEe----eccCceE
Q psy670 182 ACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLV----KESSKIK 255 (540)
Q Consensus 182 ~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l----~~~~~~~ 255 (540)
+.|..+.. +..+.|.|.... ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+ .......
T Consensus 165 a~n~~~~~~s~~~~l~V~~~~---~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~ 241 (290)
T 2o26_X 165 AQRDGTWLHSDKFTLKVREAI---KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSW 241 (290)
T ss_dssp EEETTEEEECCCEEEEEECCC---CSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEE
T ss_pred EEECCceEEeEEEEEEEEeCC---CCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccc
Confidence 99986553 335777776321 1377777777777889999999999999999886 9999998773 2222221
Q ss_pred EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 256 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
.. ..........|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 242 ~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 242 HR-GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EE-ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred cc-CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 11 111223345899999999999999999999999887777777654
No 75
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.96 E-value=3e-28 Score=224.58 Aligned_cols=239 Identities=17% Similarity=0.268 Sum_probs=176.9
Q ss_pred CccccCCCeEEEEEEEee-cCCC--ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcC---CCCCCCe--EEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMP--DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN---PTKDDGG--NYRCNA 182 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~---~~~~d~G--~Y~C~~ 182 (540)
+..+.+|+.++|.|.+.+ .|.+ .+.|+|+|..+.. . .... .. .|.+.. ++.+|+| .|+|.+
T Consensus 12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~--~~~~---~~----~~~~~~~~~~~~~d~g~g~Y~C~a 80 (265)
T 2oz4_A 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--T--VTYG---ND----SFSAKASVSVTAEDEGTQRLTCAV 80 (265)
T ss_dssp CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--E--EEEC---SS----EEEEEEEEEECGGGCEEEEEEEEE
T ss_pred CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--e--EeeC---CC----eEEEEeecccccccCCcceEEEEE
Confidence 346889999999999988 7776 9999999998754 1 1111 11 333333 3677877 599999
Q ss_pred EcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCC
Q psy670 183 CNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262 (540)
Q Consensus 183 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~ 262 (540)
.|..+.....+.|.|...+ +|.+. +....+.+|+.+.|.|.+. |.+.+.| +|..+....
T Consensus 81 ~n~~~~~~~~~~l~V~~~p-----~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~---------- 139 (265)
T 2oz4_A 81 ILGNQSQETLQTVTIYSFP-----APNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---------- 139 (265)
T ss_dssp EETTEEEEEEEEEEEECCC-----CCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS----------
T ss_pred ecCCCCcEEEEEEEEeCCC-----Cceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC----------
Confidence 9999888888888887532 23333 2344566799999999998 8899999 776663211
Q ss_pred CeEEEEEEEeCCCCCCcEEEEEEEEcCC-CCee---eeEEEEEeeccCCCCCCCeEEe--CCceEEeeCCCeEEEEEEEE
Q psy670 263 DTYEIICEITDPIGPDSGTYRCNVKNEF-GESN---ANLNLNIEAEAEPEGDPPTFIE--KPKIRSEQGGKLVVMECKVK 336 (540)
Q Consensus 263 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~---~~~~l~v~~~~~~~~~~p~~~~--~~~~~~~~~g~~v~l~C~~~ 336 (540)
....|.+..+..+|+|.|+|.+.|.. |... ..+.|.|... |.+.. .+....+.+|+.+.|.|.+.
T Consensus 140 --~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~-------p~~~~~~~p~~~~v~~g~~~~l~C~~~ 210 (265)
T 2oz4_A 140 --PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-------PRLDERDCPGNWTWPENSQQTPMCQAW 210 (265)
T ss_dssp --SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEE-------EECCGGGSCSEEEEETTCEECCCCCCE
T ss_pred --CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeC-------CccccccCCCccEEcCCCeEEEEeECc
Confidence 12368899999999999999998644 6554 5667777663 33222 24466788999999999999
Q ss_pred ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 337 AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 337 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
|.|.|.+.|+++|..+... + .+. .++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 211 g~P~p~i~W~~~~~~~~~~----------g-----~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 211 GNPLPELKCLKDGTFPLPI----------G-----ESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EESCCEEEEEETTTEECCT----------T-----SCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cCCCCeEEEEECCcccCCC----------C-----cEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 9999999999998732221 2 122 2677999999999999999999999998874
No 76
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=234.84 Aligned_cols=265 Identities=10% Similarity=0.150 Sum_probs=167.9
Q ss_pred ccceeeeCc-ceeEEeecceeeeeecCeeccc---------CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEE
Q psy670 7 LKSYTLEGE-PTKQIEANFQMNMYHKGSLLKM---------SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAK 76 (540)
Q Consensus 7 ~~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~ 76 (540)
.+.|.+.|. |. +.|.|+|++.++.. ..++.+...... ......+|.|.+++.+|+|.|+|.+.
T Consensus 22 ~L~C~~~~~~p~------~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~ 94 (327)
T 2wng_A 22 ILHCTVTSLIPV------GPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTK-RENMDFSISISNITPADAGTYYCVKF 94 (327)
T ss_dssp EECCEESCCCSC------CCEEEEESCSTTCEEEEETTSSCCTTEEECC---C-TTCCBCCEEECSCCGGGCEEEEEEEE
T ss_pred EEEEEccCcCCC------ceEEEEECCCCCceEEEEcCCCCcceeeeeccccc-ccCceeEEEEccCccccCeEEEEEee
Confidence 367999987 76 89999999864320 113332111000 00123589999999999999999999
Q ss_pred ccCcc-----eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCCCce
Q psy670 77 NKNGE-----GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDTGRI 149 (540)
Q Consensus 77 ~~~~~-----~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~ 149 (540)
|..+. ....+.|.|...+..+.+. .....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+......
T Consensus 95 n~~~~~~~~~~~~~~~l~V~~~p~~p~i~--------~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~ 166 (327)
T 2wng_A 95 RKGSPDTEFKSGAGTELSVRAKPSAPVVS--------GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTN 166 (327)
T ss_dssp ESSTTCEEEEECCCEEEEEEBCCCCCEEE--------CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEE
T ss_pred cCCCcceeEeecCcEEEEEEecCCCceee--------ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccc
Confidence 98653 1245677777655333322 112457889999999999887765 89999999988654321
Q ss_pred EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee---EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEE
Q psy670 150 KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES---NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 226 (540)
.......+.....+.|.|.....+|+|.|+|.+.|..+.. .....+.+.. ..+|.+...+.. +.+|+.+.
T Consensus 167 ~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v-----~~~P~i~~~~~~--~~~G~~v~ 239 (327)
T 2wng_A 167 VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI-----RVPPTLEVTQQP--VRAENQVN 239 (327)
T ss_dssp EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB-----CBCCEEEEEEEC--CSSTTCCE
T ss_pred cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc-----CCCCEEEEecCC--cCCCCcEE
Confidence 1111111222334578898888888999999999987652 2333332221 125555443333 67899999
Q ss_pred EEEEeccc-CCC-eEEEEeCCEEeeccCceEEEEecCC-CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 227 MKCKCSAK-PRP-EVKWFKADKLVKESSKIKIIVNEQD-DTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 227 l~C~~~~~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
|.|.+.+. |++ .+.|+++|..+.............+ ....+.|.|..+..+|+|.|+|.|.|..+..
T Consensus 240 l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 240 VTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp EEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred EEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 99999984 444 7999999998865432222222221 1223578899999999999999999998764
No 77
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.96 E-value=2.2e-28 Score=231.40 Aligned_cols=268 Identities=16% Similarity=0.145 Sum_probs=182.6
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeec-------------ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLL-------------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKV 73 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 73 (540)
.+.|.+.|.|... ..-..+.|+|++... ....++++.....+ ......+|+|.+++.+|+|.|+|
T Consensus 19 ~L~C~v~~~~~~~-~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C 96 (313)
T 4fqp_A 19 TLPCYLQVPNMEV-THVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG-AELRNASLRMFGLRVEDEGNYTC 96 (313)
T ss_dssp EECCEEECCTTSC-CCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTT-SCCCBCCEEECSCCGGGCEEEEE
T ss_pred EEEEEEECCCCCc-cceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccC-CcccceEEEECcCChhhCEEEEE
Confidence 3679998877610 000148999998632 22333333211111 11123579999999999999999
Q ss_pred EEEc-cCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEE
Q psy670 74 IAKN-KNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKM 151 (540)
Q Consensus 74 ~~~~-~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~ 151 (540)
++.+ ..+..+..+.|.+...|.... ......+..|+.+.+.|.+ .+.|.+.+.|++++..+......
T Consensus 97 ~v~~~~~~~~~~~~~l~v~~~P~~~~---------~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~-- 165 (313)
T 4fqp_A 97 LFVTFPQGSRSVDIWLRVLAKPQNTA---------EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV-- 165 (313)
T ss_dssp EEECSSSCEEEEEEEECCBBCCEEEE---------EECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEE--
T ss_pred EEeeccCcceeeeeeeeeccCCccee---------cccceEeecCceEEEEEEccCccCCcEEEeecCCcccccccee--
Confidence 9864 445556666666655441111 1123346678889999987 57899999999998876533221
Q ss_pred EEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEE
Q psy670 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMK 228 (540)
Q Consensus 152 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~ 228 (540)
.....+.....+.|.|.....+|+|.|+|.+.|..+.. ...+.|.|.. +|.+.. ......+.+|+.++|.
T Consensus 166 ~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~v~~~~~~~~~~~~g~~v~l~ 238 (313)
T 4fqp_A 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-------PPEVSISGYDNNWYLGQNEATLT 238 (313)
T ss_dssp ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-------EEEEEEECCCSCEETTCCCEEEE
T ss_pred eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-------CCccccccccceeecCCCeEEEE
Confidence 11112223334579999999999999999999977654 4455555543 555532 3344456678999999
Q ss_pred EEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670 229 CKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304 (540)
Q Consensus 229 C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~ 304 (540)
|.+.|+|.+ .|.|++++..+...... . . .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus 239 C~~~g~P~p~~v~W~~~~~~l~~~~~~----~-~-----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 239 CDARSNPEPTGYNWSTTMGPLPPFAVA----Q-G-----AQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp EEEEEESCCCEEEEEETTBSCCTTEEE----E-T-----TEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred EEecCCCCCcEEEEEECCEECCCceEE----e-C-----CEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence 999999988 69999999887543211 1 1 16999999999999999999999999888888888764
No 78
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=225.66 Aligned_cols=263 Identities=16% Similarity=0.192 Sum_probs=176.2
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE-- 188 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-- 188 (540)
...+.+|++++|.|.+.+. +.|++++..+.. + ... .........|.|.+++.+|+|.|+|.+.|..|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~--~--~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~ 78 (289)
T 3mjg_X 9 ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ--E--MAK--AQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLET 78 (289)
T ss_dssp EEECCTTCCEEEEEEESSC----CEEEBTTBCCSE--E--EEE--CTTSCEEEEEEECSCCGGGCEEEEEECCC------
T ss_pred eEEEeCCCcEEEEEeccce----EEEECCCCCccc--c--eec--cCCCceeEEEEEccCChhhCEEEEEEEcccCCCCc
Confidence 4568899999999999764 999999987731 1 111 112223458999999999999999999998765
Q ss_pred -eEEEEEEEEecCcCCCCCCCeeccCCc--eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeE
Q psy670 189 -SNANIALNFQGGENGAGFAPSFIEKPR--IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265 (540)
Q Consensus 189 -~~~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~ 265 (540)
....+.|.|.... .+.+...+. ...+.+|+.+.|.|.+. .|.+.+.|++.+......... ... .
T Consensus 79 ~~~~~~~v~v~~p~-----~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~----~~~-~-- 145 (289)
T 3mjg_X 79 DERKRLYIFVPDPT-----VGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY----DHQ-R-- 145 (289)
T ss_dssp CCCEEEEEECCCTT-----CCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE----ETT-T--
T ss_pred CcEEeEEEEEECCC-----cCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee----cCC-c--
Confidence 2344555544211 111111111 25678999999999998 677889998865221111100 001 1
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEE
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV 344 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~ 344 (540)
.+. ...|+|.|+|.+.+..+.. +....+.|... .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.
T Consensus 146 --~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~ 214 (289)
T 3mjg_X 146 --GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-----SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFE 214 (289)
T ss_dssp --EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-----CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEE
T ss_pred --Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-----CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceE
Confidence 111 2468999999999766543 33345555432 24555555555678899999999999999999999
Q ss_pred EEECCEEccCCCceEEEEEec-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 345 WFHEGKELQQTDRISWNVTLK-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 345 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
|++++................ ......+|.|.+++.+|+|.|+|.|.|..|....++.|+|..
T Consensus 215 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 215 WTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278 (289)
T ss_dssp EECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred EEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence 998876544322222111111 133455899999999999999999999999999999999987
No 79
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.96 E-value=1.3e-28 Score=236.92 Aligned_cols=273 Identities=17% Similarity=0.249 Sum_probs=161.8
Q ss_pred cceeeeCcce-----eEEeecceeeeeecCeecc----c---CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEE
Q psy670 8 KSYTLEGEPT-----KQIEANFQMNMYHKGSLLK----M---SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIA 75 (540)
Q Consensus 8 ~~c~~~g~p~-----~~~~~~~~~~W~k~~~~l~----~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 75 (540)
+.|.+.|.|. ....|.+.+.|+|++.... . ....++... + .+|.|.+++.+|+|.|+|.+
T Consensus 27 L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-~-------~~L~i~~~~~~D~G~Y~C~a 98 (349)
T 4dep_C 27 IKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-K-------DVLWFRPTLLNDTGNYTCML 98 (349)
T ss_dssp EECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE-T-------TEEEESSCCGGGCEEEEEEE
T ss_pred EEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec-C-------CEEEEccCChhhCEEEEEEE
Confidence 5688887653 0023448999999995221 0 112222221 2 38999999999999999999
Q ss_pred EccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-----eecCCCceEEEeCCEeecCCCceE
Q psy670 76 KNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-----EASPMPDIIWYQGTKVIEDTGRIK 150 (540)
Q Consensus 76 ~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~ 150 (540)
.|..+.....+.|.|...+. ... ..........+.+|+.+.|.|.+ .+.|.+.+.|+|++..+....++.
T Consensus 99 ~n~~~~~~~~~~l~V~~~~~-~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~ 173 (349)
T 4dep_C 99 RNTTYCSKVAFPLEVVQKDS-CFN----SPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI 173 (349)
T ss_dssp ECSSCEEEEEEEEEEECCCT-TSC----CSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE
T ss_pred ecCCceEEEEEEEEEecCCc-ccC----cccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee
Confidence 99988888888888876441 110 01111223467899999999984 678999999999999886543332
Q ss_pred EEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-cee---EEEEEEEEecCcCCCCCCCeeccCCcee--ecCCCCe
Q psy670 151 MSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-GES---NANIALNFQGGENGAGFAPSFIEKPRII--PNESGTL 224 (540)
Q Consensus 151 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~--~~~~g~~ 224 (540)
... ..|.|.+++.+|+|.|+|.+.|.. +.. ...+.|.|...+.. ..+|.+...+... .+.+|+.
T Consensus 174 ~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~-~~~p~i~~~~~~~~~~v~~G~~ 243 (349)
T 4dep_C 174 PEG---------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN-AVPPVIHSPNDHVVYEKEPGEE 243 (349)
T ss_dssp EET---------TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG-CCSCEEC---------------
T ss_pred ecC---------CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC-CCCCeEecCCCceeEEEecCCc
Confidence 221 279999999999999999999976 443 56677777643211 1145554444322 6788999
Q ss_pred EEEEEEec----ccCCCeEEEEeCCEEeec-cCceEEE---E-ec-CCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCe
Q psy670 225 IQMKCKCS----AKPRPEVKWFKADKLVKE-SSKIKII---V-NE-QDDTYEIICEITDPIGPDS-GTYRCNVKNEFGES 293 (540)
Q Consensus 225 ~~l~C~~~----~~p~~~v~W~~~~~~l~~-~~~~~~~---~-~~-~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~ 293 (540)
+.|.|.+. +.|.+.+.|++++..+.. ....... . .. ........|.|.+++.+|. |.|+|.|.|..|..
T Consensus 244 v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~ 323 (349)
T 4dep_C 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV 323 (349)
T ss_dssp -CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE
T ss_pred EEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE
Confidence 99999998 578899999999988765 2111110 0 00 1122345699999999999 99999999999988
Q ss_pred eeeEEEEEee
Q psy670 294 NANLNLNIEA 303 (540)
Q Consensus 294 ~~~~~l~v~~ 303 (540)
...+.|.|..
T Consensus 324 ~~~~~l~v~~ 333 (349)
T 4dep_C 324 AKAAKVKQKV 333 (349)
T ss_dssp EEECC-----
T ss_pred EEEEEEeeec
Confidence 8887777754
No 80
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.96 E-value=6.3e-28 Score=225.63 Aligned_cols=247 Identities=15% Similarity=0.205 Sum_probs=180.1
Q ss_pred eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCC
Q psy670 25 QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA 104 (540)
Q Consensus 25 ~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~ 104 (540)
.+.|++++.... .......+ .+|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..++..+..
T Consensus 31 ~v~W~~~~~~~~-----~~~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~----- 94 (289)
T 3ejj_X 31 SVEWDGPISPYW-----TLDPESPG------STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNL----- 94 (289)
T ss_dssp CCEEECSCSSSS-----EECCCSSC------CEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEE-----
T ss_pred cEEEccCCCceE-----EEeccCCc------cEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceec-----
Confidence 499998875321 11111222 58999999999999999999998888788888888765522111
Q ss_pred CCCCCCCccccCCCeEEEEEEEeecCCCc-eEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 105 PRFPKKPTIHQDGDLLVMECVLEASPMPD-IIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 105 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
......+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....+....... .|.|.+++.+|+|.|+|.+
T Consensus 95 ---~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--------~L~i~~v~~~d~G~Y~C~a 163 (289)
T 3ejj_X 95 ---LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--------GFIIRKAKVLDSNTYVCKT 163 (289)
T ss_dssp ---SCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT--------EEEESSCCGGGCEEEEEEE
T ss_pred ---ccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC--------CEEEeecccccCEEEEEEE
Confidence 12455788999999999998776665 99986 67777665555443221 6999999999999999999
Q ss_pred E-cCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEec
Q psy670 183 C-NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNE 260 (540)
Q Consensus 183 ~-~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~ 260 (540)
. +..+.....+.|.|..... .+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+........ ..
T Consensus 164 ~~~~~~~~~~~~~l~V~~~~~---~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~ 238 (289)
T 3ejj_X 164 MVNGRESTSTGIWLKVNRVHP---EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF--QD 238 (289)
T ss_dssp EETTEEEECCCEEEEEESSCC---CCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEE--CS
T ss_pred EeCCCccccccEEEEEEECCC---CCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCccc--cc
Confidence 9 4445556777787774221 2677776677777788999999999998 78999999999988765432211 12
Q ss_pred CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
........|.|.+++.+|+|.|+|.|.|..|....++.|.+..
T Consensus 239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp SSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred ceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence 2223346899999999999999999999999998888887754
No 81
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=240.32 Aligned_cols=263 Identities=16% Similarity=0.267 Sum_probs=193.7
Q ss_pred cceeee-------CcceeEEeecceeeeeecCeec--ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEcc
Q psy670 8 KSYTLE-------GEPTKQIEANFQMNMYHKGSLL--KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNK 78 (540)
Q Consensus 8 ~~c~~~-------g~p~~~~~~~~~~~W~k~~~~l--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~ 78 (540)
+.|.+. |.|. +.|.|+|+|..+ ....+.++.. .++ +|.|.+++.+|+|.|+|.+.|.
T Consensus 38 L~C~~~~~~~~~~~~p~------~~v~W~k~~~~~~~~~~~~~~~~~-~~~-------~L~i~~v~~~D~G~Y~C~~~n~ 103 (339)
T 3o4o_C 38 LRCPQVPYWLWASVSPR------INLTWHKNDSARTVPGEEETRMWA-QDG-------ALWLLPALQEDSGTYVCTTRNA 103 (339)
T ss_dssp EECTTSCSSCCSTTSSC------CBCCCEESSCCSCCSCCSSSCEEE-ETT-------EEEESSBCTTCCEEEECCEEET
T ss_pred EEeccccccccccCCCC------ceEEEEECCCCcccCccccccEEe-eCC-------eEEECCCCcccCEEEEEEEECC
Confidence 568887 7777 899999999874 3332344432 233 8999999999999999999999
Q ss_pred CcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEE-----EeecCCCceEEEeCCEeecCC-CceEEE
Q psy670 79 NGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECV-----LEASPMPDIIWYQGTKVIEDT-GRIKMS 152 (540)
Q Consensus 79 ~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~-----~~~~p~~~v~W~~~~~~~~~~-~~~~~~ 152 (540)
.|.....+.|.|...+... .+ ....+..+.+|+.+.|.|. +.+.|.+.+.|+++|..+... .++...
T Consensus 104 ~g~~~~~~~l~V~~~~~~~-~~------~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~ 176 (339)
T 3o4o_C 104 SYCDKMSIELRVFENTDAF-LP------FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV 176 (339)
T ss_dssp TEEEEEEEEEEEECSCGGG-HH------HHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEEC
T ss_pred cceEEEEEEEEEEcCCCcc-cc------ccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEc
Confidence 8888888888887654211 00 1122346789999999999 778899999999999988655 233222
Q ss_pred EeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEE
Q psy670 153 KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMK 228 (540)
Q Consensus 153 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~ 228 (540)
. .. ..|.|.+++.+|+|.|+|.+.|..+ .....+.|.|..... ..+|.+...+....+.+|+.+.|.
T Consensus 177 ~----~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~--~~~P~i~~~~~~~~v~~G~~v~L~ 247 (339)
T 3o4o_C 177 R----GT---THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE--ETIPVIISPLKTISASLGSRLTIP 247 (339)
T ss_dssp T----TS---SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC--CCCCEECCCSCCCCCCCCSCCCCC
T ss_pred C----Cc---ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC--CCCCEEecCCceeEeccCCCEEEE
Confidence 1 11 1799999999999999999999876 356677777775432 135677666677788899999999
Q ss_pred EEe---cccC-CCeEEEEeCCEEeecc---------CceEEEEecCCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCee
Q psy670 229 CKC---SAKP-RPEVKWFKADKLVKES---------SKIKIIVNEQDDTYEIICEITDPIGPDS-GTYRCNVKNEFGESN 294 (540)
Q Consensus 229 C~~---~~~p-~~~v~W~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~ 294 (540)
|.+ .+.| .+.+.|++++..+... ..... .........+.|.|.+++.+|. |.|+|.|.|..|...
T Consensus 248 C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~ 326 (339)
T 3o4o_C 248 CKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY-SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT 326 (339)
T ss_dssp CCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC-CCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEEC
T ss_pred EEEECCCCCCCCceEEEEECCeecccccccccceecceEEe-cccCceEEEEEEEEEEechhhcCccEEEEEEeccCceE
Confidence 999 8888 8899999998775422 11111 1112223344799999999997 999999999999877
Q ss_pred eeEEEEE
Q psy670 295 ANLNLNI 301 (540)
Q Consensus 295 ~~~~l~v 301 (540)
..+.+.+
T Consensus 327 ~~~~~~~ 333 (339)
T 3o4o_C 327 LRTTVKE 333 (339)
T ss_dssp CBCCCCC
T ss_pred EEEEhhH
Confidence 6655543
No 82
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.96 E-value=4.1e-28 Score=229.06 Aligned_cols=221 Identities=19% Similarity=0.241 Sum_probs=161.7
Q ss_pred EEEEEcccccCCCeeEEEEEEcc-CcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCc
Q psy670 56 AVLTIKNVQKSDSGEYKVIAKNK-NGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPD 133 (540)
Q Consensus 56 ~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~ 133 (540)
++|+|.+++.+|+|.|+|+|.+. .+..+..+.+.+...+....+. .........|+.+.|.|.+ .|.|.+.
T Consensus 74 ~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~l~C~~~~g~P~~~ 146 (308)
T 4fom_A 74 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIK-------GPDSLIDGGNETVAAICIAATGKPVAH 146 (308)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEE-------CSSCCCTTCSCEEEEEEEEEEEBSCCE
T ss_pred eEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeecccccccc-------ccceeEEcCCceEEEEEEecCCcCCce
Confidence 57999999999999999999886 4555666777776554222221 1123345678999999986 6889999
Q ss_pred eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeec
Q psy670 134 IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFI 211 (540)
Q Consensus 134 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~ 211 (540)
+.|++++..+..... ..........+.|.|.++..+|+|.|+|.+.|..+.. ...+.|.|.. +|.+.
T Consensus 147 i~W~~~~~~~~~~~~----~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~~~ 215 (308)
T 4fom_A 147 IDWEGDLGEMESTTT----SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY-------APEVS 215 (308)
T ss_dssp EEECCCSSBCCEEEE----ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE-------EEEEC
T ss_pred EEEEECCcccccccc----eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec-------CCeeE
Confidence 999999887643211 1112233344589999999999999999999987654 4455555553 45543
Q ss_pred cC-CceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 212 EK-PRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 212 ~~-~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
.. .....+..|+.+.|.|.+.+.|.+ .+.|++++..+...... ... ..|.|.+++.+|+|.|+|.|.|.
T Consensus 216 ~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~------~~~---~~l~i~~v~~~d~G~Y~C~A~N~ 286 (308)
T 4fom_A 216 VTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA------SDN---TLHFVHPLTFNYSGVYICKVTNS 286 (308)
T ss_dssp CBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBC------STT---EEECCSCCCSCCCSEEEEEEEET
T ss_pred EcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEE------cCC---eEEEECCCChhhCEEEEEEEEeC
Confidence 33 334456678999999999999888 69999998877543211 111 25678899999999999999999
Q ss_pred CCCeeeeEEEEEee
Q psy670 290 FGESNANLNLNIEA 303 (540)
Q Consensus 290 ~~~~~~~~~l~v~~ 303 (540)
.|..+.++.|.|..
T Consensus 287 ~G~~~~~~~l~V~~ 300 (308)
T 4fom_A 287 LGQRSDQKVIYISD 300 (308)
T ss_dssp TEEEEEEEECCEEC
T ss_pred CCcEEEEEEEEEEc
Confidence 99988888888876
No 83
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=228.89 Aligned_cols=264 Identities=14% Similarity=0.213 Sum_probs=188.1
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|++++|.|.+.+. +.|++++.. ..... .......|.|.+++.+|+|.|+|.+.+..+...
T Consensus 13 ~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~ 78 (292)
T 4dkd_C 13 ELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLY-----SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGS 78 (292)
T ss_dssp SCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEEC-----CBTTEEEEEESSCCGGGCSCEEECCCC----CC
T ss_pred eEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEe-----ccCceEEEEEcccccccCEEEEEEEccCCCCcc
Confidence 4578899999999999663 999976432 11111 111234899999999999999999999887777
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC--CeEEEEeC-CEEeeccCceEEEEecCCCeEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR--PEVKWFKA-DKLVKESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~ 267 (540)
..+.|.|...+ ..+...+....+.+|+.+.|.|.+.+ |. +.+.|+++ +..+........ ... .
T Consensus 79 ~~~~l~V~~~~------~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~--~~~-~---- 144 (292)
T 4dkd_C 79 AAIHLYVKDPA------RPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSF--SPW-H---- 144 (292)
T ss_dssp EEECCEECCSS------CCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEEC--CSS-S----
T ss_pred eEEEEEEcCcc------ccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccc--cCC-c----
Confidence 88888887521 12344455677889999999999987 43 78999997 444443333221 111 1
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC-CeEEE
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVW 345 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W 345 (540)
.|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|.... ..+|.+...+....+.+|+.+.|.|.+.+.|. +.+.|
T Consensus 145 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~---~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w 221 (292)
T 4dkd_C 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI---PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFL 221 (292)
T ss_dssp CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCC---CSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEEC
T ss_pred eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCC---CCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEE
Confidence 38999999999999999999877654 336777776522 12667777676666779999999999998765 57889
Q ss_pred EECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 346 FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
++++..+........ .........+|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 222 ~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 281 (292)
T 4dkd_C 222 QHNNTKLAIPQQSDF--HNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281 (292)
T ss_dssp CBSSCCCCCCBEEEE--ETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred eCCCcccccCcccee--ccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence 898876654333211 111112234899999999999999999999999999999998876
No 84
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=217.43 Aligned_cols=233 Identities=16% Similarity=0.262 Sum_probs=177.4
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..... .|.|.+++.+|+|.|+|.+
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~--------------~l~i~~~~~~d~G~Y~C~~ 67 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP--------------SYRITSASVNDSGEYRCQR 67 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSS--------------EEEESSCCGGGCEEEEEEE
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCC--------------eEEEecCCcccCeEEEEEE
Confidence 455566667778899999999999998877 8999999988754321 6899999999999999999
Q ss_pred EcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
.+..+.. .+.+.|.. ++.. ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+... ..
T Consensus 68 ~~~~~s~--~~~l~v~~-------~~~~-~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~--------~~ 129 (262)
T 3rjd_A 68 GLSGRSD--PIQLEIHR-------GWLL-LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------HW 129 (262)
T ss_dssp SSSCCCC--CEEEEEEC-------SSEE-EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------EE
T ss_pred ecCCccc--cEEEEEec-------cceE-ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc--------CC
Confidence 8865543 45556553 3333 33444567899999999999 67788899999999887421 11
Q ss_pred CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCccccc
Q psy670 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445 (540)
Q Consensus 366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (540)
+. .|.|.+++.+|+|.|+|.|.|..+.....+.|.|...
T Consensus 130 ~~----~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~------------------------------------- 168 (262)
T 3rjd_A 130 NS----NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL------------------------------------- 168 (262)
T ss_dssp CC----CEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS-------------------------------------
T ss_pred CC----eEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC-------------------------------------
Confidence 11 7999999999999999999999988888888888751
Q ss_pred ceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC-C----ceEEEecCeecCCCC-eEEE---EEEecCCeEEEEE
Q psy670 446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE-P----SVTWMKEKNTVKEDN-KHVV---HIEQVKDVSMNFE 516 (540)
Q Consensus 446 ~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~-~----~v~W~~~~~~l~~~~-~~~~---~~~~~~~g~y~c~ 516 (540)
..+|.+...+ ...+.+|+.++|.|.+.|.|. + .+.|++++..+.... ...+ .+...|.|.|+|.
T Consensus 169 ------~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 241 (262)
T 3rjd_A 169 ------FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCE 241 (262)
T ss_dssp ------SCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEE
T ss_pred ------CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEE
Confidence 1155555544 445778999999999999876 4 378999999886321 1122 4566789999999
Q ss_pred Eeee
Q psy670 517 LWLG 520 (540)
Q Consensus 517 ~~~~ 520 (540)
+...
T Consensus 242 a~n~ 245 (262)
T 3rjd_A 242 AATE 245 (262)
T ss_dssp EEET
T ss_pred EEcc
Confidence 9854
No 85
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.95 E-value=5.2e-27 Score=223.95 Aligned_cols=263 Identities=15% Similarity=0.169 Sum_probs=182.8
Q ss_pred cceeeeCcceeEEeecceeeeeecCee---------------c--ccCCceEEEEecCccceeeEEEEEEcccccCCCee
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSL---------------L--KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~---------------l--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 70 (540)
+.|.+.|.++ ..+.+.+.|+|++.. + ....++.+..... ...+|.|.+++.+|+|.
T Consensus 34 L~C~~~~~~~--~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~-----~~~~L~I~~v~~~D~G~ 106 (331)
T 3u83_A 34 LHCSFANPLP--SVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSF-----TDGTIRLSRLELEDEGV 106 (331)
T ss_dssp ECCBCSSCCS--SCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSS-----SBCCEEECSCCGGGCEE
T ss_pred EeeecCCCCC--CCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCC-----CCceEEEcccCcccCcE
Confidence 5688877621 012278999996521 1 1223333320011 13579999999999999
Q ss_pred EEEE-EEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCC---CeEEEEEE-EeecCCCceEEEeCCEeecC
Q psy670 71 YKVI-AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG---DLLVMECV-LEASPMPDIIWYQGTKVIED 145 (540)
Q Consensus 71 Y~C~-~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G---~~v~l~C~-~~~~p~~~v~W~~~~~~~~~ 145 (540)
|+|. +.+..+.....+.|.|...+. +.+. .......+.+| +.+.|.|. ..+.|.+.+.|++++.....
T Consensus 107 Y~C~~~~~~~~~~~~~~~l~V~~~p~-~~~~------~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~ 179 (331)
T 3u83_A 107 YICEFATFPTGNRESQLNLTVMAKPT-NWIE------GTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAE 179 (331)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEBCCE-EEEE------ECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEE
T ss_pred EEEEEEecCCCccEEEEEEEEecCCc-ceee------cCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccc
Confidence 9998 556567777788888877552 2111 01233456677 88999998 68899999999996322110
Q ss_pred CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCe
Q psy670 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTL 224 (540)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~ 224 (540)
. .......+.......|.|.++..+|+|.|+|.+.|..+.....+.|.|.. +|.+. ..+....+.+|+.
T Consensus 180 ~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-------~P~~~~~~~~~~~~~~g~~ 249 (331)
T 3u83_A 180 Y---QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-------EPEVTIEGFDGNWYLQRMD 249 (331)
T ss_dssp E---EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE-------EEEEEEECCCSCCBTTCCC
T ss_pred c---ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec-------CCeEEEecCCCceEeCCCe
Confidence 0 01111112222335799999999999999999999998888888888874 45544 3334455788999
Q ss_pred EEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEe-CCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 225 IQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT-DPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 225 ~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
+.|.|.+.+.|.+. +.|++++..+...... .. ..|.|. +++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 250 ~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~----~~------~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 319 (331)
T 3u83_A 250 VKLTCKADANPPATEYHWTTLNGSLPKGVEA----QN------RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319 (331)
T ss_dssp EEEEEEEEEESCCCEEEEEETTBSCCTTEEE----ET------TEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred EEEEEeCcCCCCCCEEEEEECCCccccccee----cC------cEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence 99999999999998 9999999887544211 11 278999 899999999999999999988888888776
Q ss_pred ec
Q psy670 303 AE 304 (540)
Q Consensus 303 ~~ 304 (540)
..
T Consensus 320 ~~ 321 (331)
T 3u83_A 320 EA 321 (331)
T ss_dssp C-
T ss_pred cc
Confidence 53
No 86
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.95 E-value=2.3e-27 Score=224.75 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=175.7
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-----
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI----- 186 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~----- 186 (540)
..+.+|++++|.|.+.+. .+.+.|+|+|..+....... .. ...|.|.+++.+|+|.|+|.+.+..
T Consensus 33 ~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~------~~---~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~ 102 (316)
T 3vh8_G 33 AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGR------IF---QESFNMSPVTTAHAGNYTCRGSHPHSPTGW 102 (316)
T ss_dssp SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHC------CB---SSCEEECSCCGGGCEEEEEEEBCSSSSSSB
T ss_pred CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCC------cc---eEEEEECCCCcccCeEEEEEEEcCCCCcce
Confidence 357799999999999776 67999999988753311000 00 1279999999999999999998632
Q ss_pred ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
+..+..+.|.|..... +|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+......... ......
T Consensus 103 ~~~s~~~~l~V~~~~~----~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~---~~~~~~ 173 (316)
T 3vh8_G 103 SAPSNPVVIMVTGNHR----KPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQI---HDGVSK 173 (316)
T ss_dssp CCCCCCEEEEEECSSC----CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEE---ETTEEE
T ss_pred ecCCCcEEEEEecCCC----CCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeee---cCCCce
Confidence 2234556777764221 45555444433 67899999999995 456689999999876432211110 112234
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCCCe-----eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFGES-----NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP 341 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~ 341 (540)
..|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+. .|.+
T Consensus 174 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~----~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~ 247 (316)
T 3vh8_G 174 ANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY----EKPSLSAQPGP-KVQAGESVTLSCSSR-SSYD 247 (316)
T ss_dssp EEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS----CCCEEEEESCS-CCCTTSCCEEEEEES-SCCS
T ss_pred EEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC----CCCeEEeCCCC-eecCCCcEEEEEECC-CCCc
Confidence 579999999999999999999987642 455666665422 25555554433 567899999999997 5778
Q ss_pred eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-----eEEEEEEEEEE
Q psy670 342 EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-----LNANLTLNIEM 407 (540)
Q Consensus 342 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~ 407 (540)
.+.|+++|..+...... ...........|.|.+++ |+|.|+|.|.|..+. .+..+.|.|..
T Consensus 248 ~~~W~k~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 313 (316)
T 3vh8_G 248 MYHLSREGGAHERRLPA---VRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG 313 (316)
T ss_dssp EEEEEETTSSCCEEEEC---EECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC----
T ss_pred EEEEEECCCcCCCceec---eeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeC
Confidence 99999999766432111 111222233589999998 999999999997653 35556666654
No 87
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.95 E-value=3e-26 Score=215.95 Aligned_cols=255 Identities=19% Similarity=0.283 Sum_probs=183.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+.++|.|.+.|.|.+.+.|++++..+... .+....... ...+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 13 ~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 88 (305)
T 2nzi_A 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK----GGYHQLIIASVTDDDATVYQVRATNQGGSV 88 (305)
T ss_dssp CEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEET----TTEEEEEESSCCGGGCSEEEEEEEETTEEE
T ss_pred ceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECC----CCEEEEEEccCChhhCeEEEEEEEcCCCCc
Confidence 457889999999999999999999999999988654 333332211 123489999999999999999999999988
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
...+.|.|...+.. ..|.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....+.+..... ...|
T Consensus 89 ~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~----~~~l 162 (305)
T 2nzi_A 89 SGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSL 162 (305)
T ss_dssp EEEEEEEECEEEEE--CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSS----EEEE
T ss_pred cceEEEEEecCCcc--CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCC----ceEE
Confidence 88888888752210 01222223345667789999999999999999999999998887666555443221 2478
Q ss_pred EEeC-CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEE--------------EEE
Q psy670 270 EITD-PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVM--------------ECK 334 (540)
Q Consensus 270 ~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l--------------~C~ 334 (540)
.|.+ +...|.|.|+|.|.|..|.....+.+.|...+. +|.... .....+..+.| .|.
T Consensus 163 ~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~----~p~~~~----~~~~~~~~v~l~w~~p~~~g~~~i~~y~ 234 (305)
T 2nzi_A 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD----PPRGVK----VSDVSRDSVNLTWTEPASDGGSKITNYI 234 (305)
T ss_dssp EETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCC----CCEEEE----EESCCSSCEEEEEECCSCCSBSCEEEEE
T ss_pred EEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCC----CCCCce----eeeccCCEEEEEEcCCccCCCCceeEEE
Confidence 9999 999999999999999999988888888876543 222111 11112344444 444
Q ss_pred EEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 335 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
+...+.+...|.+.+... .. .|.|.++...+.|.|+|.|.|..|....+
T Consensus 235 v~~~~~~~~~w~~~~~~~-------------~~----~~~i~~l~~~~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 235 VEKCATTAERWLRVGQAR-------------ET----RYTVINLFGKTSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp EEEEETTSCCEEEEEEES-------------SS----EEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred EEEecCCCCccEECcccc-------------Cc----eEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence 444444444554433221 11 78999999999999999999999976544
No 88
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.95 E-value=8.3e-27 Score=214.88 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=168.7
Q ss_pred ecCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEe---CCCCCCcE--EEEEEEEcC
Q psy670 218 PNESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT---DPIGPDSG--TYRCNVKNE 289 (540)
Q Consensus 218 ~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g--~y~C~~~~~ 289 (540)
.+.+|+.+.|.|.+.+ .|.+ .+.|++++..+.. .... ... .+.+. .++..|.| .|+|.+.|.
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~--~~~----~~~~~~~~~~~~~d~g~g~Y~C~a~n~ 83 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTY--GND----SFSAKASVSVTAEDEGTQRLTCAVILG 83 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEE--CSS----EEEEEEEEEECGGGCEEEEEEEEEEET
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEee--CCC----eEEEEeecccccccCCcceEEEEEecC
Confidence 5678999999999998 7776 9999999988754 1111 111 23333 33667777 599999999
Q ss_pred CCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCee
Q psy670 290 FGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369 (540)
Q Consensus 290 ~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 369 (540)
.+.....+.|.|...+ +|.+.. ....+.+|+.+.|.|.+. |.+.+.| +|..+.....
T Consensus 84 ~~~~~~~~~l~V~~~p-----~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~------------ 140 (265)
T 2oz4_A 84 NQSQETLQTVTIYSFP-----APNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGP------------ 140 (265)
T ss_dssp TEEEEEEEEEEEECCC-----CCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSS------------
T ss_pred CCCcEEEEEEEEeCCC-----Cceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCC------------
Confidence 8888778888887643 344443 344577899999999997 8899999 7776633221
Q ss_pred EEEEEEcCCCCCCCeeEEEEEEcCC-eeeE---EEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCccccc
Q psy670 370 HIRLEVKDPRKEDTGLYKCNIKNFH-GELN---ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445 (540)
Q Consensus 370 ~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~~---~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (540)
...|.|..+..+|+|.|+|.|.|.. |... ..+.|.|..
T Consensus 141 ~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~-------------------------------------- 182 (265)
T 2oz4_A 141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-------------------------------------- 182 (265)
T ss_dssp EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEE--------------------------------------
T ss_pred cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEe--------------------------------------
Confidence 2268899999999999999998644 5544 667777776
Q ss_pred ceeeeeeeeceeec--CCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeee
Q psy670 446 YSVLTLSVVPVIRE--VPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVE 523 (540)
Q Consensus 446 ~~~~~~~~~p~i~~--~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~ 523 (540)
+|.+.. .+....+.+|+.++|.|.+.|.|.|.++|+|+|..+..... ...+...|.|.|+|.+.+...+
T Consensus 183 --------~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~-~~~v~~~d~G~Y~C~a~N~~G~ 253 (265)
T 2oz4_A 183 --------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-SVTVTRDLEGTYLCRARSTQGE 253 (265)
T ss_dssp --------EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-CEECCGGGCEEEEEEEEETTEE
T ss_pred --------CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCc-EEEeehhhCeEEEEEEECCCCc
Confidence 555443 35677889999999999999999999999999984443332 2457789999999999985544
Q ss_pred e
Q psy670 524 K 524 (540)
Q Consensus 524 ~ 524 (540)
.
T Consensus 254 ~ 254 (265)
T 2oz4_A 254 V 254 (265)
T ss_dssp E
T ss_pred E
Confidence 3
No 89
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.95 E-value=1.3e-24 Score=212.39 Aligned_cols=340 Identities=19% Similarity=0.208 Sum_probs=216.3
Q ss_pred ccceeeeCcceeEEeecceeeeeec--Ceeccc-----CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccC
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHK--GSLLKM-----SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN 79 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~--~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~ 79 (540)
.+.|.+.|.|. +.|.|+|+ |..+.. ..++.+..... .++|.|.+++.+|+|.|+|.|.|..
T Consensus 19 ~l~C~~~g~p~------p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~ 86 (389)
T 2jll_A 19 TLVCDAEGEPI------PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG------SSSLHIKDVKLSDSGRYDCEAASRI 86 (389)
T ss_dssp EEEEEEECSSC------CEEEEEETTTTEEECC--CCSSSSEEEEECSS------EEEEEEESCCGGGCEEEEEEEECSS
T ss_pred EEEEEeecccC------CeEEEEeCCCCceeccCcCCCCCeEEEeccCC------cceEEEcccChhhCEEEEEEEEeCC
Confidence 36799999998 89999999 888765 35555543222 3799999999999999999999999
Q ss_pred cceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC--ceEEEEeecC
Q psy670 80 GEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG--RIKMSKKSIG 157 (540)
Q Consensus 80 ~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~ 157 (540)
|..+..+.|.|...| .+.. ......+.+|+.+.|.|.+.|.|.+.+.|+++|..+.... +......
T Consensus 87 g~~~~~~~l~V~~~P-~~~~--------~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~--- 154 (389)
T 2jll_A 87 GGHQKSMYLDIEYAP-KFIS--------NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST--- 154 (389)
T ss_dssp CEEEEEEEEEEEEEE-EECC--------SCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC---
T ss_pred CCcceEEEEEEEeCC-EEec--------CcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc---
Confidence 998888999888654 2211 1122357899999999999999999999999999987654 3333221
Q ss_pred cceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc----
Q psy670 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA---- 233 (540)
Q Consensus 158 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~---- 233 (540)
.....|.|.++..+|+|.|+|.+.|..|.....+.+.+...+. +|... ......+..+.|.|....
T Consensus 155 --~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~----~P~~~----~~~~~~~~~~~l~w~~p~~~~g 224 (389)
T 2jll_A 155 --GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS----SPYGV----KIIELSQTTAKVSFNKPDSHGG 224 (389)
T ss_dssp --SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC----CCEEE----EEEEECSSCEEEEEECCSCCTT
T ss_pred --CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC----CCcce----EEeeccCCEEEEEEeCCCCCCC
Confidence 1123899999999999999999999999988888877754322 22110 111223567899998532
Q ss_pred cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCC
Q psy670 234 KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311 (540)
Q Consensus 234 ~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~ 311 (540)
.|.. .+.|.+++.... ........ ...+.|.++...+.+.|+|.|.|..|....+..+.+...+.....+
T Consensus 225 ~pi~~y~v~~~~~~~~~~-----~~~~~~~~---~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~ 296 (389)
T 2jll_A 225 VPIHHYQVDVKEVASEIW-----KIVRSHGV---QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSP 296 (389)
T ss_dssp SCEEEEEEEEEETTCSCC-----EEEECSTT---CSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCC
T ss_pred cceEEEEEEEEECCCccc-----EEeeccCC---cceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCC
Confidence 2222 477887664211 11111111 1268899999999999999999998865443333333222111113
Q ss_pred CeEEeCCceEEeeCCCeEEEEEEEEcc---CCCe--EEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670 312 PTFIEKPKIRSEQGGKLVVMECKVKAK---PMPE--IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 386 (540)
|.+. .....+..+.|....... +... |.|...+..- ... .... .+.. ..+.|..+.......|
T Consensus 297 p~~~-----~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~--~~~-~~~~--~~~~--~~~~i~~L~~~t~Y~~ 364 (389)
T 2jll_A 297 PSIH-----GQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKED--QWL-EKKV--QGNK--DHIILEHLQWTMGYEV 364 (389)
T ss_dssp CCEE-----EEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-------CCB-CCEE--CTTC--CEEEECSCCTTCEEEE
T ss_pred Cccc-----cccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCc--cee-Eeec--cCCc--ceEEeCCcCCCCEEEE
Confidence 3221 112356677777763211 1122 2332211100 000 0011 1111 1577888887777788
Q ss_pred EEEEEcCCeeeEEE
Q psy670 387 KCNIKNFHGELNAN 400 (540)
Q Consensus 387 ~C~a~n~~g~~~~~ 400 (540)
+..|.|..|....+
T Consensus 365 ~V~A~n~~G~s~~s 378 (389)
T 2jll_A 365 QITAANRLGYSEPT 378 (389)
T ss_dssp EEEEEC-CCBCCCE
T ss_pred EEEEEcCCcCCCce
Confidence 89999998875443
No 90
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.95 E-value=3.6e-27 Score=223.94 Aligned_cols=272 Identities=13% Similarity=0.159 Sum_probs=171.1
Q ss_pred CeEEEEEEEeec-C-CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 118 DLLVMECVLEAS-P-MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 118 ~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
+.+.|.|.+.+. | .+.|.|+|+|..+.............+.....+.|.|.+...+|+|.|+|.|.|..+.....+.+
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 104 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK 104 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence 699999999876 4 46899999999886543211111112222334578998888889999999999987655444332
Q ss_pred EEecCcCCCCCCCe-eccCCceeecCCCCeEEEEEEeccc-CCC---eEEEEeCC-EEeeccCceEEEEecCCCeEEEEE
Q psy670 196 NFQGGENGAGFAPS-FIEKPRIIPNESGTLIQMKCKCSAK-PRP---EVKWFKAD-KLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 196 ~v~~~~~~~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~-p~~---~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
.+.. ....|. +...+....+.+|+.+.|.|.+.+. |.+ .|.|++++ ..+..................+.|
T Consensus 105 ~~~~----~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L 180 (323)
T 2wqr_A 105 CADS----NPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTL 180 (323)
T ss_dssp CCCS----SGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEE
T ss_pred CCCC----CCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEE
Confidence 1111 011232 2344445557789999999999885 555 89999975 433222111110111111234579
Q ss_pred EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy670 270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFH 347 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~ 347 (540)
.|.+++.+|+|.|+|.+.|..+.... .+.|..... ...+|.+...+.......|+.++|.|.+.| .|.+ .|.|++
T Consensus 181 ~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~-~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k 257 (323)
T 2wqr_A 181 PVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSG-PRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLH 257 (323)
T ss_dssp ECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCS-CCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCC-CCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEE
Confidence 99999999999999999997643322 333322100 112555443222212223999999999998 4543 899999
Q ss_pred CCEEccCCCceEE--EEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 348 EGKELQQTDRISW--NVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 348 ~~~~~~~~~~~~~--~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+|..+........ ....++. ...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 258 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 258 NEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 9998865421110 0111221 23457999999999999999999998876
No 91
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.94 E-value=7.8e-27 Score=221.64 Aligned_cols=272 Identities=12% Similarity=0.111 Sum_probs=168.0
Q ss_pred ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~ 86 (540)
.++|.+.|.++ +.+.|+|+|||..+..+.........++ .....+.|.|.+.+.+|+|.|+|+|.|..+.....+
T Consensus 28 ~L~C~~~g~~P----~~~~v~W~k~g~~l~~~~~~~~~~~~~g-~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 102 (323)
T 2wqr_A 28 QLLCLVSGYTP----GTIQITWLEDGQVMDVDLSTASTTQEGE-LASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST 102 (323)
T ss_dssp EEEEEEEEECC----CCEEEEEEETTEECCGGGEEEEEEEETT-EEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred EEEEEEeCeEC----CCeEEEEEECCEEcccceecCCcCccCC-cEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceee
Confidence 47899998632 1279999999999875533222222233 444567899999999999999999999876544332
Q ss_pred EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC---ceEEEeCC-EeecCCCceEEEEeecCcceE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP---DIIWYQGT-KVIEDTGRIKMSKKSIGKDTY 161 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~---~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (540)
.+.+......+.+. ..+.....+.+|+.+.|.|.+.+. |.+ .|.|+|++ ..+........ ....+....
T Consensus 103 ~~~~~~~~~~p~v~-----~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~ 176 (323)
T 2wqr_A 103 KKCADSNPRGVSAY-----LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTV 176 (323)
T ss_dssp CCCCCSSGGGCEEE-----ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEE
T ss_pred ecCCCCCCCCCEEE-----EcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEE
Confidence 21111000011110 011122357799999999999875 555 89999965 44432221111 111112223
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eE
Q psy670 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EV 239 (540)
Q Consensus 162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v 239 (540)
.+.|.|.+++.+|+|.|+|.+.|..+.......+.+.. ....+|.+...+.......|+.++|.|.+.+ .|.+ .|
T Consensus 177 ~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v 253 (323)
T 2wqr_A 177 TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTS---GPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISV 253 (323)
T ss_dssp EEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCC---SCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEE
T ss_pred EEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccC---CCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEE
Confidence 45899999999999999999999864332233322110 0112555433222222234999999999988 5543 89
Q ss_pred EEEeCCEEeeccCceEE-EEecC--CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 240 KWFKADKLVKESSKIKI-IVNEQ--DDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 240 ~W~~~~~~l~~~~~~~~-~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.|+++|..+........ ..... .....+.|.|..+..+|+|.|+|.|.|....
T Consensus 254 ~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 254 QWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 99999998865421110 01111 2233457999999999999999999998765
No 92
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.94 E-value=7.5e-27 Score=223.78 Aligned_cols=279 Identities=14% Similarity=0.221 Sum_probs=173.5
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|+ +..+. ...++.+..+. .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~ 85 (344)
T 1za6_B 9 AEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADT---SASTAYVELSS 85 (344)
T ss_dssp CEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEET---TTTEEEEEECS
T ss_pred CeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEec---CCCEEEEEECC
Confidence 45688999999999998763 578999996 33221 12344433221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEE
Q psy670 170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKL 247 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~ 247 (540)
++.+|+|.|+|.+.+..+.....+.|.|..... .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..
T Consensus 86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~ 162 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT 162 (344)
T ss_dssp CCGGGCEEEEEEETTTTCEECCCEEEEECSSCC---BCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred CCcccCEEEEEEEecCcceecCcEEEEEecCCC---CCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence 999999999999998654444556777763211 24444433333446789999999999985 65 79999999876
Q ss_pred eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec-----------------cCCCCC
Q psy670 248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE-----------------AEPEGD 310 (540)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~-----------------~~~~~~ 310 (540)
+...........+......+.|.|.++..+| |.|+|.|.|..+.......+.+... ......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~ 241 (344)
T 1za6_B 163 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPR 241 (344)
T ss_dssp TTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCB
T ss_pred CceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCc
Confidence 4211100011111112233479999988878 9999999998775433332221100 000122
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~ 387 (540)
+|.+...+.......|+.++|.|.+.|. | .+.|.|+++|..+............++. ...+.|.|.....+|+|.|+
T Consensus 242 ~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Yt 321 (344)
T 1za6_B 242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS 321 (344)
T ss_dssp CCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEE
T ss_pred CCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEE
Confidence 4554433221112346669999999985 4 3589999999887543221111122222 22346778777777899999
Q ss_pred EEEEcCCee
Q psy670 388 CNIKNFHGE 396 (540)
Q Consensus 388 C~a~n~~g~ 396 (540)
|.|.|....
T Consensus 322 C~a~~~~l~ 330 (344)
T 1za6_B 322 CSVMHEALH 330 (344)
T ss_dssp EEEECTTST
T ss_pred EEEEcCCCC
Confidence 999997653
No 93
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.94 E-value=8.4e-24 Score=206.52 Aligned_cols=263 Identities=19% Similarity=0.313 Sum_probs=190.7
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEeecC-----CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIED-----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
...+.+|+.+.|.|.+.|.|.+.+.|+|+ |..+.. ..++.+... .....|.|.+++.+|+|.|+|.+.
T Consensus 9 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~ 83 (389)
T 2jll_A 9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-----HGSSSLHIKDVKLSDSGRYDCEAA 83 (389)
T ss_dssp CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC-----SSEEEEEEESCCGGGCEEEEEEEE
T ss_pred ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc-----CCcceEEEcccChhhCEEEEEEEE
Confidence 34567899999999999999999999999 888754 334443321 123489999999999999999999
Q ss_pred cCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC--ceEEEEecC
Q psy670 184 NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS--KIKIIVNEQ 261 (540)
Q Consensus 184 ~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~~ 261 (540)
|..|.....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...+...
T Consensus 84 n~~g~~~~~~~l~V~~-------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~-- 154 (389)
T 2jll_A 84 SRIGGHQKSMYLDIEY-------APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST-- 154 (389)
T ss_dssp CSSCEEEEEEEEEEEE-------EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC--
T ss_pred eCCCCcceEEEEEEEe-------CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc--
Confidence 9999988889999885 6667666666677899999999999999999999999999887654 3333221
Q ss_pred CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc----
Q psy670 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA---- 337 (540)
Q Consensus 262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~---- 337 (540)
. ....|.|.++..+|.|.|+|.|.|..|.......+.+...+. +|..+. .....+..+.|.|....
T Consensus 155 ~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~----~P~~~~----~~~~~~~~~~l~w~~p~~~~g 224 (389)
T 2jll_A 155 G--RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS----SPYGVK----IIELSQTTAKVSFNKPDSHGG 224 (389)
T ss_dssp S--SCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC----CCEEEE----EEEECSSCEEEEEECCSCCTT
T ss_pred C--CEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC----CCcceE----EeeccCCEEEEEEeCCCCCCC
Confidence 1 124799999999999999999999999877777776644321 221111 12234677889997422
Q ss_pred cCCC--eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 338 KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 338 ~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
.|.. .+.|.+++.... . .....+. ...+.|.++...+.|.|+|.|.|..|....+..+.+
T Consensus 225 ~pi~~y~v~~~~~~~~~~-----~-~~~~~~~--~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~ 286 (389)
T 2jll_A 225 VPIHHYQVDVKEVASEIW-----K-IVRSHGV--QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF 286 (389)
T ss_dssp SCEEEEEEEEEETTCSCC-----E-EEECSTT--CSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred cceEEEEEEEEECCCccc-----E-EeeccCC--cceEEECCccCCCEEEEEEEEEcCCccCCCCcceEE
Confidence 2322 467877654211 1 1111111 117899999999999999999999987654444433
No 94
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=217.76 Aligned_cols=246 Identities=13% Similarity=0.159 Sum_probs=172.7
Q ss_pred eeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCC
Q psy670 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAP 105 (540)
Q Consensus 26 ~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~ 105 (540)
+.|++++.. +..+.... ..++|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..++.....
T Consensus 32 v~W~~~~~~-----~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~------ 94 (292)
T 4dkd_C 32 VEWDGPPSP-----HWTLYSDG------SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNV------ 94 (292)
T ss_dssp CCBCCCCCS-----SCEECCBT------TEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEE------
T ss_pred eEEccCCCC-----ceEEeccC------ceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccc------
Confidence 899976642 22222111 2369999999999999999999998887777888888765421111
Q ss_pred CCCCCCccccCCCeEEEEEEEeecCC--CceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670 106 RFPKKPTIHQDGDLLVMECVLEASPM--PDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182 (540)
Q Consensus 106 ~~~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 182 (540)
......+.+|+.+.|.|.+.+ |. +.+.|+++ +..+....+...... . .|.|.+++.+|+|.|+|.+
T Consensus 95 --~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~-----~---~L~i~~~~~~d~G~Y~C~a 163 (292)
T 4dkd_C 95 --LAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPW-----H---GFTIHRAKFIQSQDYQCSA 163 (292)
T ss_dssp --SCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSS-----S---CCEETTCCGGGCSEEEEEE
T ss_pred --cCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCC-----c---eEEECCCCHHHCeEEEEEE
Confidence 123456889999999999976 44 68999997 555554444333211 1 4999999999999999999
Q ss_pred EcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC-CeEEEEeCCEEeeccCceEEEEec
Q psy670 183 CNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKLVKESSKIKIIVNE 260 (540)
Q Consensus 183 ~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~ 260 (540)
.+..+.. +..+.|.|..... .+|.+...+....+.+|+.+.|.|.+.+.|. ..+.|++++..+......... .
T Consensus 164 ~n~~~~~~s~~~~l~V~~~~~---~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~ 238 (292)
T 4dkd_C 164 LMGGRKVMSISIRLKVQKVIP---GPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH--N 238 (292)
T ss_dssp CSTTSCEECCCEEEEEECCCC---SSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEE--T
T ss_pred EeCCCceeEEEEEEEEeCCCC---CCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceec--c
Confidence 9887754 4467777774221 2666766666666779999999999988654 578999988766543332211 1
Q ss_pred CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~ 304 (540)
........|.|.+++.+|+|.|+|.|.|..|....++.|.|...
T Consensus 239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 239 NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp TEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred ceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence 11223358999999999999999999999999888888877653
No 95
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.94 E-value=4.9e-25 Score=207.68 Aligned_cols=266 Identities=18% Similarity=0.231 Sum_probs=193.0
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... +...... ..+ ...|.|.+++.+|+|.|+|.
T Consensus 4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~--~~~L~i~~v~~~d~G~Y~C~ 80 (305)
T 2nzi_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF-KGG--YHQLIIASVTDDDATVYQVR 80 (305)
T ss_dssp CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE-TTT--EEEEEESSCCGGGCSEEEEE
T ss_pred CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEEC-CCC--EEEEEEccCChhhCeEEEEE
Confidence 7788888888899999999999999999999999999999887543 3333222 122 24799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
+.|..|.....+.|.|...+.. ..|.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.....
T Consensus 81 a~n~~g~~~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-- 156 (305)
T 2nzi_A 81 ATNQGGSVSGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT-- 156 (305)
T ss_dssp EEETTEEEEEEEEEEECEEEEE--CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC--
T ss_pred EEcCCCCccceEEEEEecCCcc--CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc--
Confidence 9999888777778887653211 112222223456788999999999999999999999999998877666544322
Q ss_pred CCeeEEEEEEcC-CCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccc
Q psy670 366 GDKYHIRLEVKD-PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444 (540)
Q Consensus 366 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (540)
+. ...|.|.+ +..+|+|.|+|.|.|..|....++.|.|..+|....
T Consensus 157 ~~--~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~------------------------------- 203 (305)
T 2nzi_A 157 RS--FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPR------------------------------- 203 (305)
T ss_dssp SS--EEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCE-------------------------------
T ss_pred CC--ceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCC-------------------------------
Confidence 11 23899999 999999999999999999999888888876321100
Q ss_pred cceeeeeeeeceee-cCCcEEEe------cCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE-EEEecCCeEEEEE
Q psy670 445 KYSVLTLSVVPVIR-EVPKVVTI------SKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-HIEQVKDVSMNFE 516 (540)
Q Consensus 445 ~~~~~~~~~~p~i~-~~~~~~~~------~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~-~~~~~~~g~y~c~ 516 (540)
.+.+. .......+ ..|....+.|.+.+.+.+...|.+.+... .....+ .+...+.|.|+|.
T Consensus 204 ---------~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~--~~~~~i~~l~~~~~y~~~~~ 272 (305)
T 2nzi_A 204 ---------GVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR--ETRYTVINLFGKTSYQFRVI 272 (305)
T ss_dssp ---------EEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEES--SSEEEECSCCSSCEEEEEEE
T ss_pred ---------CceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECcccc--CceEEecCCCCCCeEEEEEE
Confidence 00111 01111111 23566778899999888899999987654 222222 4566789999999
Q ss_pred Eeeeeee
Q psy670 517 LWLGIVE 523 (540)
Q Consensus 517 ~~~~~~~ 523 (540)
+....-.
T Consensus 273 A~N~~G~ 279 (305)
T 2nzi_A 273 AENKFGL 279 (305)
T ss_dssp EEETTEE
T ss_pred EEeCCcc
Confidence 9865433
No 96
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=209.57 Aligned_cols=244 Identities=14% Similarity=0.115 Sum_probs=162.1
Q ss_pred eeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc---eeeeEEEEEeecCCccccCCC
Q psy670 26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE---GSSTVNLNFSEEDGKLKVPGG 102 (540)
Q Consensus 26 ~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~i~~~ 102 (540)
++|+|++..+.. +.....++ .+.++|.|.+++.+|+|.|+|.+.|..|. ...++.|.|..+. .+
T Consensus 28 v~W~~~~~~~~~----~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~-~~----- 94 (289)
T 3mjg_X 28 VVWERMSQEPPQ----EMAKAQDG---TFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPT-VG----- 94 (289)
T ss_dssp CEEEBTTBCCSE----EEEECTTS---CEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTT-CC-----
T ss_pred EEEECCCCCccc----ceeccCCC---ceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCC-cC-----
Confidence 899999998731 22222222 13579999999999999999999998876 2334444443221 11
Q ss_pred CCCCCCCCC----ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670 103 KAPRFPKKP----TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY 178 (540)
Q Consensus 103 ~~~~~~~~~----~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 178 (540)
.++..+ ..+.+|+.+.|.|.+. .|.+.+.|++++......... . ... .+. ...|+|.|
T Consensus 95 ---~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~--~----~~~----~~~----~~~d~G~Y 156 (289)
T 3mjg_X 95 ---FLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY--D----HQR----GFS----GIFEDRSY 156 (289)
T ss_dssp ---BCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE--E----TTT----EEE----ECCCSSEE
T ss_pred ---cccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee--c----CCc----Cee----eeccCcEE
Confidence 111111 4578999999999997 778899999865222111111 0 011 111 25699999
Q ss_pred EEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEE
Q psy670 179 RCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKII 257 (540)
Q Consensus 179 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~ 257 (540)
+|.+.+..+.. +..+.|.|... .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++............
T Consensus 157 ~C~a~n~~~~~~s~~~~l~v~~~-----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~ 231 (289)
T 3mjg_X 157 ICKTTIGDREVDSDAYYVYRLQV-----SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTD 231 (289)
T ss_dssp EEEEEETTEEEECCCEEEEECCC-----CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEE
T ss_pred EEEEEeCCceeeeeeEEEEecCC-----CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccccccc
Confidence 99999776654 33456666542 1444544444566788999999999999999999999877654332221111
Q ss_pred Eec-CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670 258 VNE-QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 258 ~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~ 305 (540)
... ........|.|.+++.+|+|.|+|.|.|..|....+..|.|...+
T Consensus 232 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 232 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280 (289)
T ss_dssp ESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred ccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence 111 124455689999999999999999999999999999999998754
No 97
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.93 E-value=6.6e-26 Score=214.64 Aligned_cols=249 Identities=10% Similarity=0.167 Sum_probs=169.5
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+++|..+...... ......|.|.+++.+|+|.|+|.+
T Consensus 24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~--------~~~~~~L~I~~v~~~D~G~Y~C~a 93 (316)
T 3vh8_G 24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHG--------RIFQESFNMSPVTTAHAGNYTCRG 93 (316)
T ss_dssp CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHH--------CCBSSCEEECSCCGGGCEEEEEEE
T ss_pred CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecC--------CcceEEEEECCCCcccCeEEEEEE
Confidence 666666665 457799999999999887 6789999999875432110 000126899999999999999999
Q ss_pred EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670 287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361 (540)
Q Consensus 287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 361 (540)
.+..+ ..+..+.|.|.... .+|.+...+... +.+|+.++|.|.+. .+.+.+.|+++|..+........
T Consensus 94 ~~~~~~~~~~~~s~~~~l~V~~~~----~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~- 166 (316)
T 3vh8_G 94 SHPHSPTGWSAPSNPVVIMVTGNH----RKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQ- 166 (316)
T ss_dssp BCSSSSSSBCCCCCCEEEEEECSS----CCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECE-
T ss_pred EcCCCCcceecCCCcEEEEEecCC----CCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeee-
Confidence 86432 23455667765532 245666555544 78999999999994 56678999999987643221110
Q ss_pred EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-----EEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccc
Q psy670 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-----NANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRD 436 (540)
Q Consensus 362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (540)
.........|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 167 --~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~----------------------------- 215 (316)
T 3vh8_G 167 --IHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG----------------------------- 215 (316)
T ss_dssp --EETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC-----------------------------
T ss_pred --ecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC-----------------------------
Confidence 1112233489999999999999999999987741 4455566543
Q ss_pred cccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCC--------C--eEEE---
Q psy670 437 FSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED--------N--KHVV--- 503 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~--------~--~~~~--- 503 (540)
...+|.+...+.. .+.+|+.++|.|.+. .|.+.+.|+|+|..+... . ...+
T Consensus 216 --------------~~~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~ 279 (316)
T 3vh8_G 216 --------------PYEKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLG 279 (316)
T ss_dssp --------------SSCCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC
T ss_pred --------------CCCCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcC
Confidence 1125555554432 568899999999996 577899999999876421 1 1222
Q ss_pred EEEecCCeEEEEEEeeee
Q psy670 504 HIEQVKDVSMNFELWLGI 521 (540)
Q Consensus 504 ~~~~~~~g~y~c~~~~~~ 521 (540)
.+. |.|.|+|.+....
T Consensus 280 ~v~--D~G~Y~C~a~n~~ 295 (316)
T 3vh8_G 280 PAT--HGGTYRCFGSFRH 295 (316)
T ss_dssp -------CEEEEEEEBTT
T ss_pred CcC--CCEEEEEEeecCC
Confidence 233 9999999998743
No 98
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.92 E-value=6.2e-23 Score=182.07 Aligned_cols=191 Identities=25% Similarity=0.479 Sum_probs=155.6
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEee-ccCceEEEEecCCCeEEEEEEEeCCCC-CCcEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVK-ESSKIKIIVNEQDDTYEIICEITDPIG-PDSGTYR 283 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~ 283 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++...... .+ ...|.|.+++. +|+|.|+
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~--~~~L~i~~v~~~~d~G~Y~ 81 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP-GG--ISILRIEPVRAGRDDAPYE 81 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEET-TT--EEEEEESSCCTTTTCSEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcC-CC--eEEEEEEecCCCCcCceEE
Confidence 37888888888889999999999999999999999999999887 33444433322 22 24799999999 9999999
Q ss_pred EEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC-ceEEE
Q psy670 284 CNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWN 361 (540)
Q Consensus 284 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~ 361 (540)
|.+.|..|. ....+.|.|...+......|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .+..
T Consensus 82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~- 160 (212)
T 2yd1_A 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL- 160 (212)
T ss_dssp EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE-
T ss_pred EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc-
Confidence 999999888 6777888887654433335778877877888899999999999999999999999999987643 3221
Q ss_pred EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE-EEEEEEE
Q psy670 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN-LTLNIEM 407 (540)
Q Consensus 362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~ 407 (540)
.++ .|.|.+++.+|+|.|+|.|.|..|..... +.|.|..
T Consensus 161 --~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 161 --KDG-----FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200 (212)
T ss_dssp --ETT-----EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred --cCC-----eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence 122 79999999999999999999999988654 7888887
No 99
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.92 E-value=1.1e-23 Score=184.24 Aligned_cols=188 Identities=23% Similarity=0.449 Sum_probs=152.2
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC--ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS--KIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ........ + ...|.|.+++.+|+|.|+|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~--~~~L~i~~~~~~d~G~Y~C 80 (194)
T 2a38_A 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD--G--RAKLTIPAVTKANSGRYSL 80 (194)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEET--T--EEEEEESSCCGGGCEEEEE
T ss_pred CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCC--C--EEEEEECCCCcccCEEEEE
Confidence 6677777777888899999999999999999999999998886653 33332221 1 2479999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 285 NVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
.+.+..+.......+.|.... .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+.....+... .
T Consensus 81 ~~~n~~~~~~~~~~l~v~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--~ 154 (194)
T 2a38_A 81 KATNGSGQATSTAELLVKAET----APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--Q 154 (194)
T ss_dssp EEEETTEEEEEEEEEEEECCC----EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEE--E
T ss_pred EEEcCCceEeEEEEEEEccCC----CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEE--E
Confidence 999988877777777776421 1566676777778899999999999999999999999999999877665443 2
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
++. ..+|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 155 ~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 155 EGD--LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp ETT--EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cCC--EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 333 2379999999999999999999999999888888773
No 100
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.92 E-value=1.7e-23 Score=183.47 Aligned_cols=191 Identities=22% Similarity=0.335 Sum_probs=150.6
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ++..... ..+ ...|.|.+++.+|+|.|+|.
T Consensus 4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~--~~~L~i~~~~~~d~G~Y~C~ 80 (197)
T 2j8h_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF-KGG--YHQLIIASVTDDDATVYQVR 80 (197)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE-TTT--EEEEEECSCCGGGCSEEEEE
T ss_pred CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEc-CCC--EEEEEECcCCHHhCEEEEEE
Confidence 7778777888889999999999999999999999999999887543 3333222 222 24799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
+.+..+.....+.|.|...+.. ..+.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.....
T Consensus 81 ~~n~~g~~~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-- 156 (197)
T 2j8h_A 81 ATNQGGSVSGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT-- 156 (197)
T ss_dssp EEETTEEEEEEEEEEEEEEEEE--CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC--
T ss_pred EEECCCceeEEEEEEEcCCCcC--CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc--
Confidence 9999888777778887663221 122222233456688899999999999999999999999999887666554322
Q ss_pred CCeeEEEEEEcC-CCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 366 GDKYHIRLEVKD-PRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 366 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+. ...|.|.+ +..+|+|.|+|.|.|..|....++.|.|.
T Consensus 157 ~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 157 RS--FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp SS--EEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CC--ceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 11 23899999 99999999999999999999988888875
No 101
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.92 E-value=4.1e-23 Score=183.22 Aligned_cols=196 Identities=22% Similarity=0.372 Sum_probs=150.7
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCC-CCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP-IGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~ 285 (540)
+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............. ...|.|.++ +.+|+|.|+|.
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~~d~G~Y~C~ 82 (212)
T 2yd6_A 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS---GSVLRIQPLRTPRDEAIYECV 82 (212)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGT---EEEEEECSCCTTTTCEEEEEE
T ss_pred CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCC---ceEEEEeccCCCCCCeEEEEE
Confidence 67777778888889999999999999999999999999998876543333222111 247999999 59999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc-eEEEEEe
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR-ISWNVTL 364 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~ 364 (540)
+.|..|.....+.|.|...+......|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..... .+.....
T Consensus 83 a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~ 162 (212)
T 2yd6_A 83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR 162 (212)
T ss_dssp EEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE
T ss_pred EEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe
Confidence 999988877788888876543333357777777778888999999999999999999999999998876421 1222222
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEM 407 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~ 407 (540)
.+. ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 163 ~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~ 204 (212)
T 2yd6_A 163 SES--IGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204 (212)
T ss_dssp ETT--EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred cCC--eEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence 221 3489999999999999999999999986 4456777765
No 102
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.91 E-value=1.3e-24 Score=208.15 Aligned_cols=280 Identities=11% Similarity=0.174 Sum_probs=161.9
Q ss_pred CceeecCCCCeEEEEEEeccc--CCCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAK--PRPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+....+.+|+.+.|.|.+.+. +.+.+.|+++ +..+. ...++.+.... ......|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~ 84 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADT--SASTAYVELS 84 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEET--TTTEEEEEEC
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEec--CCCEEEEEEC
Confidence 345677899999999999876 3678999986 33221 01233332221 1123479999
Q ss_pred CCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCE
Q psy670 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGK 350 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~ 350 (540)
+++.+|+|.|+|.+.+..+.......|.|...+ ..+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+++|.
T Consensus 85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~ 161 (344)
T 1za6_B 85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL 161 (344)
T ss_dssp SCCGGGCEEEEEEETTTTCEECCCEEEEECSSC---CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTB
T ss_pred CCCcccCEEEEEEEecCcceecCcEEEEEecCC---CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCc
Confidence 999999999999999865444455667776321 124554433322335689999999999986 64 6999999987
Q ss_pred EccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeee
Q psy670 351 ELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 429 (540)
.+....... ....++. ...+.|.|..+..+| |.|+|.|.|..+.......+.+...- ++...+.
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~-----------~~~~~~~-- 226 (344)
T 1za6_B 162 TSGVHTFPA-VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCD-----------KTHTCPP-- 226 (344)
T ss_dssp CTTEEECCC-EECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC---------------------
T ss_pred cCceeECCC-eECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccc-----------cccccCC--
Confidence 642110000 0011111 123479999988878 99999999988765433333211000 0000000
Q ss_pred ecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC--CceEEEecCeecCCC---------
Q psy670 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKED--------- 498 (540)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~--------- 498 (540)
+...+... .......+|.+...+......+|+.++|.|.+.|.++ +.++|+|||..+...
T Consensus 227 -------~~~~~~l~--~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~ 297 (344)
T 1za6_B 227 -------CGGGSSGG--GSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS 297 (344)
T ss_dssp ---------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECT
T ss_pred -------CCCCcccc--ccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECC
Confidence 00000000 0000112555443221112335777999999999644 489999999877532
Q ss_pred -CeEE----EEEEec---CCeEEEEEEeeeee
Q psy670 499 -NKHV----VHIEQV---KDVSMNFELWLGIV 522 (540)
Q Consensus 499 -~~~~----~~~~~~---~~g~y~c~~~~~~~ 522 (540)
..+. +.+... +.|.|+|.+....+
T Consensus 298 ~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l 329 (344)
T 1za6_B 298 DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 329 (344)
T ss_dssp TSCEEEEEEEEECHHHHHTTCEEEEEEECTTS
T ss_pred CCcEEEEEEEEEChHHccCCCeEEEEEEcCCC
Confidence 1111 223332 38999999986544
No 103
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.91 E-value=2e-22 Score=175.41 Aligned_cols=178 Identities=21% Similarity=0.366 Sum_probs=141.8
Q ss_pred CCeeccCCceeecCC-CCeEEEEEEecccCC--CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670 207 APSFIEKPRIIPNES-GTLIQMKCKCSAKPR--PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~-g~~~~l~C~~~~~p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 283 (540)
+|.+...+ ...+.+ |+.+.|.|.+.+.|. +.+.|++++..+....... ....|.|.+++.+|+|.|+
T Consensus 3 ~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~ 72 (190)
T 2wv3_A 3 EPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---------SNMEYRINKPRAEDSGEYH 72 (190)
T ss_dssp CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---------SEEEEEESSCCGGGCEEEE
T ss_pred CCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---------ccEEEEEecCCcccCEEEE
Confidence 55665533 444555 999999999998776 7899999999886543321 2258999999999999999
Q ss_pred EEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEE--CCEEcc---CCCce
Q psy670 284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH--EGKELQ---QTDRI 358 (540)
Q Consensus 284 C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~--~~~~~~---~~~~~ 358 (540)
|.+.+. +.....+.|.|.. +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++ +|..+. ...++
T Consensus 73 C~~~n~-~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~ 144 (190)
T 2wv3_A 73 CVYHFV-SAPKANATIEVKA-------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRF 144 (190)
T ss_dssp EEEEET-TEEEEEEEEEEEC-------CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCE
T ss_pred EEEEeC-CcccccEEEEEec-------CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeE
Confidence 999998 7777778888876 6777777777789999999999999999999999999 777664 23333
Q ss_pred EEEEEecCCeeEEEEEEcCCC-CCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 359 SWNVTLKGDKYHIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 359 ~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.. ..++. ..+|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 145 ~~--~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 145 FI--INKEN--YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EE--EECSS--EEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EE--ecCCC--eeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 22 22222 2389999999 799999999999999999999888876
No 104
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.91 E-value=8.1e-23 Score=179.05 Aligned_cols=190 Identities=23% Similarity=0.403 Sum_probs=151.1
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............ ....|.|.+++.+|+|.|+|.
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~ 81 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG----RTHTLTVMTEEQEDEGVYTCI 81 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESS----SEEEEEEECCSGGGCEEEEEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCC----CEEEEEEecCCccCCEEEEEE
Confidence 3677777778888899999999999999999999999999998777666554332 134799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
+.+..+.......+.|...+...... ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......... .
T Consensus 82 ~~n~~~~~~~~~~l~v~~~p~~~~~~----~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~--~ 155 (197)
T 3lcy_A 82 ATNEVGEVETSSKLLLQATPQFHPGY----PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN--T 155 (197)
T ss_dssp EECSSCEEEEEEEEEEEEEEEECTTS----CCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE--C
T ss_pred EECCCCceeEEEEEEEEcCCCCCCCc----cCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEE--c
Confidence 99988888777888877633211000 11244567889999999999999999999999999998776655432 2
Q ss_pred CCeeEEEEEEcCCCC-CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 366 GDKYHIRLEVKDPRK-EDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 366 ~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+. ...|.|.++.. +|+|.|+|.|.|..|....++.|.|..
T Consensus 156 ~~--~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 156 EH--YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp SS--EEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CC--EEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 21 23899999985 899999999999999999998888864
No 105
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.91 E-value=9.4e-23 Score=179.25 Aligned_cols=187 Identities=18% Similarity=0.262 Sum_probs=138.3
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.|.|... ....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+..+.++.+..... .....|.|.+++.+|+|.|+|.
T Consensus 3 ~p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~--~g~~~L~I~~v~~~D~G~Y~C~ 79 (207)
T 3rbs_A 3 DPFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN--TGIIEMFMEKLQDEDEGTYTFQ 79 (207)
T ss_dssp ---CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTT--TCEEEEEESCCCGGGCEEEEEE
T ss_pred CCeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCC--CCEEEEEECCCChhhCEEEEEE
Confidence 4444443 3567788999999999965 7999999999999998877776655332 2334799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccC--------C------CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEECCE
Q psy670 286 VKNEFGESNANLNLNIEAEAE--------P------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGK 350 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~--------~------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~ 350 (540)
|.| |.......+.+..... . ...+|.+...+ ...+.+|+.+.|.|.+.|. |.|.|.|+++|.
T Consensus 80 a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~ 156 (207)
T 3rbs_A 80 LQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDER 156 (207)
T ss_dssp EEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTE
T ss_pred EEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCE
Confidence 999 4444443332211000 0 00156665544 4678899999999999998 999999999999
Q ss_pred EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 351 ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
.+..+.++. ......+|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus 157 ~l~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 157 EISVDEKHD------FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp EECCCCCCC------CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred ECCCCCceE------cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 997655421 1112337999999999999999999999999998888764
No 106
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.90 E-value=3e-22 Score=175.15 Aligned_cols=181 Identities=20% Similarity=0.407 Sum_probs=144.5
Q ss_pred CCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCc--eEEEEecCC-CeE--EEEEEEeCCCCCCcE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSK--IKIIVNEQD-DTY--EIICEITDPIGPDSG 280 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~--~~~~~~~~~-~~~--~~~l~i~~~~~~d~g 280 (540)
+|.|...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..... ..+...... ..+ ...|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 56677788888999999999999999 899999999999999876633 222222211 222 468999999999999
Q ss_pred EEEEEEEcCCCCee-eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCce
Q psy670 281 TYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRI 358 (540)
Q Consensus 281 ~y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~ 358 (540)
.|+|.+.+..+... ..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+......
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~ 154 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEG-------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH 154 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECC-------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS
T ss_pred EEEEEEEeCCCceecccEEEEEec-------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc
Confidence 99999999876543 336677755 6777777777888999999999999999999 99999999988765432
Q ss_pred EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEEEE
Q psy670 359 SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTLNI 405 (540)
Q Consensus 359 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V 405 (540)
. ....|.|.+++ |+|.|+|.|.|..|... .++.|.|
T Consensus 155 ------~---~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 ------G---PQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ------S---CCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ------C---CCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 1 11279999887 88999999999999885 7888888
No 107
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.90 E-value=4e-22 Score=176.80 Aligned_cols=183 Identities=22% Similarity=0.412 Sum_probs=145.1
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeec-CCCceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCce
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGE 188 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~ 188 (540)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++...... .....|.|.+++. +|+|.|+|.+.|..+.
T Consensus 15 ~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~ 90 (212)
T 2yd1_A 15 NQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP----GGISILRIEPVRAGRDDAPYECVAENGVGD 90 (212)
T ss_dssp CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEET----TTEEEEEESSCCTTTTCSEEEEEEECSSSC
T ss_pred ceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcC----CCeEEEEEEecCCCCcCceEEEEEEeCCCC
Confidence 3568899999999999999999999999999886 44455444321 1124899999999 9999999999999888
Q ss_pred -eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670 189 -SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 189 -~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (540)
....+.|.|...+......|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........... .
T Consensus 91 ~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-------~ 163 (212)
T 2yd1_A 91 AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-------G 163 (212)
T ss_dssp EEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET-------T
T ss_pred eEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC-------C
Confidence 67888888886544333346777777777788899999999999999999999999998876433222111 1
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCCeeee-EEEEEeec
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAE 304 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~ 304 (540)
.|.|.+++.+|+|.|+|.|.|..|..... +.|.|...
T Consensus 164 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~ 201 (212)
T 2yd1_A 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 201 (212)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence 79999999999999999999999987654 77887763
No 108
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.90 E-value=1.5e-22 Score=176.90 Aligned_cols=178 Identities=21% Similarity=0.416 Sum_probs=143.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC--ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
...+.+|+.+.|.|.+.+.|.+.+.|+++|..+.... +...... .....|.|.+++.+|+|.|+|.+.+..+.
T Consensus 14 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 88 (194)
T 2a38_A 14 SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS-----DGRAKLTIPAVTKANSGRYSLKATNGSGQ 88 (194)
T ss_dssp CEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEE-----TTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred ceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeC-----CCEEEEEECCCCcccCEEEEEEEEcCCce
Confidence 4578899999999999999999999999998886553 3333221 12348999999999999999999999888
Q ss_pred eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEE
Q psy670 189 SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEII 268 (540)
Q Consensus 189 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (540)
....+.|.|.... .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+............. ...
T Consensus 89 ~~~~~~l~v~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~ 160 (194)
T 2a38_A 89 ATSTAELLVKAET----APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD----LYS 160 (194)
T ss_dssp EEEEEEEEEECCC----EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETT----EEE
T ss_pred EeEEEEEEEccCC----CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCC----EEE
Confidence 8777888877422 25666666777788899999999999999999999999999988766655543321 236
Q ss_pred EEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 269 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 161 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 899999999999999999999998877777766
No 109
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.90 E-value=5.2e-22 Score=171.51 Aligned_cols=178 Identities=19% Similarity=0.403 Sum_probs=141.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............ ......|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~ 79 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSE--QHWIGFLSLKSVERSDAGRYWCQV 79 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEET--TEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecC--CCceEEEEEeecCcccCeEEEEEE
Confidence 455666777888899999999999999999999999999988776554443332 334568999999999999999999
Q ss_pred EcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEe
Q psy670 287 KNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 287 ~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
.+..+. ....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.....
T Consensus 80 ~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~------- 145 (182)
T 1rhf_A 80 EDGGETEISQPVWLTVEG-------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------- 145 (182)
T ss_dssp SSCTTCEECCCEEEEEEC-------SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------
T ss_pred EcCCCcEEEEEEEEEEec-------CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------
Confidence 998664 34567777765 6777777777889999999999999999999 9999999998865321
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTLNIE 406 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~ 406 (540)
. ...|.|.++ +|+|.|+|.|.|..|... .++.|.|+
T Consensus 146 ~----~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 146 S----PSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp S----SEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred C----ceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 1 127999887 589999999999999874 47777763
No 110
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.90 E-value=2.6e-22 Score=178.02 Aligned_cols=186 Identities=18% Similarity=0.317 Sum_probs=142.2
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCC-CCCCCeeEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCN 389 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~ 389 (540)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......... .++. ...|.|.++ +.+|+|.|+|.
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~--~~~L~i~~v~~~~d~G~Y~C~ 82 (212)
T 2yd6_A 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEF-DDGS--GSVLRIQPLRTPRDEAIYECV 82 (212)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEE-GGGT--EEEEEECSCCTTTTCEEEEEE
T ss_pred CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEE-cCCC--ceEEEEeccCCCCCCeEEEEE
Confidence 6778888888889999999999999999999999999999987654332222 1112 237999999 59999999999
Q ss_pred EEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670 390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g 469 (540)
|.|..|....++.|.|...+. . ....|.+...+....+.+|
T Consensus 83 a~n~~g~~~~~~~l~V~~~~~-----------------------------~----------~~~~p~~~~~~~~~~~~~g 123 (212)
T 2yd6_A 83 ASNNVGEISVSTRLTVLREDQ-----------------------------I----------PRGFPTIDMGPQLKVVERT 123 (212)
T ss_dssp EEETTEEEEEEEEEEEECGGG-----------------------------C----------CTTCCEEEECCCCEEEETT
T ss_pred EEcCCCcEEEEEEEEEeccCc-----------------------------c----------CCCcceeecCCcceeEecC
Confidence 999999888888888875100 0 0013667766777788899
Q ss_pred CeEEEEEEEeeecCCceEEEecCeecCCCC---e---------EEE---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEE
Q psy670 470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDN---K---------HVV---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYY 534 (540)
Q Consensus 470 ~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~---~---------~~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~ 534 (540)
+.++|.|.+.|.|.+.++|+++|..+.... + ..+ .+...|.|.|+|.+.+...+.......+.++
T Consensus 124 ~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp SCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 999999999999999999999999887541 1 222 2344689999999999888888888888888
Q ss_pred eccc
Q psy670 535 IAPF 538 (540)
Q Consensus 535 ~~~~ 538 (540)
.+|-
T Consensus 204 ~~~~ 207 (212)
T 2yd6_A 204 GTKH 207 (212)
T ss_dssp C---
T ss_pred eccc
Confidence 8874
No 111
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.90 E-value=2.5e-22 Score=174.98 Aligned_cols=184 Identities=20% Similarity=0.361 Sum_probs=140.3
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEe-CCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFK-ADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~-~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
+.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+... .++....... ....|.|.+++.+|+|.|+|
T Consensus 3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C 79 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD---DSSTLTIYNANIDDAGIYKC 79 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEET---TEEEEEECSCCGGGCEEEEE
T ss_pred eEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCC---CceEEEEccCCcccCEEEEE
Confidence 3445556677788999999999999876 78999999 88877633 3333322211 12479999999999999999
Q ss_pred EEEcCCC-CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEE
Q psy670 285 NVKNEFG-ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT 363 (540)
Q Consensus 285 ~~~~~~~-~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 363 (540)
.+.+..+ .....+.+.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...........
T Consensus 80 ~~~~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~ 152 (191)
T 1epf_A 80 VVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL 152 (191)
T ss_dssp EEEETTTEEEEEEEEEEEEC-------CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC
T ss_pred EEEcCCCcceEEEEEEEeec-------CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe
Confidence 9999874 445556666654 67777777778889999999999999999999999999999865443233222
Q ss_pred ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.++ .|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus 153 ~~~-----~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 153 SNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp TTS-----CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred cCC-----eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 222 69999999999999999999998766555555543
No 112
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.90 E-value=2.6e-22 Score=175.07 Aligned_cols=181 Identities=23% Similarity=0.438 Sum_probs=146.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... +..+. . .. ..|.|.+++.+|+|.|+|.
T Consensus 7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~-~~----~~L~i~~~~~~d~G~Y~C~ 80 (192)
T 2iep_A 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR-E-NG----QLLTILSVEDSDDGIYCCT 80 (192)
T ss_dssp EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE-G-GG----TEEEESSCCGGGCEEEEEE
T ss_pred CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc-C-Cc----cEEEEcCCCcccCeEEEEE
Confidence 6677777778888999999999999999999999999999886532 32222 1 11 1699999999999999999
Q ss_pred EEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 286 VKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 286 ~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
+.+..+. ......+.|.. +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+... .
T Consensus 81 ~~~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~--~- 150 (192)
T 2iep_A 81 ANNGVGGAVESCGALQVKM-------KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAV--L- 150 (192)
T ss_dssp EECSSSCCEEEEEEEEEEE-------EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEE--C-
T ss_pred EEcCCCceeEeEEEEEEEe-------CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEE--e-
Confidence 9998776 45556677766 56666667777888999999999999999999999999999877665432 1
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEM 407 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~ 407 (540)
..+ .|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 151 ~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 190 (192)
T 2iep_A 151 ESG----SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190 (192)
T ss_dssp TTS----CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred cCC----cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence 222 69999999999999999999999987 4568888876
No 113
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.90 E-value=3.9e-22 Score=173.44 Aligned_cols=179 Identities=17% Similarity=0.321 Sum_probs=135.9
Q ss_pred ccCCceeecCCCCeEEEEEEecccCCCeEEEEe-CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
...+....+.+|+.+.|.|.+.+.|. .+.|++ ++..+....+....... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~ 80 (189)
T 2v44_A 6 TISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG----VRSRLTIYNANIEDAGIYRCQATDA 80 (189)
T ss_dssp EESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEET----TEEEEEECSCCGGGCEEEEEEEECT
T ss_pred EecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCC----CeEEEEEccCCcccCeEEEEEEEeC
Confidence 34566777889999999999998877 999999 77777666655544332 1247999999999999999999998
Q ss_pred CCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCe
Q psy670 290 FGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368 (540)
Q Consensus 290 ~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
.|.. ...+.+.|.. +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+......+.....++
T Consensus 81 ~g~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-- 151 (189)
T 2v44_A 81 KGQTQEATVVLEIYQ-------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-- 151 (189)
T ss_dssp TSCEEEEEEEEEEEC-------CCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECTTS--
T ss_pred CCCcEEEEEEEEEec-------CCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEecCC--
Confidence 7765 5566666655 56666666667888999999999999999999999999988764222222222222
Q ss_pred eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus 152 ---~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~ 186 (189)
T 2v44_A 152 ---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186 (189)
T ss_dssp ---CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred ---cEEEEEcCcccCeEEEEEEEccccCceeeeeEEEE
Confidence 79999999999999999999998766555554443
No 114
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.89 E-value=4.5e-22 Score=174.35 Aligned_cols=182 Identities=21% Similarity=0.322 Sum_probs=142.0
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+...... ....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 88 (197)
T 2j8h_A 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF----KGGYHQLIIASVTDDDATVYQVRATNQGGSV 88 (197)
T ss_dssp CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE----TTTEEEEEECSCCGGGCSEEEEEEEETTEEE
T ss_pred ccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEc----CCCEEEEEECcCCHHhCEEEEEEEEECCCce
Confidence 456889999999999999999999999999988654 34433322 1123489999999999999999999998888
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
...+.|.|...+.. ..|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....+.+..... ...|
T Consensus 89 ~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~----~~~L 162 (197)
T 2j8h_A 89 SGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSL 162 (197)
T ss_dssp EEEEEEEEEEEEEE--CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSS----EEEE
T ss_pred eEEEEEEEcCCCcC--CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCC----ceEE
Confidence 88888888753221 12222333455667889999999999999999999999999988666655533221 2479
Q ss_pred EEeC-CCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 270 EITD-PIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 270 ~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
.|.+ +..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 9999 99999999999999999988877777764
No 115
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.89 E-value=1.1e-21 Score=170.95 Aligned_cols=184 Identities=24% Similarity=0.463 Sum_probs=140.7
Q ss_pred CCeeccC--CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 207 APSFIEK--PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 207 ~p~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..... .. ..|.|.+++.+|+|.|+|
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~----~~L~i~~~~~~d~G~Y~C 75 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--SN----TELTVRNIINSDGGPYVC 75 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEET--TT----TEEEECSCCGGGCEEEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEeC--Ce----eEEEEecCChhcCcEEEE
Confidence 4555443 335778899999999999999999999999999987765554321 11 169999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEccCCC---ceE
Q psy670 285 NVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQQTD---RIS 359 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~~~~---~~~ 359 (540)
.+.+..+.....+.|.|.. +|.+...+ ...+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.... ...
T Consensus 76 ~~~~~~~~~~~~~~l~V~~-------~p~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 147 (192)
T 2va4_A 76 RATNKAGEDEKQAFLQVFV-------QPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR 147 (192)
T ss_dssp EEEETTEEEEEEEEEEEEE-------EEEEEEEC-CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSC
T ss_pred EEEccccccceEEEEEEEc-------cCcccccC-cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCc
Confidence 9999988777777777765 44444433 34567799999999999999999999998 66554321 111
Q ss_pred EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 360 WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 360 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
........ ...|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus 148 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 148 IEVKGQHG--SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp EEEEEETT--EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEeeccC--ceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEeC
Confidence 12222211 2389999999999999999999999999888888873
No 116
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=174.17 Aligned_cols=183 Identities=22% Similarity=0.388 Sum_probs=136.6
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............. ..|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~ 76 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-----NNLQILNINKSDEGIYRCEG 76 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTT-----SCEEETTCCGGGCEEEEEEE
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecC-----CCEEEeeCCHhHCcEEEEEE
Confidence 4566667777888899999999999999999999999998776432222222211 15999999999999999999
Q ss_pred EcCCCCee--eeEEEEEeeccCCCCCCCeEEeCCc--eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670 287 KNEFGESN--ANLNLNIEAEAEPEGDPPTFIEKPK--IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362 (540)
Q Consensus 287 ~~~~~~~~--~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 362 (540)
.+..+... ..+.+.+.. +|.+...+. ...+.+|+.+.|.|.+.+.|.+.+.|+++|..+........
T Consensus 77 ~~~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~-- 147 (189)
T 2v5t_A 77 RVEARGEIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL-- 147 (189)
T ss_dssp EETTTTEEEEEEEEEEEEE-------EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEE--
T ss_pred EEcCCCceEEEEEEEEecC-------CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEE--
Confidence 98875543 334455544 444443332 34567899999999999999999999999999887665433
Q ss_pred EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
...+. .|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 148 ~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 148 KGSNT----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp ETTTT----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ecCCC----EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 22222 799999999999999999999999999888888753
No 117
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.89 E-value=1.1e-21 Score=170.82 Aligned_cols=168 Identities=24% Similarity=0.390 Sum_probs=135.7
Q ss_pred cccC-CCeEEEEEEEeecCC--CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 113 IHQD-GDLLVMECVLEASPM--PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 113 ~v~~-G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
.+.+ |+.+.|.|.+.+.|. +.+.|++++..+....... ....|.|.+++.+|+|.|+|.+.+. +..
T Consensus 13 ~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~ 81 (190)
T 2wv3_A 13 IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA----------SNMEYRINKPRAEDSGEYHCVYHFV-SAP 81 (190)
T ss_dssp ECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC----------SEEEEEESSCCGGGCEEEEEEEEET-TEE
T ss_pred EEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe----------ccEEEEEecCCcccCEEEEEEEEeC-Ccc
Confidence 4445 999999999988887 7899999999886553321 1238999999999999999999998 888
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe--CCEEee---ccCceEEEEecCCCe
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--ADKLVK---ESSKIKIIVNEQDDT 264 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~l~---~~~~~~~~~~~~~~~ 264 (540)
...+.|.|.. +|.+...+....+.+|+.+.|.|.+.++|.+.+.|++ ++..+. ...++.+... ..
T Consensus 82 ~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~--~~- 151 (190)
T 2wv3_A 82 KANATIEVKA-------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK--EN- 151 (190)
T ss_dssp EEEEEEEEEC-------CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC--SS-
T ss_pred cccEEEEEec-------CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecC--CC-
Confidence 8888888885 6777766777778899999999999999999999999 777764 2333333221 11
Q ss_pred EEEEEEEeCCC-CCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 265 YEIICEITDPI-GPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 265 ~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
...|.|.+++ .+|.|.|+|.|.|..|.....+.|.|.
T Consensus 152 -~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 152 -YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp -EEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred -eeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 2479999999 799999999999999988888877774
No 118
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.89 E-value=4.5e-23 Score=180.18 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=121.3
Q ss_pred eecCCCCeEEEEEE---ecccCCCeEEEEeCCEEeecc-----------------CceEEEEecCCCeEEEEEEEeCCCC
Q psy670 217 IPNESGTLIQMKCK---CSAKPRPEVKWFKADKLVKES-----------------SKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 217 ~~~~~g~~~~l~C~---~~~~p~~~v~W~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
+++..|+.++|.|. +.+.|.+.|.|+|+|..+... ..+..... .. ...|.|.+++.
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~L~I~~v~~ 78 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS--AN--TFFLVVTAANI 78 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEE--TT--EEEEEESSCCG
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEc--CC--EEEEEEccCCH
Confidence 45668999999996 456899999999976432110 01111111 11 24799999999
Q ss_pred CCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC
Q psy670 277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD 356 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~ 356 (540)
+|+|.|+|.+.|..|.....+.|.|.. ||.+...+....+.+|+.+.|.|.+.|.|.|.|.|++++..+....
T Consensus 79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~ 151 (203)
T 4fa8_A 79 SHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT 151 (203)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC--------
T ss_pred HHCeEEEEEEEcCCCcEEEEEEEEecC-------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcc
Confidence 999999999999988888888888875 6666666667778899999999999999999999998776553221
Q ss_pred --ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 357 --RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 357 --~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
..++....++. ...|.|.++..+|+|.|+|.|.|..|....
T Consensus 152 ~~~~r~~~~~~g~--l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 152 AANGGVMKEKDGS--LSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp ----CCEECTTSC--EEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred cccceEEEeCCCC--EEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 11222223332 235667788999999999999999998764
No 119
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.89 E-value=1.9e-21 Score=170.07 Aligned_cols=174 Identities=15% Similarity=0.331 Sum_probs=136.6
Q ss_pred CCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCC--ceEEEEeecCcceE--EEEEEEcCCCCCCCeEEEEEEEc
Q psy670 110 KPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKDTY--LLRLEINNPTKDDGGNYRCNACN 184 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~ 184 (540)
....+.+|+++.|.|.+. +.|.+.+.|+++|..+.... +..+.....+...+ ...|.|.+++.+|+|.|+|.+.+
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 89 (195)
T 2c5d_C 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFL 89 (195)
T ss_dssp CCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEE
T ss_pred hheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEe
Confidence 345788999999999998 89999999999999987653 23332222222222 45899999999999999999999
Q ss_pred CCceeE-EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCC
Q psy670 185 SIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQD 262 (540)
Q Consensus 185 ~~~~~~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~ 262 (540)
..+... ..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+......
T Consensus 90 ~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-------- 154 (195)
T 2c5d_C 90 GHQTFVSQPGYVGLEG-------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-------- 154 (195)
T ss_dssp TTEEEECCCEEEEECC-------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--------
T ss_pred CCCceecccEEEEEec-------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--------
Confidence 877653 347788764 6777777777888899999999999999999 99999999887655432
Q ss_pred CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee-eeEEEEE
Q psy670 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESN-ANLNLNI 301 (540)
Q Consensus 263 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v 301 (540)
.....|.|.+++ |+|.|+|.|.|..|... ..+.|.|
T Consensus 155 -~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 -GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp -SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred -CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 112378999887 78999999999998774 6777777
No 120
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.89 E-value=9.7e-22 Score=172.77 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=132.5
Q ss_pred ccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+.+|+.+.|.|.+. +.|.+.+.|+++|..+..+.+..+... ......+|.|.+++.+|+|.|+|.+.| |...
T Consensus 12 ~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~---~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~ 86 (207)
T 3rbs_A 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHID---RNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT 86 (207)
T ss_dssp EEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEEC---TTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred eEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEe---CCCCEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence 4578999999999995 479999999999999987777666542 222445899999999999999999999 3333
Q ss_pred EEEEEEEecCcC---------C-----CCCCCeeccCCceeecCCCCeEEEEEEeccc-CCCeEEEEeCCEEeeccCceE
Q psy670 191 ANIALNFQGGEN---------G-----AGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIK 255 (540)
Q Consensus 191 ~~~~l~v~~~~~---------~-----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~~~~ 255 (540)
....+.+..... . ...+|.+...+ ...+.+|+.+.|.|.+.+. |.+.+.|++++..+....++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~- 164 (207)
T 3rbs_A 87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH- 164 (207)
T ss_dssp EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC-
T ss_pred EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce-
Confidence 333332211000 0 00145554433 3667789999999999998 99999999999998765432
Q ss_pred EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 256 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
.......+|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus 165 -----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 165 -----DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp -----CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred -----EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 11223357999999999999999999999998887776654
No 121
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.9e-21 Score=170.27 Aligned_cols=177 Identities=25% Similarity=0.459 Sum_probs=142.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+....+...... ....+|.|.+++.+|+|.|+|.+.+..+...
T Consensus 16 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~ 90 (197)
T 3lcy_A 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD-----GRTHTLTVMTEEQEDEGVYTCIATNEVGEVE 90 (197)
T ss_dssp CEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEES-----SSEEEEEEECCSGGGCEEEEEEEECSSCEEE
T ss_pred ceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeC-----CCEEEEEEecCCccCCEEEEEEEECCCCcee
Confidence 45688999999999999999999999999999877766655432 1234899999999999999999999988888
Q ss_pred EEEEEEEecCcCCCCCCCeecc---CCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIE---KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (540)
..+.|.|.. +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............ ...
T Consensus 91 ~~~~l~v~~-------~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~----~~~ 159 (197)
T 3lcy_A 91 TSSKLLLQA-------TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE----HYT 159 (197)
T ss_dssp EEEEEEEEE-------EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECS----SEE
T ss_pred EEEEEEEEc-------CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcC----CEE
Confidence 888888875 333221 234456678999999999999999999999999998877665554322 124
Q ss_pred EEEEeCCCC-CCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 268 ICEITDPIG-PDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 268 ~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
.|.|.++.. +|+|.|+|.|.|..|.....+.|.|..
T Consensus 160 ~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 799999985 899999999999999888888777753
No 122
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.89 E-value=1.2e-22 Score=177.50 Aligned_cols=171 Identities=13% Similarity=0.209 Sum_probs=122.8
Q ss_pred CccccCCCeEEEEEE---EeecCCCceEEEeCCEeecCC-----------------CceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECV---LEASPMPDIIWYQGTKVIEDT-----------------GRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~---~~~~p~~~v~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
.+.+..|++++|.|. +.+.|.+.+.|+|+|...... .++.+.. ......|.|.++
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v 76 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR-----SANTFFLVVTAA 76 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEE-----ETTEEEEEESSC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEE-----cCCEEEEEEccC
Confidence 356779999999995 457789999999976432110 1111111 112348999999
Q ss_pred CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec
Q psy670 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE 250 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~ 250 (540)
+.+|+|.|+|.+.|..|.....+.|.|.. +|.+...+....+.+|+.+.|.|.+.|.|.|.|.|++++..+..
T Consensus 77 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~ 149 (203)
T 4fa8_A 77 NISHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA 149 (203)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------
T ss_pred CHHHCeEEEEEEEcCCCcEEEEEEEEecC-------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecC
Confidence 99999999999999999988889998874 66666677778889999999999999999999999987765532
Q ss_pred cC--ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670 251 SS--KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 251 ~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 295 (540)
.. ...+..... +. ...+.+.+++.+|+|.|+|.|.|..|....
T Consensus 150 ~~~~~~r~~~~~~-g~-l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 150 PTAANGGVMKEKD-GS-LSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp ------CCEECTT-SC-EEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred cccccceEEEeCC-CC-EEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 21 111122212 21 235667889999999999999999997653
No 123
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.88 E-value=7e-21 Score=168.80 Aligned_cols=180 Identities=21% Similarity=0.325 Sum_probs=140.3
Q ss_pred CCCeEEEEEEeccc-CCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670 221 SGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299 (540)
Q Consensus 221 ~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 299 (540)
.++.+.|.|.+.+. |.+.+.|++++..+....+..+..... ...|.|.+++.+|+|.|+|.+.+..+.....+.+
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l 91 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 91 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCC----EEEEEECCCCcccCEEEEEEEecCCcceEEEEEE
Confidence 57888999999884 588999999999998776665544332 2469999999999999999999987776665555
Q ss_pred EEeecc--------------CCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 300 NIEAEA--------------EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 300 ~v~~~~--------------~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
.+.... .....++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++......+
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~ 171 (212)
T 2r15_A 92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG 171 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETT
T ss_pred EEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCC
Confidence 443200 000013344445666788999999999999999999999999999998877665543322
Q ss_pred CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+ ...|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 172 ~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 172 R---TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp T---EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred C---EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 2 24899999999999999999999999999998888875
No 124
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.88 E-value=2.7e-22 Score=177.98 Aligned_cols=189 Identities=25% Similarity=0.486 Sum_probs=143.1
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc---eEEEEecCCCeEEEEEEEeCCCCCCcEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK---IKIIVNEQDDTYEIICEITDPIGPDSGTY 282 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 282 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ........+......+.|.+++.+|+|.|
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 87 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence 377777788888899999999999999999999999999988764321 11112222333333456677899999999
Q ss_pred EEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEE
Q psy670 283 RCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISW 360 (540)
Q Consensus 283 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~ 360 (540)
+|.+.+..|.. ...+.+.|... ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus 88 ~C~~~n~~g~~~~~~~~l~V~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~ 161 (212)
T 2v9r_A 88 VCVARNYLGEAVSHDASLEVAIL------RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT 161 (212)
T ss_dssp EEEEEETTEEEECCCEEEEECEE------CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEE
T ss_pred EEEEECCCCceeecceEEEEEec------cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEE
Confidence 99999987754 44566777654 2333344556678899999999998 8899999999999999876443221
Q ss_pred EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE-EEEEEEEE
Q psy670 361 NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA-NLTLNIEM 407 (540)
Q Consensus 361 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~ 407 (540)
. .++ .|.|.++..+|+|.|+|.|.|..|.... .+.|.|..
T Consensus 162 -~--~~~----~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~ 202 (212)
T 2v9r_A 162 -I--RGG----KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202 (212)
T ss_dssp -E--ETT----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred -c--cCC----eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence 1 122 7999999999999999999999998654 47888887
No 125
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.88 E-value=1.5e-21 Score=169.72 Aligned_cols=175 Identities=23% Similarity=0.374 Sum_probs=134.7
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
....+.+|+++.|.|.+.+.|. .+.|++ ++..+....+....... ....|.|.+++.+|+|.|+|.+.+..+.
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 83 (189)
T 2v44_A 10 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQATDAKGQ 83 (189)
T ss_dssp SEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEECTTSC
T ss_pred CceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCC-----CeEEEEEccCCcccCeEEEEEEEeCCCC
Confidence 3457889999999999988877 999999 78777766666554321 2348999999999999999999998776
Q ss_pred e-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670 189 S-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 189 ~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (540)
. ...+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+......
T Consensus 84 ~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----- 151 (189)
T 2v44_A 84 TQEATVVLEIYQ-------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN----- 151 (189)
T ss_dssp EEEEEEEEEEEC-------CCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECTTS-----
T ss_pred cEEEEEEEEEec-------CCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEecCC-----
Confidence 5 6777888875 56666556667788999999999999999999999999988764222122222111
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
.|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus 152 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~ 186 (189)
T 2v44_A 152 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186 (189)
T ss_dssp CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred cEEEEEcCcccCeEEEEEEEccccCceeeeeEEEE
Confidence 69999999999999999999998776655555543
No 126
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=172.86 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=132.1
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.|.++ .+.+.|+|+|.++..+.++++...... .+|.|.+++.+|+|.|+|.+.|..+....++.
T Consensus 22 l~C~~~~~~p-----~~~i~W~~~g~~i~~~~~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~ 90 (212)
T 2r15_A 22 LYSFVTYYVE-----DLKVNWSHNGSAIRYSDRVKTGVTGEQ------IWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 90 (212)
T ss_dssp EEEEBSSCCS-----SCEEEEEETTEECCCCSSEEEEEETTE------EEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCC-----CceEEEEECCEEccCCCeEEEEEeCCE------EEEEECCCCcccCEEEEEEEecCCcceEEEEE
Confidence 4577777542 289999999999998888887655443 68999999999999999999998887776666
Q ss_pred EEEeecCCc---------c-ccCCCCCCCC--CCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEee
Q psy670 88 LNFSEEDGK---------L-KVPGGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155 (540)
Q Consensus 88 l~v~~~~~~---------~-~i~~~~~~~~--~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 155 (540)
|.|...... . ......++.+ ......+.+|+.+.|.|.+.|.|.+.+.|++++..+....+..+....
T Consensus 91 l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~ 170 (212)
T 2r15_A 91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA 170 (212)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET
T ss_pred EEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC
Confidence 654320000 0 0000000000 122356889999999999999999999999999999877776655431
Q ss_pred cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy670 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198 (540)
Q Consensus 156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 198 (540)
.....|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus 171 ----~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 171 ----GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp ----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 123489999999999999999999999999888888886
No 127
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.88 E-value=6e-22 Score=176.42 Aligned_cols=191 Identities=25% Similarity=0.458 Sum_probs=142.6
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............+.....+.|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 47888888888889999999999999999999999999999887643211111122333333457889999999999999
Q ss_pred EEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceE----
Q psy670 286 VKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRIS---- 359 (540)
Q Consensus 286 ~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~---- 359 (540)
+.+..|.. .....+.|... ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.......
T Consensus 88 ~~n~~g~~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~ 161 (217)
T 2vr9_A 88 AKNRVGQAVSRHASLQIAVL------RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161 (217)
T ss_dssp EEETTEEEECCCEEEEECEE------CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CC
T ss_pred EecCCCccccccceEEEEEe------CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccC
Confidence 99987754 33566666553 2333344556778899999999999 889999999999999887432211
Q ss_pred --EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 360 --WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 360 --~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
.... .+. .|.|.+++.+|+|.|+|.|.|..|....+..+.+..
T Consensus 162 ~~~~~~-~~~----~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 162 SRVRIV-DGG----NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp CSEEEE-TTT----EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred CcEEec-CCC----cEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence 1111 222 799999999999999999999999887766655544
No 128
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.2e-21 Score=171.72 Aligned_cols=175 Identities=19% Similarity=0.344 Sum_probs=142.7
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
.+.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..|.|.+++.+|+|.|+|.+
T Consensus 18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~~ 84 (218)
T 3k0w_A 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-------------SELIFNAVHVKDAGFYVCRV 84 (218)
T ss_dssp -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS-------------SEEEETTCCGGGCEEEEEEE
T ss_pred CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC-------------CEEEEccCChhhCeEeEEEE
Confidence 56677778888889999999999999999999999999988765432 27999999999999999999
Q ss_pred EcCCCCe-eeeEEEEEeeccCC--------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc
Q psy670 287 KNEFGES-NANLNLNIEAEAEP--------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR 357 (540)
Q Consensus 287 ~~~~~~~-~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~ 357 (540)
.+..+.. +..+.+.|...+.. ...+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 85 ~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~ 164 (218)
T 3k0w_A 85 NNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK 164 (218)
T ss_dssp ECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS
T ss_pred EcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC
Confidence 9987754 45567777653210 11236777777778899999999999999999999999999998876432
Q ss_pred eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEEE
Q psy670 358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEM 407 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~ 407 (540)
. .|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus 165 ~-------------~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 165 K-------------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp S-------------EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred C-------------EEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 1 7999999999999999999998876 56777788776
No 129
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.88 E-value=3.3e-21 Score=167.90 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=135.9
Q ss_pred CccccCCCeEEEEEEEeecC-CCceEEEe-CCEeec-CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-
Q psy670 111 PTIHQDGDLLVMECVLEASP-MPDIIWYQ-GTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI- 186 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~- 186 (540)
...+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+. ...++...... .....|.|.+++.+|+|.|+|.+.+..
T Consensus 11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 86 (191)
T 1epf_A 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTAEDG 86 (191)
T ss_dssp SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECC----CCceEEEEccCCcccCEEEEEEEEcCCC
Confidence 45688999999999998876 78999999 888776 34444443221 123489999999999999999999987
Q ss_pred ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
+.....+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+......
T Consensus 87 ~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---- 155 (191)
T 1epf_A 87 TQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---- 155 (191)
T ss_dssp EEEEEEEEEEEEC-------CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS----
T ss_pred cceEEEEEEEeec-------CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCC----
Confidence 4567777888774 67777777778888999999999999999999999999998865433222222221
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
.|.|.+++.+|+|.|+|.|.|..+.......+.|
T Consensus 156 -~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 156 -YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp -CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred -eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 6999999999999999999998766555555544
No 130
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.87 E-value=3.3e-21 Score=174.66 Aligned_cols=189 Identities=19% Similarity=0.330 Sum_probs=140.3
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
....+.+|+++.|.|.+.+.|.+.+.|++++..+............. .. ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~v~~~d~G~Y~C~~~~~~~~~ 98 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH-QQ---WSLVMESVVPSDRGNYTCVVENKFGSI 98 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEG-GG---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeec-cc---eEEEEEeCCcccCEEEEEEEeecCCce
Confidence 34678899999999999999999999999999886543321111111 11 179999999999999999999998888
Q ss_pred EEEEEEEEecCcCCCCCCCe-eccCCceeecCCCCeEEEEEEecccCCCeEEEEe----CCEEeeccCceEEEE----ec
Q psy670 190 NANIALNFQGGENGAGFAPS-FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK----ADKLVKESSKIKIIV----NE 260 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~l~~~~~~~~~~----~~ 260 (540)
...+.+.|...... .|. +...+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.......... ..
T Consensus 99 ~~~~~l~V~~~~~~---~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~ 175 (241)
T 3grw_A 99 RQTYTLDVLERSPH---RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175 (241)
T ss_dssp EEEEEEEEECCCCC---CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEEC
T ss_pred EEEEEEEEeccCCC---CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeee
Confidence 88888888753221 233 3334556778899999999999999999999999 777765443322111 11
Q ss_pred CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~ 305 (540)
........|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus 176 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p 220 (241)
T 3grw_A 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220 (241)
T ss_dssp SBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred eecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence 223345689999999999999999999999998888888887643
No 131
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.87 E-value=3.9e-21 Score=167.56 Aligned_cols=175 Identities=21% Similarity=0.346 Sum_probs=137.7
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++. ...++. .|.|.+++.+|+|.|+|.
T Consensus 7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~----~L~i~~~~~~d~G~Y~C~ 80 (192)
T 2iep_A 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS--IRENGQ----LLTILSVEDSDDGIYCCT 80 (192)
T ss_dssp EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEE--EEGGGT----EEEESSCCGGGCEEEEEE
T ss_pred CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEE--EcCCcc----EEEEcCCCcccCeEEEEE
Confidence 456666667778899999999999999999999999999988653 3322 223333 799999999999999999
Q ss_pred EEcCCee-eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecC
Q psy670 390 IKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISK 468 (540)
Q Consensus 390 a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 468 (540)
+.|..|. ......|.|.. +|.+...+....+.+
T Consensus 81 ~~~~~~~~~~~~~~l~v~~----------------------------------------------~p~~~~~~~~~~~~~ 114 (192)
T 2iep_A 81 ANNGVGGAVESCGALQVKM----------------------------------------------KPKITRPPINVKIIE 114 (192)
T ss_dssp EECSSSCCEEEEEEEEEEE----------------------------------------------EEEEEECCCCEEEET
T ss_pred EEcCCCceeEeEEEEEEEe----------------------------------------------CCccccCCcceEEeC
Confidence 9998876 45667787777 677777777788999
Q ss_pred CCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE---------EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670 469 KKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV---------HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP 537 (540)
Q Consensus 469 g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~---------~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~ 537 (540)
|+.++|.|.+.|.|.+.++|++++..+..+.++.. .+...|.|.|+|.+.............+.+...|
T Consensus 115 g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp TSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred CCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 99999999999999999999999998876544322 3455789999999998766665556666665544
No 132
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.87 E-value=4.6e-21 Score=173.71 Aligned_cols=188 Identities=21% Similarity=0.439 Sum_probs=141.9
Q ss_pred CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceE-EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... ....... ..|.|.+++.+|+|.|+|.+.+..+.
T Consensus 22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~~~~~~ 97 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ----WSLVMESVVPSDRGNYTCVVENKFGS 97 (241)
T ss_dssp CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccc----eEEEEEeCCcccCEEEEEEEeecCCc
Confidence 446778899999999999999999999999999886544321 1111111 26999999999999999999998887
Q ss_pred eeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEccCCCeEEEEE----CCEEccCCCceEEEE----E
Q psy670 293 SNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH----EGKELQQTDRISWNV----T 363 (540)
Q Consensus 293 ~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~~~----~ 363 (540)
......+.|..... .++.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++ +|..+.......... .
T Consensus 98 ~~~~~~l~V~~~~~---~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (241)
T 3grw_A 98 IRQTYTLDVLERSP---HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174 (241)
T ss_dssp EEEEEEEEEECCCC---CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEE
T ss_pred eEEEEEEEEeccCC---CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEee
Confidence 77777777765322 133333 34566778899999999999999999999999 887776554322211 1
Q ss_pred ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEE
Q psy670 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408 (540)
Q Consensus 364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 408 (540)
.........|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus 175 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 219 (241)
T 3grw_A 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219 (241)
T ss_dssp CSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred eeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCC
Confidence 122233458999999999999999999999999999999999873
No 133
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.87 E-value=1.9e-20 Score=161.63 Aligned_cols=168 Identities=17% Similarity=0.340 Sum_probs=131.7
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ...+......|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 79 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYI--PVSEQHWIGFLSLKSVERSDAGRYWCQV 79 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEE--EEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEE--EecCCCceEEEEEeecCcccCeEEEEEE
Confidence 34566667778899999999999999999999999999999877654433 2333444568999999999999999999
Q ss_pred EcCCee-eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670 391 KNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469 (540)
Q Consensus 391 ~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g 469 (540)
.|..|. ....+.|.|.. +|.+...+....+.+|
T Consensus 80 ~~~~~~~~~~~~~l~V~~----------------------------------------------~p~~~~~~~~~~~~~g 113 (182)
T 1rhf_A 80 EDGGETEISQPVWLTVEG----------------------------------------------VPFFTVEPKDLAVPPN 113 (182)
T ss_dssp SSCTTCEECCCEEEEEEC----------------------------------------------SCEEEECCCCEEECTT
T ss_pred EcCCCcEEEEEEEEEEec----------------------------------------------CCeEEecCcceEecCC
Confidence 998664 45677888876 7888877778889999
Q ss_pred CeEEEEEEEeeecCC-ceEEEecCeecCCC--CeEEEEEE-ecCCeEEEEEEeeeeeeeeC
Q psy670 470 KTVVIECKVMSMYEP-SVTWMKEKNTVKED--NKHVVHIE-QVKDVSMNFELWLGIVEKRG 526 (540)
Q Consensus 470 ~~~~l~C~v~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~-~~~~g~y~c~~~~~~~~~~~ 526 (540)
+.+.|.|.+.|.|.| .++|++++..+... ....+.+. ..|.|.|+|.+.........
T Consensus 114 ~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~s 174 (182)
T 1rhf_A 114 APFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASS 174 (182)
T ss_dssp CCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred CEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEeccccCeEEEEEEECCCCCccc
Confidence 999999999999999 99999999988654 23344333 36799999999976555443
No 134
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.87 E-value=1e-20 Score=164.84 Aligned_cols=171 Identities=25% Similarity=0.471 Sum_probs=134.1
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA 191 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 191 (540)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+... . ..|.|.+++.+|+|.|+|.+.+..+....
T Consensus 14 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 86 (192)
T 2va4_A 14 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS----N---TELTVRNIINSDGGPYVCRATNKAGEDEK 86 (192)
T ss_dssp EETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEETT----T---TEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEeCC----e---eEEEEecCChhcCcEEEEEEEccccccce
Confidence 4678999999999999999999999999999877766554321 1 17999999999999999999999888888
Q ss_pred EEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEeecc-----CceEEEEecCCCe
Q psy670 192 NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVKES-----SKIKIIVNEQDDT 264 (540)
Q Consensus 192 ~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~~~-----~~~~~~~~~~~~~ 264 (540)
.+.|.|.. +|.+...+ ...+.+|+.+.|.|.+.+.|.+.+.|+++ +..+... ........ .
T Consensus 87 ~~~l~V~~-------~p~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 154 (192)
T 2va4_A 87 QAFLQVFV-------QPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ--H-- 154 (192)
T ss_dssp EEEEEEEE-------EEEEEEEC-CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEEE--T--
T ss_pred EEEEEEEc-------cCcccccC-cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEeec--c--
Confidence 88888874 45444333 34456799999999999999999999998 5555432 12222111 1
Q ss_pred EEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 265 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 155 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 155 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 1247999999999999999999999998877777766
No 135
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.87 E-value=4.6e-21 Score=168.44 Aligned_cols=184 Identities=20% Similarity=0.294 Sum_probs=136.8
Q ss_pred ccCCceeecCCCCeEEEEEE-ecccCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670 211 IEKPRIIPNESGTLIQMKCK-CSAKPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~-~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 288 (540)
...+....+.+|+.+.|.|. +.+.|. +.+.|++++..+.............. ..|.|.+++.+|+|.|+|.+.+
T Consensus 12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~~ 87 (201)
T 3s97_C 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN----GNLYIANVEASDKGNYSCFVSS 87 (201)
T ss_dssp SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTT----CCEEESSCCGGGCEEEEEEEEE
T ss_pred cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCC----CeEEECcCCcccCeEEEEEEEe
Confidence 33456778889999999999 788888 99999999877643222111122122 2699999999999999999998
Q ss_pred CCCCeee---eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 289 EFGESNA---NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 289 ~~~~~~~---~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
..+.... .+.+.+.........+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...... ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~----~~~ 163 (201)
T 3s97_C 88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI----STS 163 (201)
T ss_dssp GGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEE----ETT
T ss_pred cCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceee----cCC
Confidence 6655432 233333332222223555655555778889999999999999999999999999977654321 122
Q ss_pred CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+. .|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 164 ~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 164 GA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp TT----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CC----EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 32 89999999999999999999999999999988885
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.87 E-value=3.2e-22 Score=191.64 Aligned_cols=206 Identities=13% Similarity=0.251 Sum_probs=154.9
Q ss_pred CCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc
Q psy670 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK 253 (540)
Q Consensus 174 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~ 253 (540)
+.|.|+|.+.+.... + ......+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 136 ~~~~~~C~~~~~l~~----l-------~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~ 204 (347)
T 2ifg_A 136 PEQKLQCHGQGPLAH----M-------PNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM 204 (347)
T ss_dssp GGGCCCCSSSSCSSC----C-------CCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC
T ss_pred cccCCCCCCChHHhc----C-------CcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc
Confidence 468899987662111 1 11122367777777778889999999999999999999999998876432211
Q ss_pred eEEEEecCCCeEEEEEEEeCCCCCCcE-EEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEE
Q psy670 254 IKIIVNEQDDTYEIICEITDPIGPDSG-TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVME 332 (540)
Q Consensus 254 ~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~ 332 (540)
.........|.|.+++.+|+| .|+|.+.+..|.....+.+.|.. +|.+ ......+|+.+.|.
T Consensus 205 ------~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~-------~P~i----~~~~~~~g~~v~l~ 267 (347)
T 2ifg_A 205 ------KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF-------PASV----QLHTAVEMHHWCIP 267 (347)
T ss_dssp ------CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE-------EEEE----EECCCEESSSEEEE
T ss_pred ------cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC-------CCee----eeccCccCceEEEE
Confidence 112233458999999999999 99999999988877777777655 4443 11224578999999
Q ss_pred EEEEccCCCeEEEEECCEEccCCCceEEEEEe---cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 333 CKVKAKPMPEIVWFHEGKELQQTDRISWNVTL---KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 333 C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
|.+.|.|.|.|.|+++|..+............ +......+|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 268 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 268 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred EEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence 99999999999999999999866554443322 1223345899999999999999999999999999998888765
No 137
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.87 E-value=5.6e-21 Score=166.08 Aligned_cols=172 Identities=24% Similarity=0.463 Sum_probs=129.2
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC--CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+..... +. .|.|.+++.+|+|.|+|.+.+..+.
T Consensus 11 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~---~L~i~~~~~~d~G~Y~C~~~~~~~~ 82 (189)
T 2v5t_A 11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-----NN---NLQILNINKSDEGIYRCEGRVEARG 82 (189)
T ss_dssp SEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT-----TS---CEEETTCCGGGCEEEEEEEEETTTT
T ss_pred CEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec-----CC---CEEEeeCCHhHCcEEEEEEEEcCCC
Confidence 457889999999999999999999999998877532 3333221 11 6999999999999999999987643
Q ss_pred e--EEEEEEEEecCcCCCCCCCeeccCCc--eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCe
Q psy670 189 S--NANIALNFQGGENGAGFAPSFIEKPR--IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264 (540)
Q Consensus 189 ~--~~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~ 264 (540)
. ...+.+.+.. +|.+...+. ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... ..
T Consensus 83 ~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~--~~-- 151 (189)
T 2v5t_A 83 EIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--SN-- 151 (189)
T ss_dssp EEEEEEEEEEEEE-------EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET--TT--
T ss_pred ceEEEEEEEEecC-------CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec--CC--
Confidence 3 3455666654 444443332 4567889999999999999999999999999987766544321 11
Q ss_pred EEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 265 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
..|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+
T Consensus 152 --~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 152 --TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp --TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred --CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 2699999999999999999999999888887777753
No 138
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.87 E-value=3.1e-21 Score=173.60 Aligned_cols=186 Identities=23% Similarity=0.417 Sum_probs=140.5
Q ss_pred ceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEE-EEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ...... ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~~~~ 102 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSI 102 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCc----ceEEEecCCcccCEEEEEEEecccCcc
Confidence 567788999999999999999999999999998865543211 111111 269999999999999999999998887
Q ss_pred eeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccCCCeEEEEE----CCEEccCCCceEEEEEecC--
Q psy670 294 NANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKPMPEIVWFH----EGKELQQTDRISWNVTLKG-- 366 (540)
Q Consensus 294 ~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~~~~~~~-- 366 (540)
.....+.|...+. .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++ +|..+..............
T Consensus 103 ~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (231)
T 3ojm_B 103 NHTYHLDVVERSR---HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179 (231)
T ss_dssp EEEEEEEEECCCC---CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred cccEEEEEEcCCC---CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence 7777777765331 1333332 2456778899999999999999999999999 7777655443222211111
Q ss_pred -CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 367 -DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 367 -~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
......|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 180 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 221 (231)
T 3ojm_B 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP 221 (231)
T ss_dssp TCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence 11112799999999999999999999999999999999887
No 139
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.86 E-value=4.1e-21 Score=172.78 Aligned_cols=189 Identities=20% Similarity=0.345 Sum_probs=140.6
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
....+.+|+++.|.|.+.+.|.+.+.|++++..+....+........ .. ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~~~~~d~G~Y~C~~~n~~~~~ 102 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-QH---WSLIMESVVPSDKGNYTCVVENEYGSI 102 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG-GG---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeec-Cc---ceEEEecCCcccCEEEEEEEecccCcc
Confidence 45578899999999999999999999999999886543331111111 11 279999999999999999999998888
Q ss_pred EEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecccCCCeEEEEe----CCEEeeccCceEEEE---ecC
Q psy670 190 NANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK----ADKLVKESSKIKIIV---NEQ 261 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~l~~~~~~~~~~---~~~ 261 (540)
...+.|.|...+. .+|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.......... ...
T Consensus 103 ~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (231)
T 3ojm_B 103 NHTYHLDVVERSR---HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179 (231)
T ss_dssp EEEEEEEEECCCC---CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred cccEEEEEEcCCC---CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence 8888888875332 133332 23456677889999999999999999999999 777665443221111 111
Q ss_pred CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~ 305 (540)
.......|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus 180 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 223 (231)
T 3ojm_B 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223 (231)
T ss_dssp TCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred ccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCC
Confidence 11112369999999999999999999999988888888887644
No 140
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.86 E-value=7.8e-21 Score=168.47 Aligned_cols=182 Identities=12% Similarity=0.161 Sum_probs=125.5
Q ss_pred CCceeecCCC--CeEEEEEEecccCCCeEEEEeC---CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 213 KPRIIPNESG--TLIQMKCKCSAKPRPEVKWFKA---DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 213 ~~~~~~~~~g--~~~~l~C~~~~~p~~~v~W~~~---~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
.+..+.+.+| +.+.|.|.+.+ |.+.+.|++. +..+........ ... ..|.|.+++.+|+|.|+|.|.
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~--~~~-----~~l~I~~v~~~D~G~Y~C~a~ 84 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW--DSK-----KGFTIPSYMISYAGMVFCEAK 84 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEE--ETT-----TEEEEEGGGTTTCSEEEEEEC
T ss_pred CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccc--cCC-----ccEEEccCChhcCceEEEEEE
Confidence 4567888999 99999999976 7789999884 555554433222 111 158999999999999999999
Q ss_pred cCCCCeee-eEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccC--CCeEEEEECCEEccCCCceEEEEE
Q psy670 288 NEFGESNA-NLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKP--MPEIVWFHEGKELQQTDRISWNVT 363 (540)
Q Consensus 288 ~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~~~~~~ 363 (540)
+..+.... .+.+.|... .+|.+.. .+....+.+|+.++|.|.+.+.| .+.+.|+++|..+...........
T Consensus 85 n~~~~~~s~~~~l~v~~~-----~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~ 159 (213)
T 2x1w_L 85 INDESYQSIMYIVVVVGY-----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 159 (213)
T ss_dssp ----CEECCCEEEEECBC-----CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEEC
T ss_pred ECCeeEEEEEEEEEEeCC-----cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccc
Confidence 85443322 255555331 1333433 34445789999999999999865 458999999876533211000000
Q ss_pred ecC----CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 364 LKG----DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 364 ~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
... ....++|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 160 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 160 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp CCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred cccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence 000 22345899999999999999999999999999999999987
No 141
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.86 E-value=4.9e-21 Score=168.11 Aligned_cols=166 Identities=14% Similarity=0.293 Sum_probs=128.6
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+.... ..|.|.+++.+|+|.|+|.
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------~~L~i~~v~~~D~G~Y~C~ 72 (204)
T 3sgj_C 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDDSGEYRCQ 72 (204)
T ss_dssp BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------SEEEESSCCGGGCEEEEEE
T ss_pred CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------cEEEEecccccCCEEEEEE
Confidence 45566666667788999999999999987765 99999998876543 2799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEECCEEccCCCceEEEEEe
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
+.+. ..+..+.|.|.. ++.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+... .
T Consensus 73 a~n~--~~s~~~~l~V~~-------~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~--------~ 134 (204)
T 3sgj_C 73 TQLS--TLSDPVQLEVHI-------GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF--------H 134 (204)
T ss_dssp ETTS--BCCCCEEEEEEC-------SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------E
T ss_pred eCCC--cccccEEEEEec-------CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc--------c
Confidence 9874 344556677764 445555444 567789999999999765 56789999999876321 1
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEc-CCeeeEEEEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKN-FHGELNANLTLNIEMV 408 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~ 408 (540)
.+. .|.|.+++.+|+|.|+|.|.| ..+..+..+.|.|..+
T Consensus 135 ~~~----~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 135 HNS----DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG 175 (204)
T ss_dssp ECC----CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred CCc----eEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence 111 799999999999999999999 4455677788888763
No 142
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.86 E-value=1.4e-21 Score=178.63 Aligned_cols=210 Identities=18% Similarity=0.252 Sum_probs=120.9
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeC
Q psy670 170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKA 244 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~ 244 (540)
++..|+|.|+|.|. |.....+.+.+.. ++.+...+....+.+|++++|.|.+.+.| .+.+.|+++
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~-------~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 80 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWLR-------ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ 80 (254)
T ss_dssp -------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhheee-------ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence 57889999999998 3333333333332 45566667788899999999999999877 378999984
Q ss_pred C--EEee----------c--cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCC
Q psy670 245 D--KLVK----------E--SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEG 309 (540)
Q Consensus 245 ~--~~l~----------~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~ 309 (540)
+ ..+. . ..++..... .....|.|.+++.+|+|.|+|.+.+..+.. .....+.|....
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~---- 152 (254)
T 2c1o_A 81 RPGQSPKRLIYLVSKLDSGDPDRFTGSGS----GTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD---- 152 (254)
T ss_dssp CTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC----
T ss_pred CCCCCceEEEEeccccCCCccceEEEecC----CCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC----
Confidence 3 2211 0 122222211 112479999999999999999999875532 223345554321
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC---eeEEEEEEcCCCCCCCe
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD---KYHIRLEVKDPRKEDTG 384 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G 384 (540)
.+|.+...+.......|+.++|.|.+.+. |+ +.+.|+++|..+.............++ ...+.|.|.++..+|+|
T Consensus 153 ~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G 232 (254)
T 2c1o_A 153 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 232 (254)
T ss_dssp BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCC
Confidence 24555443322223357899999999984 44 469999999987654111111111111 12458999999999999
Q ss_pred eEEEEEEcCCeee
Q psy670 385 LYKCNIKNFHGEL 397 (540)
Q Consensus 385 ~Y~C~a~n~~g~~ 397 (540)
.|+|.|.|.....
T Consensus 233 ~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 233 SYTCEATHKTSTS 245 (254)
T ss_dssp EEEEEEECTTCSS
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987654
No 143
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.86 E-value=3.4e-21 Score=170.86 Aligned_cols=180 Identities=19% Similarity=0.314 Sum_probs=129.4
Q ss_pred eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCC
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..+... .. ..|.|.+++.
T Consensus 3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~------~~L~i~~v~~ 74 (212)
T 1f97_A 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SS------SGITFSSVTR 74 (212)
T ss_dssp EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ET------TEEEESCCCG
T ss_pred eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe--ec------eeEEEcccCc
Confidence 344556777888999999999999989999999998765311 112211 11 3799999999
Q ss_pred CCcEEEEEEEEcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEE-EEccCCCeEEEEECCE-Ec
Q psy670 277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK-VKAKPMPEIVWFHEGK-EL 352 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~~~p~~~i~W~~~~~-~~ 352 (540)
+|+|.|+|.+.+..| .....+.|.|... |.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+
T Consensus 75 ~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l 147 (212)
T 1f97_A 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVP-------PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML 147 (212)
T ss_dssp GGCEEEEEEEEETTSSSEEEEEEEEEEEBC-------CCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred ccCeEEEEEEEccCCCcccEEEEEEEEEcC-------CCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccc
Confidence 999999999999876 3455566666652 22222223346788999999999 7899999999999999 77
Q ss_pred cCCCce-------EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEEEE
Q psy670 353 QQTDRI-------SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNIEM 407 (540)
Q Consensus 353 ~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~ 407 (540)
...... ......... .|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 148 TADAKKTRAFMNSSFTIDPKSG----DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp C-----CBSCSSSCEEECTTTC----CEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cccccccccccCceeEecCCCc----eEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 653321 111111222 79999999999999999999999987 4556666654
No 144
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.86 E-value=1.6e-21 Score=178.21 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=116.6
Q ss_pred cccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecC-----CCceEEE
Q psy670 63 VQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASP-----MPDIIWY 137 (540)
Q Consensus 63 ~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p-----~~~v~W~ 137 (540)
++.+|+|.|+|.|. |.......+.+...+ .+.. ......+.+|++++|.|.+.+.| .+.+.|+
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~-~~~~--------~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~ 78 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWLREL-VMTQ--------SPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWL 78 (254)
T ss_dssp ------------------------------CC-CEEE--------ECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEE
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhheeece-eEEe--------CCceEEecCCCcEEEEeeccCcccccCCCCceEEE
Confidence 78999999999998 333333333222211 1110 12345788999999999998877 4799999
Q ss_pred eCC--Eee----------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcC
Q psy670 138 QGT--KVI----------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGEN 202 (540)
Q Consensus 138 ~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~ 202 (540)
|++ ..+ . ...++.... ....++|.|.+++.+|+|.|+|.+.+..+.. .....+.|....
T Consensus 79 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~- 152 (254)
T 2c1o_A 79 LQRPGQSPKRLIYLVSKLDSGDPDRFTGSG-----SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD- 152 (254)
T ss_dssp EECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC-
T ss_pred EeCCCCCceEEEEeccccCCCccceEEEec-----CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC-
Confidence 842 221 0 113333322 1123489999999999999999999876532 223355554321
Q ss_pred CCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEE-ecCCC--eEEEEEEEeCCCCC
Q psy670 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIV-NEQDD--TYEIICEITDPIGP 277 (540)
Q Consensus 203 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~-~~~~~--~~~~~l~i~~~~~~ 277 (540)
.+|.+...+.......|+.++|.|.+.+ .|+ +.+.|+++|..+.......... ....+ ...+.|.|.++..+
T Consensus 153 ---~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~ 229 (254)
T 2c1o_A 153 ---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE 229 (254)
T ss_dssp ---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH
T ss_pred ---CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEecccccc
Confidence 2455544333222335779999999988 454 4699999999876541111111 11122 23468999999999
Q ss_pred CcEEEEEEEEcCCCCe
Q psy670 278 DSGTYRCNVKNEFGES 293 (540)
Q Consensus 278 d~g~y~C~~~~~~~~~ 293 (540)
|+|.|+|.|.|.....
T Consensus 230 d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 230 RHNSYTCEATHKTSTS 245 (254)
T ss_dssp TCCEEEEEEECTTCSS
T ss_pred CCCeEEEEEEcCCCCC
Confidence 9999999999976543
No 145
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.85 E-value=8.1e-21 Score=168.39 Aligned_cols=179 Identities=23% Similarity=0.383 Sum_probs=132.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCce---EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI---KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+...... .... ..........|.|.+++.+|+|.|+|.+.+..+
T Consensus 18 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g 96 (212)
T 2v9r_A 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML-LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96 (212)
T ss_dssp CEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEE-CTTSCEEESSCCCCSSCCCSCEEEEEEEEETTE
T ss_pred ceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEE-ecCCcEEEEEEEecCCCcccCeEEEEEEECCCC
Confidence 456889999999999999999999999999887543210 0000 011112223466678899999999999999887
Q ss_pred ee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCceEEEEecCCCeE
Q psy670 188 ES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265 (540)
Q Consensus 188 ~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~ 265 (540)
.. ...+.|.|... ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...........
T Consensus 97 ~~~~~~~~l~V~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~------ 164 (212)
T 2v9r_A 97 EAVSHDASLEVAIL------RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG------ 164 (212)
T ss_dssp EEECCCEEEEECEE------CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEET------
T ss_pred ceeecceEEEEEec------cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccC------
Confidence 65 44566666542 3344455566678889999999999 8899999999999999876543322221
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcCCCCeee-eEEEEEee
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNEFGESNA-NLNLNIEA 303 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~ 303 (540)
..|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..
T Consensus 165 -~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~ 202 (212)
T 2v9r_A 165 -GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202 (212)
T ss_dssp -TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred -CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence 17999999999999999999999887554 37788776
No 146
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=166.99 Aligned_cols=167 Identities=18% Similarity=0.315 Sum_probs=133.3
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus 26 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 91 (218)
T 3k0w_A 26 ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--------------SELIFNAVHVKDAGFYVCRVNNNFTFE 91 (218)
T ss_dssp CCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS--------------SEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred CCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC--------------CEEEEccCChhhCeEeEEEEEcCCCCc
Confidence 345688999999999999999999999999998865432 189999999999999999999987654
Q ss_pred -EEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEec
Q psy670 190 -NANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260 (540)
Q Consensus 190 -~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~ 260 (540)
+..+.|.|...+.. ...+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 92 ~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~------- 164 (218)
T 3k0w_A 92 FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK------- 164 (218)
T ss_dssp ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS-------
T ss_pred eeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC-------
Confidence 55567777653210 11135666667777888999999999999999999999999988865432
Q ss_pred CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEee
Q psy670 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEA 303 (540)
Q Consensus 261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~ 303 (540)
..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus 165 ------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 165 ------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp ------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred ------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 16999999999999999999998776 45566676654
No 147
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.85 E-value=6.6e-20 Score=158.51 Aligned_cols=168 Identities=19% Similarity=0.386 Sum_probs=125.4
Q ss_pred eecCCCCeEEEEEEecccCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 217 IPNESGTLIQMKCKCSAKPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 217 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
..+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... .....|.|. +.+|+|.|+|.+.+. ..
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------~~~~~l~i~--~~~d~G~Y~C~~~n~---~~ 73 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------GQKTEFKVD--SDDQWGEYSCVFLPE---PM 73 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------CSEEEEEEC--GGGCCEEEEEEEEST---TS
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------CCcEEEEEe--chhhCeEEEEEEECC---cC
Confidence 345679999999999887666 89999999888655421 112356665 688999999999983 23
Q ss_pred eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-CCeEEEEE---CC-EEccCCCceEEEEEecCCee
Q psy670 295 ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFH---EG-KELQQTDRISWNVTLKGDKY 369 (540)
Q Consensus 295 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~---~~-~~~~~~~~~~~~~~~~~~~~ 369 (540)
..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++ ++ ..+......++....++.
T Consensus 74 ~~~~l~V~~-------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (184)
T 3b5h_A 74 GTANIQLHG-------PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG-- 144 (184)
T ss_dssp CEEEEEECC-------SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT--
T ss_pred cEEEEEEec-------CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCC--
Confidence 556677755 66666666677788999999999999999 79999999 44 444332212222223332
Q ss_pred EEEEEEcCCC-CCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 370 HIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 370 ~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
.+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|..
T Consensus 145 ~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp EEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred eeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 2389999999 8999999999999999999888888753
No 148
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.85 E-value=1.6e-20 Score=160.81 Aligned_cols=165 Identities=15% Similarity=0.282 Sum_probs=126.8
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+.... ..|.|.+++.+|+|.|+|.
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~--------------~~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC--------------SEEEESSCCGGGCEEEEEE
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCc--------------eEEEEeCCCcccCEEEEEE
Confidence 56666667766788999999999999987665 89999998876422 1799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEe
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
+.+..+ +..+.+.|.. ++.++..+ ...+.+|+.+.|.|.+.+.+++ .+.|+++|..+... .
T Consensus 73 ~~n~~~--s~~~~l~V~~-------~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~--------~ 134 (175)
T 1fnl_A 73 TNLSTL--SDPVQLEVHI-------GWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------H 134 (175)
T ss_dssp CSSSCC--CCCEEEEEEC-------SSEEEECS-CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------E
T ss_pred eeCCcc--cccEEEEEeC-------CCceeeCC-CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC--------C
Confidence 998544 4455666653 33344433 3567899999999999987665 99999999877321 1
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEM 407 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~ 407 (540)
.+. .|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus 135 ~~~----~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 135 HNS----DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp ECC----CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCC----EEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 111 7999999999999999999997654 55677777754
No 149
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.85 E-value=1.8e-20 Score=164.84 Aligned_cols=178 Identities=12% Similarity=0.144 Sum_probs=127.6
Q ss_pred CCccccCCCeEEEEEEEeecCC-----CceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 110 KPTIHQDGDLLVMECVLEASPM-----PDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~-----~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
.+..+.+|+++.|.|.+.+.|. +.+.|+| ++.......+..+..... .....+|.|.+++.+|+|.|+|.+.
T Consensus 10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~ 87 (202)
T 3bp6_B 10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQL--PLGKALFHIPSVQVRDSGQYRCLVI 87 (202)
T ss_dssp SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGG--GGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccc--cCCeeEEEECCCCHHHCcEEEEEEE
Confidence 3567889999999999988776 7899999 555444445554433211 1123489999999999999999999
Q ss_pred cCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCC
Q psy670 184 NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263 (540)
Q Consensus 184 ~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~ 263 (540)
+..+.....+.|.|..... .|.+. ...+.+|+.+.|.|.+.|+|.+.+.|++++..+... ... ...+
T Consensus 88 ~~~~~~~~~~~l~V~~~~~----~p~~~----~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~----~~~-~~~~ 154 (202)
T 3bp6_B 88 CGAAWDYKYLTVKVKASYM----RIDTR----ILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS----HIR-TPEG 154 (202)
T ss_dssp ETTEEEEEEEEEEEEBCCC----CEEEE----EEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEE----EEE-CTTS
T ss_pred eCCCcceEEEEEEecCCCC----cccEE----EEecCCCCeEEEEEEccccCCceEEEEeCCCCccCc----eee-CCCC
Confidence 9988888888888875221 22221 124568999999999999999999999988754321 111 1222
Q ss_pred eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 264 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
. ...+.+.++..+|.|.|+|.|.|..|.....+.+.|..
T Consensus 155 ~-~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 155 L-YQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp C-EEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC--
T ss_pred C-EEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecC
Confidence 2 23566778888999999999999999888887777654
No 150
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.85 E-value=4.6e-20 Score=161.23 Aligned_cols=183 Identities=16% Similarity=0.221 Sum_probs=128.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|++++..+..... ..........|.|.+++.+|+|.|+|.+
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-----NPLEPKNKARFSIPSMTEDYAGRYRCYY 77 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-----CCCSSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-----ccccCCceEEEEeccCCcccCceEEEEE
Confidence 5566655655 6778999999999988 6789999999987643211 0011122357999999999999999999
Q ss_pred EcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 287 KNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 287 ~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
.|..+ ..+..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+++|..+...........
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~----~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~- 150 (196)
T 3p2t_A 78 RSPVGWSQPSDPLELVMTGAY----SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGA- 150 (196)
T ss_dssp EETTEEBCCCCCEEEEEECSS----CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEE-
T ss_pred eCCCcccCCCccEEEEecCCC----CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccc-
Confidence 99877 33556677775432 14555554443 67899999999999874 458999999987754332211111
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-----eeEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-----ELNANLTLNI 405 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V 405 (540)
......|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 151 --~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 151 --QQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp --EEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred --cCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 11233899999999999999999999876 2334455554
No 151
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.84 E-value=2.1e-20 Score=165.72 Aligned_cols=174 Identities=17% Similarity=0.314 Sum_probs=127.0
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 177 (540)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+ ....+..... ..|.|.+++.+|+|.
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---------~~L~i~~v~~~D~G~ 79 (212)
T 1f97_A 9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS---------SGITFSSVTRKDNGE 79 (212)
T ss_dssp SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET---------TEEEESCCCGGGCEE
T ss_pred CCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec---------eeEEEcccCcccCeE
Confidence 3456889999999999998899999999977552 1123333221 289999999999999
Q ss_pred EEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEE-ecccCCCeEEEEeCCE-EeeccCc
Q psy670 178 YRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADK-LVKESSK 253 (540)
Q Consensus 178 Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~-~l~~~~~ 253 (540)
|+|.+.+..| .....+.|.|.. +|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+.....
T Consensus 80 Y~C~~~~~~g~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~ 152 (212)
T 1f97_A 80 YTCMVSEEGGQNYGEVSIHLTVLV-------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152 (212)
T ss_dssp EEEEEEETTSSSEEEEEEEEEEEB-------CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred EEEEEEccCCCcccEEEEEEEEEc-------CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence 9999999866 456777788875 333333233345678999999999 6889999999999998 7765332
Q ss_pred e-------EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe--eeeEEEEEee
Q psy670 254 I-------KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES--NANLNLNIEA 303 (540)
Q Consensus 254 ~-------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l~v~~ 303 (540)
. ........ ..|.|.+++.+|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 153 KTRAFMNSSFTIDPKS----GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp -CBSCSSSCEEECTTT----CCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccccccCceeEecCCC----ceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 1 11111111 269999999999999999999999987 4455555543
No 152
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.84 E-value=1.2e-20 Score=161.89 Aligned_cols=166 Identities=16% Similarity=0.292 Sum_probs=125.4
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
+|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+.... ..|.|.+++.+|+|.|+|.
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~ 69 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAKFEDSGEYKCQ 69 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS--------------SEEEECSCCGGGCEEEEEE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCc--------------eEEEEeccceecCEEEEEE
Confidence 5666666777778899999999999987775 699999998876432 2799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
+.+..+. ..+.+.|.. ++.+...+ ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+.....
T Consensus 70 ~~~~~~s--~~~~l~V~~-------~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~------- 132 (176)
T 1f2q_A 70 HQQVNES--EPVYLEVFS-------DWLLLQAS-AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE------- 132 (176)
T ss_dssp CTTSSCC--CCEEEEEEC-------SSEEEEES-CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC-------
T ss_pred cCCcccc--ccEEEEEeC-------cceeecCC-cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecC-------
Confidence 9886543 445566652 33343333 34677999999999995 566779999999998853221
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-eeEEEEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-ELNANLTLNIEMV 408 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~ 408 (540)
+. .|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|..+
T Consensus 133 -~~----~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 172 (176)
T 1f2q_A 133 -NH----NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA 172 (176)
T ss_dssp -SS----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred -CC----eEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence 11 799999999999999999999654 4456678887763
No 153
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.84 E-value=2.7e-20 Score=165.65 Aligned_cols=179 Identities=22% Similarity=0.431 Sum_probs=134.8
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+.............++.....|.|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 47888888888899999999999999999999999999999987653222222233333333457889999999999999
Q ss_pred EEcCCeee-EEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecC
Q psy670 390 IKNFHGEL-NANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISK 468 (540)
Q Consensus 390 a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 468 (540)
+.|..|.. .....|.|... +|.+...+....+.+
T Consensus 88 ~~n~~g~~~~~~~~l~v~~~---------------------------------------------~~~~~~~~~~~~~~~ 122 (217)
T 2vr9_A 88 AKNRVGQAVSRHASLQIAVL---------------------------------------------RDDFRVEPKDTRVAK 122 (217)
T ss_dssp EEETTEEEECCCEEEEECEE---------------------------------------------CCSCSBCCCCEEECT
T ss_pred EecCCCccccccceEEEEEe---------------------------------------------CCCcEECCCccEEcC
Confidence 99998865 34566666541 445555566778899
Q ss_pred CCeEEEEEEE-eeecCCceEEEecCeecCC--------CCeE------EE---EEEecCCeEEEEEEeeeeeeeeCCeeE
Q psy670 469 KKTVVIECKV-MSMYEPSVTWMKEKNTVKE--------DNKH------VV---HIEQVKDVSMNFELWLGIVEKRGPSIK 530 (540)
Q Consensus 469 g~~~~l~C~v-~g~p~~~v~W~~~~~~l~~--------~~~~------~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~ 530 (540)
|+.++|.|.+ .|.|.+.++|+++|..+.. ..+. .+ .+...|.|.|+|.+.............
T Consensus 123 g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~ 202 (217)
T 2vr9_A 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK 202 (217)
T ss_dssp TSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEE
T ss_pred CCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEE
Confidence 9999999999 8999999999999998872 2221 12 345578999999999877666665554
Q ss_pred EEE
Q psy670 531 IIY 533 (540)
Q Consensus 531 ~~~ 533 (540)
+++
T Consensus 203 lv~ 205 (217)
T 2vr9_A 203 LIV 205 (217)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 154
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.84 E-value=8.1e-20 Score=157.97 Aligned_cols=165 Identities=19% Similarity=0.371 Sum_probs=124.5
Q ss_pred ccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 112 TIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
..+.+|++++|.|.+.+.|.+ .+.|+|++..+........ ...|.|. +.+|+|.|+|.+.+..
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~----------~~~l~i~--~~~d~G~Y~C~~~n~~--- 72 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----------KTEFKVD--SDDQWGEYSCVFLPEP--- 72 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS----------EEEEEEC--GGGCCEEEEEEEESTT---
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCC----------cEEEEEe--chhhCeEEEEEEECCc---
Confidence 456789999999999887777 8999999998865532211 2256666 6899999999999832
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEe---CCEE-eecc--CceEEEEecCC
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFK---ADKL-VKES--SKIKIIVNEQD 262 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~~-l~~~--~~~~~~~~~~~ 262 (540)
...+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++ ++.. +... .++.+... .
T Consensus 73 ~~~~~l~V~~-------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~ 143 (184)
T 3b5h_A 73 MGTANIQLHG-------PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS--Q 143 (184)
T ss_dssp SCEEEEEECC-------SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE--T
T ss_pred CcEEEEEEec-------CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec--C
Confidence 2456677764 66676666677788999999999999998 79999999 4544 3322 33333221 1
Q ss_pred CeEEEEEEEeCCC-CCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 263 DTYEIICEITDPI-GPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 263 ~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
....|.|.+++ .+|.|.|+|.|.|..|.....+.|.|.
T Consensus 144 --~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 144 --GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp --TEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred --CeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence 12479999999 899999999999999988877777764
No 155
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.84 E-value=3.9e-20 Score=162.10 Aligned_cols=176 Identities=20% Similarity=0.276 Sum_probs=121.5
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCC-EeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGT-KVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+.+|++++|.|.+.|.|.+.+.|+++. ..+. ...... + . ...|.|.+++.+|+|.|+|.+.|..+...
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~~~~~----~-~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~ 81 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTNE----G-T--TSTLTMNPVSFGNEHSYLCTATCESRKLE 81 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEEE----T-T--EEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ceEEEc----C-C--ccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence 34569999999999999999999999843 2221 111110 1 1 23799999999999999999999988888
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC--CeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR--PEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (540)
..+.|.|...+. .+.+. +. ..+.+|+.++|.|.+.+. |. +.+.|++++..+..................+
T Consensus 82 ~~~~l~V~~~p~----~~~~~--~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~ 154 (202)
T 1vca_A 82 KGIQVEIYSFPK----DPEIH--LS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSL 154 (202)
T ss_dssp EEEEEEEEBCCS----CCEEE--ES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEE
T ss_pred eEEEEEEEeCCC----CCEeC--Cc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEE
Confidence 888898886322 12222 12 456789999999999874 43 3799999998875431100000000123345
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCC-------eeeeEEEEEee
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGE-------SNANLNLNIEA 303 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~-------~~~~~~l~v~~ 303 (540)
.|.|.....+|.|.|+|.|.|..+. ...++.|.|.+
T Consensus 155 ~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 155 EVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp EEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred EEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence 6788888888999999999998765 24456666665
No 156
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=164.68 Aligned_cols=178 Identities=17% Similarity=0.251 Sum_probs=131.9
Q ss_pred CCccccCCCeEEEEEE-EeecCC-CceEEEeCCEeecC--CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 110 KPTIHQDGDLLVMECV-LEASPM-PDIIWYQGTKVIED--TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~-~~~~p~-~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
....+.+|+.+.|.|. +.+.|. +.+.|++++..+.. ..+.... ..+ ..|.|.+++.+|+|.|+|.+.+.
T Consensus 16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~----~~~---~~L~i~~v~~~d~G~Y~C~~~~~ 88 (201)
T 3s97_C 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS----QTN---GNLYIANVEASDKGNYSCFVSSP 88 (201)
T ss_dssp CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEEC----TTT---CCEEESSCCGGGCEEEEEEEEEG
T ss_pred ceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEE----cCC---CeEEECcCCcccCeEEEEEEEec
Confidence 4567899999999999 788888 89999999877642 2222111 111 27999999999999999999986
Q ss_pred CceeE---EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCC
Q psy670 186 IGESN---ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262 (540)
Q Consensus 186 ~~~~~---~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~ 262 (540)
.+... ..+.+.+.........+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... . ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~--~--~~~ 164 (201)
T 3s97_C 89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI--S--TSG 164 (201)
T ss_dssp GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEE--E--TTT
T ss_pred CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceee--c--CCC
Confidence 65443 2344444432222233555655555677889999999999999999999999999877644221 1 111
Q ss_pred CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 263 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
..|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus 165 ----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 165 ----AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp ----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 279999999999999999999999988888877774
No 157
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.84 E-value=8.7e-20 Score=160.38 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=126.2
Q ss_pred cCCceeecCCCCeEEEEEEecccCC-----CeEEEEeCCEE-eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 212 EKPRIIPNESGTLIQMKCKCSAKPR-----PEVKWFKADKL-VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 212 ~~~~~~~~~~g~~~~l~C~~~~~p~-----~~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
..+..+.+.+|+++.|.|.+.+.|. +.+.|++.+.. .....+..+... ........|.|.+++.+|+|.|+|.
T Consensus 7 ~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~ 85 (202)
T 3bp6_B 7 APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE-QLPLGKALFHIPSVQVRDSGQYRCL 85 (202)
T ss_dssp CSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGG-GGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred cCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeec-cccCCeeEEEECCCCHHHCcEEEEE
Confidence 3445667889999999999998876 78999994433 332333332111 1111234899999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
+.+..+.....+.|.|...+ ..|.+. ...+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .....
T Consensus 86 ~~~~~~~~~~~~~l~V~~~~----~~p~~~----~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~------~~~~~ 151 (202)
T 3bp6_B 86 VICGAAWDYKYLTVKVKASY----MRIDTR----ILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT------SHIRT 151 (202)
T ss_dssp EEETTEEEEEEEEEEEEBCC----CCEEEE----EEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEE------EEEEC
T ss_pred EEeCCCcceEEEEEEecCCC----CcccEE----EEecCCCCeEEEEEEccccCCceEEEEeCCCCccC------ceeeC
Confidence 99988877777777776532 122221 12456799999999999999999999998765421 11112
Q ss_pred CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
.......+.+..+..+|.|.|+|.|.|..|....++.|.|..
T Consensus 152 ~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 152 PEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp TTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC--
T ss_pred CCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecC
Confidence 222223566777888999999999999999998888887765
No 158
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.83 E-value=3.4e-20 Score=162.73 Aligned_cols=156 Identities=20% Similarity=0.280 Sum_probs=120.0
Q ss_pred ccccCCCeEEEEEEEeecCCCc-eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+.+|++++|.|.+.+.|.+. +.|+|+|..+.... ..|.|.+++.+|+|.|+|.+.+. ..+
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~---------------~~L~i~~v~~~D~G~Y~C~a~n~--~~s 79 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA---------------SSYFIDAATVDDSGEYRCQTQLS--TLS 79 (204)
T ss_dssp SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS---------------SEEEESSCCGGGCEEEEEEETTS--BCC
T ss_pred eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc---------------cEEEEecccccCCEEEEEEeCCC--ccc
Confidence 4688999999999998888775 99999999886543 18999999999999999999874 334
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
..+.|.|.. +|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+..... ...|
T Consensus 80 ~~~~l~V~~-------~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~------------~~~L 139 (204)
T 3sgj_C 80 DPVQLEVHI-------GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH------------NSDF 139 (204)
T ss_dssp CCEEEEEEC-------SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE------------CCCE
T ss_pred ccEEEEEec-------CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccC------------CceE
Confidence 456666664 444443333 556789999999999764 6678999999988643211 1269
Q ss_pred EEeCCCCCCcEEEEEEEEcC-CCCeeeeEEEEEeec
Q psy670 270 EITDPIGPDSGTYRCNVKNE-FGESNANLNLNIEAE 304 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~l~v~~~ 304 (540)
.|.+++.+|+|.|+|.|.|. .+..+..+.|.|...
T Consensus 140 ~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 140 YIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG 175 (204)
T ss_dssp EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred EECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence 99999999999999999994 444566677777654
No 159
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.83 E-value=5.1e-20 Score=161.36 Aligned_cols=176 Identities=12% Similarity=0.145 Sum_probs=120.7
Q ss_pred eecCCCCeEEEEEEecccCCCeEEEEeCC-EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670 217 IPNESGTLIQMKCKCSAKPRPEVKWFKAD-KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 217 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 295 (540)
..+.+|+.+.|.|.+.|.|.+.+.|++.. ..+. .. .... . . ...|.|.+++.+|+|.|+|.|.|..+..+.
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~--~~~~-~-~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~ 82 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GK--VTNE-G-T--TSTLTMNPVSFGNEHSYLCTATCESRKLEK 82 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SE--EEEE-T-T--EEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ce--EEEc-C-C--ccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence 34458999999999999999999999843 2111 11 1111 1 1 236999999999999999999998887777
Q ss_pred eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccCCCceEEEEEecCCeeEEE
Q psy670 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372 (540)
Q Consensus 296 ~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
.+.|.|...+. .+.+.. . ..+.+|+.++|.|.+.+.++ +.|.|++++..+..................+.
T Consensus 83 ~~~l~V~~~p~----~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (202)
T 1vca_A 83 GIQVEIYSFPK----DPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLE 155 (202)
T ss_dssp EEEEEEEBCCS----CCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEE
T ss_pred EEEEEEEeCCC----CCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEE
Confidence 77888876321 122222 2 45789999999999998543 37999999987743210000000000122346
Q ss_pred EEEcCCCCCCCeeEEEEEEcCCee-------eEEEEEEEEEE
Q psy670 373 LEVKDPRKEDTGLYKCNIKNFHGE-------LNANLTLNIEM 407 (540)
Q Consensus 373 L~i~~~~~~d~G~Y~C~a~n~~g~-------~~~~~~l~V~~ 407 (540)
|.|.....+|.|.|+|+|.|..+. ...++.|.|..
T Consensus 156 l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 156 VTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp EEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred EEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence 788888888899999999998765 35667777776
No 160
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.83 E-value=6.9e-20 Score=167.72 Aligned_cols=255 Identities=15% Similarity=0.200 Sum_probs=106.7
Q ss_pred CccccCCCeEEEEEEEeecCCCc-eEEEeC--CEee-cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPD-IIWYQG--TKVI-EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
...+.+|+++.|+|.+. .+.+. +.|.-. ...+ ..+. ....|.|.+++.+ |.|+|.+....
T Consensus 8 ~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~~g~-------------~~~~~~l~~v~~~--~~y~C~~~~~~ 71 (291)
T 1mq8_A 8 KVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLLPGN-------------NRKVYELSNVQED--SQPMCYSNCPD 71 (291)
T ss_dssp EEEECTTCEEEEEEEEC-CSSCSEEEEECSSCCCCCCCSCS-------------SEEEEEEESCCSC--CCCEEEEECSS
T ss_pred ccEEcCCCeEEEEEeCC-CCCCccceEEecCCCcccccCCC-------------ceEEEEEEecccC--CeEEEEEEcCC
Confidence 35788999999999995 45554 888531 1111 1111 1115788888754 46999997655
Q ss_pred ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCC
Q psy670 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDD 263 (540)
Q Consensus 187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~ 263 (540)
......+.|.|...+. .+.+. +....+.+|+.++|.|.+.+ .|.. +|+|++++..+..... ...
T Consensus 72 ~~~~~~v~l~V~~~P~----~v~I~--~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-------~~~ 138 (291)
T 1mq8_A 72 GQSTAKTFLTVYWTPE----RVELA--PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGE 138 (291)
T ss_dssp CEEEEECEEEECBCCS----CCCBC--CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-------CBT
T ss_pred ccEEEEEEEEEecCCC----CCEEe--cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-------CCC
Confidence 4567778888886443 22222 22244778999999999987 5654 5899999988754331 112
Q ss_pred eEEEEEEEeCCCCCCcEEEEEEEEcCCCC--------eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670 264 TYEIICEITDPIGPDSGTYRCNVKNEFGE--------SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV 335 (540)
Q Consensus 264 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~ 335 (540)
....++.+...+.++.+.|+|+|.+..+. .+....+.|.+.+.. .+.+. .+ ..+.+|+.++|+|.+
T Consensus 139 ~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~---~~~~~-~p--~~l~eG~~v~l~C~~ 212 (291)
T 1mq8_A 139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT---PPQLV-SP--RVLEVDTQGTVVCSL 212 (291)
T ss_dssp TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------------
T ss_pred CceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC---Cceec-CC--cCccCCCeEEEEEEc
Confidence 23456777777777778999999987542 244456666653211 12221 12 257789999999999
Q ss_pred EccCCC---eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC--CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 336 KAKPMP---EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK--EDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 336 ~~~p~~---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
.|.+++ .+.|+++|..+..... .+++...+++.+.. .. ++.+.|+|.|.|..........|.|..
T Consensus 213 ~g~~P~~~~~v~w~~~g~~l~~~~~------~~g~~~~~~~~~~~-~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 213 DGLFPVSEAQVHLALGDQRLNPTVT------YGNDSFSAKASVSV-TAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCCCCcccEEEEEECCEecCceee------ecCCeEEEEEecce-eEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence 997554 5899999998865321 12332222333221 23 335678899987655566677777765
No 161
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.83 E-value=1.3e-19 Score=158.69 Aligned_cols=185 Identities=16% Similarity=0.245 Sum_probs=122.5
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+. ..+.+|+.++|.|.+.+.|. .+.|++++..+........ ..... ..|.|.+++.+|+|.|+|.+
T Consensus 5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~-~~~~~----~~L~i~~v~~~D~G~Y~C~a 77 (198)
T 1ugn_A 5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQ-ELVKK----GQFPIPSITWEHTGRYRCYY 77 (198)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCH-HHHTT----TEEEESSCCGGGCEEEEEEE
T ss_pred CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccc-cCCcc----cEEEECCCCHHHCeEEEEEE
Confidence 566665555 36779999999999988765 7999999987642211000 00011 26999999999999999999
Q ss_pred EcCC-C--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEE
Q psy670 287 KNEF-G--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT 363 (540)
Q Consensus 287 ~~~~-~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 363 (540)
.|.. + ..+..+.|.|...+ .+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+...... ....
T Consensus 78 ~n~~~g~~~~s~~~~l~V~~~~----~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~-~~~~ 150 (198)
T 1ugn_A 78 GSDTAGRSESSDPLELVVTGAY----IKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLN-SQPH 150 (198)
T ss_dssp EETTTEECCCCCCEEEEEECSS----CCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEE-C---
T ss_pred ECCCCCcccCCccEEEEEcccc----cCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccc-cccc
Confidence 9976 4 33556777776522 144554443 3567899999999999888 7899999999877432211 0011
Q ss_pred ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-----eEEEEEEEEE
Q psy670 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-----LNANLTLNIE 406 (540)
Q Consensus 364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~ 406 (540)
.. ......|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 151 ~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 151 AR-GSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp ----CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred CC-CcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 11 111238999999999999999999998652 1445555553
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.83 E-value=7.4e-21 Score=182.13 Aligned_cols=175 Identities=18% Similarity=0.252 Sum_probs=134.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~ 189 (540)
...+.+|+.+.|.|.+.|.|.+.+.|++++..+...... .......+|.|.+++.+|+| .|+|.+.+..|..
T Consensus 167 ~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~ 239 (347)
T 2ifg_A 167 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA 239 (347)
T ss_dssp SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCCEEECCEETTEEC
T ss_pred ceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-------ceecccceEEEeeCChHHCCCeEEEEEEcCCCCE
Confidence 456789999999999999999999999988654321110 01122348999999999999 9999999999888
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEec---CCCeEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE---QDDTYE 266 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~---~~~~~~ 266 (540)
...+.|.|.. +|.+ ......+|+.+.|.|.+.|.|.+.+.|+++|..+............ ......
T Consensus 240 ~~~~~l~V~~-------~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 308 (347)
T 2ifg_A 240 EVSVQVNVSF-------PASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 308 (347)
T ss_dssp CEEECCCCBE-------EEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEE
T ss_pred EEEEEEEEcC-------CCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccc
Confidence 7777777764 4543 1223456899999999999999999999999998865544433222 222345
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
.+|.|.+++.+|+|.|+|.|.|..|....++.+.|..
T Consensus 309 ~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 309 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred eEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence 6899999999999999999999999887777776654
No 163
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=159.36 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=114.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+.. .+.+|++++|.|.+.+.|. .+.|++++..+..... ..........|.|.+++.+|+|.|+|.+
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 2d3v_A 5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-----NPLEPKNKARFSIPSMTEHHAGRYRCYY 77 (196)
T ss_dssp BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-----CCCSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-----cccCCccccEEEeccCChhHCeEEEEEE
Confidence 5666655553 6779999999999988765 9999999987643211 0011122347999999999999999999
Q ss_pred EcCCCCe--eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 287 KNEFGES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 287 ~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
.|..+.. +..+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+....... ...
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~----~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~--~~~ 149 (196)
T 2d3v_A 78 YSPAGWSEPSDPLELVVTGFY----NKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDS--QLT 149 (196)
T ss_dssp EETTEECBCCCCEEEEEECSS----CCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEEC--EEC
T ss_pred eCCCCcCCcCccEEEEecCCC----CCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccccc--ccc
Confidence 9876532 345667776522 145554443 34678999999999999988 8999999998774321110 011
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
..+.....|.|.+++.+|+|.|+|.|.|..+.
T Consensus 150 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 150 PSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp TTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred cCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 11223348999999999999999999998753
No 164
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.83 E-value=6.9e-20 Score=162.36 Aligned_cols=179 Identities=11% Similarity=0.143 Sum_probs=122.9
Q ss_pred CccccCC--CeEEEEEEEeecCCCceEEEeC---CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 111 PTIHQDG--DLLVMECVLEASPMPDIIWYQG---TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 111 ~~~v~~G--~~v~l~C~~~~~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
.+.+.+| ++++|.|.+.+ |.+.+.|+++ +..+....+..... .. .|.|.+++.+|+|.|+|.+.+.
T Consensus 16 ~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~-----~~---~l~I~~v~~~D~G~Y~C~a~n~ 86 (213)
T 2x1w_L 16 VVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDS-----KK---GFTIPSYMISYAGMVFCEAKIN 86 (213)
T ss_dssp EEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEET-----TT---EEEEEGGGTTTCSEEEEEEC--
T ss_pred EEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccC-----Cc---cEEEccCChhcCceEEEEEEEC
Confidence 4567899 99999999965 7789999884 66665543333221 11 6999999999999999999885
Q ss_pred Ccee-EEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEecccC--CCeEEEEeCCEEeeccCceEEEEecC
Q psy670 186 IGES-NANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKADKLVKESSKIKIIVNEQ 261 (540)
Q Consensus 186 ~~~~-~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~l~~~~~~~~~~~~~ 261 (540)
.+.. +..+.|.|... .+|.+.. .+....+.+|+.++|.|.+.+.| .+.+.|++++..+.............
T Consensus 87 ~~~~~s~~~~l~v~~~-----~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~ 161 (213)
T 2x1w_L 87 DESYQSIMYIVVVVGY-----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 161 (213)
T ss_dssp --CEECCCEEEEECBC-----CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCC
T ss_pred CeeEEEEEEEEEEeCC-----cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccc
Confidence 4433 22366666431 1333333 33444788999999999999854 45799999887643221100011101
Q ss_pred C----CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 262 D----DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 262 ~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
. .....+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 162 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp SSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred cCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence 1 23345899999999999999999999999888888888875
No 165
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.83 E-value=1.3e-19 Score=162.22 Aligned_cols=181 Identities=16% Similarity=0.261 Sum_probs=118.5
Q ss_pred CCCccccCCCeEEEEEEEeecCCC---ceEEEeCCEee-----------cC------CCceEEEEeecCcceEEEEEEEc
Q psy670 109 KKPTIHQDGDLLVMECVLEASPMP---DIIWYQGTKVI-----------ED------TGRIKMSKKSIGKDTYLLRLEIN 168 (540)
Q Consensus 109 ~~~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~L~i~ 168 (540)
..++.+.+|++++|.|.+.+.+.+ .|.|+|++... .. ..+..... ........+|.|.
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L~I~ 88 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR--DGITAGKAALRIH 88 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEEC--TTGGGTEEEEEES
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEec--ccccCCeEEEEEe
Confidence 345778899999999999766554 69999976321 10 11122111 1222334589999
Q ss_pred CCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEE
Q psy670 169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKL 247 (540)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~ 247 (540)
+++.+|+|.|+|.+.|..+.....+.+.+.. .+...+....+.+|+.+.|.|.+.+ .|.+.|+|++++..
T Consensus 89 ~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~ 159 (226)
T 4f80_A 89 NVTASDSGKYLCYFQDGDFYEKALVELKVAA---------LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE 159 (226)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEB---------CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred eCchHHCeeEEEEEECCCcEEEEEEEEeecc---------ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence 9999999999999999888777666665542 1222233455668999999999988 69999999997654
Q ss_pred eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
+........... ..+.+ ..+.+.+++.+|.|.|+|.|.|..|....++.|.|.
T Consensus 160 ~~~~~~~~~~~~-~~g~~-~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ 212 (226)
T 4f80_A 160 NIPTVEAPVVAD-GVGLY-AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA 212 (226)
T ss_dssp BCCCEECCCEEC-TTSCE-EEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred EcCCCceEEEEC-CCCcE-EEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence 433322222222 22222 123344567789999999999999988888777764
No 166
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.82 E-value=1.3e-19 Score=154.44 Aligned_cols=163 Identities=16% Similarity=0.318 Sum_probs=122.8
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+..... .+.+.+++.+|+|.|+|.
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~d~G~Y~C~ 69 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTCQ 69 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEEE
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc--------------ceEEEecccccCeEEEEE
Confidence 45555566666778999999999999876 678999999998865432 355678999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
+.+... ...+.+.|.. ++.+...+ ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+....
T Consensus 70 ~~~~~~--s~~~~l~v~~-------~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------- 131 (170)
T 3ry4_A 70 TGQTSL--SDPVHLTVLF-------EWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-------- 131 (170)
T ss_dssp ETTSBC--CCCEEEEEEC-------CSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES--------
T ss_pred EeCCCc--eEeEEEEEEC-------CceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC--------
Confidence 997533 3455666654 33444433 34677899999999995 45668999999998764211
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNI 405 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V 405 (540)
.+. .|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 132 ~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 132 LDP----TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp SCC----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCC----eEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 111 7999999999999999999999986 455566655
No 167
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.82 E-value=1.2e-19 Score=165.26 Aligned_cols=187 Identities=12% Similarity=0.259 Sum_probs=125.3
Q ss_pred CCceeecCCCCeEEEEEEecc---cCCCeEEEEeCCEEeeccCceE-------------------EEEecCCCe------
Q psy670 213 KPRIIPNESGTLIQMKCKCSA---KPRPEVKWFKADKLVKESSKIK-------------------IIVNEQDDT------ 264 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~---~p~~~v~W~~~~~~l~~~~~~~-------------------~~~~~~~~~------ 264 (540)
.+..+.+.+|+.+.|.|.+.+ .|.+.+.|++++........+. .......+.
T Consensus 8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 87 (250)
T 2fbo_J 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL 87 (250)
T ss_dssp SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT
T ss_pred CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC
Confidence 445677889999999999987 7888999999874321000000 000000000
Q ss_pred EEEEEEEeCCCCCCcEEEEEEEEcCCCCe-----eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC
Q psy670 265 YEIICEITDPIGPDSGTYRCNVKNEFGES-----NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339 (540)
Q Consensus 265 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p 339 (540)
....|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|...+.+ +...+..+....+.+|+.+.|.|.+.+.|
T Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~---~~~~~~~~~~~~v~~g~~v~L~C~~~g~p 164 (250)
T 2fbo_J 88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPS---NNVHVSTAEVVQVDEGNDITMTCPCTDCA 164 (250)
T ss_dssp TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCC---SCCEECCCSEEECCTTCCEEECCCEESCT
T ss_pred CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCC---CeEEEecCceEEecCCCcEEEEEEecCCC
Confidence 01369999999999999999999976643 34566666553211 22223344566777899999999999999
Q ss_pred CCeEEEEECCEEccCCCceEEE--------------------EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC---Cee
Q psy670 340 MPEIVWFHEGKELQQTDRISWN--------------------VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF---HGE 396 (540)
Q Consensus 340 ~~~i~W~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~---~g~ 396 (540)
.|.+.|++++..+......... ....+. ..|.|.+++.+|+|.|+|.|.|. .|.
T Consensus 165 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~ 241 (250)
T 2fbo_J 165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA---RNLVIRAAKITDAGRVWCELATGQGELDA 241 (250)
T ss_dssp TCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETT---TEEEECSCCGGGCEEEEEEEESSSSGGGE
T ss_pred CCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCc---cEEEEecCCcccCEEEEEEecCCccccCc
Confidence 9999999999877553311100 000011 28999999999999999999994 445
Q ss_pred eEEEEEEEE
Q psy670 397 LNANLTLNI 405 (540)
Q Consensus 397 ~~~~~~l~V 405 (540)
...++.|.|
T Consensus 242 ~~~~~~l~V 250 (250)
T 2fbo_J 242 DRSSTILKV 250 (250)
T ss_dssp EEEEEEEEC
T ss_pred cceeEEEeC
Confidence 555555543
No 168
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.82 E-value=4.1e-20 Score=164.01 Aligned_cols=175 Identities=21% Similarity=0.355 Sum_probs=126.8
Q ss_pred CccccCCCeEEEEEEEeecC----CCceEEEe----------------CCEeecC-----CCceEEEEeecCcceEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEASP----MPDIIWYQ----------------GTKVIED-----TGRIKMSKKSIGKDTYLLRL 165 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p----~~~v~W~~----------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~L 165 (540)
...+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ..+..+.... ......+|
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L 86 (214)
T 3jz7_A 9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSND--VKSGDASI 86 (214)
T ss_dssp EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSC--GGGTBCCE
T ss_pred eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccC--ccCCcccE
Confidence 45688999999999998776 45899998 3333321 2233322100 01112379
Q ss_pred EEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeC
Q psy670 166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKA 244 (540)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~ 244 (540)
.|.+++.+|+|.|+|.+.+..+.....+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+++
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~ 159 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-------KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL 159 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-------CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred EEccCChhhCeEEEEEEEeCCCccccEEEEEEEc-------CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence 9999999999999999999988888888899886 4443333344457789999999999 7899999999995
Q ss_pred C--EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 245 D--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 245 ~--~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
+ ..+....... ... ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 160 ~~~~~~~~~~~~~----~~~----~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 160 SDSQTMPTPWLAE----MTS----PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp STTCCCCGGGGGG----TTS----SEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred CCCCccCccceec----cCC----CEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 4 3333221110 011 179999999999999999999999988777777765
No 169
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.82 E-value=1.2e-20 Score=167.49 Aligned_cols=178 Identities=20% Similarity=0.342 Sum_probs=125.6
Q ss_pred CceeecCCCCeEEEEEEecccC----CCeEEEEeC----------------CEEeec-----cCceEEEEecCCCeEEEE
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP----RPEVKWFKA----------------DKLVKE-----SSKIKIIVNEQDDTYEII 268 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~----------------~~~l~~-----~~~~~~~~~~~~~~~~~~ 268 (540)
+..+.+.+|+.+.|.|.+.+.+ .+.+.|+++ +..+.. ..+..+... ........
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~ 85 (214)
T 3jz7_A 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN-DVKSGDAS 85 (214)
T ss_dssp EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCS-CGGGTBCC
T ss_pred CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEecc-CccCCccc
Confidence 4466778999999999998866 468999983 332221 111111100 00111236
Q ss_pred EEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEE
Q psy670 269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFH 347 (540)
Q Consensus 269 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~ 347 (540)
|.|.+++.+|+|.|+|.+.+..+.....+.|.|... |.+...+....+..|+.+.|.|.+ .+.|.+.+.|++
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~ 158 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-------PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQK 158 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-------CBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEE
T ss_pred EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC-------CCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEE
Confidence 999999999999999999998887777788888663 222222222336789999999999 899999999999
Q ss_pred CCE--EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 348 EGK--ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 348 ~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
++. .+...... ...+. .|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 159 ~~~~~~~~~~~~~----~~~~~----~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 159 LSDSQTMPTPWLA----EMTSP----VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp CSTTCCCCGGGGG----GTTSS----EEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred CCCCCccCcccee----ccCCC----EEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 543 33322111 01122 899999999999999999999999998888888764
No 170
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.82 E-value=1.8e-19 Score=159.76 Aligned_cols=185 Identities=11% Similarity=0.205 Sum_probs=127.6
Q ss_pred eccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCC
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~ 275 (540)
+...+ ...+.+|+.++|.|.+.+.|.+.+.|++. +.... ...++.... ......|.|.+++
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~ 78 (213)
T 3mj8_L 4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN----SGNMATLTISKAQ 78 (213)
T ss_dssp BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe----cCCEEEEEECCCC
Confidence 34445 77788999999999999999999999982 22111 111222221 1123479999999
Q ss_pred CCCcEEEEEEEEcCCC---CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCE
Q psy670 276 GPDSGTYRCNVKNEFG---ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGK 350 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~ 350 (540)
.+|+|.|+|.+.+..+ .......|.|...+ ..+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|.
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~ 155 (213)
T 3mj8_L 79 AGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQP---NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGT 155 (213)
T ss_dssp GGGCEEEEEEEEETTTTEEEEBCCEEEEEECSC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred hhhCEEEEEEeccCCcceeEEcCceEEEEeCCC---CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCc
Confidence 9999999999999877 34455667776421 126666655544445589999999999985 44 4999999999
Q ss_pred EccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 351 ELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
.+............++. ...+.|.|..+..+|+|.|+|.|.|..+...+++.
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 156 PITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp EECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred ccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 88653221111111111 12347999999999999999999999987766654
No 171
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.82 E-value=7.4e-21 Score=168.21 Aligned_cols=180 Identities=18% Similarity=0.299 Sum_probs=129.0
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec------------cCceEEEEecCCCeEEEEEEEeCC
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE------------SSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..+... .. ..|.|.++
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~------~~L~i~~~ 75 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF--LP------TGITFKSV 75 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE--ET------TEEECSCC
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe--ec------cEEEEeeC
Confidence 44556667777888999999999999989999999997755311 111111 11 37999999
Q ss_pred CCCCcEEEEEEEEcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEE
Q psy670 275 IGPDSGTYRCNVKNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKE 351 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~ 351 (540)
+.+|+|.|+|.+.+..+. ....+.+.|... |.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..
T Consensus 76 ~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~ 148 (209)
T 1nbq_A 76 TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-------PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV 148 (209)
T ss_dssp CTTSCSEEEEEEEETTSSCEECCEEECCEEBC-------CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCC
T ss_pred CHHHCcEEEEEEecCCCCccceEEEEEEEecC-------CcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCee
Confidence 999999999999998653 344555666553 222222333457889999999997 8899999999999988
Q ss_pred ccCCCce-------EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE--EEEEE
Q psy670 352 LQQTDRI-------SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN--LTLNI 405 (540)
Q Consensus 352 ~~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V 405 (540)
+...... ........ ..|.|.+++.+|+|.|+|.|.|..|....+ +.|.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 149 MPTNPKSTRAFSNSSYVLNPTT----GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCSCSSSSSSCTTCCCCCCTTT----CCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred CCCccccceeeeccceEEcCCc----ceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 7654321 00000111 279999999999999999999999987444 44444
No 172
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.82 E-value=5.7e-19 Score=155.90 Aligned_cols=172 Identities=15% Similarity=0.276 Sum_probs=126.3
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-------------------CceEEEEeecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-------------------GRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
+..+.+|++++|.|...+.+.+.+.|++++...... .+..+. .+ .+|.|.+++
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-----~~---~~L~i~~v~ 79 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SN---GSLLFQMIT 79 (208)
T ss_dssp SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-----TT---SCEEECSCC
T ss_pred cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-----cC---CeEEEcccc
Confidence 356789999999999877888899999975432211 111111 01 169999999
Q ss_pred CCCCeEEEEEEEcCC-ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec
Q psy670 172 KDDGGNYRCNACNSI-GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE 250 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~ 250 (540)
.+|+|.|+|.+.+.. +.....+.|.|..... .|.+...+.. +.+|+.+.|.|.+.+.| +.+.|++++..+..
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~----~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~ 152 (208)
T 3r4d_A 80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVT----QPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQL 152 (208)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEEECCCC----CCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCC
T ss_pred ccCCeEEEEEEEcccCceeEEEEEEEeccCCC----CCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCC
Confidence 999999999999985 5567777788875322 3455444333 78899999999999866 79999999999876
Q ss_pred cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee-eeEEEEEee
Q psy670 251 SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN-ANLNLNIEA 303 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~ 303 (540)
..+...... . ..|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus 153 ~~~~~~~~~--~----~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~ 200 (208)
T 3r4d_A 153 TERMTLSQN--N----SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200 (208)
T ss_dssp CSSEEEETT--T----TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred CCCeEEcCC--C----CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence 665543321 1 2799999999999999999999988753 345555543
No 173
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.82 E-value=6.2e-20 Score=157.37 Aligned_cols=167 Identities=16% Similarity=0.221 Sum_probs=124.3
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
+|.+...+....+.+|+.++|.|.+.+.+.+ .+.|++++..+..... .|.|.+++.+|+|.|+|.
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~--------------~L~i~~v~~~d~G~Y~C~ 69 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS--------------SLNIVNAKFEDSGEYKCQ 69 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS--------------EEEECSCCGGGCEEEEEE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCce--------------EEEEeccceecCEEEEEE
Confidence 5667777777789999999999999888775 6999999998865322 899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670 390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g 469 (540)
+.|..+. ..+.|.|.. ++.+...+ ...+.+|
T Consensus 70 ~~~~~~s--~~~~l~V~~----------------------------------------------~~~~~~~~-~~~~~~g 100 (176)
T 1f2q_A 70 HQQVNES--EPVYLEVFS----------------------------------------------DWLLLQAS-AEVVMEG 100 (176)
T ss_dssp CTTSSCC--CCEEEEEEC----------------------------------------------SSEEEEES-CSEEETT
T ss_pred cCCcccc--ccEEEEEeC----------------------------------------------cceeecCC-cceeeCC
Confidence 9986653 345555553 33333322 2467799
Q ss_pred CeEEEEEEEe-eecCCceEEEecCeecCCCC-eEEE---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEeccccC
Q psy670 470 KTVVIECKVM-SMYEPSVTWMKEKNTVKEDN-KHVV---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK 540 (540)
Q Consensus 470 ~~~~l~C~v~-g~p~~~v~W~~~~~~l~~~~-~~~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (540)
+.++|.|.+. +.|.+.++|+|+|..+.... ...+ .+...|.|.|+|.+.+...........+.+.-+|+.|
T Consensus 101 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~K 176 (176)
T 1f2q_A 101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176 (176)
T ss_dssp SCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC--
T ss_pred CCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCCCC
Confidence 9999999995 56677999999999885331 2223 4566789999999998766666667888888888765
No 174
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.81 E-value=2.8e-19 Score=153.02 Aligned_cols=160 Identities=14% Similarity=0.220 Sum_probs=119.7
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|+++|..+..... .|.|.+++.+|+|.|+|.
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~~--------------~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------------SYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCS--------------EEEESSCCGGGCEEEEEE
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCce--------------EEEEeCCCcccCEEEEEE
Confidence 67777777777899999999999999988776 799999988764322 799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670 390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g 469 (540)
+.|..+ +..+.|.|.. +|.+...+ ...+.+|
T Consensus 73 ~~n~~~--s~~~~l~V~~----------------------------------------------~~~~~~~~-~~~~~~g 103 (175)
T 1fnl_A 73 TNLSTL--SDPVQLEVHI----------------------------------------------GWLLLQAP-RWVFKEE 103 (175)
T ss_dssp CSSSCC--CCCEEEEEEC----------------------------------------------SSEEEECS-CSEEETT
T ss_pred eeCCcc--cccEEEEEeC----------------------------------------------CCceeeCC-CceecCC
Confidence 998654 4455666654 33333333 2457789
Q ss_pred CeEEEEEEEeeecCC-ceEEEecCeecCCC----CeEEEEEEecCCeEEEEEEeeeeeeeeCCeeEEEE
Q psy670 470 KTVVIECKVMSMYEP-SVTWMKEKNTVKED----NKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIY 533 (540)
Q Consensus 470 ~~~~l~C~v~g~p~~-~v~W~~~~~~l~~~----~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~ 533 (540)
+.++|.|.+.+.|++ .++|+|+|..+... ......+...|.|.|+|.+.+...........+.+
T Consensus 104 ~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 172 (175)
T 1fnl_A 104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172 (175)
T ss_dssp CCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEE
Confidence 999999999987765 99999999987522 12222456678999999999865555544444443
No 175
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.81 E-value=1.4e-19 Score=156.41 Aligned_cols=164 Identities=15% Similarity=0.221 Sum_probs=119.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEe--ecCC------------CceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKV--IEDT------------GRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
.+.+.+|++++|.|.+.+.|.+.+.|++++.. +... .+....... ......+|.|.+++.+|+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L~i~~v~~~D~G 81 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL--WDQGNFPLIIKNLKIEDSD 81 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGG--GGGTBCCEEECSCCGGGCE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCcccccccc--ccCCeEEEEEecCCHHHCE
Confidence 35678999999999998888899999998753 2111 111111000 0111236999999999999
Q ss_pred EEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEE
Q psy670 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI 256 (540)
Q Consensus 177 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~ 256 (540)
.|+|.+.+..+ .+.|.|.. +.. +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 82 ~Y~C~~~~~~~----~~~l~V~~----------~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~---- 142 (184)
T 2ny1_B 82 TYICEVEDQKE----EVQLLVFG----------LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG---- 142 (184)
T ss_dssp EEEEEETTEEE----EEEEEEEE----------EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEES----
T ss_pred EEEEEEEcCCC----cEEEEEEE----------ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccCc----
Confidence 99999987654 34455542 111 223356789999999999999999999999886552111
Q ss_pred EEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670 257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 257 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~ 305 (540)
..|.|.+++.+|+|.|+|.|.|..+.....+.|.|...+
T Consensus 143 ----------~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 143 ----------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp ----------SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred ----------eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence 279999999999999999999988888888888887643
No 176
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.81 E-value=2.4e-19 Score=160.59 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=115.2
Q ss_pred ceeecCCCCeEEEEEEecccCCC---eEEEEeCCEEe-----------ecc------CceEEEEecCCCeEEEEEEEeCC
Q psy670 215 RIIPNESGTLIQMKCKCSAKPRP---EVKWFKADKLV-----------KES------SKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~l-----------~~~------~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
..+.+.+|++++|.|.+.+.+.+ .|.|++++... ... .+... ...........|.|.++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~-~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI-LRDGITAGKAALRIHNV 90 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEE-ECTTGGGTEEEEEESSC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEE-ecccccCCeEEEEEeeC
Confidence 34667789999999999775543 69999976421 110 01111 11111122458999999
Q ss_pred CCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEcc
Q psy670 275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQ 353 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~ 353 (540)
+.+|+|.|+|.|.|..+.....+.+.+.... ...+....+.+|+.+.|.|.+.+ .|.|.|.|++++..+.
T Consensus 91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~ 161 (226)
T 4f80_A 91 TASDSGKYLCYFQDGDFYEKALVELKVAALG---------SDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161 (226)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEBCC---------CCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred chHHCeeEEEEEECCCcEEEEEEEEeeccce---------ecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEc
Confidence 9999999999999987766555444443211 11223455778999999999998 5999999999755443
Q ss_pred CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 354 QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
......... ++......+.+..++.+|+|.|+|.|.|..|...+++.|.|.+
T Consensus 162 ~~~~~~~~~--~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 162 PTVEAPVVA--DGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp CCEECCCEE--CTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred CCCceEEEE--CCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 322222111 2222111333444567899999999999999999988888865
No 177
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=160.01 Aligned_cols=186 Identities=13% Similarity=0.217 Sum_probs=126.6
Q ss_pred CCceeecCCCCeEEEEEEecccCCC---eEEEEeCCEEeeccCce------EEEEe-----------cCCCeEEEEEEEe
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPRP---EVKWFKADKLVKESSKI------KIIVN-----------EQDDTYEIICEIT 272 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~l~~~~~~------~~~~~-----------~~~~~~~~~l~i~ 272 (540)
.+..+.+..|++++|.|.+.+.|.+ .|.|++++..+...... ..... ........+|.|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 3456778899999999999987765 48999977543221100 00000 0011112369999
Q ss_pred CCCCCCcEEEEEEEEcCCCCeeeeE-EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE
Q psy670 273 DPIGPDSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~~~~~~-~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~ 351 (540)
+++.+|+|.|.|.+.+..+...... .+.+... ++..........+..|+.+.+.|.+.+.|.|.|.|++++..
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~ 158 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVP------PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG 158 (218)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC------CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred eccHHHCCceeEEEEeccCceeeeEEEEEEeee------ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence 9999999999999988665443333 3333321 23333344556677899999999999999999999999876
Q ss_pred ccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+....... ........+.|.|..+..+|+|.|+|.|.|..|.....+++.|.+
T Consensus 159 ~~~~~~~~---~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 159 TTSSRSFK---HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp EEEEEEEE---CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred cccCceEe---cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 65432211 111222345899999999999999999999999877777666654
No 178
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=156.72 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=117.0
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--eE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SN 190 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~ 190 (540)
.+.+|++++|.|.+.+ +.+.+.|+|++..+....... ........|.|.+++.+|+|.|+|.+.|..+. .+
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s 87 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP------LEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS 87 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC------CSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc------ccCCceEEEEeccCCcccCceEEEEEeCCCcccCCC
Confidence 6789999999999977 778999999988764321100 01112238999999999999999999998873 35
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+.+. ++.+.|++++..+.......... .......|.
T Consensus 88 ~~~~l~V~~~~----~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~---~~~~~~~L~ 158 (196)
T 3p2t_A 88 DPLELVMTGAY----SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHG---AQQHQAEFP 158 (196)
T ss_dssp CCEEEEEECSS----CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEE---EEEEEEEEE
T ss_pred ccEEEEecCCC----CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccc---ccCcceEEE
Confidence 56777776422 14555444433 56789999999999874 45899999998765433221110 111234799
Q ss_pred EeCCCCCCcEEEEEEEEcCCC
Q psy670 271 ITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~ 291 (540)
|.+++.+|+|.|+|.|.|..+
T Consensus 159 i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 159 MSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp ECSCCGGGCEEEEEEEECGGG
T ss_pred eCCCcccCCCeEEEEEEcCCC
Confidence 999999999999999999765
No 179
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.81 E-value=7e-20 Score=156.61 Aligned_cols=135 Identities=19% Similarity=0.309 Sum_probs=101.1
Q ss_pred ceeeeeecCeecc----------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce--eeeEEEEEe
Q psy670 24 FQMNMYHKGSLLK----------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG--SSTVNLNFS 91 (540)
Q Consensus 24 ~~~~W~k~~~~l~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~--~~~~~l~v~ 91 (540)
+.|.|+|++..+. .+.++.+ ..++ +|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|.
T Consensus 28 ~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~~~g-------sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~ 98 (176)
T 1hng_A 28 DEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANG-------DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL 98 (176)
T ss_dssp EEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTS-------CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred ccEEEEeCCceeEEEcCCCeecCCCCeEEE--CCCC-------cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEe
Confidence 7999999997552 2344443 3333 69999999999999999999998876 566777776
Q ss_pred ecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 92 EEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 92 ~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
..+. .+.+...+..+.|.|.+.|.|.+.+.|+++|..+....+ +.|.++.
T Consensus 99 ~~~~--------------~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~----------------~~i~~~~ 148 (176)
T 1hng_A 99 EMVS--------------KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ----------------KTMSYQW 148 (176)
T ss_dssp CCCC--------------CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS----------------SEEEEEC
T ss_pred CCCC--------------CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc----------------EEEEEEE
Confidence 5321 122233455699999999999999999999988754432 2333567
Q ss_pred CCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670 172 KDDGGNYRCNACNSIGESNANIALNF 197 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v 197 (540)
.+|+|.|+|.|.|..|.......|.+
T Consensus 149 ~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 149 TNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred ccCCeEEEEEEEecCCCceecccccC
Confidence 89999999999999998877766544
No 180
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=155.02 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=117.3
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|++++..... .. ..|.|.+++.+|+|.|+|.+
T Consensus 8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~----------~~----~~L~i~~v~~~D~G~Y~C~a 71 (184)
T 2gi7_A 8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQ----------DQ----AVLFIPAMKRSLAGRYRCSY 71 (184)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCEE----------SS----SEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccccC----------cc----cEEEECcCChhhCceEEEEE
Confidence 5666655554 6789999999999987 7789999999865110 11 27999999999999999999
Q ss_pred EcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 287 KNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 287 ~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
.|..|. .+..+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+.......
T Consensus 72 ~n~~g~~~~s~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~----- 140 (184)
T 2gi7_A 72 QNGSLWSLPSDQLELVATGVF----AKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPER----- 140 (184)
T ss_dssp EETTEEBCCCCCEEEEEESSS----CCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCE-----
T ss_pred EcCCCccCCCCCEEEEecCcC----CCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCC-----
Confidence 997653 3445667665421 245565555 34567899999999986554 6999999998776532211
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
.....|.|.+++.+|+|.|+|.|.|..+
T Consensus 141 ---~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 141 ---WYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp ---EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred ---CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 1122688999999999999999999754
No 181
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.81 E-value=2.4e-19 Score=158.36 Aligned_cols=180 Identities=14% Similarity=0.230 Sum_probs=126.3
Q ss_pred eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEE-------EE-ecCCCeE----EEEEEEeCCCCCCcEEEE
Q psy670 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-------IV-NEQDDTY----EIICEITDPIGPDSGTYR 283 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~-------~~-~~~~~~~----~~~l~i~~~~~~d~g~y~ 283 (540)
...+.+|+.+.|.|...+.+.+.+.|++++........... .. ....+.. ...|.|.+++.+|+|.|+
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~ 87 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT 87 (208)
T ss_dssp SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEE
Confidence 34567899999999988888889999987543221110000 00 0000000 026999999999999999
Q ss_pred EEEEcCC-CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670 284 CNVKNEF-GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362 (540)
Q Consensus 284 C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 362 (540)
|.+.+.. +.....+.|.|...+ ..|.+...+.. +.+|+.+.|.|.+.+.| +.+.|+++|..+....+...
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~----~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~-- 158 (208)
T 3r4d_A 88 LDMTDENYRRTQATVRFHVHQPV----TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTL-- 158 (208)
T ss_dssp EEEECSSCEEEEEEEEEEEECCC----CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEE--
T ss_pred EEEEcccCceeEEEEEEEeccCC----CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEE--
Confidence 9999985 445556666665432 14555554443 88899999999998866 79999999999987665543
Q ss_pred EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEEE
Q psy670 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEMV 408 (540)
Q Consensus 363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~ 408 (540)
..++. +|.|.++..+|+|.|+|.|.|..|.. +..++|.|..+
T Consensus 159 ~~~~~----~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~ 201 (208)
T 3r4d_A 159 SQNNS----ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD 201 (208)
T ss_dssp ETTTT----EEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC--
T ss_pred cCCCC----EEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeC
Confidence 22222 79999999999999999999999875 44666666553
No 182
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=158.11 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=107.3
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--E
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--N 190 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~ 190 (540)
.+.+|++++|.|.+.+.|. .+.|+|++..+...... .. .......|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~----~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s 87 (196)
T 2d3v_A 15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN----PL--EPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPS 87 (196)
T ss_dssp EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC----CC--SSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCC
T ss_pred cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc----cc--CCccccEEEeccCChhHCeEEEEEEeCCCCcCCcC
Confidence 6789999999999977665 99999999866432110 00 01112389999999999999999999887643 4
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+.|.|..... +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|++++..+........ ....+.....|.
T Consensus 88 ~~~~l~V~~~~~----~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~--~~~~~~~~~~L~ 159 (196)
T 2d3v_A 88 DPLELVVTGFYN----KPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQ--LTPSGQFQALFP 159 (196)
T ss_dssp CCEEEEEECSSC----CCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECE--ECTTSCEEEEEE
T ss_pred ccEEEEecCCCC----CCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccc--cccCCCceeEEE
Confidence 456677764221 45554433 34678899999999999988 89999999987643211100 111223345899
Q ss_pred EeCCCCCCcEEEEEEEEcCCC
Q psy670 271 ITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~ 291 (540)
|.+++.+|+|.|+|.|.|..+
T Consensus 160 I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 160 VGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp CCCCBTTBCEEEEEEEEETTE
T ss_pred eeecCcccCeeEEEEEEccCC
Confidence 999999999999999998754
No 183
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.81 E-value=1.6e-20 Score=166.06 Aligned_cols=170 Identities=16% Similarity=0.274 Sum_probs=122.3
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 177 (540)
....+.+|+++.|.|.+.+.|.+.+.|++++..+ ....+..... ..|.|.+++.+|+|.
T Consensus 12 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---------~~L~i~~~~~~d~G~ 82 (209)
T 1nbq_A 12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP---------TGITFKSVTREDTGT 82 (209)
T ss_dssp SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET---------TEEECSCCCTTSCSE
T ss_pred CceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec---------cEEEEeeCCHHHCcE
Confidence 3456789999999999998899999999976542 1122222221 389999999999999
Q ss_pred EEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCce
Q psy670 178 YRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKI 254 (540)
Q Consensus 178 Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~ 254 (540)
|+|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......
T Consensus 83 Y~C~~~~~~g~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~ 155 (209)
T 1nbq_A 83 YTCMVSEEGGNSYGEVKVKLIVLV-------PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKS 155 (209)
T ss_dssp EEEEEEETTSSCEECCEEECCEEB-------CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSS
T ss_pred EEEEEecCCCCccceEEEEEEEec-------CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcccc
Confidence 9999998865 345566677765 3433333344557789999999997 88999999999999887654321
Q ss_pred EEEEec---CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670 255 KIIVNE---QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 255 ~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 295 (540)
...... ........|.|.+++.+|.|.|+|.|.|..|....
T Consensus 156 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 199 (209)
T 1nbq_A 156 TRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT 199 (209)
T ss_dssp SSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEE
T ss_pred ceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccc
Confidence 000000 00001137999999999999999999999988733
No 184
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.80 E-value=7e-19 Score=153.94 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=110.6
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-ce--e
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-GE--S 189 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~--~ 189 (540)
.+.+|++++|.|.+.+.|. .+.|+|+|..+........ ..... ..|.|.+++.+|+|.|+|.+.|.. +. .
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~---~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~ 87 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQ---ELVKK---GQFPIPSITWEHTGRYRCYYGSDTAGRSES 87 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCH---HHHTT---TEEEESSCCGGGCEEEEEEEEETTTEECCC
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccc---cCCcc---cEEEECCCCHHHCeEEEEEEECCCCCcccC
Confidence 6789999999999987765 7999999887632111000 00011 179999999999999999999987 52 3
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
+..+.|.|..... .|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++..+.......... ..+.....|
T Consensus 88 s~~~~l~V~~~~~----~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~--~~~~~~~~L 159 (198)
T 1ugn_A 88 SDPLELVVTGAYI----KPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPH--ARGSSRAIF 159 (198)
T ss_dssp CCCEEEEEECSSC----CCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC--------CCEEEE
T ss_pred CccEEEEEccccc----CCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccccc--CCCcceeEE
Confidence 5567777765221 34444333 2456789999999999888 77999999998764322110000 111123479
Q ss_pred EEeCCCCCCcEEEEEEEEcCCC
Q psy670 270 EITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
.|.+++.+|+|.|+|.|.|..+
T Consensus 160 ~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 160 SVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp EECCCCTTSCEEEEEEEECTTS
T ss_pred EecccCcccCeEEEEEEEeCCC
Confidence 9999999999999999999765
No 185
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.80 E-value=1.3e-19 Score=156.62 Aligned_cols=162 Identities=14% Similarity=0.237 Sum_probs=119.6
Q ss_pred eeecCCCCeEEEEEEecccCCCeEEEEeCCEE--eeccC------------ceEEEEecCCCeEEEEEEEeCCCCCCcEE
Q psy670 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKL--VKESS------------KIKIIVNEQDDTYEIICEITDPIGPDSGT 281 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~--l~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 281 (540)
.+.+.+|+++.|.|.+.+.|.+.+.|++++.. +.... +...... ........|.|.+++.+|+|.
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS-LWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGG-GGGGTBCCEEECSCCGGGCEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccc-cccCCeEEEEEecCCHHHCEE
Confidence 34567899999999999889999999998863 21111 1111000 000112359999999999999
Q ss_pred EEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670 282 YRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361 (540)
Q Consensus 282 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 361 (540)
|+|.+.+..+ .+.+.|.... .+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 83 Y~C~~~~~~~----~~~l~V~~~~-----------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~------- 140 (184)
T 2ny1_B 83 YICEVEDQKE----EVQLLVFGLT-----------ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------- 140 (184)
T ss_dssp EEEEETTEEE----EEEEEEEEEE-----------ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE-------
T ss_pred EEEEEEcCCC----cEEEEEEEec-----------CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc-------
Confidence 9999988643 4455554311 12334678999999999999999999999998765411
Q ss_pred EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
... .|.|.+++.+|+|.|+|.|.|..+....++.|.|..
T Consensus 141 ---~~~----~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~ 179 (184)
T 2ny1_B 141 ---GGK----TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179 (184)
T ss_dssp ---ESS----EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ---Cce----EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence 112 899999999999999999999999999999998876
No 186
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.80 E-value=6.9e-19 Score=157.11 Aligned_cols=183 Identities=16% Similarity=0.249 Sum_probs=120.0
Q ss_pred CCceeecCCCCeEEEEEEecccCC-----CeEEEEeCCEEeecc---------------CceEEEEecCCCeEEEEEEEe
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPR-----PEVKWFKADKLVKES---------------SKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~-----~~v~W~~~~~~l~~~---------------~~~~~~~~~~~~~~~~~l~i~ 272 (540)
.+..+.+.+|+++.|.|.+.+.|. ..+.|++++..+... .+..+... ........|.|.
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~-~~~~~~~~L~I~ 85 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD-QLSLGNAALQIT 85 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHH-HHTTTEEEEEES
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccc-cccCCEEEEEEc
Confidence 345567778999999999977653 489999987443211 11111000 001123479999
Q ss_pred CCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC-CEE
Q psy670 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE-GKE 351 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~-~~~ 351 (540)
+++.+|+|.|+|.+.+ .+.....+.|.|...+. .+... ....+..|+.+.|.|.+.|.|.|.+.|+++ +..
T Consensus 86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~----~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~ 157 (222)
T 3sbw_C 86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPYN----KINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV 157 (222)
T ss_dssp SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCC----CCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred CcccccCeEEEEEEEe-CCCceeEEEEEEECCCC----CCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence 9999999999999998 56566667777764221 12111 112466899999999999999999999998 555
Q ss_pred ccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 352 LQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+............++.. ..+.|.+ ..+|.|.|+|.|.|..|....++.|.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 158 LSGKTTTTNSKREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp ECCEEEEEECC----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred ecCccceEEEcCCCCCEEEEEEEEE---eccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 54322211111111111 1123344 45789999999999999999999888875
No 187
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.80 E-value=5.3e-19 Score=156.71 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=126.4
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE--EEEEeCCCCCCcEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI--ICEITDPIGPDSGTYRC 284 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C 284 (540)
+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... . ....... .|.|.+++.+|+|.|+|
T Consensus 9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~----~~~~~~~~~~L~I~~v~~~D~G~Y~C 81 (218)
T 1uct_A 9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-R----LKFWNETDPEFVIDHMDANKAGRYQC 81 (218)
T ss_dssp CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-E----CC----CCCEEEECSCCGGGCEEEEE
T ss_pred CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-c----CCCCcceeeEEEEcccccccCEEEEE
Confidence 566666565 46788999999999987 67799999988765432211 0 0001112 69999999999999999
Q ss_pred EEEcCCCCe--eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670 285 NVKNEFGES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362 (540)
Q Consensus 285 ~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 362 (540)
.+.|..+.. +..+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+... ..
T Consensus 82 ~a~n~~~~~~~s~~~~l~V~~~~----~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~~--- 151 (218)
T 1uct_A 82 QYRIGHYRFRYSDTLELVVTGLY----GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQ--- 151 (218)
T ss_dssp EEEETTTEEEECCCEEEEEECSS----CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EE---
T ss_pred EEEcCCCceeecCCEEEEEcCcc----cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--cc---
Confidence 999976532 344666665421 255665555 346789999999997777788899999999876541 11
Q ss_pred EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-----eeEEEEEEEEEE
Q psy670 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-----ELNANLTLNIEM 407 (540)
Q Consensus 363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~ 407 (540)
.... ...|.|.+++.+|+|.|+|.|.|... ..+..+.|.|..
T Consensus 152 ~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 152 SGEH---PANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp ECSS---SEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred CCCc---cCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence 1111 12899999999999999999998632 234556777765
No 188
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=153.19 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=111.5
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--eE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SN 190 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~ 190 (540)
.+.+|++++|.|.+.+ +.+.+.|+|+|.... . .. ..|.|.+++.+|+|.|+|.+.|..+. .+
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~-------~-----~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s 81 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY-------Q-----DQ---AVLFIPAMKRSLAGRYRCSYQNGSLWSLPS 81 (184)
T ss_dssp EEETTCCEEEEEECST-TCSEEEEEETTTCCE-------E-----SS---SEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred cccCCCcEEEEEeCCC-CCCEEEEEECCcccc-------C-----cc---cEEEECcCChhhCceEEEEEEcCCCccCCC
Confidence 6789999999999876 778999999886510 0 01 18999999999999999999998764 24
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+.+ +.+.|+++|..+...... ......|.
T Consensus 82 ~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~--------~~~~~~L~ 147 (184)
T 2gi7_A 82 DQLELVATGVF----AKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPE--------RWYRASFP 147 (184)
T ss_dssp CCEEEEEESSS----CCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCC--------EEEEESSS
T ss_pred CCEEEEecCcC----CCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecC--------CCceEEEE
Confidence 45667775421 145555444 45677899999999987654 599999999876542211 11224688
Q ss_pred EeCCCCCCcEEEEEEEEcCCC
Q psy670 271 ITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~ 291 (540)
|.+++.+|+|.|+|.+.|..+
T Consensus 148 i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 148 IITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp EEEETTCCSEEEEEEEECTTS
T ss_pred EccCCccCCeEEEEEEEeCCC
Confidence 999999999999999999754
No 189
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.80 E-value=1.3e-18 Score=155.24 Aligned_cols=181 Identities=17% Similarity=0.285 Sum_probs=119.7
Q ss_pred CCCccccCCCeEEEEEEEeecCC-----CceEEEeCCEeecC---------------CCceEEEEeecCcceEEEEEEEc
Q psy670 109 KKPTIHQDGDLLVMECVLEASPM-----PDIIWYQGTKVIED---------------TGRIKMSKKSIGKDTYLLRLEIN 168 (540)
Q Consensus 109 ~~~~~v~~G~~v~l~C~~~~~p~-----~~v~W~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~L~i~ 168 (540)
..+..+.+|+++.|.|.+.+.|. ..+.|+|++..+.. ..+..+..... .....+|.|.
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~--~~~~~~L~I~ 85 (222)
T 3sbw_C 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL--SLGNAALQIT 85 (222)
T ss_dssp CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHH--TTTEEEEEES
T ss_pred CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccc--cCCEEEEEEc
Confidence 34567889999999999877663 37999997643310 12222211110 1123489999
Q ss_pred CCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC-CEE
Q psy670 169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA-DKL 247 (540)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~ 247 (540)
+++.+|+|.|+|.+.+ .+.....+.|.|... +..........+.+|+.+.|.|.+.++|.+.+.|+++ +..
T Consensus 86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~-------~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~ 157 (222)
T 3sbw_C 86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAP-------YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV 157 (222)
T ss_dssp SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBC-------CCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred CcccccCeEEEEEEEe-CCCceeEEEEEEECC-------CCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence 9999999999999998 566677788888742 2211111112567899999999999999999999998 555
Q ss_pred eeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 248 VKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 248 l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
+......... ....+.. .+.+.+ ...|.|.|+|.|.|..|.....+.+.|..
T Consensus 158 ~~~~~~~~~~-~~~~~~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 158 LSGKTTTTNS-KREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp ECCEEEEEEC-C----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred ecCccceEEE-cCCCCCEEEEEEEEE---eccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 4332221111 1111211 123333 45789999999999999988888888764
No 190
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.80 E-value=1.4e-18 Score=150.43 Aligned_cols=178 Identities=14% Similarity=0.178 Sum_probs=122.5
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
.|.+...+.. .+.+|++++|.|.+.+. ...+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 76 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIY 76 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECC-----SSCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCccccccc-----ccCCCcceeEEEeCcCCcccCeEEEEEe
Confidence 5566555555 67889999999999753 468999999987652110 0011223357999999999999999999
Q ss_pred EcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 287 KNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 287 ~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
.+..+. .+..+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+++|..+... . ..
T Consensus 77 ~~~~~~~~~s~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~----~--~~ 144 (188)
T 1oll_A 77 RVGELWSEPSNLLDLVVTEMY----DTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ----R--GY 144 (188)
T ss_dssp EETTEECCCCCCEEEEEESCS----CCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE----E--EE
T ss_pred cCCCCCCCCCCceEEEecccC----CCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc----c--cC
Confidence 886442 2455667765421 145565544 345789999999999865 45689999998765431 1 11
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-ee--eEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFH-GE--LNANLTLNI 405 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~--~~~~~~l~V 405 (540)
.. ....|.|.+++.+|+|.|+|.|.|.. .. .+..+.|.|
T Consensus 145 ~~--~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V 186 (188)
T 1oll_A 145 GK--VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186 (188)
T ss_dssp CS--SEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred CC--ceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence 11 12389999999999999999999865 22 234455554
No 191
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.80 E-value=7.4e-19 Score=160.05 Aligned_cols=173 Identities=17% Similarity=0.330 Sum_probs=120.4
Q ss_pred CCccccCCCeEEEEEEEee---cCCCceEEEeCCEeec------------------------------CCCceEEEEeec
Q psy670 110 KPTIHQDGDLLVMECVLEA---SPMPDIIWYQGTKVIE------------------------------DTGRIKMSKKSI 156 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~~~~~------------------------------~~~~~~~~~~~~ 156 (540)
.+..+.+|++++|.|.+.+ .|.+.+.|+|++.... ...+..+..
T Consensus 10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--- 86 (250)
T 2fbo_J 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN--- 86 (250)
T ss_dssp SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC---
T ss_pred CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc---
Confidence 3567889999999999987 7888999999864321 001111100
Q ss_pred CcceEEEEEEEcCCCCCCCeEEEEEEEcCCce-----eEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEE
Q psy670 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGE-----SNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCK 230 (540)
Q Consensus 157 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~ 230 (540)
....+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|...+. ++.+ ...+....+.+|+.+.|.|.
T Consensus 87 ---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~~~~~~~~~~v~~g~~v~L~C~ 159 (250)
T 2fbo_J 87 ---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP----SNNVHVSTAEVVQVDEGNDITMTCP 159 (250)
T ss_dssp ---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC----CSCCEECCCSEEECCTTCCEEECCC
T ss_pred ---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC----CCeEEEecCceEEecCCCcEEEEEE
Confidence 01137999999999999999999987664 25577888875322 2222 23455677888999999999
Q ss_pred ecccCCCeEEEEeCCEEeeccCceEEEE-------------ec-CCCe---EEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 231 CSAKPRPEVKWFKADKLVKESSKIKIIV-------------NE-QDDT---YEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 231 ~~~~p~~~v~W~~~~~~l~~~~~~~~~~-------------~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
+.+.|.+.+.|++++..+.......... .. .... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 160 ~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 238 (250)
T 2fbo_J 160 CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238 (250)
T ss_dssp EESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred ecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence 9999999999999988775432111000 00 0000 0037999999999999999999996654
No 192
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=155.15 Aligned_cols=182 Identities=12% Similarity=0.171 Sum_probs=125.9
Q ss_pred CccccCCCeEEEEEEEeecCCC---ceEEEeCCEeecCCC------------------ceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASPMP---DIIWYQGTKVIEDTG------------------RIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
.+.+.+|++++|.|.+.+.|.+ .|.|+|++..+.... +..... ........+|.|.+
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 8 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPP--PPRNPLDGSVLLRN 85 (218)
T ss_dssp EEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCS--SCCCTTBCCEEESS
T ss_pred eEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEec--ccccCCeEEEEEee
Confidence 4567899999999999887766 489999765432111 111100 01111123799999
Q ss_pred CCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEe
Q psy670 170 PTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLV 248 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l 248 (540)
++.+|+|.|.|.+.+..+.. .....+.+... ++..........+..|+.+.+.|.+.+.|.+.|.|++++..+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~ 159 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVP------PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGT 159 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC------CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeee------ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCccc
Confidence 99999999999998766544 33333433321 222233344566778999999999999999999999998876
Q ss_pred eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
...... .........+.|.|.++..+|.|.|+|.|.|..|.....+.+.|.+
T Consensus 160 ~~~~~~---~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 160 TSSRSF---KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp EEEEEE---ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred ccCceE---ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 543322 1122333456899999999999999999999998877776666654
No 193
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.79 E-value=1.6e-19 Score=154.35 Aligned_cols=154 Identities=14% Similarity=0.273 Sum_probs=111.5
Q ss_pred ccccCCCeEEEEEEEee--cCCCceEEEeCCEeec----------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670 112 TIHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIE----------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 179 (540)
+.+.+|++++|.|...+ .+.+.|.|+|++..+. ...++.+. .+. +|.|.+++.+|+|.|+
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~-----~~g---sL~I~~v~~~D~G~Y~ 77 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-----ANG---DLKIKNLTRDDSGTYN 77 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC-----TTS---CEEESSCCGGGCEEEE
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC-----CCC---cEEEcccccccCEEEE
Confidence 35678999999994322 4566899999987542 22333331 111 5999999999999999
Q ss_pred EEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEE
Q psy670 180 CNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKII 257 (540)
Q Consensus 180 C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~ 257 (540)
|.+.|..|.. ...+.|.|..... .|.+. ..+..+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 78 C~~~n~~g~~~~~~~~~l~V~~~~~----~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~---- 141 (176)
T 1hng_A 78 VTVYSTNGTRILNKALDLRILEMVS----KPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ---- 141 (176)
T ss_dssp EEEEETTCCEEEEEEEEEEEECCCC----CCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS----
T ss_pred EEEEeCCCCEEEEEEEEEEEeCCCC----CCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc----
Confidence 9999988876 6667777775221 23322 1244589999999999999999999988765443
Q ss_pred EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670 258 VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300 (540)
Q Consensus 258 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 300 (540)
+.|.++..+|+|.|+|.|.|..|.......|.
T Consensus 142 -----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~ 173 (176)
T 1hng_A 142 -----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 173 (176)
T ss_dssp -----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred -----------EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence 23346668899999999999998776655443
No 194
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.79 E-value=2.2e-19 Score=155.21 Aligned_cols=151 Identities=13% Similarity=0.296 Sum_probs=109.0
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcC-CCCCCCeEEEEEEEcCCceeEE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN-PTKDDGGNYRCNACNSIGESNA 191 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~~~~~~~ 191 (540)
+..+|+++.|.|.+.+ + +.+.|+|+|..+...... +|.|.+ ++.+|+|.|+|.+.|..|....
T Consensus 10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~~~--------------~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~ 73 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGYYVCYTPASNKNTYL 73 (186)
T ss_dssp EEEETTEEEEECSSCC-C-TTCEEEETTEEECSCCCS--------------EEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCCCCC--------------EEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence 3468999999999976 3 359999999988654110 799999 9999999999999998887555
Q ss_pred EEEEEEecCcCCC-----------CCCCeeccCC-------ceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc
Q psy670 192 NIALNFQGGENGA-----------GFAPSFIEKP-------RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK 253 (540)
Q Consensus 192 ~~~l~v~~~~~~~-----------~~~p~~~~~~-------~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~ 253 (540)
.+.+.|....... ..++.+.... ....+.+|+.+.|.|.+ |.+.+.|+++|..+.....
T Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~ 150 (186)
T 1jbj_A 74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA 150 (186)
T ss_dssp EECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC
T ss_pred EEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC
Confidence 5555554322110 0011111000 01234589999999998 7889999999998864322
Q ss_pred eEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 254 IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 254 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
. ...|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 -------~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 -------T----KNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp -------C----SSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred -------C----cceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 1 1268899999999999999999987654
No 195
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.79 E-value=4.2e-19 Score=153.41 Aligned_cols=149 Identities=17% Similarity=0.328 Sum_probs=108.9
Q ss_pred CCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeC-CCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD-PIGPDSGTYRCNVKNEFGESNANLN 298 (540)
Q Consensus 220 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~ 298 (540)
..|+.+.|.|.+.+ +. .+.|+++|..+..... .+|.|.+ ++.+|+|.|+|.|.|..|.....+.
T Consensus 12 ~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~~-------------~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 76 (186)
T 1jbj_A 12 ISGTSVELTCPLDS-DE-NLKWEKNGQELPQKHD-------------KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76 (186)
T ss_dssp EETTEEEEECSSCC-CT-TCEEEETTEEECSCCC-------------SEEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred eCCcEEEEEEeCCC-CC-ceEEEECCEECCCCCC-------------CEEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence 46999999999987 43 4999999998865421 1699999 9999999999999999887555555
Q ss_pred EEEeeccCCCCC-----------CCeEE----eCCce---EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEE
Q psy670 299 LNIEAEAEPEGD-----------PPTFI----EKPKI---RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW 360 (540)
Q Consensus 299 l~v~~~~~~~~~-----------~p~~~----~~~~~---~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~ 360 (540)
+.|.....+... ++.+. ..... ..+.+|+.+.|.|.+ |.|.|.|+++|..+.....
T Consensus 77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~--- 150 (186)
T 1jbj_A 77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA--- 150 (186)
T ss_dssp CCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---
T ss_pred EEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---
Confidence 554433222110 00000 00001 123489999999988 8899999999999864332
Q ss_pred EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 361 NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 361 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
.+. .|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 ----~~~----~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 ----TKN----TWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ----CSS----CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ----Ccc----eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 111 79999999999999999999998866
No 196
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.79 E-value=1.1e-18 Score=148.71 Aligned_cols=153 Identities=19% Similarity=0.304 Sum_probs=114.7
Q ss_pred ccccCCCeEEEEEEEeecC-CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 112 TIHQDGDLLVMECVLEASP-MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
..+.+|+++.|.|.+.+.| .+.+.|+++|..+..... .+.|.+++.+|+|.|+|.+.+....
T Consensus 14 ~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~---------------~~~~~~~~~~d~G~Y~C~~~~~~~s-- 76 (170)
T 3ry4_A 14 INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------------PSYRFKANNNDSGEYTCQTGQTSLS-- 76 (170)
T ss_dssp SEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS---------------SEEEEECCGGGCEEEEEEETTSBCC--
T ss_pred eEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc---------------ceEEEecccccCeEEEEEEeCCCce--
Confidence 3578999999999998876 568999999998865422 4567789999999999999875443
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l 269 (540)
..+.|.|.. ++.+.. +....+.+|+.+.|.|.+. +.|.+.+.|++++..+..... . ..|
T Consensus 77 ~~~~l~v~~-------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~--------~----~~L 136 (170)
T 3ry4_A 77 DPVHLTVLF-------EWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL--------D----PTF 136 (170)
T ss_dssp CCEEEEEEC-------CSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESS--------C----CEE
T ss_pred EeEEEEEEC-------CceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCC--------C----CeE
Confidence 345666664 333333 2344567899999999995 467789999999987653221 1 269
Q ss_pred EEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEE
Q psy670 270 EITDPIGPDSGTYRCNVKNEFGE-SNANLNLNI 301 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v 301 (540)
.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 137 ~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 137 SIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 99999999999999999998875 344455544
No 197
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.79 E-value=7.2e-19 Score=159.41 Aligned_cols=224 Identities=13% Similarity=0.152 Sum_probs=124.2
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ............|.|.+++.+|+|.|+|.+
T Consensus 7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 81 (257)
T 1b6u_A 7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHL---IGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81 (257)
T ss_dssp CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEE---ECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCccee---eeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence 566665554 55778999999999974 4678999998875432110 000012234458999999999999999999
Q ss_pred EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670 287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361 (540)
Q Consensus 287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 361 (540)
.+... ..+..+.|.|.... .+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+........
T Consensus 82 ~~~~~~~~~s~~S~~~~L~V~~~~----~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~- 154 (257)
T 1b6u_A 82 SVTHSPYQLSAPSDPLDIVITGLY----EKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP- 154 (257)
T ss_dssp ECSSCTTSCCCCCCCEEEEEECSS----CCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC-
T ss_pred eccCCCccccccCCCEEEecccCC----CCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc-
Confidence 86422 23455677776532 2566665554 357899999999998765 468999999987654321110
Q ss_pred EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-----eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccc
Q psy670 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-----ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRD 436 (540)
Q Consensus 362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (540)
.........|.|.+++ |+|.|+|.|.+... ..+..+.|.|..
T Consensus 155 --~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g----------------------------- 201 (257)
T 1b6u_A 155 --KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG----------------------------- 201 (257)
T ss_dssp --CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC-----------------------------
T ss_pred --ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec-----------------------------
Confidence 0011112379999998 99999999997632 223446666655
Q ss_pred cccCcccccceeeeeeeeceeecC-CcEEEecCCCeEEEEEEEeeecCCceEEEecCe
Q psy670 437 FSVNPQFKKYSVLTLSVVPVIREV-PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKN 493 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~p~i~~~-~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~ 493 (540)
+|.+..+ +.......|..+.|.|.+ |.+-..+.|..-+-
T Consensus 202 -----------------~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~ 241 (257)
T 1b6u_A 202 -----------------NPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLDL 241 (257)
T ss_dssp -----------------CC---------------------------------------
T ss_pred -----------------cCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhhhhh
Confidence 3433311 222234568889999888 88888899987543
No 198
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.79 E-value=1.8e-18 Score=153.94 Aligned_cols=184 Identities=12% Similarity=0.221 Sum_probs=119.5
Q ss_pred eccCCceeecCCCCeEEEEEEeccc-CCCeEEEEeCC---EE--e-ecc------------CceEEEEecCCCeEEEEEE
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKAD---KL--V-KES------------SKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~---~~--l-~~~------------~~~~~~~~~~~~~~~~~l~ 270 (540)
+...+ ...+.+|+.+.|.|.+.+. |.+.+.|++.. .. + ... .++.... ......|.
T Consensus 4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~ 78 (218)
T 3s96_B 4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS----SGADRYLS 78 (218)
T ss_dssp EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE----ETTEEEEE
T ss_pred EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec----CCceEEEE
Confidence 34445 6778899999999999998 88999999832 11 0 000 1222111 11134799
Q ss_pred EeCCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eE
Q psy670 271 ITDPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EI 343 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i 343 (540)
|.+++.+|+|.|.|.+.+..+ .......|.|...+ ..+|.+...+.......|+.++|.|.+.+ .|.+ .+
T Consensus 79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v 155 (218)
T 3s96_B 79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP---KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTV 155 (218)
T ss_dssp ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC---CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEE
Confidence 999999999999999998765 23334566666421 12566554333334456799999999998 5766 89
Q ss_pred EEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 344 VWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 344 ~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
.|+++|..+............++.. ..+.|.|.....+|+|.|+|.|.|..+...+++
T Consensus 156 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 156 AWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp EEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred EEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 9999999887632211111112222 123588888888899999999999988766554
No 199
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.79 E-value=3.9e-19 Score=157.64 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=123.0
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|. +.... ...++.... .....+|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 83 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-----SGNMATLTISKAQAGDEA 83 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-----cCCEEEEEECCCChhhCE
Confidence 45688999999999999889999999982 22110 122333322 112348999999999999
Q ss_pred EEEEEEEcCCc---eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEEeecc
Q psy670 177 NYRCNACNSIG---ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKLVKES 251 (540)
Q Consensus 177 ~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~l~~~ 251 (540)
.|+|.+.+..+ .....+.|.|...+. .+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|..+...
T Consensus 84 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 160 (213)
T 3mj8_L 84 DYYCQSWDGTNSAWVFGSGTKVTVLGQPN---AAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG 160 (213)
T ss_dssp EEEEEEEETTTTEEEEBCCEEEEEECSCC---BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred EEEEEeccCCcceeEEcCceEEEEeCCCC---CCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence 99999999877 345556777764221 25666555544445589999999999884 44 489999999988653
Q ss_pred CceEEEE-ecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeee
Q psy670 252 SKIKIIV-NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN 296 (540)
Q Consensus 252 ~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 296 (540)
....... ..........|.|.++..+|.|.|+|.|.|..+....+
T Consensus 161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 206 (213)
T 3mj8_L 161 VKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS 206 (213)
T ss_dssp EEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred cccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence 2111111 11112223579999999999999999999987544433
No 200
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.79 E-value=9.3e-19 Score=161.23 Aligned_cols=189 Identities=15% Similarity=0.239 Sum_probs=120.9
Q ss_pred eeccCCceeecCCCCeEEEEEEec---ccCCCeEEEEeCCEEeeccCc----------------eEEEEecCCCeEEEEE
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCS---AKPRPEVKWFKADKLVKESSK----------------IKIIVNEQDDTYEIIC 269 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~---~~p~~~v~W~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~l 269 (540)
.+...+..+.+.+|+.+.|.|.+. +.+.+.+.|++++........ ...............|
T Consensus 7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 86 (268)
T 3mj6_A 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL 86 (268)
T ss_dssp -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence 344556677888999999999997 667778999996542211100 0011100111111479
Q ss_pred EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE---EccCCCeEEEE
Q psy670 270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV---KAKPMPEIVWF 346 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~---~~~p~~~i~W~ 346 (540)
.|.+++.+|+|.|+|.+.+..+.......+.+.+.+. .+....+.+|+.++|.|.+ .+.|.+.+.|+
T Consensus 87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~----------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~ 156 (268)
T 3mj6_A 87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE----------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM 156 (268)
T ss_dssp EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC----------CCSEEEEETTCCEEECCBCEESSSSCCCEEEEE
T ss_pred EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc----------CCCccccccCCcEEEEEEecCCCCCCccceEEE
Confidence 9999999999999999998765543333344433211 2345678899999999999 56789999999
Q ss_pred ECCEEc-cCC-----------------Cce--EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 347 HEGKEL-QQT-----------------DRI--SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 347 ~~~~~~-~~~-----------------~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+++... ... .++ +.....+......+|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (268)
T 3mj6_A 157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236 (268)
T ss_dssp EECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence 943211 110 000 000000000112279999999999999999999999998888888885
Q ss_pred E
Q psy670 407 M 407 (540)
Q Consensus 407 ~ 407 (540)
.
T Consensus 237 ~ 237 (268)
T 3mj6_A 237 Q 237 (268)
T ss_dssp C
T ss_pred c
Confidence 4
No 201
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.79 E-value=4.7e-19 Score=162.19 Aligned_cols=250 Identities=14% Similarity=0.182 Sum_probs=103.9
Q ss_pred CceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
|....+.+|+++.|.|.+....+..+.|... ...+.. .+.....+.+.+++.+ +.|+|.+.....
T Consensus 6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~-----------~g~~~~~~~l~~v~~~--~~y~C~~~~~~~ 72 (291)
T 1mq8_A 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL-----------PGNNRKVYELSNVQED--SQPMCYSNCPDG 72 (291)
T ss_dssp CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCC-----------SCSSEEEEEEESCCSC--CCCEEEEECSSC
T ss_pred CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCccccc-----------CCCceEEEEEEecccC--CeEEEEEEcCCc
Confidence 4566788999999999997543334888531 111100 1111225788888744 469999975433
Q ss_pred CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC--eEEEEECCEEccCCCceEEEEEecCCe
Q psy670 292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP--EIVWFHEGKELQQTDRISWNVTLKGDK 368 (540)
Q Consensus 292 ~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
.....+.+.|...|. .+.+. +....+.+|+.++|+|.+.+. |.. .|+|++++..+..... .+..
T Consensus 73 ~~~~~v~l~V~~~P~----~v~I~--~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-------~~~~ 139 (291)
T 1mq8_A 73 QSTAKTFLTVYWTPE----RVELA--PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGEP 139 (291)
T ss_dssp EEEEECEEEECBCCS----CCCBC--CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-------CBTT
T ss_pred cEEEEEEEEEecCCC----CCEEe--cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-------CCCC
Confidence 445556666665432 22222 222347789999999999875 443 5899999987753221 1112
Q ss_pred eEEEEEEcCCCCCCCeeEEEEEEcCCee--------eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccC
Q psy670 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGE--------LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVN 440 (540)
Q Consensus 369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (540)
...+|.+...+.+|.+.|+|+|.|..+. .+....|.|..+|.
T Consensus 140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~------------------------------ 189 (291)
T 1mq8_A 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA------------------------------ 189 (291)
T ss_dssp EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------
T ss_pred ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCC------------------------------
Confidence 2346777777777777999999987542 24445666665210
Q ss_pred cccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCC---ceEEEecCeecCCC-----CeEEEEE----Eec
Q psy670 441 PQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP---SVTWMKEKNTVKED-----NKHVVHI----EQV 508 (540)
Q Consensus 441 ~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~---~v~W~~~~~~l~~~-----~~~~~~~----~~~ 508 (540)
..+.+.. + ..+.+|+.++|.|.+.|.|++ .++|+++|+.+... +...... .+.
T Consensus 190 ------------~~~~~~~-p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~ 254 (291)
T 1mq8_A 190 ------------TPPQLVS-P--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE 254 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CCceecC-C--cCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceeeecCCeEEEEEecceeEc
Confidence 0122322 2 257789999999999997665 69999999988632 2222211 233
Q ss_pred C--CeEEEEEEeeeeeeeeCCeeEEEEEe
Q psy670 509 K--DVSMNFELWLGIVEKRGPSIKIIYYI 535 (540)
Q Consensus 509 ~--~g~y~c~~~~~~~~~~~~~~~~~~~~ 535 (540)
+ .+.|+|.+.+.....++ ...+.+|-
T Consensus 255 ~~~~~~~~C~~~~~~~~~~~-~~~l~v~~ 282 (291)
T 1mq8_A 255 DEGTQRLTCAVILGNQSQET-LQTVTIYS 282 (291)
T ss_dssp -----------------------------
T ss_pred CCCCEEEEEEEEeCCcceEE-EEEEEEEc
Confidence 3 45677888876666665 55555554
No 202
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.79 E-value=1.8e-18 Score=155.46 Aligned_cols=186 Identities=16% Similarity=0.320 Sum_probs=128.2
Q ss_pred CCceeecCCCCeEEEEEEecccCC-CeEEEEeCCEE-----ee----ccCceEEEEe----------cCCCeEEEEEEEe
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKL-----VK----ESSKIKIIVN----------EQDDTYEIICEIT 272 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~-----l~----~~~~~~~~~~----------~~~~~~~~~l~i~ 272 (540)
.+....+.+|+.+.|.|.+.+.+. +.+.|++++.. +. ....+..... .... ..|.|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---~~L~i~ 82 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ---GRLVLA 82 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT---CCEEES
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC---ceEEEc
Confidence 455677889999999999999885 89999985432 11 0111111111 0111 139999
Q ss_pred CCCCCCcEEEEEEEEcCC-CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeE-EEEEEE-EccCCCeEEEEECC
Q psy670 273 DPIGPDSGTYRCNVKNEF-GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV-VMECKV-KAKPMPEIVWFHEG 349 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v-~l~C~~-~~~p~~~i~W~~~~ 349 (540)
+++.+|+|.|+|.+.+.. +.....+.|.|...+. .|.+...+....+.+|+.+ .|.|.+ .+.|.+.+.|+++|
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~----~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~ 158 (231)
T 2pet_A 83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE----ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNG 158 (231)
T ss_dssp SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC----CCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETT
T ss_pred ccCcccCceEEEEEEecCCCceEEEEEEEEEecCC----CcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECC
Confidence 999999999999999986 6667777788776432 3566666666667789988 999999 89999999999999
Q ss_pred EEccCCC----ceEEEE---EecCCee--EEEEEEcCCCCCCCeeEEEEEEc-----CCee-eEEEEEEEE
Q psy670 350 KELQQTD----RISWNV---TLKGDKY--HIRLEVKDPRKEDTGLYKCNIKN-----FHGE-LNANLTLNI 405 (540)
Q Consensus 350 ~~~~~~~----~~~~~~---~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n-----~~g~-~~~~~~l~V 405 (540)
..+.... +..+.. ....+.+ .+.|.|.....+|.|.|+|.|.| ..|. .+..+.|.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp EECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 9987655 332221 1112222 24688886666679999999999 4454 445555544
No 203
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.79 E-value=1e-18 Score=154.59 Aligned_cols=182 Identities=12% Similarity=0.187 Sum_probs=123.5
Q ss_pred ccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
...+ ...+.+|+.++|.|.+. +.+.+.|+++ +..+. ...++..... .....|.|.+++.
T Consensus 5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~ 77 (211)
T 3tv3_L 5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKS----GNTASLTVSGLQT 77 (211)
T ss_dssp BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE----TTEEEEEEESCCG
T ss_pred EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEcc----CCEEEEEECCCCh
Confidence 3344 77788999999999998 8889999994 22211 1122222211 1134799999999
Q ss_pred CCcEEEEEEEEcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc--CCCeEEEEECCEEc
Q psy670 277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK--PMPEIVWFHEGKEL 352 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~~~ 352 (540)
+|+|.|+|.+.+..+ .......|.|...+ ..+|.+...+.......|+.++|.|.+.+. |.+.+.|+++|..+
T Consensus 78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 154 (211)
T 3tv3_L 78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQP---KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV 154 (211)
T ss_dssp GGCEEEEEEEEETTTEEEECCCEEEEECCSC---CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred hHCEEEEEEEecCCCceeECCCceEEEeCCC---CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeec
Confidence 999999999999877 34445666665321 125666555443334479999999999985 35789999999988
Q ss_pred cCCCceEEEEEecCCe--eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 353 QQTDRISWNVTLKGDK--YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
.............++. ..+.|.|..+..+|+|.|+|.|.|..+...+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 155 KAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp CTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred CCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 6532111111112222 2347999998888999999999999877666543
No 204
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.79 E-value=1.5e-18 Score=153.89 Aligned_cols=174 Identities=16% Similarity=0.248 Sum_probs=119.3
Q ss_pred eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EE---eec---------cCceEEEEecCCCeEEEEEEEeCCC
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~~l~i~~~~ 275 (540)
+...+....+.+|+.+.|.|.+.+.|.+.+.|+++. .. +.. ..++..... .....|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~ 79 (213)
T 3nl4_L 4 MTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGS----GTDFTLTISDLE 79 (213)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEECSCC
T ss_pred EEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecC----CCEEEEEECCCC
Confidence 444566778889999999999999989999999842 11 111 122222211 122479999999
Q ss_pred CCCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEE
Q psy670 276 GPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKE 351 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~ 351 (540)
.+|+|.|+|.+.+..+. ......+.|... ..+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|+++|..
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~ 155 (213)
T 3nl4_L 80 CADAATYYCQSTYENPTYVSFGGGTEVGVKGD----PVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTT 155 (213)
T ss_dssp GGGCEEEEEEECCSSTTTCEECCCEEEEEECC----CBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEE
T ss_pred hHHCEEEEEecCCCCceeEEeCCCeEEEEeCC----CcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCcc
Confidence 99999999999987662 334455666441 22555554443344567999999999998 89999999999998
Q ss_pred ccCCCceEEEEE-ecCCe--eEEEEEEcCCCCCCCeeEEEEEE
Q psy670 352 LQQTDRISWNVT-LKGDK--YHIRLEVKDPRKEDTGLYKCNIK 391 (540)
Q Consensus 352 ~~~~~~~~~~~~-~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~ 391 (540)
+........... ..++. ..+.|.|..+..+|+|.|+|.|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 156 QTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred CCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 864320111000 11111 23479999999999999999999
No 205
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.78 E-value=1.1e-18 Score=154.66 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=118.3
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Eee----------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KVI----------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|+++.|.|.+.+.|.+.+.|+|++ ..+ . ...++.... .....+|.|.+++.+|+|
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 84 (213)
T 3d9a_L 10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETEDFG 84 (213)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred cEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-----CCCEEEEEECCCChhhCE
Confidence 456889999999999988888899999843 211 0 112333322 112348999999999999
Q ss_pred EEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCc
Q psy670 177 NYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSK 253 (540)
Q Consensus 177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~ 253 (540)
.|+|.+.+..+.. ...+.|.|.... .+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|+++|..+.....
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 160 (213)
T 3d9a_L 85 MYFCQQSNSWPYTFGGGTKLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 160 (213)
T ss_dssp EEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred EEEEeeecCCcceeCCCEEEEEecCC----CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence 9999999887643 223456665322 2455544333323346889999999987 6665 8999999998865511
Q ss_pred eEEE-EecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 254 IKII-VNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 254 ~~~~-~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
.... .....+ ...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 1111 111122 234589999999999999999999976554
No 206
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.78 E-value=1.3e-18 Score=154.23 Aligned_cols=180 Identities=16% Similarity=0.269 Sum_probs=120.9
Q ss_pred ccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEe----------ec--cCceEEEEecCCCeEEEEEEEeCCCC
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLV----------KE--SSKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l----------~~--~~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
...+..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+ .. ..++..... .....|.|.+++.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~ 80 (213)
T 3d9a_L 5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS----GTDFTLSINSVET 80 (213)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE----TTEEEEEESSCCG
T ss_pred EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcC----CCEEEEEECCCCh
Confidence 34466777889999999999999888899999843 211 00 122222211 1124799999999
Q ss_pred CCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEcc
Q psy670 277 PDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQ 353 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~ 353 (540)
+|+|.|+|.+.+..+.. .....+.|.... .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++|..+.
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~ 156 (213)
T 3d9a_L 81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ 156 (213)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred hhCEEEEEeeecCCcceeCCCEEEEEecCC----CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence 99999999999986643 223456664321 1455544332223347899999999987 5665 899999999886
Q ss_pred CCCceEEEEEec-CC--eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 354 QTDRISWNVTLK-GD--KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 354 ~~~~~~~~~~~~-~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
............ ++ ...+.|.|.++..+|+|.|+|.|.|......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 204 (213)
T 3d9a_L 157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 204 (213)
T ss_dssp TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence 651111111111 11 1245899999999999999999999876643
No 207
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.78 E-value=2.1e-18 Score=155.04 Aligned_cols=172 Identities=11% Similarity=0.251 Sum_probs=121.9
Q ss_pred CccccCCCeEEEEEEEeecCC-CceEEEeCCEeec---------CCCceEEEEe---------ecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPM-PDIIWYQGTKVIE---------DTGRIKMSKK---------SIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~L~i~~~~ 171 (540)
...+.+|+++.|.|.+.+.+. +.+.|++++.... ....+..... ....+. .|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~L~i~~v~ 85 (231)
T 2pet_A 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG---RLVLAEAQ 85 (231)
T ss_dssp EEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC---CEEESSCC
T ss_pred cEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc---eEEEcccC
Confidence 456889999999999988885 8999998654311 0000100000 011111 49999999
Q ss_pred CCCCeEEEEEEEcCC-ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeE-EEEEEe-cccCCCeEEEEeCCEEe
Q psy670 172 KDDGGNYRCNACNSI-GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI-QMKCKC-SAKPRPEVKWFKADKLV 248 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~v~W~~~~~~l 248 (540)
.+|+|.|+|.+.+.. +.....+.|.|...+. .|.+...+....+.+|+.+ .|.|.+ .+.|.+.+.|++++..+
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~----~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~ 161 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPE----ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL 161 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC----CCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEEC
T ss_pred cccCceEEEEEEecCCCceEEEEEEEEEecCC----CcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccC
Confidence 999999999999987 7778888888886433 4566666666677789988 999999 88999999999999988
Q ss_pred eccC----ceEEEEe---cCCCeE--EEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 249 KESS----KIKIIVN---EQDDTY--EIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 249 ~~~~----~~~~~~~---~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
.... ...+... ...+.+ .+.|.|.....+|.|.|+|.|.|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 162 EVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp CCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred ccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 7655 3332211 122222 246888766666799999999994
No 208
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.78 E-value=3.4e-18 Score=154.95 Aligned_cols=214 Identities=12% Similarity=0.155 Sum_probs=118.5
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG---- 187 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---- 187 (540)
..+.+|++++|.|.+. .+.+.|.|+|+|..+..... .. ..........|.|.+++.+|+|.|+|.+.+...
T Consensus 16 ~~V~~G~~VtL~C~~~-~~~~~~~W~k~g~~~~~~~~---~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~ 90 (257)
T 1b6u_A 16 PLVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHL---IG-EHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQL 90 (257)
T ss_dssp SEEESSCCEEEEEEES-SCCSEEEEEEESTTCEEEEE---EC-BCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSC
T ss_pred CEecCCCCEEEEEecC-CCCcEEEEEECCCCCCccee---ee-eccCCCceEEEEeecCCcccCEEEEEeEeccCCCccc
Confidence 4678999999999995 45678999998865421100 00 001112334899999999999999999986421
Q ss_pred -eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 188 -ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 188 -~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
..+..+.|.|.+.. ..|.+...+. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+........ ...+...
T Consensus 91 s~~S~~~~L~V~~~~----~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~---~~~~~~~ 161 (257)
T 1b6u_A 91 SAPSDPLDIVITGLY----EKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGP---KVNGTFQ 161 (257)
T ss_dssp CCCCCCEEEEEECSS----CCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBC---CSSSCCB
T ss_pred cccCCCEEEecccCC----CCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCccccccc---ccCCcee
Confidence 23556677776522 2556655444 3578999999999998754 68999999987654321110 0111123
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccCC
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKPM 340 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p~ 340 (540)
..|.|.+++ |+|.|+|.+.+... ..+..+.|.|...+ .+.. .+.......|..+.|.|.+ |.+.
T Consensus 162 ~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p-------~~~~p~~~~~~~~~g~~~~l~~~~-~~~~ 231 (257)
T 1b6u_A 162 ADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP-------SNSWPSPTEPSSETGNPRHLHAAA-EQKL 231 (257)
T ss_dssp EEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC------------------------------------
T ss_pred EEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC-------CCCCCCCcccCccCCCeEEEEEEE-cchH
Confidence 478999998 99999999997532 23455667776632 2221 1122234568889998765 6677
Q ss_pred CeEEEEECC
Q psy670 341 PEIVWFHEG 349 (540)
Q Consensus 341 ~~i~W~~~~ 349 (540)
+.|.|...+
T Consensus 232 ~~~~~~~~~ 240 (257)
T 1b6u_A 232 ISEEDLNLD 240 (257)
T ss_dssp ---------
T ss_pred HHHHHhhhh
Confidence 788887544
No 209
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.78 E-value=5.1e-19 Score=157.99 Aligned_cols=185 Identities=16% Similarity=0.258 Sum_probs=121.7
Q ss_pred CCccccCCCeEEEEEEEeecCC-----CceEEEeCCEee-------------cCCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 110 KPTIHQDGDLLVMECVLEASPM-----PDIIWYQGTKVI-------------EDTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~-----~~v~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
.++.+.+|++++|.|.+.+.+. +.+.|++++... ....+..+... .......+|.|.+++
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~sL~I~~v~ 80 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPD--LLVQGNASLRLQRVR 80 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTT--TGGGTBCCEEECSCC
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecc--cccCCeEEEEECCcc
Confidence 3466889999999999977654 579999976432 01112211110 001112379999999
Q ss_pred CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEe-CCEEee
Q psy670 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFK-ADKLVK 249 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~-~~~~l~ 249 (540)
.+|+|.|+|.+.+.. .....+.|.|..... .|.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+.
T Consensus 81 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~----~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~ 154 (222)
T 4i0k_A 81 VTDEGSYTCFVSIQD-FDSAAVSLQVAAPYS----KPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLT 154 (222)
T ss_dssp GGGCSCEEEEEEECC-CCCCCCCCCCCBCCC----CCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred cccCEEEEEEEEeCC-CceEEEEEEEEcCCC----CCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCC
Confidence 999999999999753 334455555554221 34554433 3356789999999999 779999999999 444443
Q ss_pred ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670 250 ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304 (540)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~ 304 (540)
......... ........|.|.+++.+|.|.|+|.+.|..|.....+.|.|...
T Consensus 155 ~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 207 (222)
T 4i0k_A 155 GNVTTSQMA--NERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ 207 (222)
T ss_dssp SEEEEEEEE--CTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred CCcceeEEc--CCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence 322222211 22222235788899999999999999999999988888888763
No 210
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.77 E-value=1.9e-18 Score=153.20 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=116.9
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|++ .. +. ...++.... .....+|.|.+++.+|+|
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 84 (213)
T 3nl4_L 10 SVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSG-----SGTDFTLTISDLECADAA 84 (213)
T ss_dssp EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEECSCCGGGCE
T ss_pred eEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEec-----CCCEEEEEECCCChHHCE
Confidence 356889999999999988888999999942 11 10 023333321 112348999999999999
Q ss_pred EEEEEEEcCCc---eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccC
Q psy670 177 NYRCNACNSIG---ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESS 252 (540)
Q Consensus 177 ~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~ 252 (540)
.|+|.+.+..+ .......+.|... ..+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|+++|..+....
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~ 160 (213)
T 3nl4_L 85 TYYCQSTYENPTYVSFGGGTEVGVKGD----PVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGI 160 (213)
T ss_dssp EEEEEECCSSTTTCEECCCEEEEEECC----CBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSE
T ss_pred EEEEecCCCCceeEEeCCCeEEEEeCC----CcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCCe
Confidence 99999998766 3334455666431 13566554444444557999999999998 8999999999999876432
Q ss_pred ceEEE-EecCCC--eEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 253 KIKII-VNEQDD--TYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 253 ~~~~~-~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
..... .....+ ...+.|.|.++..+|.|.|+|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 161 ENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred ecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 01111 111122 223579999999999999999999
No 211
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.77 E-value=5.1e-18 Score=150.23 Aligned_cols=181 Identities=13% Similarity=0.196 Sum_probs=119.7
Q ss_pred CceeecCCCCeEEEEEEecccC---CCeEEEEeCC--EEee------------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP---RPEVKWFKAD--KLVK------------ESSKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~--~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
+....+.+|+.++|.|.+.+.| .+.+.|++++ ..+. ...++..... .....|.|.+++.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~ 82 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI----GDKAALTITGAQT 82 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCG
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEee----CCEEEEEECCCCc
Confidence 6677788999999999998876 4689999853 2220 0122222211 1124799999999
Q ss_pred CCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-CC-eEEEEECCEEcc
Q psy670 277 PDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP-MP-EIVWFHEGKELQ 353 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~-~i~W~~~~~~~~ 353 (540)
+|+|.|.|.+.+..+.. .....+.|...+ ..+|.+...+.......|+.++|.|.+.+.+ ++ .|.|+++|..+.
T Consensus 83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 159 (212)
T 1q0x_L 83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQP---KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT 159 (212)
T ss_dssp GGCEEEEEEEECSSCEEECCCEEEEECCSC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred cCCEEEEEEEecCchhhcCCCeEEEEecCC---CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC
Confidence 99999999999876532 233455553221 1256655433333344689999999999854 43 899999999886
Q ss_pred CCCceEEEEEecCC--eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 354 QTDRISWNVTLKGD--KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 354 ~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
............++ ...+.|.|..+..+|+|.|+|.|.|......+++
T Consensus 160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 54221101111111 2235799999989999999999999887655443
No 212
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.77 E-value=8.2e-19 Score=155.48 Aligned_cols=172 Identities=13% Similarity=0.027 Sum_probs=119.4
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEE--EEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL--RLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... .. ...... .|.|.+++.+|+|.|+|.+.+..+..
T Consensus 18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~ 90 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RL-----KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRF 90 (218)
T ss_dssp SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-EC-----C----CCCEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cC-----CCCcceeeEEEEcccccccCEEEEEEEEcCCCce
Confidence 36789999999999965 67799999988765322110 00 001122 79999999999999999999976533
Q ss_pred --EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670 190 --NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 190 --~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (540)
+..+.|.|.... .+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+... .. .. . ...
T Consensus 91 ~~s~~~~l~V~~~~----~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~~--~~-~---~~~ 157 (218)
T 1uct_A 91 RYSDTLELVVTGLY----GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQ--SG-E---HPA 157 (218)
T ss_dssp EECCCEEEEEECSS----CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EE--EC-S---SSE
T ss_pred eecCCEEEEEcCcc----cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--cc--CC-C---ccC
Confidence 345667776422 145554444 346789999999997777778899999999876541 11 11 1 113
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEee
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEA 303 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~ 303 (540)
.|.|.+++.+|+|.|+|.|.+... ..+..+.|.|..
T Consensus 158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 158 NFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp EEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred EEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence 799999999999999999998532 234456666654
No 213
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.77 E-value=3.6e-18 Score=150.98 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=117.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|+ +..+ ....++.... ......|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 83 (210)
T 1lk3_L 9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-----SGTDFTLTIDPVEADDTA 83 (210)
T ss_dssp EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred cEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-----cCCEEEEEECCCCHHHCe
Confidence 45688999999999998888889999984 2221 0112333322 112348999999999999
Q ss_pred EEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCc
Q psy670 177 NYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSK 253 (540)
Q Consensus 177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~ 253 (540)
.|+|.+.+..+.. .....|.|.... .+|.+...+.......|+.++|.|.+.+ .|++ .|.|+++|..+.....
T Consensus 84 ~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 159 (210)
T 1lk3_L 84 IYFCQQSWNGPLTFGAGTKLELKRAD----AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL 159 (210)
T ss_dssp EEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred EEEEEEEcCCCceeCCCEEEEEcCCC----cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence 9999999876543 223456665321 2455544333323347999999999987 5554 8999999998765411
Q ss_pred eEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 254 IKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 254 ~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
... ......+ ...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 111 1111222 234589999999999999999999976543
No 214
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.77 E-value=1.4e-18 Score=160.06 Aligned_cols=198 Identities=17% Similarity=0.248 Sum_probs=119.9
Q ss_pred CCccccCCCeEEEEEEEe---ecCCCceEEEeCCEeecCC------------------CceEEEEeecCcceEEEEEEEc
Q psy670 110 KPTIHQDGDLLVMECVLE---ASPMPDIIWYQGTKVIEDT------------------GRIKMSKKSIGKDTYLLRLEIN 168 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~---~~p~~~v~W~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~L~i~ 168 (540)
....+.+|++++|.|.+. +.+.+.+.|++++...... .+..+.... .....+|.|.
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~ 89 (268)
T 3mj6_A 13 PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDT---FHNDGSLLLQ 89 (268)
T ss_dssp CEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCT---TTTBCCEEEC
T ss_pred CceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecC---CCCEEEEEEC
Confidence 346788999999999996 5667789999965432111 222221110 0111379999
Q ss_pred CCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe---cccCCCeEEEEe
Q psy670 169 NPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC---SAKPRPEVKWFK 243 (540)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~ 243 (540)
+++.+|+|.|+|.+.+..+.. ...+.|.|.. ..+....+.+|+.+.|.|.+ .+.|.+.+.|++
T Consensus 90 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~------------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~ 157 (268)
T 3mj6_A 90 DVQKADEGIYTCEIRLKNESMVMKKPVELWVLP------------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF 157 (268)
T ss_dssp SCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC------------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEE
T ss_pred CCCHhHCEEEEEEEEecCCcceEEEEEEEEEec------------cCCCccccccCCcEEEEEEecCCCCCCccceEEEe
Confidence 999999999999999875543 4455555541 12345677889999999999 567899999999
Q ss_pred CCEE-eeccCce-------------------EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 244 ADKL-VKESSKI-------------------KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 244 ~~~~-l~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
++.. ....... ..............|.|.+++.+|+|.|+|.|.|..+.....+.|.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237 (268)
T ss_dssp ECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence 4321 1110000 0000000001123799999999999999999999888888888888754
Q ss_pred ccCCCCCCCeEEeCCceEEeeCCCe
Q psy670 304 EAEPEGDPPTFIEKPKIRSEQGGKL 328 (540)
Q Consensus 304 ~~~~~~~~p~~~~~~~~~~~~~g~~ 328 (540)
. +|.+...|....+.+|+.
T Consensus 238 ~------~p~~~~~p~~~~~~~~q~ 256 (268)
T 3mj6_A 238 D------EFQRTISPTPPTDKGQQG 256 (268)
T ss_dssp C------------------------
T ss_pred C------CCeeeeCCCCCCCCccee
Confidence 3 444444455444544444
No 215
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.77 E-value=4.4e-18 Score=150.43 Aligned_cols=176 Identities=15% Similarity=0.223 Sum_probs=118.5
Q ss_pred CceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEe---e---------ccCceEEEEecCCCeEEEEEEEeCCCCCCc
Q psy670 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLV---K---------ESSKIKIIVNEQDDTYEIICEITDPIGPDS 279 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 279 (540)
|....+.+|+.++|.|.+.+.|.+.+.|+++. ..+ . ...++..... .....|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~ 82 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS----GTDFTLTIDPVEADDT 82 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGC
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEec----CCEEEEEECCCCHHHC
Confidence 66778889999999999999888899999842 221 0 0122222211 1124799999999999
Q ss_pred EEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCC
Q psy670 280 GTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTD 356 (540)
Q Consensus 280 g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~ 356 (540)
|.|+|.+.+..+.. .....+.|.... .+|.+...+.......|+.++|.|.+.| .|.+ .|.|+++|..+....
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~ 158 (210)
T 1lk3_L 83 AIYFCQQSWNGPLTFGAGTKLELKRAD----AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGV 158 (210)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTE
T ss_pred eEEEEEEEcCCCceeCCCEEEEEcCCC----cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCc
Confidence 99999999876543 223456664321 2455554333223447999999999997 4554 899999999886541
Q ss_pred ceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 357 RISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 357 ~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
........ ++. ...+.|.|..+..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 159 LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 11111111 111 224589999999999999999999987643
No 216
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.77 E-value=5e-18 Score=147.03 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=115.4
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--E
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--N 190 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~ 190 (540)
.+.+|++++|.|.+.+ +.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+.+..+.. +
T Consensus 14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s 86 (188)
T 1oll_A 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS 86 (188)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCC
T ss_pred cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc------cCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCC
Confidence 5789999999999854 45689999999876421000 0011122389999999999999999998865432 4
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+.|.|.+.. .+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+... ... ......|.
T Consensus 87 ~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~----~~~----~~~~~~L~ 152 (188)
T 1oll_A 87 NLLDLVVTEMY----DTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ----RGY----GKVQAEFP 152 (188)
T ss_dssp CCEEEEEESCS----CCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEE----EEE----CSSEEEEE
T ss_pred CceEEEecccC----CCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCcccccc----ccC----CCceeEEE
Confidence 55667776421 145554444 3456789999999998764 5689999998766431 111 11224799
Q ss_pred EeCCCCCCcEEEEEEEEcCCC---CeeeeEEEEE
Q psy670 271 ITDPIGPDSGTYRCNVKNEFG---ESNANLNLNI 301 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~---~~~~~~~l~v 301 (540)
|.+++.+|+|.|+|.+.|... ..+..+.|.|
T Consensus 153 I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V 186 (188)
T 1oll_A 153 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186 (188)
T ss_dssp EEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred ECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence 999999999999999998642 2334445544
No 217
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.77 E-value=1.9e-17 Score=145.09 Aligned_cols=172 Identities=15% Similarity=0.209 Sum_probs=118.3
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+......... ........|.|.+++.+|+|.|+|.+
T Consensus 8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~---~~~~~~~~l~I~~v~~~D~G~Y~C~a 82 (201)
T 1nkr_A 8 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEH---HDGVSKANFSISRMTQDLAGTYRCYG 82 (201)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEE---ETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeec---CCCCceEEEEeccCCcccCeEEEEeE
Confidence 556655554 56778999999999974 67799999998765432110000 11223457999999999999999999
Q ss_pred EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670 287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361 (540)
Q Consensus 287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 361 (540)
.+... ..+..+.|.|.... .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+++|..+.......
T Consensus 83 ~~~~~~~~~~~~s~~~~l~V~~~~----~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~-- 154 (201)
T 1nkr_A 83 SVTHSPYQVSAPSDPLDIVIIGLY----EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAG-- 154 (201)
T ss_dssp EBTTBTTCCCCCCCCEEEEEECSS----CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECE--
T ss_pred ecCCCCccccCCCCCEEEEeeccC----CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccc--
Confidence 86431 23455677776532 2566665554 46789999999999876 567999999998764322111
Q ss_pred EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
..........|.|.+++ |+|.|+|.|.+..
T Consensus 155 -~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 155 -PKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp -EEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred -cccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 11112224489999998 9999999999764
No 218
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.77 E-value=8.6e-19 Score=156.50 Aligned_cols=184 Identities=17% Similarity=0.215 Sum_probs=121.6
Q ss_pred eeecCCCCeEEEEEEecccCC-----CeEEEEeCCEEeec----cC-------ceEEEEec-CCCeEEEEEEEeCCCCCC
Q psy670 216 IIPNESGTLIQMKCKCSAKPR-----PEVKWFKADKLVKE----SS-------KIKIIVNE-QDDTYEIICEITDPIGPD 278 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p~-----~~v~W~~~~~~l~~----~~-------~~~~~~~~-~~~~~~~~l~i~~~~~~d 278 (540)
.+.+.+|+++.|.|.+.+.|. +.+.|++++..... .. ........ ........|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 345678999999999987654 67999997643210 00 00000000 000012369999999999
Q ss_pred cEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEEC-CEEccCCC
Q psy670 279 SGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHE-GKELQQTD 356 (540)
Q Consensus 279 ~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~-~~~~~~~~ 356 (540)
+|.|+|.+.+. +.....+.|.|...+ .+|.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|+++ +..+....
T Consensus 84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~----~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~ 157 (222)
T 4i0k_A 84 EGSYTCFVSIQ-DFDSAAVSLQVAAPY----SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNV 157 (222)
T ss_dssp CSCEEEEEEEC-CCCCCCCCCCCCBCC----CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEE
T ss_pred CEEEEEEEEeC-CCceEEEEEEEEcCC----CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCc
Confidence 99999999985 334444555554422 135554444 3456789999999999 7899999999994 54443322
Q ss_pred ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 357 RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
. .............|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 158 ~--~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 206 (222)
T 4i0k_A 158 T--TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG 206 (222)
T ss_dssp E--EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred c--eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence 2 222223333334688889999999999999999999999999999887
No 219
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=143.96 Aligned_cols=163 Identities=15% Similarity=0.220 Sum_probs=111.4
Q ss_pred CCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeec---cCc----e---------EEEEecCCCeEEEEEEEeCCC
Q psy670 213 KPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKE---SSK----I---------KIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~---~~~----~---------~~~~~~~~~~~~~~l~i~~~~ 275 (540)
.+..+.+.+|++++|.|.+.+ .+.+.|.|++++..+.. ... . +.... . ...|.|.+++
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~----~~sL~I~~v~ 78 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-Q----SYSLQLSNLK 78 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-T----TCCEEECSCC
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-C----CeEEEECCCC
Confidence 345667788999999999975 45578999999865421 000 0 01111 1 1369999999
Q ss_pred CCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCC-eEEEEEEEEcc-CCCeEEEEECCEEcc
Q psy670 276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK-LVVMECKVKAK-PMPEIVWFHEGKELQ 353 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~-~v~l~C~~~~~-p~~~i~W~~~~~~~~ 353 (540)
.+|+|.|+|.+.+..+.....+.|.|...+ ..|.+...+ .....|. .++|.|.+.+. |.+.+.|+++|..+.
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~----~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~ 152 (193)
T 2if7_A 79 MEDTGSYRAQISTKTSAKLSSYTLRILRQL----RNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS 152 (193)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEECCC----EEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred cccCceEEEEEEecCCCeEEEEEEEEEccC----CCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence 999999999999988766666777775421 123343332 1233455 89999999985 588999999998663
Q ss_pred CCCceEEEEEecCCeeEEEEEEcCCCCC-CCeeEEEEEEcCCeeeEEEE
Q psy670 354 QTDRISWNVTLKGDKYHIRLEVKDPRKE-DTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~ 401 (540)
... .|.|.....+ |+|.|+|.|.|..|..+..+
T Consensus 153 ~~~---------------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~ 186 (193)
T 2if7_A 153 SQP---------------NLTVSWDPRISSEQDYTCIAENAVSNLSFSV 186 (193)
T ss_dssp SSS---------------EEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred CCC---------------eEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence 321 4555443443 89999999999999875543
No 220
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.76 E-value=6.6e-18 Score=149.51 Aligned_cols=174 Identities=15% Similarity=0.178 Sum_probs=116.1
Q ss_pred CccccCCCeEEEEEEEeecC---CCceEEEeCC--Eee------------cCCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASP---MPDIIWYQGT--KVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 173 (540)
...+.+|++++|.|.+.+.| .+.+.|+|++ ..+ ....++.... ....+.|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~ 83 (212)
T 1q0x_L 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-----IGDKAALTITGAQTE 83 (212)
T ss_dssp EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-----eCCEEEEEECCCCcc
Confidence 45688999999999998877 4689999952 222 1123333322 112348999999999
Q ss_pred CCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEEeec
Q psy670 174 DGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKLVKE 250 (540)
Q Consensus 174 d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~l~~ 250 (540)
|+|.|.|.+.+..+.. .....|.|..... .+|.+...+.......|+.++|.|.+.+. |++ .|.|+++|..+..
T Consensus 84 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~ 160 (212)
T 1q0x_L 84 DEAIYFCALWSNNKLVFGGGTKLTVLGQPK---SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA 160 (212)
T ss_dssp GCEEEEEEEECSSCEEECCCEEEEECCSCC---BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred CCEEEEEEEecCchhhcCCCeEEEEecCCC---CCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence 9999999999876542 2334566643211 25555443333334468999999999884 443 8999999998865
Q ss_pred cCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 251 SSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 251 ~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
............+ ...+.|.|..+..+|.|.|+|.|.|....
T Consensus 161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 161 GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp TEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred CeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 4221111111222 23457899999999999999999997544
No 221
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.76 E-value=5.2e-18 Score=151.01 Aligned_cols=182 Identities=15% Similarity=0.238 Sum_probs=117.1
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+....+.+|++++|.|.+.+.+ .+.+.|+++ +..+. ...++.+.... ......|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~ 84 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLET--SATTAYLQIN 84 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEG--GGTEEEEEEC
T ss_pred CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEec--CCCEEEEEEC
Confidence 3455678999999999998865 678999996 33221 01222222211 1113479999
Q ss_pred CCCCCCcEEEEEEEEcCCCC----eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEE
Q psy670 273 DPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWF 346 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~ 346 (540)
+++.+|+|.|.|.+.+..+. ......+.|.... ..+|.+...+....+.+|+.+.|.|.+.+ .|.| .|.|+
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 161 (219)
T 1c1e_H 85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN 161 (219)
T ss_dssp SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC---CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred CCCcccCEEEEEEEeccCcccceeecCceEEEEecCC---CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEE
Confidence 99999999999999987632 1234556665421 12455544332234568999999999998 8988 99999
Q ss_pred ECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 347 HEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
++|..+........ ...+. ...+.|.|..... |.|.|+|.|.|..+.......|
T Consensus 162 ~~g~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i 216 (219)
T 1c1e_H 162 SGSLSSGVHTFPAV--LQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI 216 (219)
T ss_dssp GGTBCTTEEECCCE--ESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred eCCcccceEecCCc--ccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence 99876532110000 11121 2234788855444 6699999999998876555544
No 222
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.76 E-value=5.5e-18 Score=150.84 Aligned_cols=178 Identities=16% Similarity=0.266 Sum_probs=115.4
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.+ .+.+.|+|+ +..+. ...++.+.... .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~ 85 (219)
T 1c1e_H 9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLET---SATTAYLQINN 85 (219)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEG---GGTEEEEEECS
T ss_pred CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEec---CCCEEEEEECC
Confidence 45688999999999998765 678999996 33221 12333333221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCc----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEe
Q psy670 170 PTKDDGGNYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFK 243 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~ 243 (540)
++.+|+|.|+|.+.+..+ .....+.|.|..... .+|.+...+....+.+|+.+.|.|.+.+ +|.+ .|.|++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 162 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT---TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 162 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC---BCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCC---CCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEe
Confidence 999999999999998763 122345666664211 2455543333345678999999999998 8988 999999
Q ss_pred CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeee
Q psy670 244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN 296 (540)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 296 (540)
++..+........ .........+.|.|..... |.|.|+|.|.|..+.....
T Consensus 163 ~g~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~ 213 (219)
T 1c1e_H 163 GSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVD 213 (219)
T ss_dssp GTBCTTEEECCCE-ESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEE
T ss_pred CCcccceEecCCc-ccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEE
Confidence 9876421111001 1111112335788855544 5599999999987764433
No 223
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.76 E-value=9.6e-18 Score=145.75 Aligned_cols=157 Identities=11% Similarity=0.182 Sum_probs=109.5
Q ss_pred CccccCCCeEEEEEEEee-cCCCceEEEeCCEeec---CCC---------------ceEEEEeecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIE---DTG---------------RIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~---~~~---------------~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
.+.+.+|++++|.|.+.+ .+.+.+.|++++..+. ... +..+. . ..+|.|.+++
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~---~~sL~I~~v~ 78 (193)
T 2if7_A 7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-----Q---SYSLQLSNLK 78 (193)
T ss_dssp EEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-----T---TCCEEECSCC
T ss_pred EEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-----C---CeEEEECCCC
Confidence 456789999999999864 4556899999876542 110 11111 1 1379999999
Q ss_pred CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCC-eEEEEEEecc-cCCCeEEEEeCCEEee
Q psy670 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT-LIQMKCKCSA-KPRPEVKWFKADKLVK 249 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~-~p~~~v~W~~~~~~l~ 249 (540)
.+|+|.|+|.+.+..+.....+.|.|...+. .|.+...+ .....|. .++|.|.+.+ .|.+.+.|++++..+.
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~----~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~ 152 (193)
T 2if7_A 79 MEDTGSYRAQISTKTSAKLSSYTLRILRQLR----NIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS 152 (193)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEECCCE----EEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred cccCceEEEEEEecCCCeEEEEEEEEEccCC----CCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence 9999999999999888766778888875221 23343322 1233465 8999999998 4588999999998764
Q ss_pred ccCceEEEEecCCCeEEEEEEEeCCCCC-CcEEEEEEEEcCCCCeeee
Q psy670 250 ESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEFGESNAN 296 (540)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~~~~ 296 (540)
... .|.|.....+ |.|.|+|.|.|..|..+..
T Consensus 153 ~~~---------------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~ 185 (193)
T 2if7_A 153 SQP---------------NLTVSWDPRISSEQDYTCIAENAVSNLSFS 185 (193)
T ss_dssp SSS---------------EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred CCC---------------eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence 322 3555433444 8999999999998876443
No 224
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.76 E-value=2.1e-18 Score=152.56 Aligned_cols=175 Identities=18% Similarity=0.194 Sum_probs=119.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+. +.+.+.|+|+ +..+. ...++.... .....+|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 81 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-----SGNTASLTVSGLQTDDEA 81 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEEESCCGGGCE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-----cCCEEEEEECCCChhHCE
Confidence 45688999999999997 8889999994 22211 123333322 112348999999999999
Q ss_pred EEEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc--CCCeEEEEeCCEEeeccC
Q psy670 177 NYRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKADKLVKESS 252 (540)
Q Consensus 177 ~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~l~~~~ 252 (540)
.|+|.+.+..+ .....+.|.|.... ..+|.+...+....+..|+.+.|.|.+.+. |.+.+.|+++|..+....
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 158 (211)
T 3tv3_L 82 VYYCGSLVGNWDVIFGGGTKLTVLGQP---KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV 158 (211)
T ss_dssp EEEEEEEETTTEEEECCCEEEEECCSC---CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred EEEEEEecCCCceeECCCceEEEeCCC---CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCc
Confidence 99999999877 34455667776321 125666554444444479999999999884 357899999999886532
Q ss_pred ceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670 253 KIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 253 ~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 295 (540)
..........+ ...+.|.|.++..+|.|.|+|.|.|..+....
T Consensus 159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~ 203 (211)
T 3tv3_L 159 ETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK 203 (211)
T ss_dssp EECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred ccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence 11111111222 23357889998888999999999998754443
No 225
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.75 E-value=1.8e-17 Score=145.27 Aligned_cols=162 Identities=10% Similarity=0.155 Sum_probs=105.5
Q ss_pred ccceeee----CcceeEEeecceeeeeecCeeccc------------CCceEEEEecCccceeeEEEEEEcccccCCCee
Q psy670 7 LKSYTLE----GEPTKQIEANFQMNMYHKGSLLKM------------SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70 (540)
Q Consensus 7 ~~~c~~~----g~p~~~~~~~~~~~W~k~~~~l~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 70 (540)
.+.|.+. |.|. +.+.|+|++..+.. ..+..+....+ .+|.|.+++.+|+|.
T Consensus 13 ~L~C~~~~~~~~~~~------~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~-------~~L~I~~v~~~D~G~ 79 (201)
T 1dr9_A 13 TLSCGHNVSVEELAQ------TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN-------LSIVILALRPSDEGT 79 (201)
T ss_dssp EECCSCCCCTTHHHH------CEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT-------TEEEECSCCGGGCEE
T ss_pred EEecccCCCcccccc------cEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCC-------cEEEEecccchhCeE
Confidence 3668875 3455 89999999987621 12222211112 489999999999999
Q ss_pred EEEEEEccCcce-----eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeec
Q psy670 71 YKVIAKNKNGEG-----SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIE 144 (540)
Q Consensus 71 Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~ 144 (540)
|+|.+.+..|.. ...+.|.|...+..+.+. ......|+.+.|.|.+ .|.|.+.|.|+++|..+.
T Consensus 80 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~----------~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~ 149 (201)
T 1dr9_A 80 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSIS----------DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELN 149 (201)
T ss_dssp EEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEE----------EEECSSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred EEEEEEcCCCCccccccccEEEEEEcCCCCCCceE----------eccCCCCCeEEEEEecCCccCCCEEEEEECCEECc
Confidence 999999977654 345666666543111111 0112458999999999 589999999999998886
Q ss_pred CCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 145 DTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 145 ~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
.... ....... +.....+.|.+ ..+|.|.|+|.|.|..+..+..+.+
T Consensus 150 ~~~~-~~~~~~~~~~~~~~~~~~v---~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 150 AINT-TVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp CSEE-EEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred cccc-eEEecCCCcEEEEEEEEEE---EecCCCEEEEEEecCcceeeeEEec
Confidence 5422 2221111 11111123333 4589999999999999887766654
No 226
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.75 E-value=7e-18 Score=150.52 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=118.7
Q ss_pred eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---ee----c------------cCceEEEEecCCCeEEEEEEEe
Q psy670 216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VK----E------------SSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~----~------------~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
...+.+|++++|.|.+.+.+ .+.+.|++.. .. +. . ..++.+..... .....|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~ 86 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS--QSILYLQMN 86 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT--TTEEEEEEC
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECC--CCeEEEEEC
Confidence 45677899999999998765 6789999843 21 10 0 12333322211 123579999
Q ss_pred CCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670 273 DPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVW 345 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W 345 (540)
+++.+|+|.|.|.+.+..+ .......+.|...+ ..+|.+...+....+..|+.++|.|.+.|. |.| .|.|
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 163 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 163 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC---CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEE
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC---CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEE
Confidence 9999999999999998654 22234566665421 124555443322235679999999999985 888 9999
Q ss_pred EECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 346 FHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
+++|..+... ... ....++. ...+.|.|..+..+| |.|+|.|.|..|.......+
T Consensus 164 ~~~g~~~~~~-~~~-~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 164 NSGSLSSGVH-TFP-AVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp GGGTBCTTEE-EEE-EEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred ecCCeEcceE-ecc-ccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 9998765432 111 1112221 123479999999889 99999999998876555444
No 227
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.75 E-value=2.7e-17 Score=147.94 Aligned_cols=180 Identities=14% Similarity=0.174 Sum_probs=125.0
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
.|.+...+.. .+.+|++++|.|.+.+ +...+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+
T Consensus 7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 79 (242)
T 1p6f_A 7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIY 79 (242)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-----cccCCcceeEEEecCCCcccCeEEEEEE
Confidence 5666655655 6788999999999875 4568999999987642110 0011223357999999999999999999
Q ss_pred EcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670 287 KNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364 (540)
Q Consensus 287 ~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 364 (540)
.+..+. .+..+.|.|.... .+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+++|..+.. .. ..
T Consensus 80 ~~~~~~s~~S~~~~L~V~~~~----~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~--~~ 147 (242)
T 1p6f_A 80 RVGELWSEPSNLLDLVVTEMY----DTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QR--GY 147 (242)
T ss_dssp EETTEECCCCCCEEEEEECCS----CCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EE--EE
T ss_pred ecCCccccCCcceEEEeeccc----CCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cc--cC
Confidence 875432 3455677776422 2556655443 457899999999998754 469999999876543 11 11
Q ss_pred cCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-e--eeEEEEEEEEEE
Q psy670 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFH-G--ELNANLTLNIEM 407 (540)
Q Consensus 365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g--~~~~~~~l~V~~ 407 (540)
.. ....|.|.+++.+|+|.|+|.+.|.. . ..+..+.|.|..
T Consensus 148 ~~--~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 148 GK--VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp CS--SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred CC--ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence 11 12389999999999999999999864 2 234556666665
No 228
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.75 E-value=1.5e-18 Score=159.83 Aligned_cols=210 Identities=16% Similarity=0.223 Sum_probs=113.0
Q ss_pred cccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeC--C
Q psy670 63 VQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQG--T 140 (540)
Q Consensus 63 ~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~ 140 (540)
.+.+|.+.|.|++.+..|.......+.|... ...+.+.+|++++|.|.+.+ +.+.+.|+|. +
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~---------------p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~ 66 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGGGMKVIQT---------------PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKN 66 (270)
T ss_dssp -------------------------CCCEEE---------------CSEEEEETTSCEEEEEECCT-TCCEEEEEEECTT
T ss_pred chhhhHHHHHHHHhccCCccccccceeEEeC---------------CCeEEEcCCCCEEEEEEecC-CCceEEEEEECCC
Confidence 3678999999999988765544443333322 22456889999999999854 6779999982 2
Q ss_pred Eee----c-CCC-----------ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----eeEEEEEEEEecC
Q psy670 141 KVI----E-DTG-----------RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG----ESNANIALNFQGG 200 (540)
Q Consensus 141 ~~~----~-~~~-----------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~ 200 (540)
... . ... ++.+.. ......+|.|.+++.+|+|.|.|.+.+... .....+.|.|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~ 142 (270)
T 3qib_D 67 NEFKFLINFQNQEVLQQIDMTEKRFSAEC----PSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLED 142 (270)
T ss_dssp CCEEEEEEEETTEEEEECHHHHHHEEEEC----CTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESC
T ss_pred CCcEEEEEECCCCceecCCccCCcEEEEe----CCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccc
Confidence 111 0 000 222221 112234899999999999999999986431 2233445666542
Q ss_pred cCCCCCCCeec-cCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEE-----E--ecCCCeEEEEEE
Q psy670 201 ENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKII-----V--NEQDDTYEIICE 270 (540)
Q Consensus 201 ~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~-----~--~~~~~~~~~~l~ 270 (540)
... ..+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+......... . .+......+.|.
T Consensus 143 ~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~ 221 (270)
T 3qib_D 143 LKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLR 221 (270)
T ss_dssp STT-CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEE
T ss_pred ccc-ccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEE
Confidence 111 1134332 2233334456999999999988 6766 89999999988653221100 0 011122235678
Q ss_pred EeCCCCCC-cEEEEEEEEcCCCCe
Q psy670 271 ITDPIGPD-SGTYRCNVKNEFGES 293 (540)
Q Consensus 271 i~~~~~~d-~g~y~C~~~~~~~~~ 293 (540)
|.....+| .|.|+|.+.|.....
T Consensus 222 i~~~~~~d~~g~YtC~v~~~~l~~ 245 (270)
T 3qib_D 222 VSATFWQNPRNHFRCQVQFYGLSE 245 (270)
T ss_dssp EEHHHHHSTTCEEEEEEEECCBCT
T ss_pred EcHHHhccCCCeEEEEEEecCCCC
Confidence 88877777 999999999875543
No 229
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.75 E-value=7e-18 Score=150.09 Aligned_cols=176 Identities=16% Similarity=0.214 Sum_probs=115.0
Q ss_pred CccccCCCeEEEEEEEeec-CCCceEEEeCC---Ee--e-c------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQGT---KV--I-E------------DTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~---~~--~-~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
...+.+|++++|.|.+.+. |.+.+.|+|.. .. + . ...++.+.. .....+|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~ 83 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-----SGADRYLSISNIQ 83 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-----ETTEEEEEESSCC
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-----CCceEEEEEccCC
Confidence 4568899999999999888 88999999931 11 0 0 011332221 1123489999999
Q ss_pred CCCCeEEEEEEEcCCc-----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670 172 KDDGGNYRCNACNSIG-----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA 244 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~ 244 (540)
.+|+|.|+|.+.+..+ .....+.|.|...+. .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~ 160 (218)
T 3s96_B 84 PEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK---STPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN 160 (218)
T ss_dssp GGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred cccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC---CCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence 9999999999998765 233455677764221 2555544333334445789999999988 6766 8999999
Q ss_pred CEEeeccCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 245 DKLVKESSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
|..+........... .......+.|.|.....+|.|.|+|.|.|..+...
T Consensus 161 g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~ 211 (218)
T 3s96_B 161 GTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE 211 (218)
T ss_dssp TEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred CEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence 998865322111111 11122234588888888899999999999876443
No 230
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.75 E-value=2.5e-18 Score=150.71 Aligned_cols=161 Identities=19% Similarity=0.367 Sum_probs=107.2
Q ss_pred cCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 298 (540)
+.+|++++|.|.+ |.+.+.|+|+|..+.... ... ..|.|.+++.+|+|.|+|.+.+.. +..+.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~-------~~~----~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~ 77 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-------EDK----KKWNLGSNAKDPRGMYQCKGSQNK---SKPLQ 77 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE-------SSC----CCEEEEEGGGCCEEEEEEESSSSC---CCCEE
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC-------CCC----CeEEeCCCCcCCCEEEEEEecCCC---CeeEE
Confidence 3579999999998 788999999998875421 011 268899999999999999965432 22244
Q ss_pred EEEeec------c------------------CCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC
Q psy670 299 LNIEAE------A------------------EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ 354 (540)
Q Consensus 299 l~v~~~------~------------------~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~ 354 (540)
+.+... . .....++.+...+. ....+|+.++|.|. +.|.+.+.|+++|..+..
T Consensus 78 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~ 154 (204)
T 1sy6_A 78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGG 154 (204)
T ss_dssp EEEEC------------------------------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred EEEEEeccccccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence 444300 0 00000222222222 22238999999999 789999999999998865
Q ss_pred CCc-eEEEEEecCCeeEEEEEEcCC-CCCCCeeEEEEEEcCCeee-EEEEEEEE
Q psy670 355 TDR-ISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCNIKNFHGEL-NANLTLNI 405 (540)
Q Consensus 355 ~~~-~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 405 (540)
... ..+.. .+. .|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 155 ~~~~~~~~~--~~~----~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 155 DEDDKNIGS--DED----HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp CTTCTTEEE--ETT----EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ccCCceEec--CCC----EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 321 11111 122 8999999 9999999999999999863 45555554
No 231
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.75 E-value=1.1e-17 Score=149.23 Aligned_cols=179 Identities=16% Similarity=0.267 Sum_probs=117.5
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---ec----------------CCCceEEEEeecCcceEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---IE----------------DTGRIKMSKKSIGKDTYLLRLEI 167 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~~~~L~i 167 (540)
+..+.+|++++|.|.+.+.+ .+.+.|+|++ .. +. ...++.+..+. .....+|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I 85 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDN---SQSILYLQM 85 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEET---TTTEEEEEE
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEEC---CCCeEEEEE
Confidence 34678999999999998765 6789999842 21 10 01334333221 112348999
Q ss_pred cCCCCCCCeEEEEEEEcCCc-----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEE
Q psy670 168 NNPTKDDGGNYRCNACNSIG-----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVK 240 (540)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~ 240 (540)
.+++.+|+|.|.|.+.+..+ .....+.|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~ 162 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT 162 (222)
T ss_dssp CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC---CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC---CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEE
Confidence 99999999999999998654 22233466665421 124555433333345679999999999984 888 999
Q ss_pred EEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670 241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL 297 (540)
Q Consensus 241 W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 297 (540)
|+++|..+.... .............+.|.|.++..+| |.|+|.|.|..+......
T Consensus 163 W~~~g~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~ 217 (222)
T 1q9r_B 163 WNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 217 (222)
T ss_dssp EGGGTBCTTEEE-EEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EecCCeEcceEe-ccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence 999987653221 1111111112223478999999889 999999999887654443
No 232
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.75 E-value=1e-17 Score=152.30 Aligned_cols=181 Identities=14% Similarity=0.201 Sum_probs=114.5
Q ss_pred CccccCCCeEEEEEEEeecCCCc-----eEEEeCCEeecCC--------C-------ceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPD-----IIWYQGTKVIEDT--------G-------RIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~-----v~W~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
...+.+|++++|.|.+.+.|.+. +.|+|++...... . +..+.... .....++|.|.++
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sL~I~~v 89 (248)
T 3pv7_A 12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWR--LKSGDASLRLPGI 89 (248)
T ss_dssp EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHH--HTTTBCCEEESSC
T ss_pred CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEecc--CCCCcEEEEeCCC
Confidence 34678999999999998887765 9999964321100 0 00000000 0011236999999
Q ss_pred CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEe
Q psy670 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLV 248 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l 248 (540)
+.+|+|.|+|.+.+..+.....+.|.|.. +|.+...+.. ....|+.+.|.|.+.+ +|.+ .+.|++++..+
T Consensus 90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~-------~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l 161 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVA-------SPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKF 161 (248)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSS
T ss_pred CHHHCeEEEEEEEeCCccceeEEEEEEec-------CCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccC
Confidence 99999999999999888878888888875 5555444432 2345778889999998 8888 99999998644
Q ss_pred ecc------CceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee--eEEEEE
Q psy670 249 KES------SKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESNA--NLNLNI 301 (540)
Q Consensus 249 ~~~------~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~l~v 301 (540)
... ...........+ ...+.|.+.....+|.|.|+|.|.|..+.... .+.|.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 162 PHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp CSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 321 111111111222 23457888899999999999999998876444 444444
No 233
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.75 E-value=9.8e-18 Score=148.53 Aligned_cols=180 Identities=16% Similarity=0.247 Sum_probs=120.0
Q ss_pred eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC---EE--ee---------ccCceEEEEecCCCeEEEEEEEeCCC
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD---KL--VK---------ESSKIKIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~---~~--l~---------~~~~~~~~~~~~~~~~~~~l~i~~~~ 275 (540)
+...+....+.+|+.+.|.|.+.+.|.+.+.|++.. .. +. ...++.... ......|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~ 79 (213)
T 3r06_A 4 MTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG----SGRDSSFTISSLE 79 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred eEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec----cCCEEEEEECCCC
Confidence 444466778889999999999999888999999832 11 10 012222221 1122479999999
Q ss_pred CCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECCEEc
Q psy670 276 GPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEGKEL 352 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~ 352 (540)
.+|+|.|+|.+.+..+. ......+.|... ..+|.+...+.......|+.+.|.|.+.+.++ +.+.|+++|..+
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l 155 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRA----DAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEK 155 (213)
T ss_dssp GGGCSEEEEEECSSSSCEECCCEEEEECCC----CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred cccCEEEEEecccCCceEEcCCceEEEecc----CCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCccc
Confidence 99999999999987543 233445666221 22666655454444557888999999998654 389999999988
Q ss_pred cCCCceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 353 QQTDRISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 353 ~~~~~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
............ ++. ...+.|.|.....+|+|.|+|.|.|.....
T Consensus 156 ~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 156 RDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred CCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 653201111111 111 123478888888889999999999987543
No 234
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.75 E-value=9.7e-18 Score=152.39 Aligned_cols=185 Identities=14% Similarity=0.196 Sum_probs=115.2
Q ss_pred CCceeecCCCCeEEEEEEecccCCCe-----EEEEeCCEEeeccCce------EEEEecCC--------CeEEEEEEEeC
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPRPE-----VKWFKADKLVKESSKI------KIIVNEQD--------DTYEIICEITD 273 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~~~-----v~W~~~~~~l~~~~~~------~~~~~~~~--------~~~~~~l~i~~ 273 (540)
.+....+..|+++.|.|.+.+.|.+. +.|++++......... ........ ......|.|.+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 88 (248)
T 3pv7_A 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88 (248)
T ss_dssp TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence 34456677899999999998877665 9999964321100000 00000000 01123599999
Q ss_pred CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEE
Q psy670 274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKE 351 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~ 351 (540)
++.+|+|.|+|.+.+..+.....+.|.|.. +|.+...+. .....|+.+.|.|.+.+ .|.+ .|.|+++|..
T Consensus 89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~-------~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~ 160 (248)
T 3pv7_A 89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVA-------SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQK 160 (248)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred CCHHHCeEEEEEEEeCCccceeEEEEEEec-------CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence 999999999999999877777777777765 555554443 23446778889999998 7888 9999999975
Q ss_pred ccCCC-----ceEEEEE-ec-CC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee--eEEEEEEEE
Q psy670 352 LQQTD-----RISWNVT-LK-GD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE--LNANLTLNI 405 (540)
Q Consensus 352 ~~~~~-----~~~~~~~-~~-~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V 405 (540)
+.... ....... .. +. ...+.|.|.....+|.|.|+|.|.|..+. ...++.|.|
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 54221 0001111 11 21 12357889999999999999999999886 445555665
No 235
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.75 E-value=3.6e-17 Score=149.35 Aligned_cols=172 Identities=18% Similarity=0.306 Sum_probs=115.2
Q ss_pred ccccCCCeEEEEEEEeecC--CCceEEEeC--CEe---ec-------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 112 TIHQDGDLLVMECVLEASP--MPDIIWYQG--TKV---IE-------------DTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~---~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
..+.+|++++|.|.+.+.| .+.+.|+|+ +.. +. ...++.+.... .....+|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDT---SKNQVFLKMNSLQ 86 (257)
T ss_dssp SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEET---TTTEEEEEEESCC
T ss_pred ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEEC---CCCEEEEEECCCC
Confidence 4688999999999998875 678999985 221 10 12344333221 1223489999999
Q ss_pred CCCCeEEEEEEEcCCc-------ee--EEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEeccc
Q psy670 172 KDDGGNYRCNACNSIG-------ES--NANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~-------~~--~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 234 (540)
.+|+|.|+|.+.+..| .. ...+.|.|...+.. ...++.+...+....+.+|+.++|.|.+.+.
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 9999999999998753 11 23456777653210 0012234444666778899999999999998
Q ss_pred CCCeEEEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 235 PRPEVKWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 235 p~~~v~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
|.+.+.|++ ++..+.. ..++..... .....|.|.+++.+|+|.|+|.+.|..
T Consensus 167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS----GTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----BTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC----CCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 888999999 5543210 122222111 112479999999999999999999864
No 236
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.75 E-value=5.5e-17 Score=142.14 Aligned_cols=162 Identities=13% Similarity=0.198 Sum_probs=111.2
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG---- 187 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~---- 187 (540)
..+.+|++++|.|.+. .+.+.+.|+|+|..+....... . .........|.|.+++.+|+|.|+|.+.+...
T Consensus 17 ~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~--~--~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~ 91 (201)
T 1nkr_A 17 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG--E--HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQV 91 (201)
T ss_dssp SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC--E--EETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCC
T ss_pred CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeee--e--cCCCCceEEEEeccCCcccCeEEEEeEecCCCCccc
Confidence 4578999999999995 4777999999987653211100 0 00112234899999999999999999986431
Q ss_pred -eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 188 -ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 188 -~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
..+..+.|.|.... .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+......... ..+...
T Consensus 92 ~~~s~~~~l~V~~~~----~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~---~~~~~~ 162 (201)
T 1nkr_A 92 SAPSDPLDIVIIGLY----EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPK---VNGTFQ 162 (201)
T ss_dssp CCCCCCEEEEEECSS----CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEE---ETTEEE
T ss_pred cCCCCCEEEEeeccC----CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccc---cCCceE
Confidence 23455667776422 2456554444 35789999999999986 56789999999866432211111 112234
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcC
Q psy670 267 IICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
..|.|.+++ |+|.|+|.+.+.
T Consensus 163 ~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 163 ADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EEEEEEECC--SCEEEEEEEEET
T ss_pred EEEEeCCcC--CCeeEEEEEEcC
Confidence 579999998 999999999865
No 237
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.75 E-value=2.8e-17 Score=144.08 Aligned_cols=172 Identities=16% Similarity=0.308 Sum_probs=114.7
Q ss_pred CccccCCCeEEEEEEEe----ecCCCceEEEeCCEeecC------------CCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLE----ASPMPDIIWYQGTKVIED------------TGRIKMSKKSIGKDTYLLRLEINNPTKDD 174 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~----~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 174 (540)
++.+.+|++++|.|.+. +.|.+.+.|++++..+.. ..+..+. ... ..+|.|.+++.+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~---~~~---~~~L~I~~v~~~D 76 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD---ITN---NLSIVILALRPSD 76 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE---STT---TTEEEECSCCGGG
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc---cCC---CcEEEEecccchh
Confidence 35678999999999984 346678999999887621 1111111 011 1279999999999
Q ss_pred CeEEEEEEEcCCcee-----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEe
Q psy670 175 GGNYRCNACNSIGES-----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLV 248 (540)
Q Consensus 175 ~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l 248 (540)
+|.|+|.+.+..+.. ...+.|.|..... .|.+.. .....|+.+.|.|.+. ++|.+.|.|+++|..+
T Consensus 77 ~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~----~p~~~~----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l 148 (201)
T 1dr9_A 77 EGTYECVVLKYEKDAFKREHLAEVTLSVKADFP----TPSISD----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL 148 (201)
T ss_dssp CEEEEEEEEECCTTSCEEEEEEEEEEEEECCCC----CCEEEE----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEE
T ss_pred CeEEEEEEEcCCCCccccccccEEEEEEcCCCC----CCceEe----ccCCCCCeEEEEEecCCccCCCEEEEEECCEEC
Confidence 999999999976543 3566777764221 233321 2224589999999995 8999999999999888
Q ss_pred eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670 249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298 (540)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 298 (540)
..... ........+.+.. ..+..+...|.|.|+|.|.|..+..+..+.
T Consensus 149 ~~~~~-~~~~~~~~~~~~~-~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 149 NAINT-TVSQDPETELYAV-SSKLDFNMTTNHSFMCLIKYGHLRVNQTFN 196 (201)
T ss_dssp CCSEE-EEEECTTTCCEEE-EEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred ccccc-eEEecCCCcEEEE-EEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence 75432 2222222233222 122333457999999999999887766544
No 238
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.75 E-value=6.3e-17 Score=146.92 Aligned_cols=185 Identities=16% Similarity=0.325 Sum_probs=121.1
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee-----------------cCCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI-----------------EDTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.| .+.+.|+|++ ..+ ....++.+.... .....+|.|.+
T Consensus 11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~ 87 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDN---SKNTLYLQMNS 87 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeC---CCCEEEEEECc
Confidence 45788999999999998877 5789999842 111 012344443321 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCce--eEEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEecccCCCeE
Q psy670 170 PTKDDGGNYRCNACNSIGE--SNANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV 239 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 239 (540)
++.+|+|.|+|.+.+..+. ....+.|.|...+.. ...++.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus 88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v 167 (247)
T 2ghw_B 88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL 167 (247)
T ss_dssp CCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred CCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence 9999999999999987332 223456666643110 012344555566777889999999999999888899
Q ss_pred EEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEe
Q psy670 240 KWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIE 302 (540)
Q Consensus 240 ~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~ 302 (540)
.|++ ++..+.. ..++... . .....+|.|.+++.+|+|.|+|.+.+..... .....|.|.
T Consensus 168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGS--G--SGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEEECTTSCCEEEEETTTEECTTCCTTEEEE--C--SSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEECCCCCcEEEEEEeccCCCccCCCEEEe--c--CCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 9999 5543310 1122221 1 1123479999999999999999999854322 233455554
No 239
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.74 E-value=4.9e-17 Score=147.62 Aligned_cols=186 Identities=13% Similarity=0.272 Sum_probs=121.3
Q ss_pred ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
....+.+|++++|.|.+.+.| .+.+.|+++. ..+. ...++.+..... ....+|.|.+
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~ 87 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNS--KNTLYLQMNS 87 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETT--TTEEEEEECS
T ss_pred CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCC--CCEEEEEECc
Confidence 346788999999999999876 5789999842 1110 112333322211 1234799999
Q ss_pred CCCCCcEEEEEEEEcCCCC--eeeeEEEEEeeccC--------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeE
Q psy670 274 PIGPDSGTYRCNVKNEFGE--SNANLNLNIEAEAE--------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI 343 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~--~~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i 343 (540)
++.+|+|.|+|.+.+..+. ......|.|...+. ....++.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus 88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v 167 (247)
T 2ghw_B 88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL 167 (247)
T ss_dssp CCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred CCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence 9999999999999987322 22334566654211 0012445555666777889999999999999998999
Q ss_pred EEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEE
Q psy670 344 VWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIE 406 (540)
Q Consensus 344 ~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 406 (540)
.|++ ++..+. ...++.. ... ....+|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~--~~~--~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSG--SGS--GTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEEECTTSCCEEEEETTTEECTTCCTTEEE--ECS--SSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEECCCCCcEEEEEEeccCCCccCCCEEE--ecC--CCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 9999 554331 1122222 111 223479999999999999999999864322 233455554
No 240
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.74 E-value=1.1e-17 Score=147.94 Aligned_cols=174 Identities=14% Similarity=0.264 Sum_probs=114.1
Q ss_pred ccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec----------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 112 TIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE----------------DTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
..+.+|++++|.|.+.+.+ .+.+.|+|+ +.... ...++.+..... ...++|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~ 86 (210)
T 3d9a_H 10 SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTS---KNQYYLDLNSVT 86 (210)
T ss_dssp SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGG---GTEEEEEECSCC
T ss_pred EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCC---CCEEEEEECCCC
Confidence 4678999999999998765 478999985 22210 123444433211 123489999999
Q ss_pred CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEEee
Q psy670 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKLVK 249 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~l~ 249 (540)
.+|+|.|.|.+.+.. .......|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~ 162 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 162 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCC---CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCC---CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccc
Confidence 999999999998863 11223456665311 124555433333446789999999999985 887 999999987542
Q ss_pred ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 250 ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
........ ........+.|.|.++..+| |.|+|.|.|..+...
T Consensus 163 ~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 163 VHTFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp EEECCCEE-ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred eEEcCCcc-CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 11111111 11111233578999988877 999999999887654
No 241
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.74 E-value=8.1e-17 Score=146.75 Aligned_cols=181 Identities=17% Similarity=0.308 Sum_probs=121.6
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
|....+.+|++++|.|.+.+.| .+.+.|+++ +..+. ...++.+..... .....|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~ 84 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKP--SSTAYMQLS 84 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETT--TTEEEEEEC
T ss_pred CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecC--CCEEEEEEC
Confidence 4456788999999999998875 678999994 22210 012333322211 123479999
Q ss_pred CCCCCCcEEEEEEEEcCCCC-----eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-----e
Q psy670 273 DPIGPDSGTYRCNVKNEFGE-----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-----E 342 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-----~ 342 (540)
+++.+|+|.|.|.+.+..|. ....+.|.|.. ++.+...+....+.+|++++|.|.+.+.|.+ .
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~-------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~ 157 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS-------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY 157 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC-------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeecc-------cccEEecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence 99999999999999998652 12334555543 4556666777788999999999999988765 8
Q ss_pred EEEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEEE
Q psy670 343 IVWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEM 407 (540)
Q Consensus 343 i~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~ 407 (540)
+.|++ +|..+. ...++... ..+. ..+|.|.+++.+|+|.|+|.|.|.... ...-..|.|..
T Consensus 158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGS--GSGT--DFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp EEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEE--ccCC--EEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 99999 554331 01233221 1121 337999999999999999999985432 22334455543
No 242
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.74 E-value=2.4e-17 Score=148.66 Aligned_cols=184 Identities=13% Similarity=0.219 Sum_probs=121.9
Q ss_pred eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EE---ee---------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KL---VK---------ESSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---l~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
.+...+....+.+|+++.|.|.+.+.+.+.+.|++.. .. +. ...++..... .....|.|.++
T Consensus 26 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v 101 (237)
T 3sob_L 26 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS----GTDFTLTISSL 101 (237)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSC
T ss_pred eEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcC----CCEEEEEECCC
Confidence 3444566678889999999999999888899999842 11 10 0122222211 12347999999
Q ss_pred CCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cC-CCeEEEEECCEE
Q psy670 275 IGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KP-MPEIVWFHEGKE 351 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p-~~~i~W~~~~~~ 351 (540)
+.+|+|.|+|.+.+..+. ......+.|... ..+|.+...+.......|+.++|.|.+.+ .| .+.+.|+++|..
T Consensus 102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~ 177 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRT----VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 177 (237)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEECC----CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred ChhhCeEEEEeeccCCceEEcCcEEEEEecC----CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCC
Confidence 999999999999886653 233345565441 12555554333333446889999999998 45 589999999998
Q ss_pred ccCCCceEEEEE--ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 352 LQQTDRISWNVT--LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 352 ~~~~~~~~~~~~--~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
+........... .++. ...+.|.|.....+|+|.|+|.|.|.......+
T Consensus 178 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 229 (237)
T 3sob_L 178 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT 229 (237)
T ss_dssp CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred CCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence 875320111111 1111 123478999999999999999999987654433
No 243
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.74 E-value=1.9e-17 Score=147.03 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=114.2
Q ss_pred CccccCCCeEEEEEEEee-cC-CCceEEEeCC--Eeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEA-SP-MPDIIWYQGT--KVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p-~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 174 (540)
...+.+|++++|.|.+.+ .+ .+.+.|+|++ ..+. ...++.... ....++|.|.+++.+|
T Consensus 9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D 83 (216)
T 2xzc_L 9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-----SGTSATLGITGLQTGD 83 (216)
T ss_dssp EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEECSCCGGG
T ss_pred cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-----cCCEEEEEECCCCccc
Confidence 356889999999999533 32 5789999943 2110 112333321 1123489999999999
Q ss_pred CeEEEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeec
Q psy670 175 GGNYRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKE 250 (540)
Q Consensus 175 ~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~ 250 (540)
+|.|+|.+.+..+ .......|.|.... .+|.+...+.......|+.++|.|.+.+ .|.+ .|.|+++|..+..
T Consensus 84 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~ 159 (216)
T 2xzc_L 84 EADYYCGTWDSSLNPVFGGGTKLEIKRTV----AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG 159 (216)
T ss_dssp CEEEEEEEECTTSCEEEBCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred CEEEEEEEEeCCCcceECCCEEEEEcCCC----CCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence 9999999999875 22234456664321 2555544222222235889999999988 5654 8999999998765
Q ss_pred cCceEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 251 SSKIKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 251 ~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
...... ......+ ...+.|.|..+..+|+|.|+|.|.|......
T Consensus 160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 160 NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred CeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 411111 1111222 2345799999999999999999999765433
No 244
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.74 E-value=9.7e-18 Score=151.29 Aligned_cols=175 Identities=17% Similarity=0.217 Sum_probs=117.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---e---------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---I---------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.+.+.+.|+|++ .. + ....++.... .....+|.|.+++.+|+|
T Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 107 (237)
T 3sob_L 33 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-----SGTDFTLTISSLQPEDFA 107 (237)
T ss_dssp EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred eEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc-----CCCEEEEEECCCChhhCe
Confidence 356889999999999988888899999832 11 0 1123333321 112348999999999999
Q ss_pred EEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CCeEEEEeCCEEeeccC-
Q psy670 177 NYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RPEVKWFKADKLVKESS- 252 (540)
Q Consensus 177 ~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~l~~~~- 252 (540)
.|+|.+.+..+. ......+.|... ..+|.+...+......+|+.++|.|.+.+ .| .+.+.|+++|..+....
T Consensus 108 ~Y~C~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~ 183 (237)
T 3sob_L 108 TYYCQQSYTTPPTFGQGTKVEIKRT----VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ 183 (237)
T ss_dssp EEEEEECSSSSCEECCCEEEEEECC----CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred EEEEeeccCCceEEcCcEEEEEecC----CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence 999999887643 233345555431 12565554444333445889999999988 55 58999999999886532
Q ss_pred ceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 253 KIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 253 ~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
..........+ ...+.|.|.....+|+|.|+|.|.|......
T Consensus 184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 227 (237)
T 3sob_L 184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 227 (237)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence 11111111222 2345788999999999999999999865443
No 245
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.73 E-value=7.2e-17 Score=145.62 Aligned_cols=178 Identities=12% Similarity=0.250 Sum_probs=114.0
Q ss_pred ccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEee---------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVK---------------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~---------------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
...+..+.+.+|++++|.|. .+.|.+.+.|+++ +..+. ...++.+.. .......|.|.+
T Consensus 4 ~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~ 79 (238)
T 2p1y_A 4 TQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR---PSQENFSLILEL 79 (238)
T ss_dssp EEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC---CSSSBCEEEESS
T ss_pred eECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc---cCCceEEEEEec
Confidence 33456677889999999999 6788899999995 21110 011222221 011123799999
Q ss_pred CCCCCcEEEEEEEEcCCCCe-----eeeEEEEEeeccCCC-----CCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeE
Q psy670 274 PIGPDSGTYRCNVKNEFGES-----NANLNLNIEAEAEPE-----GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI 343 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~-----~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i 343 (540)
++.+|+|.|+|.+.+..+.. .....+.|...+... ...+.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus 80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i 159 (238)
T 2p1y_A 80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYF 159 (238)
T ss_dssp CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEE
T ss_pred CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcE
Confidence 99999999999999875421 123455555421000 00014455566777899999999999999999999
Q ss_pred EEEECCE--E---cc---------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 344 VWFHEGK--E---LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 344 ~W~~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
.|++++. . +. ...++.... +......+|.|.+++.+|+|.|+|.|.|..
T Consensus 160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFF--NKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEECTTSCCEEEEEEETTCSEEEETTEEEEE--ETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEEccCCCcccCCceEEEe--cCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9999641 1 10 112222211 111223489999999999999999999973
No 246
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.73 E-value=3.5e-17 Score=149.45 Aligned_cols=173 Identities=18% Similarity=0.263 Sum_probs=113.9
Q ss_pred eeecCCCCeEEEEEEecccC--CCeEEEEeC--CEE---ee-------------ccCceEEEEecCCCeEEEEEEEeCCC
Q psy670 216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKL---VK-------------ESSKIKIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~---l~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~ 275 (540)
...+.+|++++|.|.+.+.| .+.+.|+++ +.. +. ...++.+.... ......|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDT--SKNQVFLKMNSLQ 86 (257)
T ss_dssp CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEET--TTTEEEEEEESCC
T ss_pred CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEEC--CCCEEEEEECCCC
Confidence 34678899999999999875 678999985 221 10 01233332221 1123479999999
Q ss_pred CCCcEEEEEEEEcCCC-------C--eeeeEEEEEeeccCC--------CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc
Q psy670 276 GPDSGTYRCNVKNEFG-------E--SNANLNLNIEAEAEP--------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK 338 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~-------~--~~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~ 338 (540)
.+|+|.|+|.+.+..| . ......|.|...+.. ...++.+...+....+.+|+.++|.|.+.+.
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 9999999999999754 1 113345666543200 0011223334556668899999999999998
Q ss_pred CCCeEEEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 339 PMPEIVWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 339 p~~~i~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
|.+.+.|++ +|..+. ...++... ..+ ...+|.|.+++.+|+|.|+|.|.|..
T Consensus 167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS--GSG--TDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EEB--TEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEe--cCC--CEEEEEECCCChhhCEEEEEEEeCCC
Confidence 888999999 554331 01233322 111 13389999999999999999999975
No 247
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.73 E-value=1.3e-16 Score=145.40 Aligned_cols=178 Identities=13% Similarity=0.238 Sum_probs=120.2
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.| .+.+.|+|+ +..+. ...++.+.... .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~ 85 (256)
T 1nqb_A 9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDK---PSSTAYMQLSS 85 (256)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEec---CCCEEEEEECc
Confidence 45788999999999998775 578999994 22210 12344433221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCce-----eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCC-----eE
Q psy670 170 PTKDDGGNYRCNACNSIGE-----SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP-----EV 239 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~v 239 (540)
++.+|+|.|.|.+.+..+. ....+.|.|.. ++.+...+....+.+|++++|.|.+.+.|.+ .+
T Consensus 86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~-------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v 158 (256)
T 1nqb_A 86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS-------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYL 158 (256)
T ss_dssp CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC-------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCE
T ss_pred CChhhCEEEEEEEeeccCccceeEEcCceeeeecc-------cccEEecCcEEEEecCCcEEEEeEecCcccccccceEE
Confidence 9999999999999987552 22345666663 4555556777788999999999999987765 89
Q ss_pred EEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEe
Q psy670 240 KWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIE 302 (540)
Q Consensus 240 ~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~ 302 (540)
.|++ ++..+.. ..++..... .....|.|.+++.+|+|.|+|.+.+.... ......|.|.
T Consensus 159 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 159 EWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS----GTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp EEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEECCCCCcEEEEEEeCCCCCccCCcEEEEcc----CCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 9999 5543310 112222111 11247999999999999999999875332 1223445554
No 248
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.73 E-value=3.7e-17 Score=144.89 Aligned_cols=169 Identities=15% Similarity=0.249 Sum_probs=111.7
Q ss_pred CccccCCCeEEEEEEEeec-------CCCceEEEeCCEeec-----------------CCCceEEEEeecCcceEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEAS-------PMPDIIWYQGTKVIE-----------------DTGRIKMSKKSIGKDTYLLRLE 166 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~-------p~~~v~W~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~ 166 (540)
...+.+|++++|.|.+.+. +.+.+.|+|++.... ...++.+..+. .....+|.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~ 85 (214)
T 2zg1_A 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDV---QKKNCSLS 85 (214)
T ss_dssp EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCG---GGTBCCEE
T ss_pred EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccC---CCCeEEEE
Confidence 4567899999999999643 466899999865210 11233322211 11123799
Q ss_pred EcCCCCCCCeEEEEEEEcCCcee----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc----CCCe
Q psy670 167 INNPTKDDGGNYRCNACNSIGES----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK----PRPE 238 (540)
Q Consensus 167 i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~ 238 (540)
|.+++.+|+|.|.|.+.+..+.. ...+.|.|...+. .|.+.. +. .+.+|+.++|.|.+.+. |.+.
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~ 158 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE----KPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLT 158 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC----CCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCE
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCC----CCceec-Cc--cccCCCeEEEEEEeccCCCCCCCce
Confidence 99999999999999999876332 1467777775322 444433 21 26689999999999763 7889
Q ss_pred EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670 239 VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299 (540)
Q Consensus 239 v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 299 (540)
+.|++++..+.... ......|.|..+..+|+|.|+|.|.|..+.......+
T Consensus 159 v~W~~~~~~~~~~~----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v 209 (214)
T 2zg1_A 159 FSWTGNALSPLDPE----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209 (214)
T ss_dssp EEEESSTTSSSCSS----------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred EEEeCCCCccCCCC----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence 99999986532211 0112378999999999999999999976544333333
No 249
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.73 E-value=2.7e-17 Score=151.43 Aligned_cols=209 Identities=17% Similarity=0.245 Sum_probs=114.8
Q ss_pred CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEe
Q psy670 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLV 248 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l 248 (540)
++.|.+.|.|.+.+..|.......+ .+...+..+.+.+|++++|.|.+.+ +.+.+.|++. +...
T Consensus 4 ~~~~~~~y~~~~~~~~g~~~~~~~~-------------~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~ 69 (270)
T 3qib_D 4 ERADLIAYLKQATKGGGGSGGGGGM-------------KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEF 69 (270)
T ss_dssp ------------------------C-------------CCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCE
T ss_pred hhhhHHHHHHHHhccCCccccccce-------------eEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCc
Confidence 5678999999998876654333222 2334455677889999999999865 6778999982 2111
Q ss_pred ---ec-cC------------ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC----CeeeeEEEEEeeccCCC
Q psy670 249 ---KE-SS------------KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG----ESNANLNLNIEAEAEPE 308 (540)
Q Consensus 249 ---~~-~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~l~v~~~~~~~ 308 (540)
.. .. ++.... .......|.|.+++.+|+|.|.|.+.+... .......+.|......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~- 145 (270)
T 3qib_D 70 KFLINFQNQEVLQQIDMTEKRFSAEC---PSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKN- 145 (270)
T ss_dssp EEEEEEETTEEEEECHHHHHHEEEEC---CTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTT-
T ss_pred EEEEEECCCCceecCCccCCcEEEEe---CCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccc-
Confidence 00 00 222211 112235899999999999999999996432 2223345666542211
Q ss_pred CCCCeEE-eCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCCceEE----EEE--ecCCe-eEEEEEEcCC
Q psy670 309 GDPPTFI-EKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTDRISW----NVT--LKGDK-YHIRLEVKDP 378 (540)
Q Consensus 309 ~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~~~~~----~~~--~~~~~-~~~~L~i~~~ 378 (540)
..+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+........ ... .++.. ..+.|.|...
T Consensus 146 ~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~ 225 (270)
T 3qib_D 146 VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSAT 225 (270)
T ss_dssp CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHH
T ss_pred ccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHH
Confidence 1134433 2233333456999999999998 6666 8999999998865322100 000 11211 2246888888
Q ss_pred CCCC-CeeEEEEEEcCCeee
Q psy670 379 RKED-TGLYKCNIKNFHGEL 397 (540)
Q Consensus 379 ~~~d-~G~Y~C~a~n~~g~~ 397 (540)
..+| .|.|+|.|.|.....
T Consensus 226 ~~~d~~g~YtC~v~~~~l~~ 245 (270)
T 3qib_D 226 FWQNPRNHFRCQVQFYGLSE 245 (270)
T ss_dssp HHHSTTCEEEEEEEECCBCT
T ss_pred HhccCCCeEEEEEEecCCCC
Confidence 7777 999999999976543
No 250
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.73 E-value=1.3e-18 Score=154.02 Aligned_cols=178 Identities=13% Similarity=0.201 Sum_probs=118.0
Q ss_pred CceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCc
Q psy670 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDS 279 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 279 (540)
+....+.+|+.++|.|.+.+.|.+.+.|+++ +..+.. ..++..... .....|.|.+++.+|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~ 81 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS----GTTATLTISGAQPEDE 81 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE----TTEEEEEETTCCGGGC
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEee----CCEEEEEECcCCcccC
Confidence 5667788999999999998887778999984 322210 122222221 1124799999999999
Q ss_pred EEEEEEEEcCCC-Ce--eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccC
Q psy670 280 GTYRCNVKNEFG-ES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQ 354 (540)
Q Consensus 280 g~y~C~~~~~~~-~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~ 354 (540)
|.|+|.+.+..+ .. .....+.|...+ ..+|.+...+....+.+|+.++|.|.+.+. |. +.+.|+++|..+..
T Consensus 82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~---~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~ 158 (212)
T 1nfd_E 82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGP---KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND 158 (212)
T ss_dssp SEEEEEEEETTTTEEEECCCEEEEEECCC---CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred EEEEEEEEcccCcccccCCceEEEEccCC---CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence 999999997322 11 223445554321 125666554433334579999999999987 54 79999999998865
Q ss_pred CCceEEEEE-ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 355 TDRISWNVT-LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
......... .++....+.|.|.++..+|+|.|+|.|.|..+...
T Consensus 159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (212)
T 1nfd_E 159 GVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE 203 (212)
T ss_dssp SCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred CeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence 432110000 11111234699999999999999999999876543
No 251
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.73 E-value=1.9e-17 Score=146.28 Aligned_cols=178 Identities=13% Similarity=0.194 Sum_probs=115.1
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee----------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK----------------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~----------------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
+....+.+|++++|.|.+.+.+ .+.+.|+++ +..+. ...++.+..... .....|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~ 84 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTS--KNQYYLDLNS 84 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGG--GTEEEEEECS
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCC--CCEEEEEECC
Confidence 3345678899999999998865 478999985 22211 012333322211 1234799999
Q ss_pred CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECCEE
Q psy670 274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEGKE 351 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~ 351 (540)
++.+|+|.|.|.+.+.. .......+.|.... ..+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..
T Consensus 85 v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 160 (210)
T 3d9a_H 85 VTTEDTATYYCANWDGD-YWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 160 (210)
T ss_dssp CCGGGCEEEEEEETTSS-CBCCCEEEEECCCC---CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred CCcccCEEEEEEEecCc-ccccceEEEeccCC---CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence 99999999999999863 22233456665321 124555433322335689999999999986 888 9999999876
Q ss_pred ccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 352 LQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
+........ ..++. ...+.|.|..+..+| |.|+|.|.|..|.....
T Consensus 161 ~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 161 SGVHTFPAV--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp TTEEECCCE--EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred cceEEcCCc--cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence 432111111 11111 123479999888866 99999999998876543
No 252
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.73 E-value=3.4e-17 Score=145.41 Aligned_cols=177 Identities=14% Similarity=0.188 Sum_probs=115.3
Q ss_pred CceeecCCCCeEEEEEEe-cccC-CCeEEEEeCC--EEee----------c--cCceEEEEecCCCeEEEEEEEeCCCCC
Q psy670 214 PRIIPNESGTLIQMKCKC-SAKP-RPEVKWFKAD--KLVK----------E--SSKIKIIVNEQDDTYEIICEITDPIGP 277 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~-~~~p-~~~v~W~~~~--~~l~----------~--~~~~~~~~~~~~~~~~~~l~i~~~~~~ 277 (540)
|....+.+|++++|.|.+ .+.+ .+.+.|++++ ..+. . ..++..... .....|.|.+++.+
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~ 82 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKS----GTSATLGITGLQTG 82 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE----TTEEEEEECSCCGG
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEecc----CCEEEEEECCCCcc
Confidence 566778899999999995 4443 5789999943 2110 0 112222211 11247999999999
Q ss_pred CcEEEEEEEEcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEcc
Q psy670 278 DSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQ 353 (540)
Q Consensus 278 d~g~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~ 353 (540)
|+|.|.|.+.+..+ .......+.|... ..+|.+...+.......|+.++|.|.+.+ .|.+ .|.|+++|..+.
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~----~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~ 158 (216)
T 2xzc_L 83 DEADYYCGTWDSSLNPVFGGGTKLEIKRT----VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS 158 (216)
T ss_dssp GCEEEEEEEECTTSCEEEBCCEEEEECCC----CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred cCEEEEEEEEeCCCcceECCCEEEEEcCC----CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence 99999999999876 2223345666431 12555554322222335889999999998 5554 899999999886
Q ss_pred CCCceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 354 QTDRISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 354 ~~~~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
........... ++. ...+.|.|..+..+|+|.|+|.|.|......
T Consensus 159 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 159 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 54111111111 111 2244799999999999999999999875543
No 253
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.73 E-value=5.8e-17 Score=145.75 Aligned_cols=171 Identities=11% Similarity=0.055 Sum_probs=118.6
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--eE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SN 190 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~ 190 (540)
.+.+|++++|.|.+.+ +...+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.+..+. .+
T Consensus 17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~------~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S 89 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS 89 (242)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC------SSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCC
T ss_pred ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc------cccCCcceeEEEecCCCcccCeEEEEEEecCCccccCC
Confidence 6789999999999853 4568999999987642100 0001112338999999999999999999876443 24
Q ss_pred EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+.|.|.+.. ..|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+... ... ......|.
T Consensus 90 ~~~~L~V~~~~----~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~----~~~----~~~~~~l~ 155 (242)
T 1p6f_A 90 NLLDLVVTEMY----DTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ----RGY----GKVQAEFP 155 (242)
T ss_dssp CCEEEEEECCS----CCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE----EEE----CSSEEEEE
T ss_pred cceEEEeeccc----CCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc----ccC----CCceEEEE
Confidence 55677776422 145554444 3456789999999999764 4589999998765431 111 11234799
Q ss_pred EeCCCCCCcEEEEEEEEcCC---CCeeeeEEEEEeec
Q psy670 271 ITDPIGPDSGTYRCNVKNEF---GESNANLNLNIEAE 304 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~ 304 (540)
|.+++.+|+|.|+|.+.+.. ...+..+.|.|...
T Consensus 156 I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 156 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred eCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 99999999999999999864 23456677777753
No 254
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.73 E-value=1.4e-16 Score=147.10 Aligned_cols=181 Identities=18% Similarity=0.260 Sum_probs=118.4
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE-----Eeec---------cCceEEEEecCCCeEEEEEEEe
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK-----LVKE---------SSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-----~l~~---------~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
.+.+...+..+.+.+|++++|.|.+.+.|.+.+.|++++. .+.. ..++..... .....|.|.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~ 87 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS----GTDFTLTIS 87 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEES
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc----CCeEEEEEc
Confidence 3445556777889999999999999998888999998542 1111 122222211 112379999
Q ss_pred CCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCC-------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccC--CCe
Q psy670 273 DPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEP-------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP--MPE 342 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~ 342 (540)
+++.+|+|.|.|.+.+..+. ......|.|...+.. ...++..+..+....+.+|+.++|.|.+.+.+ .+.
T Consensus 88 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~ 167 (276)
T 3auv_A 88 SLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYW 167 (276)
T ss_dssp SCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred cCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCE
Confidence 99999999999999987543 233345665543210 00122334445567788999999999999876 589
Q ss_pred EEEEECC--EEc-----------------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 343 IVWFHEG--KEL-----------------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 343 i~W~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
+.|++++ ... ....++... .++.....+|.|.+++.+|+|.|+|.|.|.
T Consensus 168 v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 168 IHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTIS--ADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEE--EEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEE--ecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 9999963 111 011233322 221222348999999999999999999997
No 255
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.73 E-value=2e-16 Score=136.42 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=113.3
Q ss_pred ccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 112 TIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
+.+..|++++|.|.+ +.|.+ .|.|++.+..+ .+.... .....|.|.+++.+|+|.|.|.+.+..+..
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 85 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSD-------TGRSVLTVRNASLSAAGTRVCVGSCGGRTF 85 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEE-------SSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEec-------CCccEEEECccCcccCceEEEEEEeCCCce
Confidence 578899999999999 88888 99999854333 122111 112389999999999999999999998888
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC----CeEEEEeCCEEeeccCceE--EEE----
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR----PEVKWFKADKLVKESSKIK--IIV---- 258 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~----~~v~W~~~~~~l~~~~~~~--~~~---- 258 (540)
...+.|.|+. +|........ ....|+.+ |.|.+.+ +|. +++.|++++..+....... ...
T Consensus 86 ~~~~~ltV~~-------~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~ 156 (210)
T 1gsm_A 86 QHTVQLLVYA-------FPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE 156 (210)
T ss_dssp EEEEEEEEEB-------CCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred EEEEEEEEEe-------cCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence 8899999986 4433221111 56678888 9999988 574 4899999999985432111 100
Q ss_pred ----ecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 259 ----NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 259 ----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
........+++.+.....++.+.|+|.|.+..-
T Consensus 157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~ 193 (210)
T 1gsm_A 157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP 193 (210)
T ss_dssp CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence 011223345666767777777899999998643
No 256
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.8e-16 Score=144.70 Aligned_cols=183 Identities=15% Similarity=0.298 Sum_probs=121.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecc--cCCCeEEEEeCC--EEee---c--------------cCceEEEEecCCCeE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--KLVK---E--------------SSKIKIIVNEQDDTY 265 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~l~---~--------------~~~~~~~~~~~~~~~ 265 (540)
++.+...+..+.+.+|++++|.|.+.+ .+.+.+.|++.. ..+. . ..++.+..... ..
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~ 83 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTS--AN 83 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETT--TT
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecC--CC
Confidence 455666777888999999999999987 367789999732 1110 0 11233322221 12
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcC------------CCCeeeeEEEEEeeccCCC--------CCCCeEEeCCceEEeeC
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNE------------FGESNANLNLNIEAEAEPE--------GDPPTFIEKPKIRSEQG 325 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~------------~~~~~~~~~l~v~~~~~~~--------~~~p~~~~~~~~~~~~~ 325 (540)
...|.|.+++.+|+|.|.|.+.+. .+.......|.|...+... ..++.+...+....+.+
T Consensus 84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (256)
T 3juy_B 84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP 163 (256)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence 347999999999999999999986 2223344556665432110 11455666777888999
Q ss_pred CCeEEEEEEEEccCC-CeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 326 GKLVVMECKVKAKPM-PEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 326 g~~v~l~C~~~~~p~-~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
|++++|.|.+.+.+. +.+.|++. +..+. ...++... .++. ..+|.|.+++.+|+|.|.|.|
T Consensus 164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~~ 239 (256)
T 3juy_B 164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGS--GSGT--DFTLTITRVEPEDFALYYCQV 239 (256)
T ss_dssp TSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCSEEEEEE
T ss_pred CCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEE--ccCC--EEEEEECCCCHhHCEEEEEEE
Confidence 999999999998776 89999983 22211 12233322 2222 237999999999999999999
Q ss_pred EcCCe
Q psy670 391 KNFHG 395 (540)
Q Consensus 391 ~n~~g 395 (540)
.|...
T Consensus 240 ~~~~~ 244 (256)
T 3juy_B 240 YGASS 244 (256)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 98543
No 257
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.73 E-value=1.5e-17 Score=151.03 Aligned_cols=184 Identities=15% Similarity=0.227 Sum_probs=119.4
Q ss_pred ccCCceeecCCCCeEEEEEEecccCCCeEEEEe----------------CCEEeecc---CceEEEEecCCCeEEEEEEE
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK----------------ADKLVKES---SKIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----------------~~~~l~~~---~~~~~~~~~~~~~~~~~l~i 271 (540)
...+..+.+.+|+.+.|.|.+.+.+.+.+.|++ ++...... .++.+.... .....|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I 81 (246)
T 4dzb_B 5 SQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS---LTLSTLTV 81 (246)
T ss_dssp EEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE---TTEEEEEE
T ss_pred EECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC---CCEEEEEE
Confidence 344566778899999999999998899999998 22222111 233332211 12347999
Q ss_pred eCCCCCCcEEEEEEEEcCCC----CeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEccCCC--eEE
Q psy670 272 TDPIGPDSGTYRCNVKNEFG----ESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKAKPMP--EIV 344 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~--~i~ 344 (540)
.+++.+|+|.|.|.+.+..+ .......+.|...... ..+|.+. ..+....+.+|+.++|.|.+.+.|++ .+.
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~ 160 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 160 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCc-ccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEE
Confidence 99999999999999987543 1223445666541111 1144443 33444445569999999999987654 899
Q ss_pred EEECCEEccCCCceEEEEE------ecCCe-eEEEEEEcCCCCCC-CeeEEEEEEcCCeeeE
Q psy670 345 WFHEGKELQQTDRISWNVT------LKGDK-YHIRLEVKDPRKED-TGLYKCNIKNFHGELN 398 (540)
Q Consensus 345 W~~~~~~~~~~~~~~~~~~------~~~~~-~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 398 (540)
|+++|..+........... .++.. ..+.|.|.....+| .|.|+|.|.|......
T Consensus 161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 9999998865322110000 01211 12468888888888 9999999999865443
No 258
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.72 E-value=1e-16 Score=144.89 Aligned_cols=176 Identities=15% Similarity=0.248 Sum_probs=117.6
Q ss_pred eccCCceeecCCCCeEEEEEEecccC----CCeEEEEeCC--EE---eec---------cCceEEEEecCCCeEEEEEEE
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAKP----RPEVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~~l~i 271 (540)
+...+....+.+|+.++|.|.+.+.| .+.+.|+++. .. +.. ..++..... ....+|.|
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I 79 (240)
T 1moe_A 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS----RTDFTLII 79 (240)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEE
T ss_pred eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEec----CCeEEEEE
Confidence 34456677888999999999999887 7789999952 21 110 112222111 11237999
Q ss_pred eCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEEC
Q psy670 272 TDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE 348 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~ 348 (540)
.+++.+|+|.|+|.+.+..+. ......|.|...+.. ..++.+...+....+.+|+.++|.|.+.+.|. +.+.|+++
T Consensus 80 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~-~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~ 158 (240)
T 1moe_A 80 DPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSG-GGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ 158 (240)
T ss_dssp SSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCC-CCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred cCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCC-CCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence 999999999999999987654 334456666553211 11333444566677889999999999999874 58999995
Q ss_pred --CEEcc-----------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670 349 --GKELQ-----------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392 (540)
Q Consensus 349 --~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 392 (540)
+..+. ...++.. ..+......+|.|.+++.+|+|.|+|.|.+
T Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 159 RPEQGLEWIGRIDPANGNSKYVPKFQGKATI--TADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp CTTSCCEEEEEEETTTTEEEECGGGTTTEEE--EEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCCCCcEEEEEEcccCCccccCccccccEEE--EEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 22210 1122222 222222334899999999999999999985
No 259
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.72 E-value=6.3e-18 Score=150.11 Aligned_cols=175 Identities=14% Similarity=0.173 Sum_probs=110.9
Q ss_pred ccCCCeEEEEEEEeec---CC-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 114 HQDGDLLVMECVLEAS---PM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~---p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
+.+|++++|.|.+.+. |. +.|.|+|++..+.............+.....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 7899999999999877 33 6899999998775432111111111112234589999999999999999999986643
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDT--Y 265 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~--~ 265 (540)
.....+... .....+|.+...+.......|+.+.|.|.+.| +|.+ .|.|+++|..+.......... ..++. .
T Consensus 103 ~~~~~v~~~---~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~-~~~gt~~~ 178 (218)
T 2rgs_A 103 PIERTISKI---KGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVL-DSDGSYFI 178 (218)
T ss_dssp CEEEEECCC---CCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEE-CTTSCEEE
T ss_pred cceEEEeec---CCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEE-CCCCCEEE
Confidence 111122110 01113565543333222235999999999998 6765 899999999874322111111 12222 2
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.+.|.+.....+|.|.|+|.|.|....
T Consensus 179 ~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 179 YSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp EEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred EEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 335666665555789999999997654
No 260
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.72 E-value=1.1e-16 Score=145.62 Aligned_cols=179 Identities=15% Similarity=0.266 Sum_probs=115.6
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE-----Eee---------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK-----LVK---------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-----~l~---------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
..+...+..+.+.+|+.++|.|.+.+.|.+.+.|++... .+. ...++..... .....|.|.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~ 80 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS----GTDYSLTISN 80 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESS
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC----CCEEEEEEcc
Confidence 344556677888899999999999999989999998531 110 0122221111 1123799999
Q ss_pred CCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCC------------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-
Q psy670 274 PIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEP------------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP- 339 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~------------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p- 339 (540)
++.+|+|.|.|.+.+..+.. .....+.|...+.. ...++.++..+....+.+|+.++|.|.+.+.+
T Consensus 81 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~ 160 (250)
T 3esu_F 81 LEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAF 160 (250)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTG
T ss_pred CChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcc
Confidence 99999999999999865542 23345555442100 00122333345556788999999999998876
Q ss_pred -CCeEEEEEC--CEEccC-----------------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670 340 -MPEIVWFHE--GKELQQ-----------------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392 (540)
Q Consensus 340 -~~~i~W~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 392 (540)
.+.+.|+++ +..+.. ..++... .++.....+|.|.+++.+|+|.|+|.|.+
T Consensus 161 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 161 SSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLT--ADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp GGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEE--EEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEE--ecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 789999997 432211 1223222 22222344799999999999999999997
No 261
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.72 E-value=5.3e-18 Score=148.63 Aligned_cols=162 Identities=20% Similarity=0.341 Sum_probs=105.6
Q ss_pred cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 192 (540)
.+.+|++++|.|.+ |.+.|.|+|+|..+..... .. .+|.|.+++.+|+|.|+|.+.+.. . ..
T Consensus 14 ~~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~---------~~---~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~ 75 (204)
T 1sy6_A 14 DYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTE---------DK---KKWNLGSNAKDPRGMYQCKGSQNK-S--KP 75 (204)
T ss_dssp CCCSSSEEEEEECS---CSSEEEEEETTEEEEEEES---------SC---CCEEEEEGGGCCEEEEEEESSSSC-C--CC
T ss_pred eecCCCeEEEEEcC---CCCEEEEEECCEECCCCCC---------CC---CeEEeCCCCcCCCEEEEEEecCCC-C--ee
Confidence 35689999999998 7789999999988753200 01 179999999999999999965432 2 22
Q ss_pred EEEEEecC------c------------------CCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEe
Q psy670 193 IALNFQGG------E------------------NGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLV 248 (540)
Q Consensus 193 ~~l~v~~~------~------------------~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l 248 (540)
+.|.+... . .....++.+...+.. ...+|+.++|.|. +.|.+.+.|++++..+
T Consensus 76 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l 152 (204)
T 1sy6_A 76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK-VSISGTTVILTCP--QYPGSEILWQHNDKNI 152 (204)
T ss_dssp EEEEEEC------------------------------------CCCCE-EEEETTEEEEECS--CCCSSCEEEEETTEEE
T ss_pred EEEEEEEeccccccccccccccccccccccccccccccccceecCCce-eeecCCcEEEEcC--CCCCCceEEEECCEEC
Confidence 34444300 0 000001222222222 2227999999998 7888899999999987
Q ss_pred eccCc-eEEEEecCCCeEEEEEEEeCC-CCCCcEEEEEEEEcCCCCe-eeeEEEEE
Q psy670 249 KESSK-IKIIVNEQDDTYEIICEITDP-IGPDSGTYRCNVKNEFGES-NANLNLNI 301 (540)
Q Consensus 249 ~~~~~-~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~-~~~~~l~v 301 (540)
..... ..+... ...|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 153 ~~~~~~~~~~~~------~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 153 GGDEDDKNIGSD------EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp SCCTTCTTEEEE------TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CCccCCceEecC------CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 54321 111111 127999999 9999999999999998853 34444443
No 262
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.72 E-value=2.2e-17 Score=146.40 Aligned_cols=174 Identities=16% Similarity=0.295 Sum_probs=113.3
Q ss_pred CCceeecCCCCeEEEEEEeccc-------CCCeEEEEeCCEEe------ec-----------cCceEEEEecCCCeEEEE
Q psy670 213 KPRIIPNESGTLIQMKCKCSAK-------PRPEVKWFKADKLV------KE-----------SSKIKIIVNEQDDTYEII 268 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~-------p~~~v~W~~~~~~l------~~-----------~~~~~~~~~~~~~~~~~~ 268 (540)
.+..+.+.+|+.+.|.|.+.+. +.+.+.|++++... .. ..++.+ .........+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~s 83 (214)
T 2zg1_A 6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL--LGDVQKKNCS 83 (214)
T ss_dssp CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEE--CSCGGGTBCC
T ss_pred CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEE--eccCCCCeEE
Confidence 3556778899999999998753 46789999986521 10 012211 1111111236
Q ss_pred EEEeCCCCCCcEEEEEEEEcCCCCe----eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc----CC
Q psy670 269 CEITDPIGPDSGTYRCNVKNEFGES----NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK----PM 340 (540)
Q Consensus 269 l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~----p~ 340 (540)
|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|...+. +|.+.. +. .+.+|+.++|.|.+.+. |.
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~ 156 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE----KPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPP 156 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC----CCEEC---C--CCCTTCCEEEEEECTTCCSCSSC
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCC----CCceec-Cc--cccCCCeEEEEEEeccCCCCCCC
Confidence 9999999999999999999875322 2356677765321 344332 22 25689999999999764 78
Q ss_pred CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEE
Q psy670 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNI 405 (540)
Q Consensus 341 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V 405 (540)
|.+.|++++..+..... .. .+.|.|..+..+|+|.|+|.|.|..+.. ++++.|.|
T Consensus 157 p~v~W~~~~~~~~~~~~------~~----~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 157 LTFSWTGNALSPLDPET------TR----SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp CEEEEESSTTSSSCSSC------CC----SSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred ceEEEeCCCCccCCCCc------ee----EEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 89999999865432110 11 1279999999999999999999986543 44554443
No 263
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.72 E-value=9.3e-17 Score=146.29 Aligned_cols=190 Identities=15% Similarity=0.226 Sum_probs=123.0
Q ss_pred cCCceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEE
Q psy670 212 EKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 212 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~ 270 (540)
..+....+.+|++++|.|.+.+.+ .+.+.|++. +..+. ...++.+..... .....|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~ 83 (253)
T 3uzq_A 6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTS--SNTAYLH 83 (253)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETT--TTEEEEE
T ss_pred ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecC--CCeEEEE
Confidence 345566788999999999998854 678999982 21110 012333322221 2234699
Q ss_pred EeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccC--------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670 271 ITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAE--------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP 341 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~ 341 (540)
|.+++.+|+|.|.|.+.+..+.. .....+.|..... ....++.+...+....+.+|++++|.|.+.+.+.+
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 99999999999999999865443 3445566653200 01124566666777889999999999999998876
Q ss_pred ----eEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEE
Q psy670 342 ----EIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLT 402 (540)
Q Consensus 342 ----~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~ 402 (540)
.+.|+++ +.... ...++.. ...+. ..+|.|.+++.+|+|.|.|.|.|..+.. ..-..
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~--~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~ 239 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSG--SGSRT--DFTLTINPVEADDVATYFCQRSNEVPWTFGGGTK 239 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETT--EEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEE
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEE--eCCCC--EEEEEECCCCHHHCEEEEEEEccCCCcEECCCEE
Confidence 8999984 22111 0122222 12222 3379999999999999999999865432 23345
Q ss_pred EEEEE
Q psy670 403 LNIEM 407 (540)
Q Consensus 403 l~V~~ 407 (540)
|.|..
T Consensus 240 l~v~~ 244 (253)
T 3uzq_A 240 LEIKR 244 (253)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 66654
No 264
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.72 E-value=2.5e-16 Score=140.38 Aligned_cols=179 Identities=13% Similarity=0.230 Sum_probs=114.7
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.+ .+.+.|||.. .. +. ...++.+..+. .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDN---SKNTLYLQMNS 85 (223)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEET---TTTEEEEEECS
T ss_pred CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecC---CCCEEEEEECC
Confidence 45688999999999998765 4689999842 11 10 11233333221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCc----e--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEE
Q psy670 170 PTKDDGGNYRCNACNSIG----E--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKW 241 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~----~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W 241 (540)
++.+|+|.|.|.+.+..+ . ....+.|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 162 (223)
T 1dee_B 86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS---ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW 162 (223)
T ss_dssp CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC---CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC---CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence 999999999999998652 1 1234567776321 124444322212234689999999999885 776 9999
Q ss_pred Ee-CCEEeeccCceEEEEecCCCeEEEEEEEeCCCC--CCcEEEEEEEEcCCCCeee
Q psy670 242 FK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIG--PDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 242 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~ 295 (540)
++ +|..+..................+.|.|..... +|.|.|+|.+.|..+....
T Consensus 163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~ 219 (223)
T 1dee_B 163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK 219 (223)
T ss_dssp EETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred EccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence 99 887764310000000111122235688888776 7899999999998876544
No 265
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.72 E-value=6.9e-18 Score=149.87 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=115.7
Q ss_pred CCeeccCCceee--cCCCCeEEEEEEeccc---CC-CeEEEEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCC
Q psy670 207 APSFIEKPRIIP--NESGTLIQMKCKCSAK---PR-PEVKWFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPD 278 (540)
Q Consensus 207 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~---p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d 278 (540)
+|.+...+.... +.+|+.+.|.|.+.+. |. +.|.|++++..+...... .......+ ...+.|.|.+++.+|
T Consensus 9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-EEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-cccccCCCeEEEEEEEEEcHHHcCC
Confidence 444433333333 7789999999999886 33 689999999876543211 11111222 234579999999999
Q ss_pred cEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCC
Q psy670 279 SGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTD 356 (540)
Q Consensus 279 ~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~ 356 (540)
+|.|+|.+.+..+.......+.. .. ....+|.+...+.......|+.++|.|.+.| +|.+ .|.|+++|..+....
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~--~~-~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 164 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISK--IK-GLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK 164 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECC--CC-CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred CCeEEEEEECCcCCCcceEEEee--cC-CCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence 99999999998664312222211 00 1122555544332222235999999999998 5765 999999999874322
Q ss_pred ceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 357 RISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 357 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
........++. ...+.|.|.....+|.|.|+|.|.|....
T Consensus 165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 11111112222 12335777666666799999999998654
No 266
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.72 E-value=1.3e-17 Score=146.77 Aligned_cols=175 Identities=12% Similarity=0.147 Sum_probs=111.0
Q ss_pred ccCCCeEEEEEEEeecC---C-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 114 HQDGDLLVMECVLEASP---M-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~p---~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
+.+|++++|.|.+.|.+ . ..|.|+|++..+.............+.....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 78999999999998874 2 4899999997764321100000011111233589999999999999999999987753
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDT--Y 265 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~--~ 265 (540)
.....+.+.. ....+|.+...+.......|+.+.|.|.+.+ +|+ ..+.|+++|..+.......... ..++. .
T Consensus 95 ~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~-~~~g~~~~ 170 (207)
T 2vol_A 95 PIEKTISKTK---GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM-DTDGSYFV 170 (207)
T ss_dssp CEEEEECCCC---CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE-CTTSCEEE
T ss_pred ceEEEeccCC---CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE-CCCCCEEE
Confidence 2222222100 0113565543333222335999999999998 555 4899999999875432111111 22232 2
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.+.|.+.....+|.|.|+|.|.|....
T Consensus 171 ~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 171 YSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 345777776667899999999997543
No 267
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.72 E-value=1.5e-16 Score=141.53 Aligned_cols=175 Identities=15% Similarity=0.221 Sum_probs=116.4
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.+ .+.+.|||.. .. +. ...++.+... ......+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~ 85 (220)
T 2fbj_H 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD---NAKNSLYLQMSK 85 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC---SSSCEEEEEECS
T ss_pred CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEee---CCCCEEEEEECC
Confidence 35688999999999998765 5689999842 11 10 1134443322 112345899999
Q ss_pred CCCCCCeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC--CeEEEEe
Q psy670 170 PTKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR--PEVKWFK 243 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~ 243 (540)
++.+|+|.|.|.+.+..+. ....+.|.|..... .+|.+...+ ...+..|+.++|.|.+.+. |. +.+.|++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~ 161 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA---RNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK 161 (220)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC---BCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred CChhhCEEEEEEEeccccccceecCCEEEEecCCCC---CCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence 9999999999999987542 12345677764221 245554333 3346789999999999885 76 6899999
Q ss_pred CCEEeeccCceEEEEecCCCe--EEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 244 ADKLVKESSKIKIIVNEQDDT--YEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
++..+........ . ...+. ..+.|.|.....+|.|.|+|.+.|..+...
T Consensus 162 ~~~~~~~~~~~~~-~-~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 162 SGKDITTVNFPPA-L-ASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp CCSSCEEEECCCE-E-CSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred CCEecceEecCce-E-CCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 9876521100001 1 12222 234689988888899999999999877643
No 268
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.72 E-value=1.1e-16 Score=146.12 Aligned_cols=186 Identities=17% Similarity=0.276 Sum_probs=120.9
Q ss_pred eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670 216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
...+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ...++.+.... ......|.|.++
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v 88 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDK--SSSTAYLELRSL 88 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG--GGTEEEEEECSC
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEec--CCCEEEEEECCC
Confidence 45578999999999998865 6789999732 1110 01222222211 112346999999
Q ss_pred CCCCcEEEEEEEEcC----CCCeeeeEEEEEeeccC---------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670 275 IGPDSGTYRCNVKNE----FGESNANLNLNIEAEAE---------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP 341 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~----~~~~~~~~~l~v~~~~~---------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~ 341 (540)
+.+|+|.|.|.+.+. .+.......|.|...+. ....++.+...+....+.+|++++|.|.+.+.|.+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 168 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS 168 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence 999999999999987 22233445666653210 00115566666777889999999999999998888
Q ss_pred eEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEE
Q psy670 342 EIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIE 406 (540)
Q Consensus 342 ~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 406 (540)
.+.|++. +..+. ...++.. ...+. ..+|.|.+++.+|+|.|+|.|.|..+.. ..-..|.|.
T Consensus 169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~--~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSG--SRSGS--DYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp CEEEEEECTTCCEEEEEETTTEECTTSCTTEEE--EEETT--EEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEeccccCCccCCCEEE--ecCCC--EEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence 9999984 22111 1123322 22222 3379999999999999999999864332 334566665
Q ss_pred E
Q psy670 407 M 407 (540)
Q Consensus 407 ~ 407 (540)
.
T Consensus 245 ~ 245 (256)
T 3umt_A 245 R 245 (256)
T ss_dssp -
T ss_pred C
Confidence 5
No 269
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.72 E-value=9.7e-18 Score=147.62 Aligned_cols=174 Identities=11% Similarity=0.138 Sum_probs=110.5
Q ss_pred cCCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCce-EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 219 NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKI-KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
+.+|+++.|.|.+.+.+ ...|.|++++..+...... ..............|.|.+++.+|+|.|+|.+.+..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 77899999999998874 3489999999776432110 000011111223579999999999999999999987754
Q ss_pred eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-eeE
Q psy670 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-KYH 370 (540)
Q Consensus 294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~ 370 (540)
.....+.+.. ....+|.+...+.......|+.+.|.|.+.|. |. +.|.|+++|..+............++. ...
T Consensus 95 ~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~ 171 (207)
T 2vol_A 95 PIEKTISKTK---GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVY 171 (207)
T ss_dssp CEEEEECCCC---CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEE
T ss_pred ceEEEeccCC---CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEE
Confidence 2222222100 01225655443322223358999999999984 55 389999999987543211111122222 223
Q ss_pred EEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 371 IRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 371 ~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
+.|.|.....+|.|.|+|.|.|...
T Consensus 172 s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 172 SKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred EEEEECHHHcCCCCEEEEEEECCCC
Confidence 4677877767789999999999864
No 270
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.72 E-value=2.7e-18 Score=152.01 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=116.3
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|+ +..+. ...++.... ......|.|.+++.+|+|
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 82 (212)
T 1nfd_E 8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-----SGTTATLTISGAQPEDEA 82 (212)
T ss_dssp EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGGGCS
T ss_pred eEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-----eCCEEEEEECcCCcccCE
Confidence 45688999999999997777788999984 33221 023333322 112348999999999999
Q ss_pred EEEEEEEcC-Ccee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEEeecc
Q psy670 177 NYRCNACNS-IGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKLVKES 251 (540)
Q Consensus 177 ~Y~C~~~~~-~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~l~~~ 251 (540)
.|+|.+.+. .+.. .....|.|..... .+|.+...+....+.+|+.+.|.|.+.+. |+ +.+.|+++|..+...
T Consensus 83 ~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~---~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~ 159 (212)
T 1nfd_E 83 AYYCLSSYGDNNDLVFGSGTQLTVLRGPK---SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG 159 (212)
T ss_dssp EEEEEEEETTTTEEEECCCEEEEEECCCC---BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred EEEEEEEcccCcccccCCceEEEEccCCC---CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence 999999963 2221 2334555543211 25555544433344579999999999885 55 799999999988654
Q ss_pred CceEEEEecCC-CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 252 SKIKIIVNEQD-DTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 252 ~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
........... ....+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (212)
T 1nfd_E 160 VKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV 202 (212)
T ss_dssp CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred eecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence 22111111111 1223468899999999999999999987653
No 271
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.72 E-value=4.6e-17 Score=145.32 Aligned_cols=182 Identities=13% Similarity=0.191 Sum_probs=116.8
Q ss_pred ccccCCCeEEEEEEEeecCCC---ceEEEeCCEeecC----------------CCceEEEEe--ecCcceEEEEEEEcCC
Q psy670 112 TIHQDGDLLVMECVLEASPMP---DIIWYQGTKVIED----------------TGRIKMSKK--SIGKDTYLLRLEINNP 170 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~----------------~~~~~~~~~--~~~~~~~~~~L~i~~~ 170 (540)
+.+..|++++|.|.+.+.+.+ .+.|+|++..+.. ..+...... ........++|.|.++
T Consensus 11 V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 90 (225)
T 4fmk_A 11 VRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGL 90 (225)
T ss_dssp EEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSC
T ss_pred EEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccC
Confidence 457789999999999877766 4899997643310 011111100 0011112347999999
Q ss_pred CCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEe
Q psy670 171 TKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLV 248 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l 248 (540)
+.+|+|.|+|.+.+..+.. .....+.+.. +|.+...+.......++.+.+.|.+. +.|++.+.|++++..+
T Consensus 91 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~ 163 (225)
T 4fmk_A 91 RVEDEGNYTCEFATFPNGTRRGVTWLRVIA-------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGE 163 (225)
T ss_dssp CGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred CHHHCcceEEEEEeCCCcceeeeeeeeeec-------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence 9999999999999876654 3334444442 34333334444556677777777765 5888899999987665
Q ss_pred eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
....... ..........+.|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus 164 ~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 164 AKDTQEP-GIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL 215 (225)
T ss_dssp EEEEEEE-CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred cCCcceE-EecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence 4322111 111122233457999999999999999999998877655444444
No 272
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.71 E-value=2.4e-17 Score=149.54 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=115.9
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEe----------------CCEeecCC---CceEEEEeecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQ----------------GTKVIEDT---GRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
...+.+|++++|.|.+.+.+.+.+.|+| ++...... .++.+.... ...++|.|.+++
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~ 85 (246)
T 4dzb_B 10 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS----LTLSTLTVTSAH 85 (246)
T ss_dssp EEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE----TTEEEEEECSCC
T ss_pred EEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC----CCEEEEEECCCC
Confidence 3567899999999999888899999999 22222211 344333211 123489999999
Q ss_pred CCCCeEEEEEEEcCCc----eeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecccCCC--eEEEEeC
Q psy670 172 KDDGGNYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSAKPRP--EVKWFKA 244 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~ 244 (540)
.+|+|.|.|.+.+..+ .....+.|.|..... ...+|.+. ..+....+.+|+.++|.|.+.+.|++ .+.|+++
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~ 164 (246)
T 4dzb_B 86 PEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 164 (246)
T ss_dssp GGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred HHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCC-cccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEEC
Confidence 9999999999987643 222344566654111 11244432 33444445569999999999885544 8999999
Q ss_pred CEEeeccCceEEEE--e---cCCCe--EEEEEEEeCCCCCC-cEEEEEEEEcCCCCe
Q psy670 245 DKLVKESSKIKIIV--N---EQDDT--YEIICEITDPIGPD-SGTYRCNVKNEFGES 293 (540)
Q Consensus 245 ~~~l~~~~~~~~~~--~---~~~~~--~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~ 293 (540)
|..+.......... . +..+. ..+.|.|.....+| .|.|+|.|.|.....
T Consensus 165 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~ 221 (246)
T 4dzb_B 165 GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 221 (246)
T ss_dssp TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence 99886532211000 0 01222 23468888887778 999999999975543
No 273
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.71 E-value=1.1e-17 Score=149.25 Aligned_cols=180 Identities=16% Similarity=0.248 Sum_probs=118.1
Q ss_pred CccccCCCeEEEEEEEee-cCCCc----eEEEeCCEeec-------------CCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEA-SPMPD----IIWYQGTKVIE-------------DTGRIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~-~p~~~----v~W~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
.+.+.+|++++|.|.+.+ .+.+. +.|+|++.... ...+..+............+|.|.+++.
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~ 87 (221)
T 3eow_R 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRV 87 (221)
T ss_dssp CCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSSC
T ss_pred cEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCCh
Confidence 346779999999999943 44444 99999864221 0223333321111111234899999999
Q ss_pred CCCeEEEEEEEcCC-ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeE-EEEEEec-ccCCCeEEEEeCCEEee
Q psy670 173 DDGGNYRCNACNSI-GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI-QMKCKCS-AKPRPEVKWFKADKLVK 249 (540)
Q Consensus 173 ~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~~-~~p~~~v~W~~~~~~l~ 249 (540)
+|+|.|+|.+.+.. +.....+.|.|.. +|.+...+.... ..|+.+ .|.|.+. ++|.+.++|++++....
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~~-------~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~ 159 (221)
T 3eow_R 88 EDEGSYTCLFVTFPQGSRSVDIWLRVLA-------KPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 159 (221)
T ss_dssp CCCSCBEEEEEESSSCSCEEECCCCCCC-------CCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSCCC
T ss_pred HHCeEEEEEEEeCCCCceEEEEEEEEEE-------CCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCCCCC
Confidence 99999999999876 6667777777765 555543332222 568888 5999987 79999999998754332
Q ss_pred ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670 250 ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299 (540)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 299 (540)
..... ...........+.|.|.++..+|.|.|+|.|.|..+.....+.+
T Consensus 160 ~~~~~-~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v 208 (221)
T 3eow_R 160 QTSQV-PGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTV 208 (221)
T ss_dssp CCEEE-CCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEE
T ss_pred cccee-ecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEE
Confidence 21110 00111222345689999999999999999999987765544433
No 274
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.71 E-value=1.2e-16 Score=145.59 Aligned_cols=186 Identities=15% Similarity=0.243 Sum_probs=120.4
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeC--CEee-----------------cCCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVI-----------------EDTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.+ .+.+.|+|. +..+ ....++.+.... .....+|.|.+
T Consensus 10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~ 86 (253)
T 3uzq_A 10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADT---SSNTAYLHLSS 86 (253)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeec---CCCeEEEEeCC
Confidence 46788999999999998754 678999992 2111 011333333221 11234799999
Q ss_pred CCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcC--------CCCCCCeeccCCceeecCCCCeEEEEEEecccCCC---
Q psy670 170 PTKDDGGNYRCNACNSIGES-NANIALNFQGGEN--------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP--- 237 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--- 237 (540)
++.+|+|.|+|.+.+..+.. .....|.|..... ....++.+...+....+.+|++++|.|.+.+.+.+
T Consensus 87 v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~ 166 (253)
T 3uzq_A 87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGN 166 (253)
T ss_dssp CCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTE
T ss_pred CCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCC
Confidence 99999999999999865443 3455666664200 01124556666777888999999999999987776
Q ss_pred -eEEEEeC--CEEee---c---------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEE
Q psy670 238 -EVKWFKA--DKLVK---E---------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNI 301 (540)
Q Consensus 238 -~v~W~~~--~~~l~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v 301 (540)
.+.|+++ +..+. . ..++.... .. ....|.|.+++.+|+|.|.|.+.+..+.. .....|.|
T Consensus 167 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~--~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v 242 (253)
T 3uzq_A 167 SFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG--SR--TDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI 242 (253)
T ss_dssp ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ET--TEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred cEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC--CC--CEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence 8999984 22111 0 01222111 11 12479999999999999999999865432 23455666
Q ss_pred ee
Q psy670 302 EA 303 (540)
Q Consensus 302 ~~ 303 (540)
..
T Consensus 243 ~~ 244 (253)
T 3uzq_A 243 KR 244 (253)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 275
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.71 E-value=2.9e-17 Score=146.28 Aligned_cols=179 Identities=15% Similarity=0.240 Sum_probs=116.5
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---eec----------------cCceEEEEecCCCeEEEEEE
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VKE----------------SSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~~----------------~~~~~~~~~~~~~~~~~~l~ 270 (540)
+....+.+|++++|.|.+.+.+ .+.+.|++++ .. +.. ..++.+.... ......|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~ 84 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD--SKSSVYLQ 84 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG--GGTEEEEE
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC--CCCeEEEE
Confidence 3445678899999999998765 6789999853 11 100 1223322221 11234799
Q ss_pred EeCCCCCCcEEEEEEEEcCCCCe-e--eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670 271 ITDPIGPDSGTYRCNVKNEFGES-N--ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVW 345 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~~~~-~--~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W 345 (540)
|.+++.+|+|.|.|.+.+..+.. . ....+.|.... ..+|.+...+....+.+|+.++|.|.+.|. |.| .|.|
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 161 (220)
T 1pz5_B 85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT---TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKW 161 (220)
T ss_dssp ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC---CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEE
T ss_pred EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC---CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEE
Confidence 99999999999999999875432 1 34556665321 124555443322335689999999999987 888 9999
Q ss_pred EECCEEcc--CCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 346 FHEGKELQ--QTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 346 ~~~~~~~~--~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
++++.... ...... ..+. ...+.|.|.....+| |.|+|.|.|..|...+++.
T Consensus 162 ~~~~~~~~~~~~~~~~----~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 162 NYGALSSGVRTVSSVL----QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp GGGTCCTTEEECCCEE----ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred ecCCcccceEEcCCcc----cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 99876421 011100 1111 123479998888766 9999999999987666543
No 276
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.71 E-value=5.6e-17 Score=138.58 Aligned_cols=154 Identities=17% Similarity=0.263 Sum_probs=108.3
Q ss_pred CccccCCCeEEEEEEEe--ecCCCceEEEe--CCEeec----------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLE--ASPMPDIIWYQ--GTKVIE----------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~--~~p~~~v~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
.+...+|++++|.|... +.+.+.|.|++ ++..+. ...+..+.. +. +|.|.+++.+|+|
T Consensus 8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~-----ng---sL~I~~v~~~DsG 79 (182)
T 1hnf_A 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-----NG---TLKIKHLKTDDQD 79 (182)
T ss_dssp EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECT-----TS---CEEECSCCGGGCE
T ss_pred EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECC-----CC---CEEECCCChhhCE
Confidence 34567899999999542 24566899999 887662 233443331 11 7999999999999
Q ss_pred EEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCce
Q psy670 177 NYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI 254 (540)
Q Consensus 177 ~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~ 254 (540)
.|+|.+.+..|.. ...+.|.|..... .|.+.. .+..+.|.|.+.+.|.+.+.|+++|..+ ....
T Consensus 80 ~Y~c~~~n~~g~~~~~~~~~L~V~~~~~----~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~- 145 (182)
T 1hnf_A 80 IYKVSIYDTKGKNVLEKIFDLKIQERVS----KPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQ- 145 (182)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEECCCC----CCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EEES-
T ss_pred EEEEEEEeCCCceeEEEEEEEEEcCcCC----CCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CCCC-
Confidence 9999999987764 3566777774211 333322 2336899999999889999999999887 2111
Q ss_pred EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670 255 KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299 (540)
Q Consensus 255 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 299 (540)
..+.+.. ..+|+|.|+|.|.|..+.......+
T Consensus 146 ------------~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 146 ------------RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp ------------SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred ------------cEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 0233333 4679999999999998877665544
No 277
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.71 E-value=1.8e-16 Score=144.58 Aligned_cols=183 Identities=16% Similarity=0.284 Sum_probs=119.6
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EE---ee----------ccCceEEEEecCCCeEEEEEEEe
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KL---VK----------ESSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---l~----------~~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
..+...+..+.+.+|++++|.|.+.+.|.+.+.|++.. .. +. ...++....... ....+|.|.
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL~I~ 81 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS--DSSFHLRKA 81 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETT--TTEEEEEES
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCC--CCEEEEEEC
Confidence 34555667788889999999999999899999999832 11 10 012222221111 123479999
Q ss_pred CCCCCCcEEEEEEEEcCCCCe----eeeEEEEEeecc-------------CCCCCCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670 273 DPIGPDSGTYRCNVKNEFGES----NANLNLNIEAEA-------------EPEGDPPTFIEKPKIRSEQGGKLVVMECKV 335 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~~----~~~~~l~v~~~~-------------~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~ 335 (540)
+++.+|+|.|.|.+.+..+.. .....|.|.... .....++.+...+....+.+|+.++|.|.+
T Consensus 82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 161 (256)
T 3tf7_C 82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQ 161 (256)
T ss_dssp SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEE
T ss_pred CCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEc
Confidence 999999999999999875422 223456665410 001225667777888888899999999999
Q ss_pred EccCCCeEEEEECCE--Ec---c------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 336 KAKPMPEIVWFHEGK--EL---Q------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 336 ~~~p~~~i~W~~~~~--~~---~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
.+. .+.+.|++... .. . ...++... .. .....+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 162 ~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 162 TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT--RT-TQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE--CC-SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE--eC-CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 876 67999998321 10 0 01111111 10 112237999999999999999999997654
No 278
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.71 E-value=9.6e-17 Score=143.43 Aligned_cols=186 Identities=15% Similarity=0.219 Sum_probs=116.0
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----c------------cCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----E------------SSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----~------------~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+....+.+|++++|.|.+.+.+ .+.+.|++.+ ..+. . ..++.+.... ......|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~ 84 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT--SSSTAYMQLS 84 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeC--CCCeEEEEEC
Confidence 4456788999999999998876 6789999853 2110 0 1233332221 1123579999
Q ss_pred CCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECC
Q psy670 273 DPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEG 349 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~ 349 (540)
+++.+|+|.|.|.+.+..+. ......|.|.... ..+|.+........+..|+.++|.|.+.|. |.+ .|.|++++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 161 (227)
T 1mju_H 85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK---TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGS 161 (227)
T ss_dssp SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC---CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC---CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCC
Confidence 99999999999999986321 1223456665421 124554433222345679999999999985 776 99999998
Q ss_pred EEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 350 KELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
..+........ ...+. ...+.|.|..+..+| |.|+|.|.|..+.......+.+..
T Consensus 162 ~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~ 217 (227)
T 1mju_H 162 LSSGVHTFPAV--LQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRG 217 (227)
T ss_dssp BCTTEEECCCE--EETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCC
T ss_pred CcCCcEECCce--ecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCC
Confidence 76431100000 11111 123479999988878 999999999877766666665554
No 279
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.71 E-value=4.5e-17 Score=148.33 Aligned_cols=173 Identities=16% Similarity=0.184 Sum_probs=114.5
Q ss_pred CccccCCCeEEEEEEEeecC-----CCceEEEeCC--Eee---c---------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEASP-----MPDIIWYQGT--KVI---E---------DTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p-----~~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ . ...++.... .....+|.|.+++
T Consensus 43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~ 117 (252)
T 3bkj_L 43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-----SGTDFTLRISRVE 117 (252)
T ss_dssp EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCC
T ss_pred eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-----cCCEEEEEECCCC
Confidence 45688999999999998877 5789999954 111 0 012333321 1123489999999
Q ss_pred CCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEe
Q psy670 172 KDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLV 248 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l 248 (540)
.+|+|.|+|.+.+..+.. ...+.|.|.... .+|.+...+....+.+|+.++|.|.+.+ .|.+ .|.|+++|..+
T Consensus 118 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 193 (252)
T 3bkj_L 118 AEDLGVYYCFQASLVPLTFGAGTKLELKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 193 (252)
T ss_dssp GGGCEEEEEEECSBSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred cccCEEEEEEEEcCCccEECCCEEEEEeCCC----cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence 999999999998875532 223456665321 2455544333222346899999999988 5554 79999999987
Q ss_pred eccCceEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 249 KESSKIKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 249 ~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
........ ......+ ...+.|.|.++..+|+|.|+|.|.|....
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 64411111 1111222 23457999999999999999999997654
No 280
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.71 E-value=1.6e-17 Score=149.53 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=114.2
Q ss_pred CccccCCCeEEEEEEEeecC-CC-ceEEEeCC--Eee---c---------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASP-MP-DIIWYQGT--KVI---E---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p-~~-~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 174 (540)
...+.+|++++|.|.+.+.+ .+ .+.|+|++ ..+ . ...++.... .....+|.|.+++.+|
T Consensus 28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D 102 (234)
T 2j6e_L 28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-----SGTSASLAISGLRSED 102 (234)
T ss_dssp CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-----ETTEEEEEEESCCSTT
T ss_pred cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-----cCCeEEEEECCCCHHH
Confidence 45688999999999997754 34 69999853 211 0 112333221 1123489999999999
Q ss_pred CeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEEee
Q psy670 175 GGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKLVK 249 (540)
Q Consensus 175 ~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~l~ 249 (540)
+|.|+|.+.+..+. ....+.|.|...+. .+|.+...+......+|+.++|.|.+.+. |+ +.+.|+++|..+.
T Consensus 103 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 179 (234)
T 2j6e_L 103 EADYYCATWDDSLSAVIFGGGTKLTVLGQPK---AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK 179 (234)
T ss_dssp CSEEEEEEEETTTTEEEECCCBCCCBCCCCC---CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred CEEEEEEEEcCCcceeEecCCEEEEEecCCC---CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence 99999999988762 22234555543211 24444432322223358899999999884 44 4899999999876
Q ss_pred ccCceEEEEecC--CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670 250 ESSKIKIIVNEQ--DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 250 ~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 295 (540)
............ .....+.|.|.++..+|.|.|+|.|.|.......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 227 (234)
T 2j6e_L 180 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK 227 (234)
T ss_dssp SSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred CCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence 542110001111 1223357889999999999999999998765433
No 281
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.71 E-value=5.5e-17 Score=144.88 Aligned_cols=175 Identities=15% Similarity=0.237 Sum_probs=112.7
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. ...++.+.... .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD---LEDFVYLQMHK 85 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecC---CCCEEEEEECC
Confidence 35688999999999998776 6789999842 2110 12344443221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCc-----e---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eE
Q psy670 170 PTKDDGGNYRCNACNSIG-----E---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EV 239 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v 239 (540)
++.+|+|.|.|.+.+..+ . ....+.|.|..... .+|.+........+.+|+.++|.|.+.+. |.+ .|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v 162 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV 162 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC---BCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC---cCCeEEEecccccccCCCcEEEEEEEEeEECCCeEE
Confidence 999999999999998754 1 12345677764211 23444322222235679999999999885 776 99
Q ss_pred EEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 240 KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 240 ~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.|++++..+...........+......+.|.|.++..+| |.|+|.|.|..+.
T Consensus 163 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 163 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp ECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred EEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 999998653211000011111122234578999988888 9999999996554
No 282
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.71 E-value=7.5e-17 Score=143.56 Aligned_cols=177 Identities=20% Similarity=0.308 Sum_probs=116.0
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---e-c--C-------------CCceEEEEeecCcceEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---I-E--D-------------TGRIKMSKKSIGKDTYLLRLEI 167 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~-~--~-------------~~~~~~~~~~~~~~~~~~~L~i 167 (540)
+..+.+|++++|.|.+.+.+ .+.+.|+|++ .. + . . ..++.+.... .....+|.|
T Consensus 9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I 85 (220)
T 1pz5_B 9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD---SKSSVYLQM 85 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG---GGTEEEEEE
T ss_pred CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC---CCCeEEEEE
Confidence 35678999999999998766 6789999953 11 1 0 0 1344433221 122348999
Q ss_pred cCCCCCCCeEEEEEEEcCCcee-E--EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEE
Q psy670 168 NNPTKDDGGNYRCNACNSIGES-N--ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWF 242 (540)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~~~~-~--~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~ 242 (540)
.+++.+|+|.|.|.+.+..+.. . ..+.|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 162 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT---TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN 162 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC---CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEG
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC---CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEe
Confidence 9999999999999999875321 1 34566665321 124554433333345789999999999985 888 99999
Q ss_pred eCCEEee--ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670 243 KADKLVK--ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL 297 (540)
Q Consensus 243 ~~~~~l~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 297 (540)
+++.... ..... . ........+.|.|.++..++ |.|+|.|.|..+.....+
T Consensus 163 ~~~~~~~~~~~~~~--~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 163 YGALSSGVRTVSSV--L-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK 215 (220)
T ss_dssp GGTCCTTEEECCCE--E-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred cCCcccceEEcCCc--c-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence 9886311 11110 0 11111224578998888766 999999999988655443
No 283
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.71 E-value=1e-16 Score=143.51 Aligned_cols=178 Identities=16% Similarity=0.308 Sum_probs=113.0
Q ss_pred CccccCCCeEEEEEEEeecCC----CceEEEeC--CEee----c------------CCCceEEEEeecCcceEEEEEEEc
Q psy670 111 PTIHQDGDLLVMECVLEASPM----PDIIWYQG--TKVI----E------------DTGRIKMSKKSIGKDTYLLRLEIN 168 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~--~~~~----~------------~~~~~~~~~~~~~~~~~~~~L~i~ 168 (540)
...+.+|++++|.|.+.+.+. +.+.|+|+ +..+ . ...++.+..... ....+|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~ 85 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS---RDMVFMKIT 85 (228)
T ss_dssp CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT---TTEEEEEEC
T ss_pred ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC---CCeEEEEEc
Confidence 356789999999999988764 78999984 2211 0 012333332211 123489999
Q ss_pred CCCCCCCeEEEEEEEcCCc------e---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-
Q psy670 169 NPTKDDGGNYRCNACNSIG------E---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP- 237 (540)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~~~------~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~- 237 (540)
+++.+|+|.|.|.+.+..+ . ....+.|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.+
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~ 162 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK---TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV 162 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC---CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCC
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC---CCCCEEEEecccccccCCCCEEEEEEEccEeCCCE
Confidence 9999999999999998654 1 1123667776321 124555433323335689999999999885 777
Q ss_pred eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeee
Q psy670 238 EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN 296 (540)
Q Consensus 238 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 296 (540)
.+.|++++..+......... ........+.|.|..+..++ |.|+|.|.|..+.....
T Consensus 163 ~v~W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~ 219 (228)
T 3bae_H 163 TLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD 219 (228)
T ss_dssp EEEEGGGTCCTTEEEEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred EEEEeeCCcccCceEcCcee-CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence 99999988753211111111 11112234578999988866 99999999987765433
No 284
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.71 E-value=7.9e-17 Score=142.67 Aligned_cols=164 Identities=14% Similarity=0.234 Sum_probs=110.8
Q ss_pred eEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE--Ec------------cCCCceEEEEEecCCeeEEEEEEcCC
Q psy670 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--EL------------QQTDRISWNVTLKGDKYHIRLEVKDP 378 (540)
Q Consensus 313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~ 378 (540)
.+...+....+.+|+.+.|.|.+.+.|.+.+.|++.+. .. ....++... ..+. ..+|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v 78 (213)
T 3r06_A 3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS--GSGR--DSSFTISSL 78 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSC
T ss_pred eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe--ccCC--EEEEEECCC
Confidence 34444667788999999999999999999999998321 00 012233332 1222 338999999
Q ss_pred CCCCCeeEEEEEEcCCee-eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeecee
Q psy670 379 RKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVI 457 (540)
Q Consensus 379 ~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 457 (540)
+.+|+|.|+|.|.|..+. ......|.|.. ...+|.+
T Consensus 79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-------------------------------------------~~~~p~v 115 (213)
T 3r06_A 79 ESEDIGSYYCQQYYNYPWTFGPGTKLEIKR-------------------------------------------ADAKPTV 115 (213)
T ss_dssp CGGGCSEEEEEECSSSSCEECCCEEEEECC-------------------------------------------CCBCCEE
T ss_pred CcccCEEEEEecccCCceEEcCCceEEEec-------------------------------------------cCCCcee
Confidence 999999999999987642 23345566532 1126666
Q ss_pred ecCCcEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCC------------eE----EEEEEec---CCeEEEEE
Q psy670 458 REVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDN------------KH----VVHIEQV---KDVSMNFE 516 (540)
Q Consensus 458 ~~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~------------~~----~~~~~~~---~~g~y~c~ 516 (540)
...+....+..|+.++|.|.+.|.+++ .++|+|+|..+..+. .+ .+.+... +.|.|+|.
T Consensus 116 ~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~ 195 (213)
T 3r06_A 116 SIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCE 195 (213)
T ss_dssp EEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEE
T ss_pred eeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEE
Confidence 654444455678899999999987654 899999999886531 11 2234443 48999999
Q ss_pred Eeeeeee
Q psy670 517 LWLGIVE 523 (540)
Q Consensus 517 ~~~~~~~ 523 (540)
+....+.
T Consensus 196 v~n~~~~ 202 (213)
T 3r06_A 196 VTHKTST 202 (213)
T ss_dssp EEETTCS
T ss_pred EEecccC
Confidence 9875443
No 285
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.71 E-value=6.4e-17 Score=144.56 Aligned_cols=182 Identities=13% Similarity=0.218 Sum_probs=112.1
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee------c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI------E-----------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ . ...++.+..+. .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (227)
T 1mju_H 9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT---SSSTAYMQLSS 85 (227)
T ss_dssp EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred CeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeC---CCCeEEEEECC
Confidence 45688999999999998776 6789999853 211 0 02333333221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCE
Q psy670 170 PTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADK 246 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~ 246 (540)
++.+|+|.|.|.+.+..+. ....+.|.|.... ..+|.+........+.+|+.++|.|.+.+. |.+ .+.|++++.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 162 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK---TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL 162 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECSSC---CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcCCC---CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence 9999999999999886432 1233467776421 124444332222345679999999999984 776 999999987
Q ss_pred EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670 247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300 (540)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 300 (540)
.+......... ........+.|.|..+..+| |.|+|.|.|..+.......+.
T Consensus 163 ~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~ 214 (227)
T 1mju_H 163 SSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIE 214 (227)
T ss_dssp CTTEEECCCEE-ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred cCCcEECCcee-cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeC
Confidence 64211110111 11112234579999988888 999999999766544444443
No 286
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.71 E-value=2.3e-16 Score=142.26 Aligned_cols=173 Identities=16% Similarity=0.278 Sum_probs=111.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEee---------------cCCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI---------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 173 (540)
...+.+|++++|.|. .+.|.+.+.|+|+ +..+ ....++.+.. ......+|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~ 83 (238)
T 2p1y_A 9 NKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR----PSQENFSLILELATPS 83 (238)
T ss_dssp EEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC----CSSSBCEEEESSCCGG
T ss_pred ceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc----cCCceEEEEEecCCcc
Confidence 356889999999999 6888899999995 2111 0122333322 0111237999999999
Q ss_pred CCeEEEEEEEcCCcee-----EEEEEEEEecCcCCC-----CCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe
Q psy670 174 DGGNYRCNACNSIGES-----NANIALNFQGGENGA-----GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK 243 (540)
Q Consensus 174 d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~-----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~ 243 (540)
|+|.|+|.+.+..+.. .....|.|....... ...+.+...+....+.+|+.++|.|.+.+.|.+.+.|++
T Consensus 84 DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k 163 (238)
T 2p1y_A 84 QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQ 163 (238)
T ss_dssp GCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEE
T ss_pred cCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEE
Confidence 9999999999875421 123456665421100 000144455667778899999999999999889999999
Q ss_pred CCE-----Eee---------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 244 ADK-----LVK---------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 244 ~~~-----~l~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
++. .+. ...++...... ......|.|.+++.+|+|.|+|.+.|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 164 QFPGEGPALLISILSVSDKKEDGRFTIFFNK--REKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp ECTTSCCEEEEEEETTCSEEEETTEEEEEET--TTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred ECCCCCCEEEEEEccCCCcccCCceEEEecC--CCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 641 110 11222222111 1123479999999999999999999873
No 287
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.71 E-value=4.3e-17 Score=145.51 Aligned_cols=183 Identities=14% Similarity=0.200 Sum_probs=115.4
Q ss_pred CceeecCCCCeEEEEEEecccCCC---eEEEEeCCEEeecc----------------CceEEEEe---cCCCeEEEEEEE
Q psy670 214 PRIIPNESGTLIQMKCKCSAKPRP---EVKWFKADKLVKES----------------SKIKIIVN---EQDDTYEIICEI 271 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~l~~~----------------~~~~~~~~---~~~~~~~~~l~i 271 (540)
+..+.+..|++++|.|.+.+.+.+ .|.|+|++..+... .+...... ........+|.|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 335667789999999999887665 48999977543210 00000000 001112246999
Q ss_pred eCCCCCCcEEEEEEEEcCCCCeeeeE-EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECC
Q psy670 272 TDPIGPDSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEG 349 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~~~~~~~-~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~ 349 (540)
.+++.+|+|.|+|.+.+..+...... .+.+.. +|.....+.......++.+.+.|.+. +.|++.+.|++++
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~ 160 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIA-------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSL 160 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSS
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeeec-------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECC
Confidence 99999999999999998766544333 333332 34443333344455677777777765 5788899999987
Q ss_pred EEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 350 KELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
..+...... ....++. ...+.|.|..+..+|+|.|+|.|.|..+....+..+.|
T Consensus 161 ~~~~~~~~~--~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 161 GGEAKDTQE--PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL 215 (225)
T ss_dssp CCEEEEEEE--ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred ccccCCcce--EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence 654332111 1111222 22347999999999999999999999887654444433
No 288
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.71 E-value=4.3e-17 Score=148.41 Aligned_cols=181 Identities=15% Similarity=0.239 Sum_probs=118.4
Q ss_pred eeccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeCCE--E---eec---------cCceEEEEecCCCeEEEEE
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKADK--L---VKE---------SSKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~~--~---l~~---------~~~~~~~~~~~~~~~~~~l 269 (540)
.+...+....+.+|++++|.|.+.+.+ .+.+.|++++. . +.. ..++..... .....|
T Consensus 36 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L 111 (252)
T 3bkj_L 36 LMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGS----GTDFTL 111 (252)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEE
T ss_pred EEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEcc----CCEEEE
Confidence 344456677788999999999998877 57899999541 1 100 112222111 112379
Q ss_pred EEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEE
Q psy670 270 EITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWF 346 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~ 346 (540)
.|.+++.+|+|.|.|.+.+..+.. .....+.|.... .+|.+...+....+..|+.++|.|.+.+ .|.+ .|.|+
T Consensus 112 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~ 187 (252)
T 3bkj_L 112 RISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK 187 (252)
T ss_dssp EESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred EECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC----cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEE
Confidence 999999999999999999875532 223456664321 2455554332222346899999999998 4544 79999
Q ss_pred ECCEEccCCCceEEEEE--ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 347 HEGKELQQTDRISWNVT--LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
++|..+........... .++. ...+.|.|..+..+|+|.|+|.|.|.....
T Consensus 188 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 188 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp ETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred ECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 99998765411111111 1121 223579999999999999999999987553
No 289
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.71 E-value=3.7e-16 Score=142.59 Aligned_cols=186 Identities=15% Similarity=0.264 Sum_probs=120.7
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|||.. ..+. ...++.+.... .....+|.|.+
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~ 87 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDK---SSSTAYLELRS 87 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG---GGTEEEEEECS
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEec---CCCEEEEEECC
Confidence 35688999999999998766 6789999832 1110 11333333221 11234799999
Q ss_pred CCCCCCeEEEEEEEcC----CceeEEEEEEEEecCcC---------CCCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670 170 PTKDDGGNYRCNACNS----IGESNANIALNFQGGEN---------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~~~~---------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 236 (540)
++.+|+|.|.|.+.+. .+.....+.|.|...+. ....++.+...+....+.+|++++|.|.+.+.+.
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 167 (256)
T 3umt_A 88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG 167 (256)
T ss_dssp CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence 9999999999999987 23334456677764210 0011456666677788899999999999999888
Q ss_pred CeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEE
Q psy670 237 PEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNI 301 (540)
Q Consensus 237 ~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v 301 (540)
+.+.|++. +..+. ...++..... .....|.|.+++.+|+|.|+|.+.+..... .....|.|
T Consensus 168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V 243 (256)
T 3umt_A 168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRS----GSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEI 243 (256)
T ss_dssp TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEE----TTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecC----CCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEE
Confidence 89999984 22111 0122222111 112469999999999999999999854332 23455666
Q ss_pred ee
Q psy670 302 EA 303 (540)
Q Consensus 302 ~~ 303 (540)
..
T Consensus 244 ~~ 245 (256)
T 3umt_A 244 KR 245 (256)
T ss_dssp C-
T ss_pred EC
Confidence 54
No 290
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.71 E-value=4.2e-16 Score=140.84 Aligned_cols=178 Identities=16% Similarity=0.248 Sum_probs=113.9
Q ss_pred eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--E---Eeec---------cCceEEEEecCCCeEEEEEEEeCCC
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--K---LVKE---------SSKIKIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~---~l~~---------~~~~~~~~~~~~~~~~~~l~i~~~~ 275 (540)
+...+..+.+.+|++++|.|.+.+.|.+.+.|+++. . .+.. ..++..... .....|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~ 79 (242)
T 2znx_A 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS----GTDFTLSINSVE 79 (242)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE----TTEEEEEESSCC
T ss_pred EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC----CCEEEEEECCCC
Confidence 344566778889999999999999888899999853 1 1110 122222211 112479999999
Q ss_pred CCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCC------CCCCeEEeCCceEEeeCCCeEEEEEEEEccC--CCeEEEE
Q psy670 276 GPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPE------GDPPTFIEKPKIRSEQGGKLVVMECKVKAKP--MPEIVWF 346 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~------~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~ 346 (540)
.+|+|.|.|.+.+..+.. .....|.|...+... ..++..+..+....+.+|++++|.|.+.+.| .+.+.|+
T Consensus 80 ~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~ 159 (242)
T 2znx_A 80 TEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXI 159 (242)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEE
T ss_pred hHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeE
Confidence 999999999999875432 234556665432100 0112233333334588999999999999876 4789999
Q ss_pred ECC--EEcc----------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 347 HEG--KELQ----------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 347 ~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
+++ ..+. ...++.. ..+......+|.|.+++.+|+|.|+|.|.|.
T Consensus 160 k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 160 RKFPGNRLEYMGYVSYSGSTYYNPSLKSRISI--TRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EECTTSCEEEEEEECTTSCEEECGGGTTCEEE--EEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eeCCCCCcEEEEEEecCCccccCccccCcEEE--EecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 852 2210 0222222 2222223448999999999999999999984
No 291
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.71 E-value=1e-16 Score=136.94 Aligned_cols=133 Identities=18% Similarity=0.275 Sum_probs=94.7
Q ss_pred ceeeeee--cCeec----------ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee--eeEEEE
Q psy670 24 FQMNMYH--KGSLL----------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS--STVNLN 89 (540)
Q Consensus 24 ~~~~W~k--~~~~l----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~--~~~~l~ 89 (540)
+.|.|+| ++..| ..+.|+.+ ..++ +|+|.+++.+|+|.|+|.+.|..|... ..+.|.
T Consensus 31 ~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~--~~ng-------sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~ 101 (182)
T 1hnf_A 31 DDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL--FKNG-------TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101 (182)
T ss_dssp EEEEEEEGGGCCEEEEECGGGCEEESCTTEEE--CTTS-------CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEeCccCCCCCCCeEEE--CCCC-------CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEE
Confidence 7999999 88876 23344443 2343 899999999999999999999887654 455666
Q ss_pred EeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcC
Q psy670 90 FSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 90 v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
|...... |.+...+..++|.|.+.+.|.+.|.|+++|..+ ..... .|.+..
T Consensus 102 V~~~~~~--------------P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~~--------------~i~~~~ 152 (182)
T 1hnf_A 102 IQERVSK--------------PKISWTCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQR--------------VITHKW 152 (182)
T ss_dssp EECCCCC--------------CEEEEETTTTEEEEECSSCSSCEEEEEESSCEE-EEESS--------------CEEEEC
T ss_pred EcCcCCC--------------CEEEEccCcEEEEeEccCCCCCEEEEEECCEEC-CCCCc--------------EEEEec
Confidence 6643211 122223446999999988888999999999877 11100 233333
Q ss_pred CCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670 170 PTKDDGGNYRCNACNSIGESNANIAL 195 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l 195 (540)
..+|+|.|+|.|.|..+.......+
T Consensus 153 -~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 153 -TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp -CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred -ccCCCcEEEEEEEeCCCCcEEccee
Confidence 4789999999999999887666554
No 292
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.71 E-value=1.1e-17 Score=150.71 Aligned_cols=181 Identities=11% Similarity=0.171 Sum_probs=115.7
Q ss_pred CceeecCCCCeEEEEEEecccC-CC-eEEEEeCC--EEe---e---------ccCceEEEEecCCCeEEEEEEEeCCCCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP-RP-EVKWFKAD--KLV---K---------ESSKIKIIVNEQDDTYEIICEITDPIGP 277 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p-~~-~v~W~~~~--~~l---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 277 (540)
+....+.+|++++|.|.+.+.+ .+ .+.|++++ ..+ . ...++..... .....|.|.+++.+
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~ 101 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKS----GTSASLAISGLRSE 101 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEE----TTEEEEEEESCCST
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEec----CCeEEEEECCCCHH
Confidence 6677788999999999998754 34 69999863 211 0 0122222211 11247999999999
Q ss_pred CcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-C-CeEEEEECCEEc
Q psy670 278 DSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP-M-PEIVWFHEGKEL 352 (540)
Q Consensus 278 d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~-~~i~W~~~~~~~ 352 (540)
|+|.|+|.+.+..+. ......+.|...+ ..+|.+...+.......|+.++|.|.+.+.+ + +.|.|+++|..+
T Consensus 102 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l 178 (234)
T 2j6e_L 102 DEADYYCATWDDSLSAVIFGGGTKLTVLGQP---KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPV 178 (234)
T ss_dssp TCSEEEEEEEETTTTEEEECCCBCCCBCCCC---CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEEC
T ss_pred HCEEEEEEEEcCCcceeEecCCEEEEEecCC---CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEEC
Confidence 999999999998762 2223344443211 1234433322222234688999999999854 3 389999999988
Q ss_pred cCCCceEEEEE-ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 353 QQTDRISWNVT-LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 353 ~~~~~~~~~~~-~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
........... .++. ...+.|.|..+..+|+|.|+|.|.|..+...+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 179 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp CSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred CCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence 65421100000 1111 2234799999999999999999999987755544
No 293
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.70 E-value=7.4e-16 Score=140.67 Aligned_cols=186 Identities=16% Similarity=0.326 Sum_probs=118.4
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e-------------cCCCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I-------------EDTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
+..+.+|++++|.|.+.+. +.+.+.|+|.. .. + ....++.+.... .....+|.|.++
T Consensus 17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v 93 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDT---SKNQVYLQLKSV 93 (257)
T ss_dssp CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEG---GGTEEEEEECSC
T ss_pred CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEec---CCceEEEEECCC
Confidence 3568899999999999884 46799999832 11 1 011233333221 112348999999
Q ss_pred CCCCCeEEEEEEEcCC----ceeEEEEEEEEecCcC-------CCCCCCeeccCCceeecCCCCeEEEEEEecccCCC-e
Q psy670 171 TKDDGGNYRCNACNSI----GESNANIALNFQGGEN-------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP-E 238 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~-------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~ 238 (540)
+.+|+|.|.|.+.+.. ......+.|.|..... ....++.+...+....+.+|++++|.|.+.+.+.+ .
T Consensus 94 ~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~ 173 (257)
T 3gkz_A 94 SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSH 173 (257)
T ss_dssp CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGG
T ss_pred ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceE
Confidence 9999999999999862 2223445666664310 01124556666777888999999999999987777 8
Q ss_pred EEEEeC--CEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEee
Q psy670 239 VKWFKA--DKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEA 303 (540)
Q Consensus 239 v~W~~~--~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~ 303 (540)
+.|++. +..+.. ..++.... .. ....|.|.+++.+|+|.|+|.+.+..... .....|.|..
T Consensus 174 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSG--SG--TSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ET--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred EEEEEECCCCCcEEEEEEccccCCCcCCCEEEec--CC--CEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 999983 222110 01221111 11 12479999999999999999998753322 2223455543
No 294
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.70 E-value=3e-16 Score=139.85 Aligned_cols=181 Identities=12% Similarity=0.204 Sum_probs=115.7
Q ss_pred ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---ee--------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VK--------------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~--------------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
..+.+.+|++++|.|.+.+.+ .+.+.|++.. .. +. ...++.+.... ......|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~ 85 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDN--SKNTLYLQMNS 85 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEET--TTTEEEEEECS
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecC--CCCEEEEEECC
Confidence 355678999999999998765 4689999843 11 10 01223332221 11235799999
Q ss_pred CCCCCcEEEEEEEEcCCC---C---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670 274 PIGPDSGTYRCNVKNEFG---E---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVW 345 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~---~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W 345 (540)
++.+|+|.|.|.+.+..+ . ......|.|.... ..+|.+...+....+..|+.++|.|.+.+. |.+ .+.|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 162 (223)
T 1dee_B 86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS---ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW 162 (223)
T ss_dssp CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC---CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC---CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence 999999999999998653 1 1233466665311 124554432111234689999999999986 777 9999
Q ss_pred EE-CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCC--CCCeeEEEEEEcCCeeeEEEE
Q psy670 346 FH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRK--EDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 346 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
++ +|..+.. .........++. ...+.|.|..... +|.|.|+|.|.|..+......
T Consensus 163 ~~~~g~~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 163 KYKNNSDISS-TRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp EETTSCBCSC-EEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred EccCCCccce-eEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 99 8887754 100000011221 1234788888776 789999999999988765544
No 295
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.70 E-value=3.4e-16 Score=140.34 Aligned_cols=186 Identities=13% Similarity=0.200 Sum_probs=113.2
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---e---c----------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---I---E----------DTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~---~----------~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
+..+.+|++++|.|.+.+.+ ...+.|||.. .. + . ...++.+..+. ....++|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v 85 (232)
T 1dn0_B 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT---SKNQFSLKLSSV 85 (232)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET---TTTEEEEEECSC
T ss_pred CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeC---CCCEEEEEECCC
Confidence 35678999999999998765 5689999842 21 1 0 12344433221 112348999999
Q ss_pred CCCCCeEEEEEEEcCC--c----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCC-CeEEEEEEeccc-CCC-eEEE
Q psy670 171 TKDDGGNYRCNACNSI--G----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESG-TLIQMKCKCSAK-PRP-EVKW 241 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~--~----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~v~W 241 (540)
+.+|+|.|.|.+.+.. + .....+.|.|..... .+|.+........+..| +.++|.|.+.+. |.+ .+.|
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W 162 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSA---SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSW 162 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCC---BCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCC---CCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence 9999999999998421 1 122345677764211 23444321111224467 899999999884 776 9999
Q ss_pred Ee-CCEEeeccCceEEEEecCCCeEEEEEEEeCCCC--CCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 242 FK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIG--PDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 242 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
++ +|..+..................+.|.|..... +|.|.|+|.+.|..+.......+.+.
T Consensus 163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 99 888775410000001111122235788988886 78999999999998876555555443
No 296
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.70 E-value=3.1e-16 Score=145.15 Aligned_cols=188 Identities=17% Similarity=0.314 Sum_probs=122.1
Q ss_pred CCceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEE
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i 271 (540)
.|....+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ...++....... .....|.|
T Consensus 32 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I 109 (282)
T 1qok_A 32 QSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTS--SNTAYLQL 109 (282)
T ss_dssp ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETT--TTEEEEEE
T ss_pred CCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecC--CCeEEEEE
Confidence 34466778999999999998865 5789999953 1110 012333322211 12347999
Q ss_pred eCCCCCCcEEEEEEEEcCCCC-----eeeeEEEEEeeccCC--------CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc
Q psy670 272 TDPIGPDSGTYRCNVKNEFGE-----SNANLNLNIEAEAEP--------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK 338 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~~-----~~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~ 338 (540)
.+++.+|+|.|.|.+.+..|. ......|.|...+.. ...++.+...+....+.+|+.++|.|.+.+.
T Consensus 110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 189 (282)
T 1qok_A 110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS 189 (282)
T ss_dssp CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence 999999999999999998651 113345666553210 0123455556667788999999999999998
Q ss_pred CCCeEEEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEE
Q psy670 339 PMPEIVWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTL 403 (540)
Q Consensus 339 p~~~i~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l 403 (540)
| +.+.|++ +|..+. ...++... ..+. ..+|.|.+++.+|+|.|+|.|.|..+. ...-..|
T Consensus 190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l 264 (282)
T 1qok_A 190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGS--GSGT--SYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKL 264 (282)
T ss_dssp C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEE
T ss_pred C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEe--cCCC--EEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEE
Confidence 8 8999999 554331 12233322 1222 337999999999999999999985432 2334556
Q ss_pred EEEE
Q psy670 404 NIEM 407 (540)
Q Consensus 404 ~V~~ 407 (540)
.|..
T Consensus 265 ~V~~ 268 (282)
T 1qok_A 265 ELKR 268 (282)
T ss_dssp EEC-
T ss_pred EEec
Confidence 6654
No 297
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.70 E-value=4.8e-16 Score=141.84 Aligned_cols=174 Identities=15% Similarity=0.275 Sum_probs=115.6
Q ss_pred CCccccCCCeEEEEEEEeec--CCCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEc
Q psy670 110 KPTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEIN 168 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~ 168 (540)
....+.+|++++|.|.+.+. +.+.+.|+|.. ..+. ...++.+..+. .....+|.|.
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~ 90 (256)
T 3juy_B 14 GAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT---SANTAYMELR 90 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEEC
T ss_pred CCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEec---CCCEEEEEEC
Confidence 45678899999999999773 66789999832 1110 01234333221 1123479999
Q ss_pred CCCCCCCeEEEEEEEcC------------CceeEEEEEEEEecCcCCC--------CCCCeeccCCceeecCCCCeEEEE
Q psy670 169 NPTKDDGGNYRCNACNS------------IGESNANIALNFQGGENGA--------GFAPSFIEKPRIIPNESGTLIQMK 228 (540)
Q Consensus 169 ~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~~~~~--------~~~p~~~~~~~~~~~~~g~~~~l~ 228 (540)
+++.+|+|.|.|.+.+. .+.......|.|....... ..++.+...+....+.+|++++|.
T Consensus 91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~ 170 (256)
T 3juy_B 91 SLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFS 170 (256)
T ss_dssp SCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEE
T ss_pred CCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEE
Confidence 99999999999999986 2333345567776532210 013456666778888999999999
Q ss_pred EEecccCC-CeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 229 CKCSAKPR-PEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 229 C~~~~~p~-~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
|.+.+.+. +.+.|++. +..+. ...++..... . ....|.|.+++.+|+|.|.|.+.+..
T Consensus 171 C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~~DsG~Y~C~~~~~~ 243 (256)
T 3juy_B 171 CRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGS--G--TDFTLTITRVEPEDFALYYCQVYGAS 243 (256)
T ss_dssp EEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--T--TEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred EEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEcc--C--CEEEEEECCCCHhHCEEEEEEEeeCC
Confidence 99998775 89999983 22211 1122222111 1 12469999999999999999998853
No 298
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.70 E-value=3.9e-16 Score=141.93 Aligned_cols=171 Identities=19% Similarity=0.295 Sum_probs=110.4
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC-----Eee---------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT-----KVI---------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|+. ..+ ....++.... .....+|.|.+++.+|+|
T Consensus 13 ~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 87 (250)
T 3esu_F 13 SLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG-----SGTDYSLTISNLEQEDIG 87 (250)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred EEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC-----CCCEEEEEEccCChhhCE
Confidence 356789999999999999999999999943 111 0122332221 112348999999999999
Q ss_pred EEEEEEEcCCcee-EEEEEEEEecCcCC------------CCCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEE
Q psy670 177 NYRCNACNSIGES-NANIALNFQGGENG------------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKW 241 (540)
Q Consensus 177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W 241 (540)
.|.|.+.+..+.. .....|.|...+.. ...++.+...+....+.+|+.++|.|.+.+.+ .+.+.|
T Consensus 88 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W 167 (250)
T 3esu_F 88 TYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNW 167 (250)
T ss_dssp EEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEE
T ss_pred EEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEE
Confidence 9999999865532 23345666542100 00122333445556788999999999998866 788999
Q ss_pred EeC--CEEeec-----------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670 242 FKA--DKLVKE-----------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288 (540)
Q Consensus 242 ~~~--~~~l~~-----------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 288 (540)
+++ +..+.. ..++.+..... ....+|.|.+++.+|+|.|+|.+.+
T Consensus 168 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 168 VKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKS--SSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG--GTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEECCCCCcEEEEEEeccCCccccCccccceEEEEecCC--CCeEEEEECCCCcccCEEEEEEEec
Confidence 997 432211 12222222111 1234799999999999999999997
No 299
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.70 E-value=1.5e-16 Score=141.48 Aligned_cols=177 Identities=15% Similarity=0.270 Sum_probs=115.6
Q ss_pred ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---eec--------------cCceEEEEecCCCeEEEEEEEeC
Q psy670 215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VKE--------------SSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~~--------------~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
....+.+|++++|.|.+.+.+ .+.+.|++.. .. +.. ..++.+... .......|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~L~I~~ 85 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD--NAKNSLYLQMSK 85 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC--SSSCEEEEEECS
T ss_pred CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEee--CCCCEEEEEECC
Confidence 346678999999999998765 5789999843 11 110 122322221 112335899999
Q ss_pred CCCCCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC--CeEEEEE
Q psy670 274 PIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM--PEIVWFH 347 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~--~~i~W~~ 347 (540)
++.+|+|.|.|.+.+..+. ......|.|...+ ..+|.+...+ ...+..|+.++|.|.+.+. |. +.+.|++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~ 161 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES---ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK 161 (220)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC---CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred CChhhCEEEEEEEeccccccceecCCEEEEecCCC---CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence 9999999999999986542 2233466665421 1245554433 2335689999999999986 76 6899999
Q ss_pred CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 348 EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
++..+... ........++. ...+.|.|.....+|.|.|+|.|.|..+...
T Consensus 162 ~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 162 SGKDITTV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp CCSSCEEE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred CCEecceE-ecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 98765210 00000111222 1234699998888999999999999987654
No 300
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.70 E-value=2.5e-16 Score=140.85 Aligned_cols=181 Identities=15% Similarity=0.229 Sum_probs=114.5
Q ss_pred ceeecCCCCeEEEEEEecccCC----CeEEEEeC--CEEe---e-c------------cCceEEEEecCCCeEEEEEEEe
Q psy670 215 RIIPNESGTLIQMKCKCSAKPR----PEVKWFKA--DKLV---K-E------------SSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p~----~~v~W~~~--~~~l---~-~------------~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
....+.+|++++|.|.+.+.|. +.+.|++. +..+ . . ..++.+..... .....|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~ 85 (228)
T 3bae_H 8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS--RDMVFMKIT 85 (228)
T ss_dssp CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT--TTEEEEEEC
T ss_pred CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC--CCeEEEEEc
Confidence 3456788999999999998764 78999984 2211 0 0 12333322211 123579999
Q ss_pred CCCCCCcEEEEEEEEcCCC------C---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-
Q psy670 273 DPIGPDSGTYRCNVKNEFG------E---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP- 341 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~------~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~- 341 (540)
+++.+|+|.|.|.+.+..| . ......|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.+
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~ 162 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK---TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV 162 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC---CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCC
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC---CCCCEEEEecccccccCCCCEEEEEEEccEeCCCE
Confidence 9999999999999998654 1 1123566665311 124555433322335689999999999986 777
Q ss_pred eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 342 EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 342 ~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
.|.|++++..+..... ......+. ...+.|.|.....+| |.|+|.|.|..+.......+
T Consensus 163 ~v~W~~~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~ 222 (228)
T 3bae_H 163 TLTWNSGSLSSGVHTF--PAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI 222 (228)
T ss_dssp EEEEGGGTCCTTEEEE--EEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred EEEEeeCCcccCceEc--CceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence 9999998875421111 11111111 123479999888856 99999999998876554443
No 301
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.69 E-value=1e-16 Score=143.08 Aligned_cols=175 Identities=13% Similarity=0.187 Sum_probs=112.8
Q ss_pred eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670 216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
...+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ...++.+.... ......|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v 86 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD--LEDFVYLQMHKM 86 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecC--CCCEEEEEECCC
Confidence 45677899999999998866 6789999853 2110 01233332221 112357999999
Q ss_pred CCCCcEEEEEEEEcCCC-----C---eeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CCC-eE
Q psy670 275 IGPDSGTYRCNVKNEFG-----E---SNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PMP-EI 343 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~~-~i 343 (540)
+.+|+|.|.|.+.+..+ . ......|.|...+ ..+|.+.. .+.. .+..|+.++|.|.+.+. |.+ .|
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v 162 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS---TKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTV 162 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS---CBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC---CcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEE
Confidence 99999999999998754 1 1234566666421 11444433 3222 24679999999999986 776 99
Q ss_pred EEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 344 VWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 344 ~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
.|++++..+... ........++. ...+.|.|.....+| |.|+|.|.|..+...
T Consensus 163 ~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 163 SWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp ECCTTSCCTTCE-ECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred EEecCCCcCCeE-ecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 999998754211 00000111222 223479999988888 999999999776544
No 302
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.69 E-value=9.2e-16 Score=132.32 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=112.4
Q ss_pred eecCCCCeEEEEEEecccCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 217 IPNESGTLIQMKCKCSAKPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 217 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
+.+..|++++|.|.+ +.|.+ .|.|++.+..+ .+... . .....|.|.+++.+|+|.|.|.+.+..+...
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 86 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--D----TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ 86 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--E----SSEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--c----CCccEEEECccCcccCceEEEEEEeCCCceE
Confidence 577899999999999 87777 99999865433 11111 1 1124799999999999999999999888777
Q ss_pred eeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CC----CeEEEEECCEEccCCCceEEEE------
Q psy670 295 ANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PM----PEIVWFHEGKELQQTDRISWNV------ 362 (540)
Q Consensus 295 ~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~----~~i~W~~~~~~~~~~~~~~~~~------ 362 (540)
..+.|.|.. +|.... .+. .+..|+.+ |+|.+.+. |. +.|.|++++..+..........
T Consensus 87 ~~~~ltV~~-------~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~ 156 (210)
T 1gsm_A 87 HTVQLLVYA-------FPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE 156 (210)
T ss_dssp EEEEEEEEB-------CCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred EEEEEEEEe-------cCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence 788888876 343322 222 45567888 99999985 64 3899999999995432111011
Q ss_pred E---ec-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 363 T---LK-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 363 ~---~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
. .. -...+++|.+.....+|.+.|+|+|.+..-....
T Consensus 157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~ 197 (210)
T 1gsm_A 157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLEL 197 (210)
T ss_dssp CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence 0 01 1122346677677777778999999997644433
No 303
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.69 E-value=5.4e-16 Score=143.56 Aligned_cols=185 Identities=16% Similarity=0.332 Sum_probs=119.4
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. ...++.+.... .....+|.|.+
T Consensus 35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 111 (282)
T 1qok_A 35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDT---SSNTAYLQLSS 111 (282)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEET---TTTEEEEEECS
T ss_pred CEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEec---CCCeEEEEECc
Confidence 45688999999999998775 5789999953 1110 01333333211 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCc---ee--EEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670 170 PTKDDGGNYRCNACNSIG---ES--NANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~---~~--~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 236 (540)
++.+|+|.|.|.+.+..| .. ...+.|.|...+.. ...++.+...+....+.+|++++|.|.+.+.+
T Consensus 112 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~- 190 (282)
T 1qok_A 112 LTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV- 190 (282)
T ss_dssp CCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-
T ss_pred CChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-
Confidence 999999999999998865 11 23346667653210 00134455556677788999999999999988
Q ss_pred CeEEEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEE
Q psy670 237 PEVKWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNI 301 (540)
Q Consensus 237 ~~v~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v 301 (540)
+.+.|++ ++..+.. ..++..... . ....|.|.+++.+|+|.|+|.+.+.... ......|.|
T Consensus 191 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V 266 (282)
T 1qok_A 191 SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGS--G--TSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLEL 266 (282)
T ss_dssp SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--T--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecC--C--CEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEE
Confidence 8999999 5543310 122222111 1 1247999999999999999999875332 223345555
Q ss_pred ee
Q psy670 302 EA 303 (540)
Q Consensus 302 ~~ 303 (540)
..
T Consensus 267 ~~ 268 (282)
T 1qok_A 267 KR 268 (282)
T ss_dssp C-
T ss_pred ec
Confidence 43
No 304
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.69 E-value=2.2e-16 Score=133.93 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=107.9
Q ss_pred eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc--e--------EEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK--I--------KIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~--~--------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.+.+..|++++|.|.+.. |.+.|.|++++..+..... . +....... ..|.|.+++.+|+|.|.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~----~sL~I~~v~~~DsG~Y~C~ 78 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS----GSLTIYNLTSSDEDEYEME 78 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTT----CCEEECSCCGGGCEEEEEE
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCC----CeEEECCCChhhCceEEEE
Confidence 345668999999999854 7889999998875432111 0 01111111 2699999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~ 365 (540)
+.+..+ ...+.|.|...+ ..|.+..... . ..|.|.+.+.|.|.+.|+++|..+......
T Consensus 79 ~~n~~~--~~~~~L~V~~~~----~~p~i~~~~~-------~-~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~------- 137 (171)
T 1ccz_A 79 SPNITD--TMKFFLYVLEMV----SKPMIYWECS-------N-ATLTCEVLEGTDVELKLYQGKEHLRSLRQK------- 137 (171)
T ss_dssp CTTCCS--CEEEEEEEECCC----CCCEEEEETT-------T-TEEEEECSSCSSCEEEEEETTEEEEEESSS-------
T ss_pred EeCCCC--cEEEEEEEECcC----CCCEEEEecC-------C-cEEEEEeCCCCCcEEEEEECCEECcCCcce-------
Confidence 998877 566677776532 1344432221 1 279999999899999999999887643221
Q ss_pred CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
.|.+. ...|+|.|+|.|.|..+....+..|.
T Consensus 138 ------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 138 ------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp ------EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred ------EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence 34443 36789999999999999877766553
No 305
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.69 E-value=4.8e-16 Score=141.84 Aligned_cols=175 Identities=17% Similarity=0.267 Sum_probs=112.3
Q ss_pred CCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EEe---e---------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670 213 KPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KLV---K---------ESSKIKIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~l---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
.+....+.+|++++|.|.+.+. +.+.+.|++.. ... . ...++..... . ....|.|.+++.
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~ 83 (256)
T 3ux9_B 8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKS--G--TSASLAITGLQS 83 (256)
T ss_dssp CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE--T--TEEEEEECSCCG
T ss_pred cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEcc--C--CEEEEEECCCCh
Confidence 3445778899999999999876 77889999842 111 0 1122222211 1 124799999999
Q ss_pred CCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCC--------------CCCeEEeCCceEEeeCCCeEEEEEEEEccC
Q psy670 277 PDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEG--------------DPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~--------------~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p 339 (540)
+|+|.|.|.+.+..+. ......|.|...+.... ..+.+.. +....+.+|++++|.|.+.+.+
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~ 162 (256)
T 3ux9_B 84 EDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFT 162 (256)
T ss_dssp GGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSC
T ss_pred hhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCc
Confidence 9999999999986542 22345566654321100 0112333 3344588999999999999876
Q ss_pred --CCeEEEEEC--CEEc------c-----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 340 --MPEIVWFHE--GKEL------Q-----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 340 --~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
.+.+.|+++ +..+ . ...++... .++.....+|.|.+++.+|+|.|+|.|.|..
T Consensus 163 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 163 FSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTIS--RDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEE--EETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred ccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEE--ecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 789999986 3211 0 01133322 2222334479999999999999999999964
No 306
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.69 E-value=8.6e-16 Score=140.24 Aligned_cols=176 Identities=15% Similarity=0.269 Sum_probs=114.5
Q ss_pred CCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E--Eee--------------ccCceEEEEecCCCeEEEEEEEe
Q psy670 213 KPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K--LVK--------------ESSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~--~l~--------------~~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
.+....+.+|++++|.|.+.+. +.+.+.|++.. . .+. ...++.+..... .....|.|.
T Consensus 14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~ 91 (257)
T 3gkz_A 14 ESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTS--KNQVYLQLK 91 (257)
T ss_dssp EECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGG--GTEEEEEEC
T ss_pred CCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecC--CceEEEEEC
Confidence 3445567899999999999884 47789999832 1 111 011222222111 123479999
Q ss_pred CCCCCCcEEEEEEEEcCCCC----eeeeEEEEEeeccC-------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670 273 DPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAE-------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP 341 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~~-------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~ 341 (540)
+++.+|+|.|+|.+.+..+. ......|.|..... ....++.+...+....+.+|++++|.|.+.+.+.+
T Consensus 92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 171 (257)
T 3gkz_A 92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS 171 (257)
T ss_dssp SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence 99999999999999986221 23345566654310 00124566666777889999999999999998877
Q ss_pred -eEEEEEC--CEEccC------------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670 342 -EIVWFHE--GKELQQ------------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394 (540)
Q Consensus 342 -~i~W~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 394 (540)
.+.|++. +..+.. ..++.. ...+. ..+|.|.+++.+|+|.|.|.|.+..
T Consensus 172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~--~~~L~I~~v~~~D~G~Y~C~~~~~~ 235 (257)
T 3gkz_A 172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSG--SGSGT--SYSLTISSMEAEDAASYFCHQWSSF 235 (257)
T ss_dssp GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETT--EEEEEESSCCGGGCEEEEEEECSSS
T ss_pred eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEE--ecCCC--EEEEEECCCChHHCEEEEEEEccCC
Confidence 8999983 222110 122222 12222 3379999999999999999998854
No 307
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.69 E-value=1.3e-16 Score=135.25 Aligned_cols=157 Identities=11% Similarity=0.129 Sum_probs=105.2
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcce-----EEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT-----YLLRLEINNPTKDDGGNYRCNACNSI 186 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~ 186 (540)
+.+.+|++|+|.|.+ +.|.+.|.|+|++..+...............+. ...+|.|.+++.+|+|.|+|.+.+..
T Consensus 5 v~~~~G~~VtL~c~~-~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~ 83 (171)
T 1ccz_A 5 IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT 83 (171)
T ss_dssp EEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred EEEEcCCCEEEcCCC-CCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCC
Confidence 457789999999998 447889999998865421100000000000000 01279999999999999999998877
Q ss_pred ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
+ ...+.|.|..... .|.+..... . ..|.|.+.+.|.+.+.|++++..+......
T Consensus 84 ~--~~~~~L~V~~~~~----~p~i~~~~~-----~---~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~------------ 137 (171)
T 1ccz_A 84 D--TMKFFLYVLEMVS----KPMIYWECS-----N---ATLTCEVLEGTDVELKLYQGKEHLRSLRQK------------ 137 (171)
T ss_dssp S--CEEEEEEEECCCC----CCEEEEETT-----T---TEEEEECSSCSSCEEEEEETTEEEEEESSS------------
T ss_pred C--cEEEEEEEECcCC----CCEEEEecC-----C---cEEEEEeCCCCCcEEEEEECCEECcCCcce------------
Confidence 7 5667777775321 333322111 1 279999999899999999999887643321
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLN 298 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 298 (540)
.+.+.+ ..|.|.|+|.|.|..+.......
T Consensus 138 -~l~~~~--~~~~g~Y~C~a~N~~~~~~~~~~ 166 (171)
T 1ccz_A 138 -TMSYQW--TNLRAPFKCKAVNRVSQESEMEV 166 (171)
T ss_dssp -EEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred -EEEEec--cCCCceEEEEEEcccCcccceeE
Confidence 233333 67889999999999887655543
No 308
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.69 E-value=4.6e-16 Score=140.53 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=113.3
Q ss_pred CccccCCCeEEEEEEEeecC----CCceEEEeCC--Ee---ec---------CCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASP----MPDIIWYQGT--KV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p----~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
...+.+|++++|.|.+.+.| .+.+.|+|++ .. +. ...++.+.. .....+|.|.+++.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~ 84 (240)
T 1moe_A 10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-----SRTDFTLIIDPVEA 84 (240)
T ss_dssp EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCG
T ss_pred eEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-----cCCeEEEEEcCCCh
Confidence 35688999999999998887 7789999952 21 10 122333321 11234899999999
Q ss_pred CCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEE
Q psy670 173 DDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKL 247 (540)
Q Consensus 173 ~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~ 247 (540)
+|+|.|+|.+.+..+. ....+.|.|...+... .++.+...+....+.+|+.++|.|.+.+.| .+.+.|+++ +..
T Consensus 85 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~-~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~ 163 (240)
T 1moe_A 85 DDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGG-GGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQG 163 (240)
T ss_dssp GGCEEEEEEECSSSSCCBCCCEEEEECCCSCCC-CCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred hhCEEEEEEEccCCceeecCCEEEEEecCCCCC-CceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCC
Confidence 9999999999987554 3344566666432110 122233445566788999999999999876 468999995 222
Q ss_pred ee-----------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 248 VK-----------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 248 l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
+. ...++...... ......|.|.+++.+|+|.|+|.|.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 164 LEWIGRIDPANGNSKYVPKFQGKATITADT--SSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp CEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred cEEEEEEcccCCccccCccccccEEEEEcc--cCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 11 01122222211 112347999999999999999999853
No 309
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.69 E-value=8.3e-16 Score=140.18 Aligned_cols=175 Identities=15% Similarity=0.294 Sum_probs=114.2
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---e----------cCCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---I----------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 175 (540)
...+.+|++++|.|.+.+.|.+.+.|+|.. .. + ....++..... ......+|.|.+++.+|+
T Consensus 12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~Ds 88 (256)
T 3tf7_C 12 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFS---KSDSSFHLRKASVHRSDS 88 (256)
T ss_dssp EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEE---TTTTEEEEEESSCCGGGC
T ss_pred eEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEc---CCCCEEEEEECCCCcccC
Confidence 456889999999999988899999999832 11 1 01223332211 112234899999999999
Q ss_pred eEEEEEEEcCCce----eEEEEEEEEecCc-------------CCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe
Q psy670 176 GNYRCNACNSIGE----SNANIALNFQGGE-------------NGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE 238 (540)
Q Consensus 176 G~Y~C~~~~~~~~----~~~~~~l~v~~~~-------------~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 238 (540)
|.|+|.+.+..+. ....+.|.|.... .....++.+...+....+.+|+.++|.|.+.+. .+.
T Consensus 89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~ 167 (256)
T 3tf7_C 89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY 167 (256)
T ss_dssp SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE
T ss_pred EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE
Confidence 9999999987542 2234556666411 001125567777777788899999999999876 678
Q ss_pred EEEEeCC--EEe---ec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 239 VKWFKAD--KLV---KE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 239 v~W~~~~--~~l---~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
+.|++.. ..+ .. ..++.... .......|.|.+++.+|+|.|+|.+.|..|.
T Consensus 168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 168 MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATR---TTQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEEC---CSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEe---CCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 9999832 111 00 01111111 0112237999999999999999999987664
No 310
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.69 E-value=2.3e-13 Score=143.55 Aligned_cols=337 Identities=13% Similarity=0.104 Sum_probs=186.8
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCC-CeeEEEEEEccCcceeeeE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD-SGEYKVIAKNKNGEGSSTV 86 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~Y~C~~~~~~~~~~~~~ 86 (540)
+.|.+.|.|. +.+.|.|+|.++....+. .|.|..+...+ ++.|+|.+.+..|.....
T Consensus 96 v~c~~~g~P~------p~i~W~k~g~~~~~~~~~---------------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~- 153 (731)
T 2v5y_A 96 VYVKVNNGPL------GNPIWNISGDPTRTWNRA---------------ELAISTFWPNFYQVIFEVITSGHQGYLAID- 153 (731)
T ss_dssp EEEEETTCCC------CSEEEEECCCCCSSCEEE---------------EEEECCCTTSCEEEEEEEEECSSCCEEEEC-
T ss_pred EEEecCCCCc------cceeEEEeCCcCCceeEE---------------EEEEeecCCCceEEEEEEEecCCceEEEEe-
Confidence 4599999998 999999999887543222 33344332222 355666554444432211
Q ss_pred EEEEeecCCccccCCCCCCCCC-CCCccccCCCeEEEEEEEeecCCCceE-EE--eCCEeecCCCceEEEEeecCcceEE
Q psy670 87 NLNFSEEDGKLKVPGGKAPRFP-KKPTIHQDGDLLVMECVLEASPMPDII-WY--QGTKVIEDTGRIKMSKKSIGKDTYL 162 (540)
Q Consensus 87 ~l~v~~~~~~~~i~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (540)
.+.+.... ...+|.+. .....+.+|++++|.|.+.|.|.+.+. |+ ++|..+..... .........
T Consensus 154 ~v~~~~~~------~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~-----~~~~~~~~~ 222 (731)
T 2v5y_A 154 EVKVLGHP------CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI-----KVTSSRRFI 222 (731)
T ss_dssp CBEEESSC------CSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEE-----EECCSSEEE
T ss_pred eEEeeecc------cccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccce-----EEeccccce
Confidence 11111110 11122222 234578899999999999999999988 88 67776643211 111223334
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc---CC-C
Q psy670 163 LRLEINNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK---PR-P 237 (540)
Q Consensus 163 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~-~ 237 (540)
.+|.|.++...|+|.|+|.|.|..|. .+..+.|.|.. +|.+...+....+ ....+.|.|..... .+ .
T Consensus 223 ~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~-------~P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~ 294 (731)
T 2v5y_A 223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE-------PPVPIAPPQLASV-GATYLWIQLNANSINGDGPIV 294 (731)
T ss_dssp EEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEEC-------CCCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCC
T ss_pred EEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEec-------CCCCCCCcceecc-CCceEEEEeCCcccCCCCccE
Confidence 69999999999999999999999997 56667777775 3333333333333 35678888876432 11 1
Q ss_pred --eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE--cCCCCeeeeEEEEEeeccCCCCCCCe
Q psy670 238 --EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK--NEFGESNANLNLNIEAEAEPEGDPPT 313 (540)
Q Consensus 238 --~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~--~~~~~~~~~~~l~v~~~~~~~~~~p~ 313 (540)
.|.|...+... ........ ..+.|.++...+...|+|.|. |..|....+..+.+.........+|.
T Consensus 295 ~Y~v~~~~~~~~~------~~~~~~~~----~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~ 364 (731)
T 2v5y_A 295 AREVEYCTASGSW------NDRQPVDS----TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPR 364 (731)
T ss_dssp EEEEEEEESSSSC------EEEEECCS----SEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCE
T ss_pred EEEEEEEECCCCc------eEEeccCc----ceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCc
Confidence 46676543211 11111111 268899999999999999999 88876543333333322211111232
Q ss_pred EEeCCceEEeeCCCeEEEEEEEEcc-----C--CCeEEEEECCEEccCCCceEE---EEEecCCeeEEEEEEcCCCCCCC
Q psy670 314 FIEKPKIRSEQGGKLVVMECKVKAK-----P--MPEIVWFHEGKELQQTDRISW---NVTLKGDKYHIRLEVKDPRKEDT 383 (540)
Q Consensus 314 ~~~~~~~~~~~~g~~v~l~C~~~~~-----p--~~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~ 383 (540)
.+. ........+.|....... + ...|.|...+. ...... ....... ...+.|.++.....
T Consensus 365 ~~~----~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~----~~~~~~~~~~~~~~~~--~~~~~i~~L~p~t~ 434 (731)
T 2v5y_A 365 KLE----VVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG----GQEQVREEVSWDTENS--HPQHTITNLSPYTN 434 (731)
T ss_dssp EEE----EEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESS----SSEEEEEEEECCSSCS--SCEEEECSCCSSCE
T ss_pred eeE----EEeccCCeEEEEEECCCcccccceeeeEEEEEEEccC----CCCccceeEEEEecCC--cceEEECCCCCCCE
Confidence 111 112234456665554211 0 11344433221 000000 0000111 11678888888777
Q ss_pred eeEEEEEEcCCeeeEEEEEEEEE
Q psy670 384 GLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 384 G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
..|+..|.|..|... +..+.+.
T Consensus 435 Y~~~V~A~n~~G~s~-S~~~~~~ 456 (731)
T 2v5y_A 435 VSVKLILMNPEGRKE-SQELIVQ 456 (731)
T ss_dssp EEEEEEEECSSCEEE-CCCEEEE
T ss_pred EEEEEEEEcCCCCCC-CceEEEE
Confidence 778888999988753 4444443
No 311
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.68 E-value=5.6e-16 Score=139.92 Aligned_cols=182 Identities=16% Similarity=0.259 Sum_probs=115.6
Q ss_pred eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--------------EEeec---cCceEEEEecCCCeEEEEEEEe
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--------------KLVKE---SSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--------------~~l~~---~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+...+..+.+.+|+++.|.|.+.+ +.+.+.|++.. ..... ..++.+... ......|.|.
T Consensus 5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~sL~I~ 80 (240)
T 3q5y_A 5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF---DDYHSEMNMS 80 (240)
T ss_dssp CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC---TTSCEEEEEC
T ss_pred cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC---CCCEEEEEEC
Confidence 344566677889999999999876 77799999821 11111 123332221 1123479999
Q ss_pred CCCCCCcEEEEEEEEcCC---CCeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEE
Q psy670 273 DPIGPDSGTYRCNVKNEF---GESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWF 346 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~ 346 (540)
+++.+|+|.|.|.+.+.. ........+.|...... ..+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|+
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~ 159 (240)
T 3q5y_A 81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRN-VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW 159 (240)
T ss_dssp SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred cCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccC-CCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEE
Confidence 999999999999998321 22233445666531111 1144443 3344444556899999999998 5666 78999
Q ss_pred ECCEEccCCCceE--EEEEecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCee
Q psy670 347 HEGKELQQTDRIS--WNVTLKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHGE 396 (540)
Q Consensus 347 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~ 396 (540)
++|..+....... .....++. ...+.|.|.....+| .|.|+|.|.|....
T Consensus 160 ~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 160 VNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp ETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred ECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 9999886543211 01111221 123468999888888 67999999997654
No 312
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.68 E-value=9.2e-18 Score=150.98 Aligned_cols=172 Identities=15% Similarity=0.213 Sum_probs=94.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Eee---c---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KVI---E---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|++ ..+ . ...++... .....++|.|.+++.+|+|
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G 106 (233)
T 3bqu_C 32 SLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSS-----GYGTDFVFTIENMLSEDVA 106 (233)
T ss_dssp BC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCC-----EEEEEEEEC-----CCCCS
T ss_pred eEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEee-----ccCCEEEEEECCCCHHHCE
Confidence 346789999999999988877889999853 111 0 01122111 1233458999999999999
Q ss_pred EEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEEeeccCc
Q psy670 177 NYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKLVKESSK 253 (540)
Q Consensus 177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~l~~~~~ 253 (540)
.|.|.+.+..+.. .....|.|.... .+|.+...+......+|+.++|.|.+.+. |.+ .+.|+++|..+.....
T Consensus 107 ~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 182 (233)
T 3bqu_C 107 DYYCLQSDNLPYTFGGGTNLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 182 (233)
T ss_dssp EEEEEECSSSSCCBCCCCBC---CCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred EEEEEEecCCceeecCCEEEEEeCCC----CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence 9999998875432 222344554311 24555443332223369999999999884 544 7999999987755411
Q ss_pred eEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 254 IKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 254 ~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
... ......+ ...+.|.|..+..+|+|.|+|.|.|...
T Consensus 183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 111 1111222 2345788999888999999999998744
No 313
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.68 E-value=1.8e-15 Score=137.15 Aligned_cols=177 Identities=16% Similarity=0.313 Sum_probs=112.7
Q ss_pred ccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeCC--EE---eec---------cCceEEEEecCCCeEEEEEEE
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~~l~i 271 (540)
...+..+.+.+|++++|.|.+.+.+ .+.+.|+++. .. +.. ..++..... .....|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I 80 (247)
T 1svz_A 5 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS----GTDFTLKI 80 (247)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEE
T ss_pred EecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccC----CCEEEEEE
Confidence 3446677888999999999998877 6789999842 21 110 122222211 11247999
Q ss_pred eCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCC------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccC--CCe
Q psy670 272 TDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEP------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP--MPE 342 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~ 342 (540)
.+++.+|+|.|.|.+.+..+. ......|.|...+.. ...++..+..+....+.+|+.++|.|.+.+.+ .+.
T Consensus 81 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 160 (247)
T 1svz_A 81 SRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYS 160 (247)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSC
T ss_pred CCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcE
Confidence 999999999999999987543 223355666543210 00122233333334588999999999999875 568
Q ss_pred EEEEECC--EEc------c-----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 343 IVWFHEG--KEL------Q-----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 343 i~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
+.|++++ ..+ . ...++.... +......+|.|.+++.+|+|.|.|.|.|.
T Consensus 161 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 161 MHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSL--DTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEE--EGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEE--ecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 9999963 111 0 022332221 11222348999999999999999999985
No 314
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.68 E-value=6e-16 Score=138.68 Aligned_cols=186 Identities=12% Similarity=0.203 Sum_probs=114.0
Q ss_pred ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---ee-------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670 215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VK-------------ESSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~-------------~~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
....+.+|++++|.|.+.+.+ ...+.|++.. .. +. ...++.+.... ......|.|.++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v 85 (232)
T 1dn0_B 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT--SKNQFSLKLSSV 85 (232)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeC--CCCEEEEEECCC
Confidence 345678899999999998764 5689999842 21 10 01233332221 112347999999
Q ss_pred CCCCcEEEEEEEEcCC--CC----eeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCC-CeEEEEEEEEcc-CCC-eEE
Q psy670 275 IGPDSGTYRCNVKNEF--GE----SNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGG-KLVVMECKVKAK-PMP-EIV 344 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~--~~----~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g-~~v~l~C~~~~~-p~~-~i~ 344 (540)
+.+|+|.|.|.+.+.. +. ......|.|...+ ..+|.+.. .+. ..+..| +.++|.|.+.+. |.+ .+.
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~ 161 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS---ASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFS 161 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC---CBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCC---CCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEE
Confidence 9999999999998422 11 2234566665421 12455443 222 234467 999999999985 776 999
Q ss_pred EEE-CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCC--CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 345 WFH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRK--EDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 345 W~~-~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
|++ +|..+.. .........++. ...+.|.|..... +|.|.|+|.|.|..+.......+.|..
T Consensus 162 W~~~~g~~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 162 WKYKNNSDISS-TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA 227 (232)
T ss_dssp EEETTSCEECC-EEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred EEcCCCCceee-EEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence 999 8887754 100000011221 1234789988887 789999999999998876666665543
No 315
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.68 E-value=5.4e-17 Score=144.64 Aligned_cols=183 Identities=15% Similarity=0.230 Sum_probs=118.0
Q ss_pred CceeecCCCCeEEEEEEecc-cCCC----eEEEEeCCEEeec-------------cCceEEEEec-CCCeEEEEEEEeCC
Q psy670 214 PRIIPNESGTLIQMKCKCSA-KPRP----EVKWFKADKLVKE-------------SSKIKIIVNE-QDDTYEIICEITDP 274 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~-~p~~----~v~W~~~~~~l~~-------------~~~~~~~~~~-~~~~~~~~l~i~~~ 274 (540)
+..+.+.+|+++.|.|.+.+ .+.+ .+.|++++..... ..+..+.... ........|.|.++
T Consensus 6 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v 85 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGL 85 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCS
T ss_pred CCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccC
Confidence 34556778999999999954 4444 3999998642211 1122221100 00112247999999
Q ss_pred CCCCcEEEEEEEEcCC-CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeE-EEEEEEE-ccCCCeEEEEECCEE
Q psy670 275 IGPDSGTYRCNVKNEF-GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV-VMECKVK-AKPMPEIVWFHEGKE 351 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v-~l~C~~~-~~p~~~i~W~~~~~~ 351 (540)
+.+|+|.|+|.+.+.. +.....+.|.|.. +|.+...+.... ..|+.+ .|.|.+. +.|.+.|.|++++..
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~-------~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~ 157 (221)
T 3eow_R 86 RVEDEGSYTCLFVTFPQGSRSVDIWLRVLA-------KPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGG 157 (221)
T ss_dssp SCCCCSCBEEEEEESSSCSCEEECCCCCCC-------CCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSC
T ss_pred ChHHCeEEEEEEEeCCCCceEEEEEEEEEE-------CCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCCC
Confidence 9999999999999865 6666666666654 555543322222 568888 5999988 789999999987543
Q ss_pred ccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
....... .....+.....+.|.|..+..+|.|.|+|.|.|..+.....+.|..
T Consensus 158 ~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~ 210 (221)
T 3eow_R 158 MPQTSQV-PGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210 (221)
T ss_dssp CCCCEEE-CCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECC
T ss_pred CCcccee-ecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEE
Confidence 3221110 0001111233458999999999999999999999877665555543
No 316
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.68 E-value=2.5e-16 Score=142.70 Aligned_cols=183 Identities=15% Similarity=0.234 Sum_probs=116.0
Q ss_pred eeccCCceeecCCCCeEEEEEEecccCCCeEEEEe--------------CCEEeecc----CceEEEEecCCCeEEEEEE
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--------------ADKLVKES----SKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--------------~~~~l~~~----~~~~~~~~~~~~~~~~~l~ 270 (540)
.+...+..+.+.+|++++|.| ..+.+.+.+.|++ ++...... .++.+... ......|.
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~sL~ 79 (245)
T 4ei6_B 4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP---DGSYFTLK 79 (245)
T ss_dssp CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC---TTSCEEEE
T ss_pred ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec---cCceEEEE
Confidence 344556677888999999999 6667888999998 22211111 23322211 12235899
Q ss_pred EeCCCCCCcEEEEEEEEcCC----CCeeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEc-cCCC-eE
Q psy670 271 ITDPIGPDSGTYRCNVKNEF----GESNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKA-KPMP-EI 343 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i 343 (540)
|.+++.+|+|.|.|.+.+.. ........+.|...... ..+|.+ +..+....+..|+.++|.|.+.+ .|.+ .+
T Consensus 80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v 158 (245)
T 4ei6_B 80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 158 (245)
T ss_dssp ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCC-CCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEE
Confidence 99999999999999999532 22334455666531111 114443 33344444556999999999998 4545 89
Q ss_pred EEEECCEEccCCCceEEEEE------ecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCee
Q psy670 344 VWFHEGKELQQTDRISWNVT------LKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHGE 396 (540)
Q Consensus 344 ~W~~~~~~~~~~~~~~~~~~------~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~ 396 (540)
.|+++|..+........... .++. ...+.|.|.....+| .|.|+|.|.|....
T Consensus 159 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 159 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 99999998865322110000 0121 122468888887778 99999999997644
No 317
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.68 E-value=9.3e-18 Score=150.97 Aligned_cols=180 Identities=16% Similarity=0.288 Sum_probs=97.4
Q ss_pred eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEe---ec---------cCceEEEEecCCCeEEEEEEEeCC
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLV---KE---------SSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l---~~---------~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
.+...+....+.+|++++|.|.+.+.|.+.+.|++++ ..+ .. ..++.. ........|.|.++
T Consensus 25 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~L~I~~v 100 (233)
T 3bqu_C 25 TVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSS----SGYGTDFVFTIENM 100 (233)
T ss_dssp CEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCC----CEEEEEEEEC----
T ss_pred eEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEe----eccCCEEEEEECCC
Confidence 3444466677889999999999988877789999853 111 00 011110 01122347999999
Q ss_pred CCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECCEE
Q psy670 275 IGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEGKE 351 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~ 351 (540)
+.+|+|.|.|.+.+..+.. .....+.|.... .+|.+...+.......|+.++|.|.+.+. |.+ .+.|+++|..
T Consensus 101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 176 (233)
T 3bqu_C 101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE 176 (233)
T ss_dssp -CCCCSEEEEEECSSSSCCBCCCCBC---CCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC---
T ss_pred CHHHCEEEEEEEecCCceeecCCEEEEEeCCC----CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCee
Confidence 9999999999999875532 222344553321 14555443322223469999999999985 443 7999999988
Q ss_pred ccCCCceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 352 LQQTDRISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 352 ~~~~~~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+............ ++. ...+.|.|.....+|+|.|+|.|.|....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 177 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp --CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 7654111111111 111 23457999998889999999999997654
No 318
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.68 E-value=5.6e-17 Score=145.27 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=115.2
Q ss_pred cCCceeecCCCCeEEEEEEecc-cCC--CeEEEEeCCEEe-eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670 212 EKPRIIPNESGTLIQMKCKCSA-KPR--PEVKWFKADKLV-KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287 (540)
Q Consensus 212 ~~~~~~~~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~l-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 287 (540)
..+....+..|+.++|.|.+.+ +|. ..+.|+++|..+ ...........+......+.|.|.+++.+|.|.|+|.+.
T Consensus 18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~ 97 (231)
T 2w59_A 18 IPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ 97 (231)
T ss_dssp ECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred eCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence 3455556678999999999988 464 499999998876 322221111111122234579999999999999999999
Q ss_pred cCCCCeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEE--EE
Q psy670 288 NEFGESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISW--NV 362 (540)
Q Consensus 288 ~~~~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~--~~ 362 (540)
+..+.. .+.+.|..... ...+|.+.. .+....+ .+..++|.|.+.|. | .+.|.|+++|..+........ ..
T Consensus 98 ~~~~~~--~~~~~v~~~~~-~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~ 173 (231)
T 2w59_A 98 HEELPL--PLSKSVYRNTG-PTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLP 173 (231)
T ss_dssp CTTCSS--CEEEEECCCCS-CCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEE
T ss_pred cCCCCC--ceEEEEecCCC-CCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCcccc
Confidence 976543 23334432100 112444432 2221112 35679999999985 4 368999999999876542111 11
Q ss_pred E--------ec-CC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 363 T--------LK-GD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 363 ~--------~~-~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
. .+ +. ...+.|.|.....+|.|.|+|.|.|....
T Consensus 174 ~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 174 EERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp CCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred CcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 1 12 22 23457889888888899999999998754
No 319
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.68 E-value=6.5e-16 Score=117.65 Aligned_cols=95 Identities=25% Similarity=0.505 Sum_probs=81.4
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
||.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+......++.....++ ..+|.|.+++.+|+|.|+|.|
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD--LTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSS--EEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccc--eEEEEEcCCCccCCEEEEEEE
Confidence 677777788889999999999999999999999999999999876554444444443 338999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|+.
T Consensus 83 ~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 83 GNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCEEEEEEEEEEEE
Confidence 99999999999998874
No 320
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.67 E-value=4.4e-16 Score=141.67 Aligned_cols=184 Identities=15% Similarity=0.241 Sum_probs=115.3
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--E---ee--------------cCCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--K---VI--------------EDTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~---~~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+. +...+.|||.. . .+ ....++.+..+. ....++|.|.+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (253)
T 3liz_H 9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDN---AKNTLFLQMSS 85 (253)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEG---GGTEEEEEECS
T ss_pred CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC---CCCEEEEEECC
Confidence 4568899999999999763 35689999832 1 11 011344443322 12345799999
Q ss_pred CCCCCCeEEEEEEEcCC----ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEe
Q psy670 170 PTKDDGGNYRCNACNSI----GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFK 243 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~ 243 (540)
++.+|+|.|.|.+.+.. ......+.|.|.... ..+|.+...+....+..|+.++|.|.+.+ +|.+ .+.|++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 162 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 162 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC---CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC---CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence 99999999999998752 222334566665211 12555543333444567999999999988 7766 899999
Q ss_pred CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
++..+........ .........+.|.|.....+| |.|+|.+.|..+.......+.+.
T Consensus 163 ~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 163 GSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp GTBCTTEEECCCE-EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCeecceEeCCcc-ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 8864321110001 111112223579999999999 99999999987766555555443
No 321
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.67 E-value=1e-15 Score=141.29 Aligned_cols=172 Identities=15% Similarity=0.243 Sum_probs=110.8
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCE-----eec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTK-----VIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|++. .+. ...++.... .....+|.|.+++.+|+|
T Consensus 21 ~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG 95 (276)
T 3auv_A 21 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-----SGTDFTLTISSLQPEDFA 95 (276)
T ss_dssp EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec-----cCCeEEEEEccCChhhCE
Confidence 3568899999999999888888999998542 111 122333321 112348999999999999
Q ss_pred EEEEEEEcCCce-eEEEEEEEEecCcCC-------CCCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEEEeCC-
Q psy670 177 NYRCNACNSIGE-SNANIALNFQGGENG-------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD- 245 (540)
Q Consensus 177 ~Y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~- 245 (540)
.|.|.+.+..+. ......|.|...+.. ...++.....+....+.+|+.++|.|.+.+.+ .+.+.|++++
T Consensus 96 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~ 175 (276)
T 3auv_A 96 TYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAP 175 (276)
T ss_dssp EEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECT
T ss_pred EEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCC
Confidence 999999987543 223345666542210 00012223334566788999999999999866 5889999963
Q ss_pred -EEe---e--------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 246 -KLV---K--------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 246 -~~l---~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
..+ . ...++.+.... ......|.|.+++.+|+|.|+|.+.|.
T Consensus 176 g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 176 GKCLEWVAGITPAGGYTYYADSVKGRFTISADT--SKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp TCCEEEEEEECGGGCCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCcEEEEEEeccCCccccccccCCcEEEEecC--CCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 211 0 01222222211 112247999999999999999999997
No 322
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.67 E-value=5.9e-17 Score=145.05 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=110.1
Q ss_pred eEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceee-cCCCCeEEEEEEecccC----CCeEEEEeCCEEeec
Q psy670 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP-NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKE 250 (540)
Q Consensus 176 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~ 250 (540)
|.|.|.+.+..+....... +. .+..++..+.... +..|+.+.|.|.+.+++ ...|+|+++|..+..
T Consensus 1 ~~~~~~~~~~~~~c~~~~~--~~-------~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~ 71 (240)
T 4acp_A 1 GTKSCDKTHTCPPCPAPEL--LG-------GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN 71 (240)
T ss_dssp -------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECC
T ss_pred CceeeeeeecCCCCCcccc--CC-------CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCC
Confidence 7899999886653111100 00 1223334444444 56799999999999853 347999999998854
Q ss_pred cCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeE
Q psy670 251 SSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV 329 (540)
Q Consensus 251 ~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v 329 (540)
......... +......+.|.|.....+|.|.|+|.+.+..+.......+.... ....+|.+...+.......|+.+
T Consensus 72 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~---~~~~~P~V~v~~~~~~~~~g~~~ 148 (240)
T 4acp_A 72 AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK---GQPREPQVYTLPPSRDELTKNQV 148 (240)
T ss_dssp CEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC---SCCBCCEEEEECCCGGGGGSSEE
T ss_pred ceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC---CCCCCCEEEEECCChHHhcCCce
Confidence 321111111 12222335677777666788999999999866432222222110 01125555444332222348999
Q ss_pred EEEEEEEc-cCCC-eEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 330 VMECKVKA-KPMP-EIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 330 ~l~C~~~~-~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
+|.|.+.+ +|.+ .+.|+++|..+............++.. ..+.|.+......+.|.|+|+|.+..-
T Consensus 149 ~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 149 SLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 99999998 4554 799999999875321111111122222 234677776666678999999999764
No 323
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.67 E-value=1.7e-15 Score=138.66 Aligned_cols=181 Identities=15% Similarity=0.275 Sum_probs=116.6
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccC------CCeEEEEeC--CEE---eec---------cCceEEEEecCCCeEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP------RPEVKWFKA--DKL---VKE---------SSKIKIIVNEQDDTYE 266 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p------~~~v~W~~~--~~~---l~~---------~~~~~~~~~~~~~~~~ 266 (540)
.+.+...+..+.+.+|++++|.|.+.+.+ .+.+.|++. +.. +.. ..++..... ...
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~----~~~ 80 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGS----GTD 80 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE----TTE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecC----CCE
Confidence 44555667778888999999999998876 578999984 221 110 123322211 112
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccC------------CCCCCCeEEeCCceEEeeCCCeEEEEE
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAE------------PEGDPPTFIEKPKIRSEQGGKLVVMEC 333 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~------------~~~~~p~~~~~~~~~~~~~g~~v~l~C 333 (540)
..|.|.+++.+|+|.|.|.+.+..+. ......|.|...+. ....++..+..+....+.+|+.++|.|
T Consensus 81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C 160 (264)
T 2gjj_A 81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISC 160 (264)
T ss_dssp EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEE
T ss_pred EEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEE
Confidence 47999999999999999999987542 22335666654320 000012222223334688999999999
Q ss_pred EEEccCC--CeEEEEECC--EE---cc----C----------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670 334 KVKAKPM--PEIVWFHEG--KE---LQ----Q----------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392 (540)
Q Consensus 334 ~~~~~p~--~~i~W~~~~--~~---~~----~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 392 (540)
.+.+.+. +.+.|+++. .. +. . ..++.+.. +......+|.|.+++.+|+|.|.|.|.|
T Consensus 161 ~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 238 (264)
T 2gjj_A 161 KASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTV--DTSSSTAFMQLNSLTSEDSADYYCVRSG 238 (264)
T ss_dssp EEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEE--cCCCCEEEEEECcCCcccCEEEEEEEec
Confidence 9998764 799999863 21 10 0 12222222 1222245899999999999999999999
Q ss_pred C
Q psy670 393 F 393 (540)
Q Consensus 393 ~ 393 (540)
.
T Consensus 239 ~ 239 (264)
T 2gjj_A 239 N 239 (264)
T ss_dssp S
T ss_pred C
Confidence 5
No 324
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.67 E-value=6.7e-17 Score=142.26 Aligned_cols=173 Identities=14% Similarity=0.229 Sum_probs=102.1
Q ss_pred CCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 220 ESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 220 ~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
.+|+.+.|.|.+.+.+ ...|.|++++..+........ .....+.. ...|.|.....+|+|.|+|.+.|..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~-~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~ 94 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCC-EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCc-eeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence 6899999999998864 348999999987754321100 11112222 1234433333345999999999987754
Q ss_pred eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCe-eE
Q psy670 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDK-YH 370 (540)
Q Consensus 294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (540)
.....+.+. .....+|.+...+.......|..+.|.|.+.|. |. +.|.|+++|..+............++.. ..
T Consensus 95 ~~~~~v~~~---~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~ 171 (207)
T 1l6x_A 95 PIEKTISKA---KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY 171 (207)
T ss_dssp CEEEEECCC---CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEE
T ss_pred ceEEEeccC---CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEE
Confidence 333223210 001125554433222112246679999999985 54 4899999999875322111111222221 23
Q ss_pred EEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 371 IRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 371 ~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+.|.|.....+|.|.|+|.|.|....
T Consensus 172 s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 172 SKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 35677766667899999999998643
No 325
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.67 E-value=6.9e-16 Score=140.61 Aligned_cols=174 Identities=14% Similarity=0.254 Sum_probs=111.7
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. ...++.+..+. .....+|.|.+
T Consensus 15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 91 (261)
T 2xqy_G 15 AELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDK---SSSTVYIQLSS 91 (261)
T ss_dssp EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG---GGTEEEEEECS
T ss_pred CEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecC---CCCEEEEEEcC
Confidence 45688999999999998776 5789999853 2110 02344333221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCc-e--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670 170 PTKDDGGNYRCNACNSIG-E--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA 244 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~-~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~ 244 (540)
++.+|+|.|.|.+.+..+ . ....+.|.|..... .+|.+...+....+..|+.++|.|.+.+ +|.+ .|.|+++
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~ 168 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT---TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 168 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC---BCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCC---CCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecC
Confidence 999999999999998643 1 12335677764211 2444433222234567999999999988 4766 9999999
Q ss_pred CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
+..+......... ........+.|.|.....+| |.|+|.+.|....
T Consensus 169 g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 169 SLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp TCCTTEEECCCEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred CCcCceEecCcee-cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 8764221111111 11112234579999988888 9999999996543
No 326
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=144.83 Aligned_cols=182 Identities=14% Similarity=0.220 Sum_probs=107.5
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE---eeccC--------------ceEEEEecCCCeEEEE
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL---VKESS--------------KIKIIVNEQDDTYEII 268 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---l~~~~--------------~~~~~~~~~~~~~~~~ 268 (540)
|.+...+..+.+.+|++++|.|.+.+.+.+.+.|++. +.. +.... +...... .......
T Consensus 3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~ 80 (259)
T 3omz_A 3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYG--STRKNLR 80 (259)
T ss_dssp --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEEC--C--CCCE
T ss_pred cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeec--CCCCeEE
Confidence 4455566677888999999999999988889999982 111 10000 1111111 1112236
Q ss_pred EEEeCCCCCCcEEEEEEEEcCCC---CeeeeEEEEEeeccCCCC----------CCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670 269 CEITDPIGPDSGTYRCNVKNEFG---ESNANLNLNIEAEAEPEG----------DPPTFIEKPKIRSEQGGKLVVMECKV 335 (540)
Q Consensus 269 l~i~~~~~~d~g~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~----------~~p~~~~~~~~~~~~~g~~v~l~C~~ 335 (540)
|.|.+++.+|+|.|.|.+.+..+ .......|.|........ ..+.+...+....+.+|++++|.|.+
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 99999999999999999998765 233445566654321110 13556666777889999999999999
Q ss_pred Ecc-CCCeEEEEECCE--Ecc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 336 KAK-PMPEIVWFHEGK--ELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 336 ~~~-p~~~i~W~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
.+. +.+.+.|++.+. .+. ...++.. ..+.......|.|.+++.+|+|.|.|.+.+.
T Consensus 161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSV--NFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEE--CCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEE--EEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 875 788999998431 110 0112211 1111111236999999999999999999853
No 327
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.67 E-value=4.1e-16 Score=133.40 Aligned_cols=152 Identities=13% Similarity=0.219 Sum_probs=104.7
Q ss_pred CCccccCCCeEEEEEEEee-cCCCceEEEeC-CEeec---CC-----------CceEEEEeecCcceEEEEEEEcCCCCC
Q psy670 110 KPTIHQDGDLLVMECVLEA-SPMPDIIWYQG-TKVIE---DT-----------GRIKMSKKSIGKDTYLLRLEINNPTKD 173 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~-~~~~~---~~-----------~~~~~~~~~~~~~~~~~~L~i~~~~~~ 173 (540)
.++.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+. .. .+..+. .. ..+|.|.+++.+
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~-----~~--~~sL~I~~v~~~ 79 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD-----KT--NGALRIYNVSKE 79 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC-----TT--TCCEEECSCCGG
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe-----CC--CccEEEcCCCHH
Confidence 4567889999999999843 34678999994 32221 11 122220 11 127999999999
Q ss_pred CCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccC
Q psy670 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESS 252 (540)
Q Consensus 174 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~ 252 (540)
|+|.|+|.+.+.. .....+.|.|..... .|.+.. .+..+.|.|.+ .+ |.+.+.|++++..+....
T Consensus 80 D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~----~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~~ 145 (180)
T 2dru_A 80 DRGDYYMRMLHET-EDQWKITMEVYEMVS----KPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRSLR 145 (180)
T ss_dssp GCEEEEEEEESSS-EEEEEEEEEEECCCC----CCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEEES
T ss_pred HCeEEEEEEEcCC-eEEEEEEEEEECCCC----CCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcCCC
Confidence 9999999998776 566777888875221 333321 23569999999 55 899999999998875111
Q ss_pred ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670 253 KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL 297 (540)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 297 (540)
. .+|.+.. .+|+|.|+|.|.|..+......
T Consensus 146 ---------~----~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~ 175 (180)
T 2dru_A 146 ---------Q----KTMSYQW--TNLRAPFKCKAVNRVSQESEME 175 (180)
T ss_dssp ---------S----SEEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred ---------C----CEEEEEE--hhcCccEEEEEecCcCccccce
Confidence 1 1455533 6799999999999987655443
No 328
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.67 E-value=1e-15 Score=136.24 Aligned_cols=174 Identities=14% Similarity=0.203 Sum_probs=112.3
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee------c-------------CCCceEEEEeecCcceEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI------E-------------DTGRIKMSKKSIGKDTYLLRLEI 167 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~------~-------------~~~~~~~~~~~~~~~~~~~~L~i 167 (540)
...+.+|++++|.|.+.+.+ ...+.|||.. ... . ...++.+..+. ....++|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I 85 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDD---SKNTAFLQM 85 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEG---GGTEEEEEE
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecC---CCCEEEEEE
Confidence 35688999999999997643 5689999832 111 0 11344443321 122448999
Q ss_pred cCCCCCCCeEEEEEEEcCC--ceeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecc-cCC--CeEEE
Q psy670 168 NNPTKDDGGNYRCNACNSI--GESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSA-KPR--PEVKW 241 (540)
Q Consensus 168 ~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~--~~v~W 241 (540)
.+++.+|+|.|.|.+.+.. ......+.|.|..... .+|.+. ..+... .+|+.++|.|.+.+ .|. +.+.|
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~---~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W 160 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP---TSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTW 160 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC---BCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEE
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCC---CCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEE
Confidence 9999999999999998864 2223344566653211 244443 222222 68999999999988 776 48999
Q ss_pred EeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 242 FKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 242 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
++++..+......... .........+.|.|.....+|.|.|+|.|.+..+.
T Consensus 161 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 161 SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp SCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred EECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 9998766321111111 01112223347999999999999999999998654
No 329
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.67 E-value=5.4e-16 Score=119.61 Aligned_cols=94 Identities=27% Similarity=0.528 Sum_probs=82.2
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.+|.|+..+....+.+|+.+.|.|.+.|.|.|.|.|+++|..+..+.++.+.. ++. ..+|.|.+++.+|+|.|+|.
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~--~~~--~~~L~I~~v~~~D~G~Y~C~ 87 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA--EHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCE--ETT--EEEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEee--cCc--eEEEEEecCChhhCEEEEEE
Confidence 37888888888999999999999999999999999999999998877665432 232 23899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.|..|....++.|.|..
T Consensus 88 a~N~~G~~~~~~~l~V~~ 105 (107)
T 3knb_B 88 ARNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCEEEEEEEEEEEc
Confidence 999999999999999876
No 330
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.67 E-value=7.6e-16 Score=139.12 Aligned_cols=172 Identities=16% Similarity=0.234 Sum_probs=109.3
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 176 (540)
...+.+|++++|.|.+.+.|.+.+.|+|+. .. +. ...++.+.. .....+|.|.+++.+|+|
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G 84 (242)
T 2znx_A 10 TLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETEDFG 84 (242)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec-----CCCEEEEEECCCChHHCE
Confidence 356889999999999988888899999942 11 10 122333321 112348999999999999
Q ss_pred EEEEEEEcCCcee-EEEEEEEEecCcCCC------CCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEEEeC--C
Q psy670 177 NYRCNACNSIGES-NANIALNFQGGENGA------GFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--D 245 (540)
Q Consensus 177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~ 245 (540)
.|.|.+.+..+.. ...+.|.|...+... ..++.....+....+.+|++++|.|.+.+.| .+.+.|+++ +
T Consensus 85 ~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~ 164 (242)
T 2znx_A 85 MYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPG 164 (242)
T ss_dssp EEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred EEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCC
Confidence 9999999875432 234566666422100 0011122222334578999999999998865 478999994 2
Q ss_pred EEee----------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 246 KLVK----------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 246 ~~l~----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
..+. ...++.+.... ......|.|.+++.+|+|.|+|.+.+.
T Consensus 165 ~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 165 NRLEYMGYVSYSGSTYYNPSLKSRISITRDT--SKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp SCEEEEEEECTTSCEEECGGGTTCEEEEEET--TTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred CCcEEEEEEecCCccccCccccCcEEEEecC--CCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 2221 01222222211 112347999999999999999999873
No 331
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.66 E-value=8.8e-17 Score=144.42 Aligned_cols=175 Identities=14% Similarity=0.157 Sum_probs=110.6
Q ss_pred cCCCCeEEEEEEeccc---CCC-eEEEEeCCEEeeccCceE-EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 219 NESGTLIQMKCKCSAK---PRP-EVKWFKADKLVKESSKIK-IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~~---p~~-~v~W~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
+.+|+.++|.|.+.+. |.+ .|.|++++..+....... ...........+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 6789999999999886 765 899999987654321100 00111112334579999999999999999999987754
Q ss_pred eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCC-CeEEEEECCEEccCCCceEEEEEecCCe-eE
Q psy670 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPM-PEIVWFHEGKELQQTDRISWNVTLKGDK-YH 370 (540)
Q Consensus 294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (540)
.....+.. .. ....+|.+...+.......|+.++|.|.+.| .|. ..|.|+++|..+............++.. ..
T Consensus 109 ~~~~~v~~--~~-~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~ 185 (239)
T 1i1c_A 109 PIEKSISK--PE-GTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY 185 (239)
T ss_dssp CEEEEECC--CS-SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE
T ss_pred CcEEEEec--CC-CCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEE
Confidence 33222221 00 1122555544332222235789999999998 454 4899999999885422111111222222 23
Q ss_pred EEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 371 IRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 371 ~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
+.|.|.....+|.|.|+|.|.|....
T Consensus 186 s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 186 SKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEChhhcCCCCEEEEEEECCCCC
Confidence 45677665556799999999998744
No 332
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.66 E-value=9.7e-17 Score=144.16 Aligned_cols=175 Identities=12% Similarity=0.155 Sum_probs=110.4
Q ss_pred ccCCCeEEEEEEEeec---CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 114 HQDGDLLVMECVLEAS---PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~---p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
+.+|++++|.|.+.+. |.+ .|.|+|++..+.............+.....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 6799999999999876 766 899999886654321100011111222344689999999999999999999987753
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDT--Y 265 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~--~ 265 (540)
.....+... .....+|.+...+.......|+.+.|.|.+.+ +|. ..|.|+++|..+.......... ..++. .
T Consensus 109 ~~~~~v~~~---~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~-~~dgt~~~ 184 (239)
T 1i1c_A 109 PIEKSISKP---EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTM-DTDGSYFL 184 (239)
T ss_dssp CEEEEECCC---SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEE-CTTSCEEE
T ss_pred CcEEEEecC---CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceE-CCCCCEEE
Confidence 222222210 01113555543333222234889999999998 555 4899999999875432111111 22233 2
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.+.|.+.....+|.|.|+|.|.|....
T Consensus 185 ~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 185 YSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 345666665556789999999997643
No 333
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.1e-15 Score=137.55 Aligned_cols=172 Identities=16% Similarity=0.256 Sum_probs=110.4
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Eeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 174 (540)
...+.+|++++|.|.+.+. +.+.+.|+|++ .... ...++.... .....+|.|.+++.+|
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D 85 (256)
T 3ux9_B 11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK-----SGTSASLAITGLQSED 85 (256)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEECSCCGGG
T ss_pred cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc-----cCCEEEEEECCCChhh
Confidence 3578899999999999776 77899999842 1110 122333321 1123489999999999
Q ss_pred CeEEEEEEEcCCce---eEEEEEEEEecCcCCCC--------------CCCeeccCCceeecCCCCeEEEEEEecccC--
Q psy670 175 GGNYRCNACNSIGE---SNANIALNFQGGENGAG--------------FAPSFIEKPRIIPNESGTLIQMKCKCSAKP-- 235 (540)
Q Consensus 175 ~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~--------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-- 235 (540)
+|.|+|.+.+..+. ....+.|.|...+.... ..+.+.. +....+.+|++++|.|.+.+.+
T Consensus 86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~ 164 (256)
T 3ux9_B 86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFS 164 (256)
T ss_dssp CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGG
T ss_pred CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCccc
Confidence 99999999986532 23445666665321100 0112322 2334578999999999998866
Q ss_pred CCeEEEEeC--CEEee------c-----------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 236 RPEVKWFKA--DKLVK------E-----------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 236 ~~~v~W~~~--~~~l~------~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
.+.+.|+++ +..+. . ..++.+..... .....|.|.+++.+|+|.|+|.+.+..
T Consensus 165 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 165 SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNS--KNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETT--TTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCC--CCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 678999986 32210 0 11333332221 223479999999999999999999863
No 334
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.66 E-value=1.8e-15 Score=136.69 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=115.2
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+. +...+.|+|.. .. +. ...++.+.... .....+|.|.+
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~ 86 (242)
T 1hxm_B 10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP---ETSTSTLTIHN 86 (242)
T ss_dssp EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET---TTTEEEEEECS
T ss_pred eEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecC---CCcEEEEEECC
Confidence 4568899999999999775 56789999842 21 10 12333333211 11235899999
Q ss_pred CCCCCCeEEEEEEEcCCc-----e--eEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEeccc-CC-CeE
Q psy670 170 PTKDDGGNYRCNACNSIG-----E--SNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSAK-PR-PEV 239 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~-----~--~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v 239 (540)
++.+|+|.|.|.+.+... . ....+.|.|...+.....+|... ..+....+.+|+.++|.|.+.+. |. +.|
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v 166 (242)
T 1hxm_B 87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKI 166 (242)
T ss_dssp CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEE
T ss_pred CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEE
Confidence 999999999999987531 1 12345677765322110122221 11333445679999999999885 65 689
Q ss_pred EEEeCCE-EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 240 KWFKADK-LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 240 ~W~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
.|++++. .+...........+......+.|.|..... + |.|+|.+.|..+.......+.+
T Consensus 167 ~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 167 HWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp EEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred EEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 9999987 553321111111112223345788877664 4 9999999998877655555544
No 335
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.66 E-value=4.4e-14 Score=122.28 Aligned_cols=159 Identities=13% Similarity=0.227 Sum_probs=112.9
Q ss_pred CceeecCCCCeEEEEEEecc-cC---CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 214 PRIIPNESGTLIQMKCKCSA-KP---RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~-~p---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
|....+..|+.++|.|.+.+ .| +..+.|+|++..+..... .|.+..+...++|.|+|.+.+.
T Consensus 9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT~--------------tLti~s~t~sdSG~YqCvVTDa 74 (304)
T 3shs_A 9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------------TLTVADATSENAGSYKVTVQDT 74 (304)
T ss_dssp ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCSS--------------EEEESSCCGGGCEEEEEEEEET
T ss_pred CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCcc--------------eEEeeeccccCCeEEEEEEEEC
Confidence 44556778999999999865 66 447999999987654322 6888999999999999999997
Q ss_pred CCCeeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEE--Ec-cC-----CCeEEEEECCEEccCCCceEE
Q psy670 290 FGESNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKV--KA-KP-----MPEIVWFHEGKELQQTDRISW 360 (540)
Q Consensus 290 ~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~--~~-~p-----~~~i~W~~~~~~~~~~~~~~~ 360 (540)
.|.......+.|.... .+.+ +..|....+..|..+.|.+.+ .| .| ...+.|++++..+....
T Consensus 75 ~Gcs~tSs~VtVT~~a-----~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq---- 145 (304)
T 3shs_A 75 DTMTSVESEVFLMEEA-----ELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ---- 145 (304)
T ss_dssp TTCCEEECCCEEECBC-----CEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS----
T ss_pred CCCeeeeeeEEEeccC-----ceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc----
Confidence 7765444344444321 1222 233555566678899999988 43 44 46899999998764322
Q ss_pred EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEEE
Q psy670 361 NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNIE 406 (540)
Q Consensus 361 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~ 406 (540)
.|++......++|.|+|.+.|..+.. +.++.+.+.
T Consensus 146 -----------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~ 182 (304)
T 3shs_A 146 -----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA 182 (304)
T ss_dssp -----------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC
T ss_pred -----------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE
Confidence 57777788889999999999997744 344444443
No 336
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.66 E-value=1.3e-16 Score=140.32 Aligned_cols=175 Identities=11% Similarity=0.169 Sum_probs=103.4
Q ss_pred ccCCCeEEEEEEEeecC----CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 114 HQDGDLLVMECVLEASP----MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
+.+|+++.|.|.+.|.+ ...|.|+|++..+.............+.......|.|.....+|+|.|+|.+.|..+..
T Consensus 15 ~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~ 94 (207)
T 1l6x_A 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94 (207)
T ss_dssp HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred eecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence 47999999999998875 24999999998775431110011111111222345554444556999999999987754
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDT--Y 265 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~--~ 265 (540)
.....+.+.. ....+|.+...+.......|..+.|.|.+.+ +|+ +.|.|+++|..+........... .++. .
T Consensus 95 ~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~-~~gt~~~ 170 (207)
T 1l6x_A 95 PIEKTISKAK---GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD-SDGSFFL 170 (207)
T ss_dssp CEEEEECCCC---SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEEC-TTSCEEE
T ss_pred ceEEEeccCC---CCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceEC-CCCCEEE
Confidence 2222332100 0112455433222221224566999999998 454 48999999998753221111111 2222 2
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.+.|.+.....+|.|.|+|.|.|....
T Consensus 171 ~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 171 YSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 345667666556799999999997543
No 337
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=144.00 Aligned_cols=184 Identities=14% Similarity=0.221 Sum_probs=116.6
Q ss_pred CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe--CCEEe------------ecc----CceEEEEecCCCeEEEEE
Q psy670 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--ADKLV------------KES----SKIKIIVNEQDDTYEIIC 269 (540)
Q Consensus 208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~l------------~~~----~~~~~~~~~~~~~~~~~l 269 (540)
+.+...+..+.+.+|++++|.|.+. .+.+.+.|++ .+... ... .++.+... ......|
T Consensus 27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL 102 (268)
T 3pl6_D 27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP---EGSVSTL 102 (268)
T ss_dssp SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT---TSSSEEE
T ss_pred ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec---CCCEEEE
Confidence 4455566778888999999999986 5678899998 22211 000 22222211 1223479
Q ss_pred EEeCCCCCCcEEEEEEEEcC--CCCeeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEccCCC--eEE
Q psy670 270 EITDPIGPDSGTYRCNVKNE--FGESNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAKPMP--EIV 344 (540)
Q Consensus 270 ~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~p~~--~i~ 344 (540)
.|.+++.+|+|.|.|.+.+. .........+.|...... ..+|.+ +..+....+..|+.++|.|.+.+.+++ .+.
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~ 181 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 181 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCccc-ccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEE
Confidence 99999999999999999974 222334455666542111 113443 333444445569999999999986554 899
Q ss_pred EEECCEEccCCCceEEEE-----E-ecCCe-eEEEEEEcCCCCCC-CeeEEEEEEcCCee
Q psy670 345 WFHEGKELQQTDRISWNV-----T-LKGDK-YHIRLEVKDPRKED-TGLYKCNIKNFHGE 396 (540)
Q Consensus 345 W~~~~~~~~~~~~~~~~~-----~-~~~~~-~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~ 396 (540)
|+++|..+.......... . .++.. ..+.|.|.....+| .|.|+|.|.|....
T Consensus 182 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 182 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp EEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 999998886532110000 0 11211 22468888877777 99999999997654
No 338
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.66 E-value=6.9e-16 Score=139.32 Aligned_cols=176 Identities=14% Similarity=0.225 Sum_probs=112.1
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--------------CEeec---CCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--------------TKVIE---DTGRIKMSKKSIGKDTYLLRLEINNPTKD 173 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 173 (540)
...+.+|++++|.|.+.+ +.+.+.|+|. +.... ...++.+... ....++|.|.+++.+
T Consensus 11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~ 85 (240)
T 3q5y_A 11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF----DDYHSEMNMSALELE 85 (240)
T ss_dssp EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC----TTSCEEEEECSCCGG
T ss_pred eeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC----CCCEEEEEECcCChh
Confidence 456889999999999864 7779999982 11111 1134433321 112348999999999
Q ss_pred CCeEEEEEEEcCC---ceeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEE
Q psy670 174 DGGNYRCNACNSI---GESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKL 247 (540)
Q Consensus 174 d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~ 247 (540)
|+|.|.|.+.+.. ........|.|..... ...+|.+. ..+....+.+|+.++|.|.+.+ .|.+ .+.|+++|..
T Consensus 86 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~ 164 (240)
T 3q5y_A 86 DSAMYFCASSLRWGDEQYFGPGTRLTVLEDLR-NVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE 164 (240)
T ss_dssp GCEEEEEEEESSTTBCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred HCEEEEEEEccCCCcceEEcCCEEEEEecccc-CCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEE
Confidence 9999999998321 2223344566653111 01244443 2334444556899999999988 6666 7999999998
Q ss_pred eeccCceE---EEEecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCC
Q psy670 248 VKESSKIK---IIVNEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGE 292 (540)
Q Consensus 248 l~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 292 (540)
+....... ....+......+.|.|.....+| .|.|+|.+.|....
T Consensus 165 l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 165 VHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp ECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 86533211 11111222233468898888888 67999999987544
No 339
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.66 E-value=1.7e-15 Score=138.06 Aligned_cols=178 Identities=15% Similarity=0.243 Sum_probs=113.4
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+....+.+|++++|.|.+.+.+ .+.+.|+++. ..+. ...++.+.... ......|.|.
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~ 90 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDK--SSSTVYIQLS 90 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG--GGTEEEEEEC
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecC--CCCEEEEEEc
Confidence 5567788999999999998866 5789999863 2111 01222222211 1123479999
Q ss_pred CCCCCCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy670 273 DPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFH 347 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~ 347 (540)
+++.+|+|.|.|.+.+..+. ......|.|.... ..+|.+...+....+..|+.++|.|.+.+. |.+ .|.|++
T Consensus 91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k 167 (261)
T 2xqy_G 91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK---TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 167 (261)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC---CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC---CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence 99999999999999986431 1233456665421 124554432222235679999999999984 766 999999
Q ss_pred CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670 348 EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 399 (540)
++..+........ ...+. ...+.|.|.....+| |.|+|.|.|.......
T Consensus 168 ~g~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~ 217 (261)
T 2xqy_G 168 GSLSSGVHTFPAV--LQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKV 217 (261)
T ss_dssp GTCCTTEEECCCE--EETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred CCCcCceEecCce--ecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccE
Confidence 9876532111001 11111 123579999888878 9999999997655443
No 340
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.66 E-value=4.3e-16 Score=141.15 Aligned_cols=179 Identities=18% Similarity=0.279 Sum_probs=113.3
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEee--------------cCCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI--------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 174 (540)
...+.+|++++|.|.+.+.+.+.+.|+|. +... ....++.+... ....++|.|.+++.+|
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~I~~v~~~D 85 (245)
T 3nfj_J 10 TLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRP----QDRQFILSSKKLLLSD 85 (245)
T ss_dssp EEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEE----ETTEEEEEESSCCGGG
T ss_pred eEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEec----CCCEEEEEECCCChhh
Confidence 45678999999999999888999999992 2110 01123333322 1123489999999999
Q ss_pred CeEEEEEEEcCCc------eeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCC
Q psy670 175 GGNYRCNACNSIG------ESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKAD 245 (540)
Q Consensus 175 ~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~ 245 (540)
+|.|.|.+.+..+ .....+.|.|..... ...+|.+. ..+....+.+|+.+.|.|.+.+ .|++ .+.|+++|
T Consensus 86 ~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g 164 (245)
T 3nfj_J 86 SGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLN-KVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNG 164 (245)
T ss_dssp CEEEEEEEECCTTTSSCCCEECCCEEEEEESCGG-GCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred CEEEEEEEeeccCCCceeEEECCCeEEEEEcccC-CCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECC
Confidence 9999999998322 223344566654111 01134432 2233333455999999999988 4544 79999999
Q ss_pred EEeeccCceEEEE-------ecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCCee
Q psy670 246 KLVKESSKIKIIV-------NEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGESN 294 (540)
Q Consensus 246 ~~l~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~ 294 (540)
..+.......... .+......+.|.|.....+| .|.|+|.+.+......
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~ 221 (245)
T 3nfj_J 165 KEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp EEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSS
T ss_pred EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCc
Confidence 9886532211000 11112223478888877777 6799999998755443
No 341
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.66 E-value=1.8e-16 Score=141.83 Aligned_cols=174 Identities=11% Similarity=0.172 Sum_probs=106.7
Q ss_pred ccCCCeEEEEEEEeecC----CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 114 HQDGDLLVMECVLEASP----MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
+..|+.++|.|.+.|+. ...|.|+|+|..+.............+.....+.|.|.....+|+|.|+|.+.+..+..
T Consensus 36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~ 115 (240)
T 4acp_A 36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 115 (240)
T ss_dssp HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence 56799999999998864 23799999999885432111111112233344578888877888999999999987643
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDT--Y 265 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~--~ 265 (540)
.....+.... ....+|.+...+.......|+.+.|.|.+.+ +|.. .+.|+++|..+........... .++. .
T Consensus 116 ~~~~~i~~~~---~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~-~dgt~~~ 191 (240)
T 4acp_A 116 PIEKTISKAK---GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLD-SDGSFFL 191 (240)
T ss_dssp CEEEEECCCC---SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEEC-TTSCEEE
T ss_pred cccccccccC---CCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceEC-CCCCEEE
Confidence 2222222110 0113555544433332334899999999998 5654 7999999988643221111111 2222 2
Q ss_pred EEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 266 EIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 266 ~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
.+.|.+......+.+.|+|.+.+..-
T Consensus 192 ~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 192 YSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEEEEChHHhCCCCEEEEEEEECCC
Confidence 34677766555678999999999753
No 342
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.66 E-value=1.2e-15 Score=138.31 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=101.8
Q ss_pred ccceeeeCcceeEEeecceeeeeecC--eec---c---------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLL---K---------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l---~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 72 (540)
.+.|.+.|.|.. ....+.+.|||++ ..+ . ...|+.+..... ..+|+|.+++.+|+|.|.
T Consensus 20 ~L~C~~~~~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~------~~~L~I~~v~~~D~G~Y~ 92 (247)
T 1svz_A 20 SISCRSSQTIVH-NNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGT------DFTLKISRVEAEDLGIYY 92 (247)
T ss_dssp EEEEEESSCCBC-TTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT------EEEEEESSCCGGGCEEEE
T ss_pred EEEEeCCCcccc-cCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCC------EEEEEECCCCHHHCEEEE
Confidence 467999888710 0002789999953 211 0 134565543222 368999999999999999
Q ss_pred EEEEccCcc-eeeeEEEEEeecCCcc-ccCC--CCCCCC-CCCCccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee
Q psy670 73 VIAKNKNGE-GSSTVNLNFSEEDGKL-KVPG--GKAPRF-PKKPTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI 143 (540)
Q Consensus 73 C~~~~~~~~-~~~~~~l~v~~~~~~~-~i~~--~~~~~~-~~~~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~ 143 (540)
|.+.+..+. ....+.|.|...+... .... .....+ ......+.+|++++|.|.+.+.+ .+.+.|+|++ ..+
T Consensus 93 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~ 172 (247)
T 1svz_A 93 CFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDL 172 (247)
T ss_dssp EEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCE
T ss_pred EEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCc
Confidence 999987553 2234567766542100 0000 000000 11234588999999999998774 5689999953 211
Q ss_pred ------c-----------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 144 ------E-----------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 144 ------~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
. ...++.+.... .....+|.|.+++.+|+|.|+|.+.|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 173 KYVGWINTETDEPTFADDFKGRFAFSLDT---STSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEEECTTTCCEEECGGGSSSEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEEEEcCCCccccCccccCcEEEEEec---CCCEEEEEECCCChhHCEEEEEEEecc
Confidence 0 02333332211 122348999999999999999999985
No 343
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.65 E-value=4.3e-16 Score=141.15 Aligned_cols=176 Identities=16% Similarity=0.253 Sum_probs=112.2
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEe--------------CCEeecCC----CceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQ--------------GTKVIEDT----GRIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~--------------~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
...+.+|++++|.| ..+.+.+.+.|+| ++...... .++.+... ....++|.|.+++.
T Consensus 11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~ 85 (245)
T 4ei6_B 11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP----DGSYFTLKIQPTAL 85 (245)
T ss_dssp EEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC----TTSCEEEEECSCCG
T ss_pred eEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec----cCceEEEEECCCCH
Confidence 45688999999999 5577888999998 22211111 34443321 12234899999999
Q ss_pred CCCeEEEEEEEcCC----ceeEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCC
Q psy670 173 DDGGNYRCNACNSI----GESNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKAD 245 (540)
Q Consensus 173 ~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~ 245 (540)
+|+|.|.|.+.+.. ........|.|..... ...+|.+ ...+....+.+|+.++|.|.+.+ .|.+ .+.|+++|
T Consensus 86 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g 164 (245)
T 4ei6_B 86 EDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 164 (245)
T ss_dssp GGCEEEEEEEECSSTTCCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hHCEEEEEEEccCCCcceEEEcCCcEEEEecccC-CCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECC
Confidence 99999999998532 2233445566653111 0113433 23344444556999999999988 5555 89999999
Q ss_pred EEeeccCceEEEE-------ecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCC
Q psy670 246 KLVKESSKIKIIV-------NEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGE 292 (540)
Q Consensus 246 ~~l~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 292 (540)
..+.......... .+......+.|.|.....+| .|.|+|.+.+....
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 165 KEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 9886532211000 01112223468888887777 89999999986543
No 344
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.65 E-value=2.1e-15 Score=138.47 Aligned_cols=181 Identities=17% Similarity=0.300 Sum_probs=113.4
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeCC--EE---eec---------cCceEEEEecCCCeEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~ 267 (540)
.+.+...+..+.+.+|++++|.|.+.+.+ .+.+.|++.. .. +.. ..++..... . ...
T Consensus 15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~--~--~~~ 90 (268)
T 1x9q_A 15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGS--G--TDF 90 (268)
T ss_dssp CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--T--TEE
T ss_pred cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcC--C--CEE
Confidence 34455567778889999999999998876 4789999853 21 110 122222211 1 124
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccC--CCCCCC--------------eEEeCCceEEeeCCCeEE
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAE--PEGDPP--------------TFIEKPKIRSEQGGKLVV 330 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~--~~~~~p--------------~~~~~~~~~~~~~g~~v~ 330 (540)
.|.|.+++.+|+|.|.|.+.+..+. ......|.|...+. ....+| ..+..+....+.+|+.++
T Consensus 91 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~ 170 (268)
T 1x9q_A 91 TLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK 170 (268)
T ss_dssp EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred EEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence 7999999999999999999987543 22334555554321 000111 123334456788999999
Q ss_pred EEEEEEccCC--CeEEEEECC--EEcc-------------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 331 MECKVKAKPM--PEIVWFHEG--KELQ-------------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 331 l~C~~~~~p~--~~i~W~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
|.|.+.+.+. +.+.|++++ ..+. ...++... .+......+|.|.+++.+|+|.|.
T Consensus 171 L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~ 248 (268)
T 1x9q_A 171 LSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTIS--RDDSKSSVYLQMNNLRVEDTGIYY 248 (268)
T ss_dssp EEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEE--EEGGGTEEEEEECSCCGGGCEEEE
T ss_pred EEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEE--EeCCCCEEEEEECCCCHHHCEEEE
Confidence 9999998764 789999852 2110 11233222 111112347999999999999999
Q ss_pred EEEEcC
Q psy670 388 CNIKNF 393 (540)
Q Consensus 388 C~a~n~ 393 (540)
|.|.+.
T Consensus 249 C~a~~~ 254 (268)
T 1x9q_A 249 CTGASY 254 (268)
T ss_dssp EEEEET
T ss_pred EEEccC
Confidence 999875
No 345
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.65 E-value=4.9e-16 Score=140.98 Aligned_cols=175 Identities=16% Similarity=0.238 Sum_probs=98.4
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+.+ .+.+.|||.. ..+. ...++.+..+. .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (257)
T 3bn9_D 9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN---SKNTLYLQMSS 85 (257)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEET---TTTEEEEEEES
T ss_pred CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecC---CCCEEEEEECC
Confidence 35688999999999998765 5789999843 1110 11333333221 11234899999
Q ss_pred CCCCCCeEEEEEEEcCCc----------e---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-C
Q psy670 170 PTKDDGGNYRCNACNSIG----------E---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-P 235 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~----------~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p 235 (540)
++.+|+|.|.|.+.+..+ . ....+.|.|.... ..+|.+........+..|+.++|.|.+.+. |
T Consensus 86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~---~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P 162 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP 162 (257)
T ss_dssp CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC---CBCCEECCCCC-----------CCCEEEEEBS
T ss_pred CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC---CcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence 999999999999998754 1 1133467776421 124555433322335679999999999884 7
Q ss_pred CC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 236 RP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 236 ~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.+ .|.|++++..+...........+......+.|.|.++..+| |.|+|.+.|....
T Consensus 163 ~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~ 219 (257)
T 3bn9_D 163 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 219 (257)
T ss_dssp SCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred CCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence 76 89999998764211110111111112234568888887777 9999999996544
No 346
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.65 E-value=5.1e-16 Score=140.65 Aligned_cols=184 Identities=15% Similarity=0.272 Sum_probs=115.4
Q ss_pred ccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEee--------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVK--------------ESSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~--------------~~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
...+..+.+.+|+.++|.|.+.+.+.+.+.|++. +.... ...++.+.... .....|.|.++
T Consensus 5 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~sL~I~~v 81 (245)
T 3nfj_J 5 HQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQ---DRQFILSSKKL 81 (245)
T ss_dssp EEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEE---TTEEEEEESSC
T ss_pred eCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecC---CCEEEEEECCC
Confidence 3345667788999999999999988999999982 21110 01122222111 12347999999
Q ss_pred CCCCcEEEEEEEEcCCC------CeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670 275 IGPDSGTYRCNVKNEFG------ESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKAK-PMP-EIVW 345 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W 345 (540)
+.+|+|.|.|.+.+..| .......+.|...... ..+|.+. ..+....+..|+.+.|.|.+.+. |++ .+.|
T Consensus 82 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W 160 (245)
T 3nfj_J 82 LLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNK-VFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSW 160 (245)
T ss_dssp CGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGG-CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred ChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCC-CCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEE
Confidence 99999999999998322 1223345666542111 1144443 22333334459999999999984 444 7899
Q ss_pred EECCEEccCCCceEEEE-E-----ecCCe-eEEEEEEcCCCCCC-CeeEEEEEEcCCeeeE
Q psy670 346 FHEGKELQQTDRISWNV-T-----LKGDK-YHIRLEVKDPRKED-TGLYKCNIKNFHGELN 398 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~-~-----~~~~~-~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 398 (540)
+++|..+.......... . .++.. ..+.|.|.....+| .|.|+|.|.|......
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~ 221 (245)
T 3nfj_J 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp EETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSS
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCc
Confidence 99999886532211000 0 11211 22478888887777 6799999999865443
No 347
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.65 E-value=3e-16 Score=140.52 Aligned_cols=176 Identities=9% Similarity=0.097 Sum_probs=112.9
Q ss_pred ccccCCCeEEEEEEEeec-CC-C-ceEEEeCCEee-cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670 112 TIHQDGDLLVMECVLEAS-PM-P-DIIWYQGTKVI-EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~-p~-~-~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 187 (540)
..+.+|+.++|.|.+.|. |. + .+.|+++|..+ ...... ......+.....+.|.|.++..+|+|.|+|.+.+..+
T Consensus 23 ~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~-~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~ 101 (231)
T 2w59_A 23 GELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMV-LQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL 101 (231)
T ss_dssp HHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCE-EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred hhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecccccccc-ceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCC
Confidence 456799999999999885 64 4 99999998876 332221 1111122223445899999999999999999998775
Q ss_pred eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEeccc-C-CCeEEEEeCCEEeeccCceE--EEEe---
Q psy670 188 ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAK-P-RPEVKWFKADKLVKESSKIK--IIVN--- 259 (540)
Q Consensus 188 ~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~l~~~~~~~--~~~~--- 259 (540)
.... .+.|..... ...+|.+.. .+....+ .+..++|.|.+.++ | .+.|.|+++|..+....... ....
T Consensus 102 ~~~~--~~~v~~~~~-~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~ 177 (231)
T 2w59_A 102 PLPL--SKSVYRNTG-PTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERT 177 (231)
T ss_dssp SSCE--EEEECCCCS-CCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTT
T ss_pred CCce--EEEEecCCC-CCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCccc
Confidence 4333 333322100 112444432 2222222 25579999999984 5 37899999999986654111 1111
Q ss_pred -----c--CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 260 -----E--QDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 260 -----~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
. ......+.|.|.....+|.|.|+|.|.|....
T Consensus 178 ~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 178 ANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp SCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred ccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 1 11223457888888888899999999997654
No 348
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.65 E-value=1.5e-15 Score=129.90 Aligned_cols=156 Identities=12% Similarity=0.206 Sum_probs=105.4
Q ss_pred ceeecCCCCeEEEEEEecc-cCCCeEEEEeC-CEEeec---cCc---------eEEEEecCCCeEEEEEEEeCCCCCCcE
Q psy670 215 RIIPNESGTLIQMKCKCSA-KPRPEVKWFKA-DKLVKE---SSK---------IKIIVNEQDDTYEIICEITDPIGPDSG 280 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~-~~~l~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g 280 (540)
..+.+.+|++++|.|.+.. .+.+.|.|++. +..+.. ... .+...... ...|.|.+++.+|+|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~----~~sL~I~~v~~~D~G 82 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT----NGALRIYNVSKEDRG 82 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTT----TCCEEECSCCGGGCE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCC----CccEEEcCCCHHHCe
Confidence 3456778999999999854 44678999994 333221 000 01111111 126999999999999
Q ss_pred EEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceE
Q psy670 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRIS 359 (540)
Q Consensus 281 ~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~ 359 (540)
.|+|.+.+.. .....+.|.|...+ ..|.+.. .+..+.|.|.+ .+ |.+.+.|++++..+..
T Consensus 83 ~Y~C~v~~~~-~~~~~~~L~V~~~~----~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~----- 143 (180)
T 2dru_A 83 DYYMRMLHET-EDQWKITMEVYEMV----SKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS----- 143 (180)
T ss_dssp EEEEEEESSS-EEEEEEEEEEECCC----CCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-----
T ss_pred EEEEEEEcCC-eEEEEEEEEEECCC----CCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-----
Confidence 9999998765 45556667776421 1333322 34569999999 55 9999999999988751
Q ss_pred EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 360 WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 360 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
..+. +|.+.. .+|+|.|+|.|.|..+.......+
T Consensus 144 ----~~~~----~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 144 ----LRQK----TMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp ----ESSS----EEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred ----CCCC----EEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 1111 566643 679999999999999887665543
No 349
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.65 E-value=2.3e-15 Score=135.87 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=116.8
Q ss_pred eccCCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EE---ee--------------ccCceEEEEecCCCeEEEE
Q psy670 210 FIEKPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KL---VK--------------ESSKIKIIVNEQDDTYEII 268 (540)
Q Consensus 210 ~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~---l~--------------~~~~~~~~~~~~~~~~~~~ 268 (540)
+...+..+.+.+|++++|.|.+.+. +...+.|++.. .. +. ...++.+.... ......
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~ 81 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP--ETSTST 81 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET--TTTEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecC--CCcEEE
Confidence 3445667778899999999999875 56789999843 21 11 11222222211 112357
Q ss_pred EEEeCCCCCCcEEEEEEEEcCCC-C------eeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEcc-C
Q psy670 269 CEITDPIGPDSGTYRCNVKNEFG-E------SNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAK-P 339 (540)
Q Consensus 269 l~i~~~~~~d~g~y~C~~~~~~~-~------~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~-p 339 (540)
|.|.+++.+|+|.|.|.+.+... . ......|.|...+.....+|.. +..+....+..|+.++|.|.+.+. |
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P 161 (242)
T 1hxm_B 82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP 161 (242)
T ss_dssp EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence 99999999999999999987531 1 1223566666532100011211 111322335579999999999986 6
Q ss_pred C-CeEEEEECCE-EccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 340 M-PEIVWFHEGK-ELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 340 ~-~~i~W~~~~~-~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
. +.+.|++++. .+........ ...++. ...+.|.|..... + |.|+|.|.|..+.......+.+
T Consensus 162 ~~~~v~W~~~~~~~l~~~~~~~~-~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 162 DVIKIHWEEKKSNTILGSQEGNT-MKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CCEEEEEEESSSCCCCCCEECCC-EECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCeEEEEEcCCCEeecCccccce-ecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 4 6899999987 5543211000 112222 2234788887665 5 9999999999877654444444
No 350
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.65 E-value=1.1e-15 Score=136.17 Aligned_cols=175 Identities=13% Similarity=0.250 Sum_probs=111.8
Q ss_pred ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-------------------ccCceEEEEecCCCeEEEEEEE
Q psy670 215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-------------------ESSKIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-------------------~~~~~~~~~~~~~~~~~~~l~i 271 (540)
....+.+|++++|.|.+.+.+ ...+.|++.. .... ...++.+.... ......|.|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I 85 (221)
T 3m8o_H 8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDD--SKNTAFLQM 85 (221)
T ss_dssp SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEG--GGTEEEEEE
T ss_pred CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecC--CCCEEEEEE
Confidence 345678899999999998743 5789999732 1110 01222222221 122347999
Q ss_pred eCCCCCCcEEEEEEEEcCC--CCeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEc-cCC-C-eEEE
Q psy670 272 TDPIGPDSGTYRCNVKNEF--GESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKA-KPM-P-EIVW 345 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~-~-~i~W 345 (540)
.+++.+|+|.|.|.+.+.. ........+.|.... ..+|.+. ..+... .+|+.++|.|.+.+ .|. + .+.|
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~---~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W 160 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS---PTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTW 160 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC---CBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEE
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCC---CCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEE
Confidence 9999999999999999863 223344556665321 1245554 223222 68999999999998 676 4 8999
Q ss_pred EECCEEccCCCceEEEE-EecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 346 FHEGKELQQTDRISWNV-TLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
+++|..+....... .. ..++. ...+.|.|.....+|+|.|+|.|.|..+..
T Consensus 161 ~~~g~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 161 SESGQGVTARNFPP-SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp SCCSTTCEEEECCC-EECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred EECCEECceEEcCc-eeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 99987663211000 00 01111 123469999999999999999999987543
No 351
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.64 E-value=1.4e-15 Score=134.65 Aligned_cols=175 Identities=17% Similarity=0.320 Sum_probs=108.1
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec----------------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE----------------DTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|+. .... ...++.+.... ....++|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v 85 (215)
T 1c5d_H 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT---SKSQVFLKMNSL 85 (215)
T ss_dssp CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEET---TTTEEEEEESSC
T ss_pred CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeC---CCceEEEEECCC
Confidence 34678999999999997764 4689999852 2110 11233333221 112348999999
Q ss_pred CCCCCeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCC
Q psy670 171 TKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKAD 245 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~ 245 (540)
+.+|+|.|.|.+.+..+. ....+.|.|.... ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 162 (215)
T 1c5d_H 86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ---TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGA 162 (215)
T ss_dssp CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC---CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CcccCEEEEEEEecCCcccceEcCCEEEEecCCC---CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCC
Confidence 999999999999886421 1233566776321 124444432322335679999999999985 877 99999988
Q ss_pred EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670 246 KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295 (540)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 295 (540)
..+........ .. . +.+.....+.....++ |.|+|.+.|..+....
T Consensus 163 ~~~~~~~~~~~-~~-~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~ 208 (215)
T 1c5d_H 163 LSSDVHTFPAV-LQ-S-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV 208 (215)
T ss_dssp TCCSCCBCCCE-EE-T-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred ccCceEecCcc-cC-C-CCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence 65421111111 11 1 3333222233344356 9999999998776543
No 352
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.64 E-value=8.6e-16 Score=136.14 Aligned_cols=184 Identities=19% Similarity=0.282 Sum_probs=128.0
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC--ceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS--KIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 283 (540)
++|.+ ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .+.+.... . ...|.|.+++.+|.|.|+
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~--~--~~~L~i~~~~~~d~G~Y~ 92 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP--S--ASYLEVTPDSENDFGNYN 92 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEET--T--EEEEEECCCSGGGCEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCC--C--eeEEEEecCChhhCeEEE
Confidence 36666 45666888899999999999999999999999999987653 33332211 1 348999999999999999
Q ss_pred EEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc----cCCC--eEEEEECCEEccCCCc
Q psy670 284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA----KPMP--EIVWFHEGKELQQTDR 357 (540)
Q Consensus 284 C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~----~p~~--~i~W~~~~~~~~~~~~ 357 (540)
|.+.|..|.....+.+.|...+. +|.... ....+..+.|.|.... .|.. .+.|.+++.....
T Consensus 93 C~a~n~~g~~~~~~~l~v~~~P~----~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~--- 160 (215)
T 3mtr_A 93 CTAVNRIGQESLEFILVQADTPS----SPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH--- 160 (215)
T ss_dssp EEEECSSCEEEEEEEEEECCCCC----CCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE---
T ss_pred EEEEECCCceEEEEEEEECCCCC----CCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc---
Confidence 99999999888887777765432 232221 1234678899997432 2332 4788877643211
Q ss_pred eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
..............|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus 161 -~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T 209 (215)
T 3mtr_A 161 -SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209 (215)
T ss_dssp -EEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred -ccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEe
Confidence 1111100000001799999999999999999999999887776666654
No 353
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.64 E-value=1.7e-15 Score=137.76 Aligned_cols=184 Identities=13% Similarity=0.165 Sum_probs=115.1
Q ss_pred ceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E--Eee---------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 215 RIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K--LVK---------------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~--~l~---------------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
..+.+.+|++++|.|.+.+. +...+.|++.. . ... ...++.+.... ......|.|.+
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~ 85 (253)
T 3liz_H 8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDN--AKNTLFLQMSS 85 (253)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEG--GGTEEEEEECS
T ss_pred CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC--CCCEEEEEECC
Confidence 34567889999999999763 35679999842 1 110 01222222221 12234699999
Q ss_pred CCCCCcEEEEEEEEcCC----CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy670 274 PIGPDSGTYRCNVKNEF----GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFH 347 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~ 347 (540)
++.+|+|.|.|.+.+.. ........+.|.... ..+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 162 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 162 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC---CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC---CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence 99999999999998752 222334556665211 12555554333344567999999999998 6766 899999
Q ss_pred CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 348 EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
++..+........ ...+. ...+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 163 ~~~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 163 GSLSSGVHTFPAV--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp GTBCTTEEECCCE--EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCeecceEeCCcc--ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 9874321110000 11111 123589999999989 99999999998877666666544
No 354
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=142.61 Aligned_cols=176 Identities=14% Similarity=0.217 Sum_probs=111.5
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEe--CCEee------------cCC----CceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQ--GTKVI------------EDT----GRIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~--~~~~~------------~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
...+.+|++++|.|.+. .+.+.+.|+| .+... ... .++.+... .....+|.|.+++.
T Consensus 35 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~I~~v~~ 109 (268)
T 3pl6_D 35 NKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP----EGSVSTLKIQRTER 109 (268)
T ss_dssp EEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT----TSSSEEEEECSCCG
T ss_pred EEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec----CCCEEEEEECCCCc
Confidence 35688999999999985 6778999999 22211 010 34433321 12234899999999
Q ss_pred CCCeEEEEEEEcC--CceeEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEecccCC-C-eEEEEeCCEE
Q psy670 173 DDGGNYRCNACNS--IGESNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCSAKPR-P-EVKWFKADKL 247 (540)
Q Consensus 173 ~d~G~Y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~-~-~v~W~~~~~~ 247 (540)
+|+|.|+|.+.+. .........|.|...... ..+|.+ ...+....+.+|+.++|.|.+.+.++ + .+.|+++|..
T Consensus 110 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~ 188 (268)
T 3pl6_D 110 GDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE 188 (268)
T ss_dssp GGCEEEEEEEESSSSSCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE
T ss_pred ccCEEEEEEEecCCCceeeCCcEEEEEecCccc-ccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE
Confidence 9999999999974 233334455666542111 113433 22344444556999999999998544 4 8999999988
Q ss_pred eeccCceEEE-----E--ecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCC
Q psy670 248 VKESSKIKII-----V--NEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGE 292 (540)
Q Consensus 248 l~~~~~~~~~-----~--~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 292 (540)
+......... . .+......+.|.|.....+| .|.|+|.+.|....
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 189 VHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 8643211100 0 01112223467888877777 99999999987544
No 355
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.63 E-value=2.2e-13 Score=117.96 Aligned_cols=236 Identities=17% Similarity=0.268 Sum_probs=150.5
Q ss_pred cccCCCeEEEEEEEee-cC---CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 113 IHQDGDLLVMECVLEA-SP---MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 113 ~v~~G~~v~l~C~~~~-~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
.+..|+.++|+|.+.+ .| ..+++|+|+|..+..... .|.|..+...|+|.|+|.+.+..|.
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT~---------------tLti~s~t~sdSG~YqCvVTDa~Gc 77 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA---------------TLTVADATSENAGSYKVTVQDTDTM 77 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEEEEEEETTTC
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCcc---------------eEEeeeccccCCeEEEEEEEECCCC
Confidence 4678999999999954 46 337999999988754321 7899999999999999999998776
Q ss_pred eEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEe--cc-cC-----CCeEEEEeCCEEeeccCceEEEEe
Q psy670 189 SNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKC--SA-KP-----RPEVKWFKADKLVKESSKIKIIVN 259 (540)
Q Consensus 189 ~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~--~~-~p-----~~~v~W~~~~~~l~~~~~~~~~~~ 259 (540)
......+.|.... .+.+ ...|....+..|..+.|.+.+ .+ .| ..+++|++++..+....
T Consensus 78 s~tSs~VtVT~~a-----~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq------- 145 (304)
T 3shs_A 78 TSVESEVFLMEEA-----ELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ------- 145 (304)
T ss_dssp CEEECCCEEECBC-----CEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS-------
T ss_pred eeeeeeEEEeccC-----ceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc-------
Confidence 5444344444211 1122 233555556678889999887 44 44 46899999998775433
Q ss_pred cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc--
Q psy670 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-- 337 (540)
Q Consensus 260 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-- 337 (540)
.|++......++|.|+|.+.+..+....+..+.|.... -+.-........+..|+.+.|.-.+..
T Consensus 146 --------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (304)
T 3shs_A 146 --------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT-----MNVDQDVVESKTVALGNEISLNYVVSEDI 212 (304)
T ss_dssp --------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE-----EEEEECCCSEEEEETTSCEEECCEEEEEC
T ss_pred --------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc-----cccchhheEeehhhcCcEEEEEEEEeecc
Confidence 46677778889999999999987644333333333211 111111223455778998888777642
Q ss_pred --c--CCC----eEEEEE--CCEEccC--CCc-----eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 338 --K--PMP----EIVWFH--EGKELQQ--TDR-----ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 338 --~--p~~----~i~W~~--~~~~~~~--~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
. ..| .+.|+. .|+..+. ... .-+.+..++ .|.-......|...|+|.+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 3shs_A 213 VGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG-----HLFKESATYDDTAKFWCVAKLY 280 (304)
T ss_dssp CSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTS-----CEEESSCCGGGCEEEEEEEEEE
T ss_pred ccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCc-----ceeecccccccchheeeHHHHH
Confidence 1 233 357874 2321110 000 011223333 4666777888999999998653
No 356
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.63 E-value=1.1e-15 Score=138.59 Aligned_cols=181 Identities=12% Similarity=0.190 Sum_probs=100.4
Q ss_pred eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670 216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
...+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ...++.+.... ......|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v 86 (257)
T 3bn9_D 9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN--SKNTLYLQMSSL 86 (257)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEET--TTTEEEEEEESC
T ss_pred CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecC--CCCEEEEEECCC
Confidence 45678899999999998765 5789999853 1110 01222222221 112347999999
Q ss_pred CCCCcEEEEEEEEcCCCC-------------eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC
Q psy670 275 IGPDSGTYRCNVKNEFGE-------------SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM 340 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~~-------------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~ 340 (540)
+.+|+|.|.|.+.+..+. ......|.|.... ..+|.+........+..|+.++|.|.+.+. |.
T Consensus 87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~---~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~ 163 (257)
T 3bn9_D 87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 163 (257)
T ss_dssp CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC---CBCCEECCCCC-----------CCCEEEEEBSS
T ss_pred ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC---CcCCcEEEecCcccccCCCcEEEEEEEeeEECC
Confidence 999999999999987541 1123456665411 124554433222235679999999999985 77
Q ss_pred C-eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670 341 P-EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403 (540)
Q Consensus 341 ~-~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 403 (540)
+ .|.|++++..+..... ......++. ...+.|.|.....+| |.|+|.|.|..........+
T Consensus 164 pi~v~W~k~g~~~~~~~~-~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i 226 (257)
T 3bn9_D 164 PVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 226 (257)
T ss_dssp CCEEEETTTTCCSSCEEC-CCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEeeCCCcCCcEec-CCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence 7 9999999876422100 000111222 223478888888777 99999999976554433333
No 357
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.63 E-value=3.1e-15 Score=136.83 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=102.8
Q ss_pred ccceeeeCcceeEEeecceeeeeecC--eecc------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670 7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72 (540)
Q Consensus 7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 72 (540)
.+.|.+.|.|.......+.+.|||+. ..+. ...|+.+..... ..+|+|.+++.+|+|.|.
T Consensus 24 ~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~------~~~L~I~~v~~~DsG~Y~ 97 (264)
T 2gjj_A 24 TMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGT------DFTLTIGSVKAEDLAVYY 97 (264)
T ss_dssp EEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT------EEEEEESSCCGGGCEEEE
T ss_pred EEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCC------EEEEEECCCCHHHCEEEE
Confidence 46698888772000002789999963 2211 135666543222 369999999999999999
Q ss_pred EEEEccCcc-eeeeEEEEEeecCC-------ccccCCC--CCCCC-CCCCccccCCCeEEEEEEEeecCC--CceEEEeC
Q psy670 73 VIAKNKNGE-GSSTVNLNFSEEDG-------KLKVPGG--KAPRF-PKKPTIHQDGDLLVMECVLEASPM--PDIIWYQG 139 (540)
Q Consensus 73 C~~~~~~~~-~~~~~~l~v~~~~~-------~~~i~~~--~~~~~-~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~ 139 (540)
|.+.+..+. ....+.|.|...+. ....... ....+ ......+.+|++++|.|.+.+.+. +.+.|+|+
T Consensus 98 C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~ 177 (264)
T 2gjj_A 98 CQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKK 177 (264)
T ss_dssp EEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred EEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence 999987543 22345677765421 0000000 00001 112346889999999999987764 78999996
Q ss_pred C--Ee---ec----C----------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670 140 T--KV---IE----D----------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185 (540)
Q Consensus 140 ~--~~---~~----~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 185 (540)
. .. +. . ..++.+... ......+|.|.+++.+|+|.|+|.+.|.
T Consensus 178 ~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 178 NSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD---TSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp CTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCCCcEEEEEEeccCcccccCcccCCceEEEEc---CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 3 21 11 0 123333221 1112348999999999999999999985
No 358
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.63 E-value=1.6e-15 Score=134.30 Aligned_cols=174 Identities=17% Similarity=0.292 Sum_probs=103.8
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e-------------cCCCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I-------------EDTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
+..+.+|++++|.|.+.+. +.+.+.|||.. .. + ....++.+.. .....+|.|.++
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v 82 (215)
T 3nl4_H 8 GRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK-----TSTTVDLKITSP 82 (215)
T ss_dssp CCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE-----CSSEEEEEESSC
T ss_pred CEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe-----eCCEEEEEECCC
Confidence 4568899999999999764 35689999832 11 1 0112333322 222347999999
Q ss_pred CCCCCeEEEEEEEcCCce----eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-C-CCeEEEEeC
Q psy670 171 TKDDGGNYRCNACNSIGE----SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-P-RPEVKWFKA 244 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~ 244 (540)
+.+|+|.|.|.+.+..+. ....+.|.|.... ..+|.+...+....+..|+.++|.|.+.+. | ...+.|+++
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~ 159 (215)
T 3nl4_H 83 TTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQ---PKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSG 159 (215)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSC---CBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CcccCEEEEEEEecCCCccceEEcCCEEEEEeCCC---cCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeC
Confidence 999999999999987542 2333456665321 125555433333456679999999999885 3 346889998
Q ss_pred CEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670 245 DKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNEFGESNANLN 298 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 298 (540)
+..+........ . ...+.+. +.+.+. ..| |.|+|.|.|..+.......
T Consensus 160 g~~~~~~~~~~~-~-~~~g~~~~~s~l~v~---~~d-g~ytC~v~~~~~~~~~~~~ 209 (215)
T 3nl4_H 160 TLTNGVRTFPSV-R-QSSGLYSLSSVVSVT---SSS-QPVTCNVAHPATNTKVDKT 209 (215)
T ss_dssp TBCTTEEECCCE-E-CTTSCEEEEEEEEEC---C----CCEEEEEEGGGTEEEEEE
T ss_pred CEECCeEecCce-E-CCCCCEEEEEEEEEe---ccC-CEEEEEEEeCCCCcceEEe
Confidence 875432211111 1 1222222 234443 446 9999999998776544433
No 359
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.63 E-value=3e-15 Score=132.49 Aligned_cols=177 Identities=13% Similarity=0.228 Sum_probs=109.7
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEe---e-------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLV---K-------------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l---~-------------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
+....+.+|++++|.|.+.+.+ .+.+.|+++. ..+ . ...++.+..... .....|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~ 84 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS--KSQVFLKMNS 84 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT--TTEEEEEESS
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC--CceEEEEECC
Confidence 3445678899999999998764 4789999852 211 0 012333322211 1234799999
Q ss_pred CCCCCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEEC
Q psy670 274 PIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHE 348 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~ 348 (540)
++.+|+|.|.|.+.+..+. ......|.|.... ..+|.+...+....+..|+.++|.|.+.+. |.+ .|.|+++
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 161 (215)
T 1c5d_H 85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ---TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSG 161 (215)
T ss_dssp CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC---CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCcccCEEEEEEEecCCcccceEcCCEEEEecCCC---CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccC
Confidence 9999999999999986421 2233566665321 124444432212234679999999999986 877 9999998
Q ss_pred CEEccCCCceEEEEEecCCeeEE--EEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670 349 GKELQQTDRISWNVTLKGDKYHI--RLEVKDPRKEDTGLYKCNIKNFHGELNANL 401 (540)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 401 (540)
|..+....... ...+ +.+.. .|. ....+| |.|+|.|.|..+......
T Consensus 162 g~~~~~~~~~~--~~~~-g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~ 210 (215)
T 1c5d_H 162 ALSSDVHTFPA--VLQS-GLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDK 210 (215)
T ss_dssp TTCCSCCBCCC--EEET-TEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred CccCceEecCc--ccCC-CCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEE
Confidence 86543211111 1112 33322 344 444456 999999999987655443
No 360
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.63 E-value=3e-15 Score=139.15 Aligned_cols=173 Identities=15% Similarity=0.283 Sum_probs=111.4
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. ...++.+.... .....+|.|.+
T Consensus 31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 107 (291)
T 2gki_A 31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK---SSSTAYMELSS 107 (291)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG---GGTEEEEEECS
T ss_pred cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC---CCCEEEEEECc
Confidence 45688999999999998776 5789999952 1110 01233222211 11234899999
Q ss_pred CCCCCCeEEEEEEEcCC-c--ee--EEEEEEEEecC---------cCCCCCCCeeccCCceeecCCCCeEEEEEEecccC
Q psy670 170 PTKDDGGNYRCNACNSI-G--ES--NANIALNFQGG---------ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~-~--~~--~~~~~l~v~~~---------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 235 (540)
++.+|+|.|.|.+.+.. + .. ...+.|.|... ......++.+...+....+.+|++++|.|.+.+.+
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 99999999999999874 2 11 12345666541 00001133455556677788999999999998877
Q ss_pred CC------eEEEEeCC--EE---eec---------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 236 RP------EVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 236 ~~------~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
.+ .+.|+++. .. +.. ..++..... .....|.|.+++.+|+|.|+|.+.+..
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS----GTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEec----CCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 65 89999953 21 110 112222111 112479999999999999999999853
No 361
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.63 E-value=3.2e-15 Score=138.92 Aligned_cols=176 Identities=18% Similarity=0.322 Sum_probs=113.2
Q ss_pred CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEe---e--------------ccCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLV---K--------------ESSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l---~--------------~~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+....+.+|++++|.|.+.+.+ .+.+.|++.. ..+ . ...++...... ......|.|.
T Consensus 29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~ 106 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK--SSSTAYMELS 106 (291)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG--GGTEEEEEEC
T ss_pred CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC--CCCEEEEEEC
Confidence 4456788999999999998866 5789999953 111 0 01122221111 1113479999
Q ss_pred CCCCCCcEEEEEEEEcCC-CCe----eeeEEEEEeec---------cCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc
Q psy670 273 DPIGPDSGTYRCNVKNEF-GES----NANLNLNIEAE---------AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK 338 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~-~~~----~~~~~l~v~~~---------~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~ 338 (540)
+++.+|+|.|.|.+.+.. +.. .....|.|... ..+...++.+...+....+.+|++++|.|.+.+.
T Consensus 107 ~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~ 186 (291)
T 2gki_A 107 SLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQS 186 (291)
T ss_dssp SCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred cCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence 999999999999999864 211 12335555441 0011113445555667788999999999999988
Q ss_pred CCC------eEEEEECC--EEc---cC---------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 339 PMP------EIVWFHEG--KEL---QQ---------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 339 p~~------~i~W~~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
+.+ .+.|++++ ... .. ..++... ..+. ..+|.|.+++.+|+|.|+|.|.|...
T Consensus 187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~a~~~~~ 259 (291)
T 2gki_A 187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--GSGT--DFTLTISSVQAEDLAVYYCKQSYYHM 259 (291)
T ss_dssp CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEE--ecCC--EEEEEECCCCHHHCEEEEEEEccCCc
Confidence 765 89999963 211 10 2233222 1222 33899999999999999999998653
No 362
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.62 E-value=5.7e-14 Score=148.16 Aligned_cols=249 Identities=12% Similarity=0.190 Sum_probs=160.2
Q ss_pred CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCC-CCCCCeEEEEEEEcCCceeEE-EEE
Q psy670 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP-TKDDGGNYRCNACNSIGESNA-NIA 194 (540)
Q Consensus 117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~-~~~ 194 (540)
+.++.|.|.+.|.|.+.+.|.++|..+...... .+.|..+ .....+.|.|.+.+..|.... .+.
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~--------------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~ 156 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRA--------------ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK 156 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSCEEE--------------EEEECCCTTSCEEEEEEEEECSSCCEEEECCBE
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCceeEE--------------EEEEeecCCCceEEEEEEEecCCceEEEEeeEE
Confidence 458999999999999999999998776322111 4556554 233347888877777765422 222
Q ss_pred EEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEE-EE--eCCEEeeccCceEEEEecCCCeEEEEEEE
Q psy670 195 LNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVK-WF--KADKLVKESSKIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 195 l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~i 271 (540)
+.... ...+|.+. .+....+..|+.+.|.|.+.|.|.+.+. |+ ++|..+..... ...........|.|
T Consensus 157 ~~~~~----~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~----~~~~~~~~~~~l~I 227 (731)
T 2v5y_A 157 VLGHP----CTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI----KVTSSRRFIASFNV 227 (731)
T ss_dssp EESSC----CSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEE----EECCSSEEEEEEEE
T ss_pred eeecc----cccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccce----EEeccccceEEEEE
Confidence 22221 12366666 4557788899999999999999999887 88 67766543221 11122233468999
Q ss_pred eCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc----CCC--eEE
Q psy670 272 TDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK----PMP--EIV 344 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~----p~~--~i~ 344 (540)
.++...|.|.|+|.|.|..|. .+....+.|...+.+.. +|.+ . ......+.|.|..... +.. .|.
T Consensus 228 ~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~-~p~~------~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~ 299 (731)
T 2v5y_A 228 VNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA-PPQL------A-SVGATYLWIQLNANSINGDGPIVAREVE 299 (731)
T ss_dssp CSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSS-CCEE------E-EECSSCEEEECCCSSBSSCSCCCEEEEE
T ss_pred cccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCC-Ccce------e-ccCCceEEEEeCCcccCCCCccEEEEEE
Confidence 999999999999999999987 66667788776433211 2222 2 2245678888875321 112 466
Q ss_pred EEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE--cCCeeeEEEEEEEEE
Q psy670 345 WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK--NFHGELNANLTLNIE 406 (540)
Q Consensus 345 W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~V~ 406 (540)
|...+. ........... .+.|.++...+...|+|.|. |..|....+..+.+.
T Consensus 300 ~~~~~~------~~~~~~~~~~~----~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~ 353 (731)
T 2v5y_A 300 YCTASG------SWNDRQPVDST----SYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTR 353 (731)
T ss_dssp EEESSS------SCEEEEECCSS----EEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEE
T ss_pred EEECCC------CceEEeccCcc----eEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEee
Confidence 655421 11111111111 78899998888888889999 988876544434443
No 363
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.61 E-value=2.7e-15 Score=132.94 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=105.8
Q ss_pred CceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EEe--e--------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670 214 PRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KLV--K--------------ESSKIKIIVNEQDDTYEIICEITD 273 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~l--~--------------~~~~~~~~~~~~~~~~~~~l~i~~ 273 (540)
+....+.+|++++|.|.+.+. +.+.+.|++.. ... . ...++.+.. ......|.|.+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~ 81 (215)
T 3nl4_H 6 SGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK----TSTTVDLKITS 81 (215)
T ss_dssp ECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE----CSSEEEEEESS
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe----eCCEEEEEECC
Confidence 345567889999999999763 46689999732 111 0 012222221 12234799999
Q ss_pred CCCCCcEEEEEEEEcCCCC----eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEE
Q psy670 274 PIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFH 347 (540)
Q Consensus 274 ~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~ 347 (540)
++.+|+|.|.|.+.+..+. ......+.|.... ..+|.+...+....+..|+.++|.|.+.+.++ ..+.|++
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~ 158 (215)
T 3nl4_H 82 PTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQ---PKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNS 158 (215)
T ss_dssp CCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSC---CBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGG
T ss_pred CCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCC---cCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEee
Confidence 9999999999999987553 2333456665311 12555553332334567999999999998643 3678999
Q ss_pred CCEEccCCCceEEEEEecCCee-EEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 348 EGKELQQTDRISWNVTLKGDKY-HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
+|..+........ ...++... .+.|.+. ..| |.|+|.|.|..+.......|.
T Consensus 159 ~g~~~~~~~~~~~-~~~~g~~~~~s~l~v~---~~d-g~ytC~v~~~~~~~~~~~~l~ 211 (215)
T 3nl4_H 159 GTLTNGVRTFPSV-RQSSGLYSLSSVVSVT---SSS-QPVTCNVAHPATNTKVDKTVA 211 (215)
T ss_dssp GTBCTTEEECCCE-ECTTSCEEEEEEEEEC---C----CCEEEEEEGGGTEEEEEECC
T ss_pred CCEECCeEecCce-ECCCCCEEEEEEEEEe---ccC-CEEEEEEEeCCCCcceEEecC
Confidence 9875532111111 11122211 1234444 446 999999999988766665554
No 364
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.61 E-value=3.8e-15 Score=153.14 Aligned_cols=168 Identities=17% Similarity=0.220 Sum_probs=118.0
Q ss_pred ccccCCCeEEEEEEE-eecCCCceEEEeCCEeecC------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670 112 TIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIED------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY 178 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 178 (540)
..+.+|++++|.|.+ .+.|.+.+.|+|++..+.. ..+..+. .+. +|.|.+++.+|+|.|
T Consensus 376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~---~L~i~~v~~~D~G~Y 447 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL-----PNG---SLFLPAVGIQDEGIF 447 (581)
T ss_dssp EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC-----TTS---CEEESSCCGGGCEEE
T ss_pred cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc-----CCc---eEEEeccccccCeEE
Confidence 456789999999999 7888899999998653211 1122111 111 799999999999999
Q ss_pred EEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCce-E
Q psy670 179 RCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKI-K 255 (540)
Q Consensus 179 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~-~ 255 (540)
+|.+.+..+.. ...+.|.|...+. .|.+...... ....+..+.|.|.+.+ +|.+.++|++++..+...... .
T Consensus 448 ~C~~~n~~~~~~~~~~~l~V~~~~~----~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~ 522 (581)
T 3o3u_N 448 RCQAMNRNGKETKSNYRVRVYQIPG----KPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVS 522 (581)
T ss_dssp EEEEECTTSCEEEEEEEEEEEBCCC----CCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEE
T ss_pred EEEEEcCCCceeEEEEEEEEEcCCC----CCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEE
Confidence 99999988876 7778888876432 4444333332 3333445577999988 699999999999998754322 1
Q ss_pred E----EE--ecCCCeEEEEEEEeCCC-CCCcEEEEEEEEcCCCC
Q psy670 256 I----IV--NEQDDTYEIICEITDPI-GPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 256 ~----~~--~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~ 292 (540)
+ .. ..+.....++|.|.+++ .++.|.|+|.+.|....
T Consensus 523 ~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 523 VKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred EEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 1 11 11223445689999988 55588999999998643
No 365
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=136.39 Aligned_cols=187 Identities=14% Similarity=0.281 Sum_probs=115.5
Q ss_pred CceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EEee----c-------------cCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KLVK----E-------------SSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~l~----~-------------~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+....+.+|++++|.|.+.+. +.+.+.|++.. .... . ..++.+.... ......|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~ 84 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQ--STRTAYMDLR 84 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEET--TTTEEEEEEC
T ss_pred CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeC--CCCEEEEEEC
Confidence 566778899999999999874 56789999742 1100 0 0123222221 1222479999
Q ss_pred CCCCCCcEEEEEEEEcC---------CCCeeeeEEEEEeeccC--------CCCCCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670 273 DPIGPDSGTYRCNVKNE---------FGESNANLNLNIEAEAE--------PEGDPPTFIEKPKIRSEQGGKLVVMECKV 335 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~---------~~~~~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~ 335 (540)
+++.+|+|.|.|.+.+. .........|.|...+. ....++.+...+. ..+.+|++++|.|.+
T Consensus 85 ~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~ 163 (280)
T 3fku_X 85 SLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTG 163 (280)
T ss_dssp SCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEEC
T ss_pred CCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEe
Confidence 99999999999999886 11122334455543000 0011334444444 778899999999999
Q ss_pred Ec-cC-CCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee---
Q psy670 336 KA-KP-MPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE--- 396 (540)
Q Consensus 336 ~~-~p-~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--- 396 (540)
.+ .+ .+.+.|++. +..+. ...++... .++. ...|.|.+++.+|+|.|.|.+.|..+.
T Consensus 164 ~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~ 239 (280)
T 3fku_X 164 NSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSAS--RSGN--TASLTITGLQPEDEADYYCSTWDSSLSAVV 239 (280)
T ss_dssp CCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEE--EETT--EEEEEECSCCGGGCSEEEEEEEETTTTEEE
T ss_pred cCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEE--ccCC--EEEEEECCCCHHHCEEEEEEEecCCCCceE
Confidence 87 44 378999883 22111 11233322 2222 347999999999999999999987621
Q ss_pred eEEEEEEEEEE
Q psy670 397 LNANLTLNIEM 407 (540)
Q Consensus 397 ~~~~~~l~V~~ 407 (540)
......|.|..
T Consensus 240 ~g~~t~l~V~~ 250 (280)
T 3fku_X 240 FGGGTKLTVLG 250 (280)
T ss_dssp EBCCCEEEEC-
T ss_pred ECCCEEEEECC
Confidence 22334566644
No 366
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.5e-15 Score=129.36 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=119.7
Q ss_pred ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC--ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.... ++.+... .....|.|.++..+|+|.|+|.+.|..|..
T Consensus 28 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 102 (215)
T 3mtr_A 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT-----PSASYLEVTPDSENDFGNYNCTAVNRIGQE 102 (215)
T ss_dssp EEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEE-----TTEEEEEECCCSGGGCEEEEEEEECSSCEE
T ss_pred EEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecC-----CCeeEEEEecCChhhCeEEEEEEEECCCce
Confidence 567899999999999999999999999999987653 3333221 113489999999999999999999999998
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc----cCCC--eEEEEeCCEEeeccCceEEEEecCCC
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA----KPRP--EVKWFKADKLVKESSKIKIIVNEQDD 263 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~ 263 (540)
...+.|.|...+. +|.... . ...+..+.|.|.... .|.. .+.|.+++........ ......
T Consensus 103 ~~~~~l~v~~~P~----~p~~~~----~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~--~~~~~~-- 169 (215)
T 3mtr_A 103 SLEFILVQADTPS----SPSIDQ----V-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKW--YDAKEA-- 169 (215)
T ss_dssp EEEEEEEECCCCC----CCEEEE----E-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEE--EEHHHH--
T ss_pred EEEEEEEECCCCC----CCcceE----E-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccc--cccccc--
Confidence 8888888876332 222211 1 124677899998532 2322 4788887653211100 000000
Q ss_pred eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 264 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
.....+.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus 170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 208 (215)
T ss_dssp HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence 000268999999999999999999999876555444443
No 367
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.60 E-value=7.1e-15 Score=132.32 Aligned_cols=183 Identities=15% Similarity=0.244 Sum_probs=112.2
Q ss_pred CccccCCCeEEEEEEEeecCC----CceEEEeCC--Ee---e---c----------------CCCceEEEEeecCcceEE
Q psy670 111 PTIHQDGDLLVMECVLEASPM----PDIIWYQGT--KV---I---E----------------DTGRIKMSKKSIGKDTYL 162 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~~--~~---~---~----------------~~~~~~~~~~~~~~~~~~ 162 (540)
...+.+|++++|.|.+.+.+. ..+.|||.. .. + . ...++.+.... ....
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~ 85 (239)
T 3tv3_H 9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDT---PKNL 85 (239)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEG---GGTE
T ss_pred CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEEC---CCCE
Confidence 456889999999999977653 489999832 11 1 1 01233332221 1223
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCc-------------eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEE
Q psy670 163 LRLEINNPTKDDGGNYRCNACNSIG-------------ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKC 229 (540)
Q Consensus 163 ~~L~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C 229 (540)
++|.|.+++.+|+|.|.|.+.+..+ .......|.|.... ..+|.+...+....+..|+.+.|.|
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C 162 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGC 162 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCCCC--TTEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC---CcCCEEEEECCChhhccCCcEEEEE
Confidence 5799999999999999999986531 11223455665311 1255555334444455799999999
Q ss_pred Eecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670 230 KCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300 (540)
Q Consensus 230 ~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 300 (540)
.+.+ +|.+ .+.|++++..+...........+......+.|.|.....+| |.|+|.+.|..+.......+.
T Consensus 163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~ 234 (239)
T 3tv3_H 163 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE 234 (239)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred EEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence 9988 5544 58999988643221111111111222334578899988888 999999999876554444443
No 368
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=138.15 Aligned_cols=150 Identities=15% Similarity=0.227 Sum_probs=85.2
Q ss_pred CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc---C-C-------------CceEEEEEecCCeeEEE
Q psy670 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ---Q-T-------------DRISWNVTLKGDKYHIR 372 (540)
Q Consensus 312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~---~-~-------------~~~~~~~~~~~~~~~~~ 372 (540)
|.+...+....+.+|++++|.|.+.+.+.+.+.|++. +.... . . .+.... ........+
T Consensus 3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~ 80 (259)
T 3omz_A 3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDT--YGSTRKNLR 80 (259)
T ss_dssp --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEE--ECC--CCCE
T ss_pred cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEe--ecCCCCeEE
Confidence 3444456677889999999999999988889999982 11110 0 0 011100 011112237
Q ss_pred EEEcCCCCCCCeeEEEEEEcCCe---eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceee
Q psy670 373 LEVKDPRKEDTGLYKCNIKNFHG---ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVL 449 (540)
Q Consensus 373 L~i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (540)
|.|.+++.+|+|.|.|.+.|..+ .......|.|...+...... .....
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~-----------------------------~~~~~ 131 (259)
T 3omz_A 81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA-----------------------------KKDAA 131 (259)
T ss_dssp EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------------------------------
T ss_pred EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCcccc-----------------------------ccccc
Confidence 99999999999999999999765 33444556665411000000 00000
Q ss_pred eeeeeceeecCCcEEEecCCCeEEEEEEEeee-cCCceEEEecC
Q psy670 450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEK 492 (540)
Q Consensus 450 ~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~-p~~~v~W~~~~ 492 (540)
.....|.+...+....+.+|++++|.|.+.+. |.+.+.|||++
T Consensus 132 ~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 175 (259)
T 3omz_A 132 KKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRL 175 (259)
T ss_dssp -----CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEEC
T ss_pred cccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeC
Confidence 00114567777778889999999999999875 77899999853
No 369
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.60 E-value=9.3e-15 Score=134.18 Aligned_cols=172 Identities=16% Similarity=0.224 Sum_probs=105.8
Q ss_pred CccccCCCeEEEEEEEeecC-----CCceEEEeCC--Ee---ec---------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEASP-----MPDIIWYQGT--KV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p-----~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
...+.+|++++|.|.+.+.+ .+.+.|+|++ .. +. ...++.... .....+|.|.+++
T Consensus 24 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~ 98 (268)
T 1x9q_A 24 SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG-----SGTDFTLKINRVE 98 (268)
T ss_dssp EECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCC
T ss_pred eEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc-----CCCEEEEEECCCC
Confidence 34678999999999997776 4789999852 21 11 123333321 1123489999999
Q ss_pred CCCCeEEEEEEEcCCce-eEEEEEEEEecCcCC--CCCCCe--------------eccCCceeecCCCCeEEEEEEeccc
Q psy670 172 KDDGGNYRCNACNSIGE-SNANIALNFQGGENG--AGFAPS--------------FIEKPRIIPNESGTLIQMKCKCSAK 234 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~--~~~~p~--------------~~~~~~~~~~~~g~~~~l~C~~~~~ 234 (540)
.+|+|.|.|.+.+..+. ....+.|.|...+.. +.++|. ....+....+.+|++++|.|.+.+.
T Consensus 99 ~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~ 178 (268)
T 1x9q_A 99 AEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGF 178 (268)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESS
T ss_pred hhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCc
Confidence 99999999999987542 223345555542210 001111 1222345678899999999999886
Q ss_pred CC--CeEEEEeC--CEEee-------------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670 235 PR--PEVKWFKA--DKLVK-------------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289 (540)
Q Consensus 235 p~--~~v~W~~~--~~~l~-------------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 289 (540)
+. +.+.|+++ +..+. ...++...... ......|.|.+++.+|+|.|+|.+.+.
T Consensus 179 ~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 179 TFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD--SKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp CGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred cccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC--CCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 53 78999985 22210 01122222111 111247999999999999999999874
No 370
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=135.39 Aligned_cols=179 Identities=15% Similarity=0.233 Sum_probs=109.8
Q ss_pred CCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE---eec--cCce---------EEEEecCCCeEEEEEEEeCCCC
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL---VKE--SSKI---------KIIVNEQDDTYEIICEITDPIG 276 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---l~~--~~~~---------~~~~~~~~~~~~~~l~i~~~~~ 276 (540)
.+..+.+.+|++++|.|.+.+.+.+.+.|++. +.. +.. .... ++......... |.|.+++.
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~---L~I~~v~~ 83 (253)
T 3to4_D 7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE---LRLQVANM 83 (253)
T ss_dssp ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC---CEEEEESC
T ss_pred CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe---EEEccCCh
Confidence 35567788999999999998888889999982 111 100 0000 11111111111 99999999
Q ss_pred CCcEEEEEEEEcCCC------CeeeeEEEEEeeccCCCCCCCeEEeC-CceEEeeCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy670 277 PDSGTYRCNVKNEFG------ESNANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKA-KPMP-EIVWFH 347 (540)
Q Consensus 277 ~d~g~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~ 347 (540)
+|+|.|.|.+.+..+ .......+.|...... ..+|.+... +....+..|+.++|.|.+.+ .|.+ .+.|++
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k 162 (253)
T 3to4_D 84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 162 (253)
T ss_dssp SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTT-CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCC-CCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence 999999999987543 1122345666532111 124444322 22222335789999999998 6666 899999
Q ss_pred CCEEccCCCceEEEE-E-----ecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCe
Q psy670 348 EGKELQQTDRISWNV-T-----LKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHG 395 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~-~-----~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g 395 (540)
+|..+.......... . .++. ...+.|.|.....+| .|.|+|.|.|...
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l 218 (253)
T 3to4_D 163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (253)
T ss_dssp TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence 999886532211000 0 1221 123478888877777 7799999999754
No 371
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.59 E-value=9.1e-15 Score=131.11 Aligned_cols=183 Identities=15% Similarity=0.249 Sum_probs=108.6
Q ss_pred CccccCCCeEEEEEEEeecC--CCce--EEEeCC--E---ee-----cC-----------CCceEEEEeecCcceEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDI--IWYQGT--K---VI-----ED-----------TGRIKMSKKSIGKDTYLLRL 165 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v--~W~~~~--~---~~-----~~-----------~~~~~~~~~~~~~~~~~~~L 165 (540)
+..+.+|++++|.|.+.+.+ ...+ .|||.. . .+ .. ..++.+.... ....++|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL 85 (232)
T 3qhz_H 9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDT---SKSQVVL 85 (232)
T ss_dssp CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEET---TTTEEEE
T ss_pred CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEecc---CCCEEEE
Confidence 35688999999999997532 3455 999832 1 11 00 1234333221 1223589
Q ss_pred EEcCCCCCCCeEEEEEEEcCC--------ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-
Q psy670 166 EINNPTKDDGGNYRCNACNSI--------GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP- 235 (540)
Q Consensus 166 ~i~~~~~~d~G~Y~C~~~~~~--------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p- 235 (540)
.|.+++.+|+|.|.|.+.+.. ........|.|.... ..+|.+...+....+..|+.++|.|.+.+ .|
T Consensus 86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~ 162 (232)
T 3qhz_H 86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 162 (232)
T ss_dssp EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC---CBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC---CCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence 999999999999999998753 112233456665311 12555543333334557999999999987 44
Q ss_pred CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300 (540)
Q Consensus 236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 300 (540)
...+.|++++..+...........+......+.|.|......| |.|+|.+.|..+.......+.
T Consensus 163 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~ 226 (232)
T 3qhz_H 163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE 226 (232)
T ss_dssp CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred CeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeC
Confidence 3468899988643211111111111222333578899888888 999999999876655554444
No 372
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=132.15 Aligned_cols=172 Identities=15% Similarity=0.308 Sum_probs=109.5
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+. +.+.+.|+|.. .... ...++.+..+. .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (280)
T 3fku_X 9 AEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQ---STRTAYMDLRS 85 (280)
T ss_dssp CCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEET---TTTEEEEEECS
T ss_pred CEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeC---CCCEEEEEECC
Confidence 4568899999999999765 55789999842 1110 01233332211 12234899999
Q ss_pred CCCCCCeEEEEEEEcC---------CceeEEEEEEEEecCcC--------CCCCCCeeccCCceeecCCCCeEEEEEEec
Q psy670 170 PTKDDGGNYRCNACNS---------IGESNANIALNFQGGEN--------GAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~---------~~~~~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 232 (540)
++.+|+|.|.|.+.+. .........|.|...+. ....++.+...+. ..+.+|++++|.|.+.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~ 164 (280)
T 3fku_X 86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGN 164 (280)
T ss_dssp CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECC
T ss_pred CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEec
Confidence 9999999999999886 11222344566653000 0011344555555 7888999999999998
Q ss_pred c-cC-CCeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670 233 A-KP-RPEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290 (540)
Q Consensus 233 ~-~p-~~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 290 (540)
+ .+ .+.+.|++. +..+. ...++..... . ....|.|.+++.+|+|.|.|.+.+..
T Consensus 165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRS--G--NTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEE--T--TEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEcc--C--CEEEEEECCCCHHHCEEEEEEEecCC
Confidence 7 44 478999983 22211 0122222211 1 12469999999999999999999865
No 373
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=138.03 Aligned_cols=187 Identities=16% Similarity=0.260 Sum_probs=117.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEI 267 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~ 267 (540)
.+.+...+..+.+.+|++++|.|.+.+.+.+.+.|++++ .... ...++.+... .....
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~ 100 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA---SLTLS 100 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC---SSSEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC---CCCEE
Confidence 344555567788889999999999988888899999853 1100 0122222221 12235
Q ss_pred EEEEeCCCCCCcEEEEEEEEcCCC----C--eeeeEEEEEeeccCCCCCCCeEEeC-CceEEeeCCCeEEEEEEEEcc-C
Q psy670 268 ICEITDPIGPDSGTYRCNVKNEFG----E--SNANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKAK-P 339 (540)
Q Consensus 268 ~l~i~~~~~~d~g~y~C~~~~~~~----~--~~~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~~-p 339 (540)
.|.|.+++.+|+|.|.|.+.+..+ . ......+.|...... ..+|.+... +....+.+|+.++|.|.+.+. |
T Consensus 101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P 179 (279)
T 2wbj_D 101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYP 179 (279)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGG-CBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred EEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCC-CCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence 899999999999999999998421 1 122345666542110 114444322 222234468999999999986 4
Q ss_pred C-CeEEEEECCEEccCCCceE---EE-E--EecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCeee
Q psy670 340 M-PEIVWFHEGKELQQTDRIS---WN-V--TLKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHGEL 397 (540)
Q Consensus 340 ~-~~i~W~~~~~~~~~~~~~~---~~-~--~~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~ 397 (540)
. +.|.|+++|..+....... .. . ..++. ...+.|.|......| .|.|+|.|.|.....
T Consensus 180 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 180 DHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp SCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred CCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 3 6999999999886542110 00 0 01222 223468888877764 678999999976543
No 374
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=140.26 Aligned_cols=175 Identities=12% Similarity=0.127 Sum_probs=113.2
Q ss_pred ccCCCeEEEEEEEeec---CC-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 114 HQDGDLLVMECVLEAS---PM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 114 v~~G~~v~l~C~~~~~---p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
+.+|++++|.|.+.+. |. ..|.|+|++..+.............+.....+.|.|..++.+|+|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999887 33 2699999986653221111111111223344589999999999999999999876643
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-C-CCeEEEEeCCEEeeccCceEEEEec-CCCeEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-P-RPEVKWFKADKLVKESSKIKIIVNE-QDDTYE 266 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~~~ 266 (540)
.....+.+.. ....+|.+...+.......|+.++|.|.+.++ | ...|+|+++|..+............ ......
T Consensus 260 ~~~~~v~~~~---~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~ 336 (376)
T 2aty_A 260 PIEKTISKTK---GRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVY 336 (376)
T ss_pred ceEEEEcCCC---CCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEE
Confidence 2222332210 11236666555554444568999999999984 4 4589999999887443222211111 122334
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
+.|.|.....+|.|.|+|.|.|...
T Consensus 337 s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 337 SKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred EEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 5677877777789999999998754
No 375
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.58 E-value=8.3e-15 Score=131.91 Aligned_cols=178 Identities=15% Similarity=0.272 Sum_probs=109.2
Q ss_pred CCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EE---ee---c---------cCceEEEEecCCCeEEEEEEEeCCC
Q psy670 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KL---VK---E---------SSKIKIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---l~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~ 275 (540)
.+..+.+.+|+.++|.|.+. .+.+.+.|++.+ .. +. . ..++.+... ......|.|.+++
T Consensus 5 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~L~I~~v~ 80 (238)
T 1bec_A 5 SPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP---SQEQFSLILELAT 80 (238)
T ss_dssp ECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC---SSSEEEEEESSCC
T ss_pred CCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec---CCCEEEEEEecCC
Confidence 45567788999999999985 457789999853 11 10 0 112211110 1223589999999
Q ss_pred CCCcEEEEEEEEcCCC---C--eeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy670 276 GPDSGTYRCNVKNEFG---E--SNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFH 347 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~---~--~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~ 347 (540)
.+|+|.|.|.+.+..+ . ......|.|...... ..+|.+.. .+....+..|+.++|.|.+.|. |.+ .+.|++
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 159 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQ-VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGG-CBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCC-CCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence 9999999999998642 1 122345666542110 11444433 3333345579999999999985 655 899999
Q ss_pred CCEEccCCCceE-EEEEecCCee--EEEEEEcCCCCCC-CeeEEEEEEcCCe
Q psy670 348 EGKELQQTDRIS-WNVTLKGDKY--HIRLEVKDPRKED-TGLYKCNIKNFHG 395 (540)
Q Consensus 348 ~~~~~~~~~~~~-~~~~~~~~~~--~~~L~i~~~~~~d-~G~Y~C~a~n~~g 395 (540)
+|..+....... ......++.+ .+.|.|......| .|.|+|.|.|...
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 999886543211 0011122222 2345555444444 6789999999753
No 376
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.58 E-value=7.7e-15 Score=132.61 Aligned_cols=183 Identities=15% Similarity=0.218 Sum_probs=110.2
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeC--CEe---e---c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQG--TKV---I---E-----------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~--~~~---~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
+..+.+|++++|.|.+.+. +...+.|||. +.. + . ...++.+..+. ....++|.|.+
T Consensus 8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 84 (248)
T 3u2s_H 8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDN---SKDTLYLQMNS 84 (248)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEG---GGTEEEEEECS
T ss_pred CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC---CCCEEEEEECC
Confidence 4678899999999999752 3458999983 211 1 0 11344443321 12245899999
Q ss_pred CCCCCCeEEEEEEEcCC----------------------ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEE
Q psy670 170 PTKDDGGNYRCNACNSI----------------------GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQM 227 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~----------------------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l 227 (540)
++.+|+|.|.|.+.+.. ........|.|.... ..+|.+...+....+..|+.++|
T Consensus 85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~~~L 161 (248)
T 3u2s_H 85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS---TKGPSVFPLAPSSKSTSGGTAAL 161 (248)
T ss_dssp CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC---CBCCEEEEECCC------CEEEE
T ss_pred CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC---CCCCEEEEeCCCccccCCCcEEE
Confidence 99999999999998642 111223456665311 12555543333334456999999
Q ss_pred EEEecc-cC-CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670 228 KCKCSA-KP-RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300 (540)
Q Consensus 228 ~C~~~~-~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 300 (540)
.|.+.+ +| ...+.|++++..+...........+......+.|.|.....++ |.|+|.+.|..+.......+.
T Consensus 162 ~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~ 235 (248)
T 3u2s_H 162 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE 235 (248)
T ss_dssp EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred EEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence 999987 55 4579999988643211111111111222333578888888888 999999999876655444443
No 377
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.58 E-value=1.3e-14 Score=149.20 Aligned_cols=168 Identities=18% Similarity=0.302 Sum_probs=116.4
Q ss_pred eeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEE
Q psy670 216 IIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTY 282 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 282 (540)
...+.+|++++|.|.+ .+.|.+.+.|++++..+.. ..+... . .. .+|.|.+++.+|+|.|
T Consensus 375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~--~-~~----~~L~i~~v~~~D~G~Y 447 (581)
T 3o3u_N 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV--L-PN----GSLFLPAVGIQDEGIF 447 (581)
T ss_dssp EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE--C-TT----SCEEESSCCGGGCEEE
T ss_pred ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE--c-CC----ceEEEeccccccCeEE
Confidence 3566789999999999 7788999999998653211 111111 1 11 1699999999999999
Q ss_pred EEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC-CeEEEEEEEEc-cCCCeEEEEECCEEccCCCc-e
Q psy670 283 RCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG-KLVVMECKVKA-KPMPEIVWFHEGKELQQTDR-I 358 (540)
Q Consensus 283 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g-~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~-~ 358 (540)
+|.+.+..+.. ...+.|.|...+. .|.+..... . +..+ ..+.|+|.+.+ +|.+.|+|+++|..+..... .
T Consensus 448 ~C~~~n~~~~~~~~~~~l~V~~~~~----~p~i~~~~~-~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~ 521 (581)
T 3o3u_N 448 RCQAMNRNGKETKSNYRVRVYQIPG----KPEIVDSAS-E-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGV 521 (581)
T ss_dssp EEEEECTTSCEEEEEEEEEEEBCCC----CCEEESCCS-E-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTE
T ss_pred EEEEEcCCCceeEEEEEEEEEcCCC----CCEEEcCCc-c-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeE
Confidence 99999988876 6677788766432 344433322 2 4444 44567999998 69999999999999875433 2
Q ss_pred EE--EEEe--cCCe--eEEEEEEcCCC-CCCCeeEEEEEEcCCee
Q psy670 359 SW--NVTL--KGDK--YHIRLEVKDPR-KEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 359 ~~--~~~~--~~~~--~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~ 396 (540)
.. .... +.+. ..++|.|..++ ..+.|.|+|.|+|..+.
T Consensus 522 ~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 522 SVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred EEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 22 1111 2222 34589999988 44588999999998643
No 378
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.58 E-value=3e-15 Score=134.29 Aligned_cols=183 Identities=12% Similarity=0.182 Sum_probs=108.7
Q ss_pred eeecCCCCeEEEEEEeccc--CCCe--EEEEeCC--E---Eee----c------------cCceEEEEecCCCeEEEEEE
Q psy670 216 IIPNESGTLIQMKCKCSAK--PRPE--VKWFKAD--K---LVK----E------------SSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~--p~~~--v~W~~~~--~---~l~----~------------~~~~~~~~~~~~~~~~~~l~ 270 (540)
...+.+|++++|.|.+.+. .... |.|++.. . .+. . ..++.+.... ......|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~ 86 (232)
T 3qhz_H 9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDT--SKSQVVLT 86 (232)
T ss_dssp CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEET--TTTEEEEE
T ss_pred CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEecc--CCCEEEEE
Confidence 3557789999999999753 2234 4999832 1 110 0 0122222221 12235799
Q ss_pred EeCCCCCCcEEEEEEEEcCC--------CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC--
Q psy670 271 ITDPIGPDSGTYRCNVKNEF--------GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM-- 340 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~~--------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~-- 340 (540)
|.+++.+|+|.|.|.+.+.. ........+.|.... ..+|.+...+....+..|+.++|.|.+.+.++
T Consensus 87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~ 163 (232)
T 3qhz_H 87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 163 (232)
T ss_dssp ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC---CBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC---CCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence 99999999999999998753 112233455654311 22555553333334567999999999998543
Q ss_pred CeEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 341 PEIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 341 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
..+.|+++|..+........ ...++.. ..+.|.|......| |.|+|.|.|..+.......|.+
T Consensus 164 ~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 164 VTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred eEEEEEECCEecceeeccce-eCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 36889998864321111001 1112221 23478999888888 9999999999877766666654
No 379
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=138.02 Aligned_cols=178 Identities=15% Similarity=0.241 Sum_probs=112.2
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINNPT 171 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~ 171 (540)
...+.+|++++|.|.+.+.+.+.+.|+|++ .... ...++.+... .....+|.|.+++
T Consensus 33 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~I~~v~ 108 (279)
T 2wbj_D 33 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA----SLTLSTLTVTSAH 108 (279)
T ss_dssp EEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC----SSSEEEEEESSCC
T ss_pred eEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC----CCCEEEEEEccCC
Confidence 456889999999999987788899999953 1100 0123333321 1234589999999
Q ss_pred CCCCeEEEEEEEcCCc------eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEeccc-CC-CeEEEE
Q psy670 172 KDDGGNYRCNACNSIG------ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAK-PR-PEVKWF 242 (540)
Q Consensus 172 ~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~ 242 (540)
.+|+|.|+|.+.+..+ .....+.|.|..... ...+|.+.. .+....+.+|+.+.|.|.+.+. |. +.|.|+
T Consensus 109 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~ 187 (279)
T 2wbj_D 109 PEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 187 (279)
T ss_dssp GGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGG-GCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEE
T ss_pred ccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCC-CCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEE
Confidence 9999999999998321 112234566654211 012444432 2223334468999999999985 54 689999
Q ss_pred eCCEEeeccCceE--EEE---ecCCC--eEEEEEEEeCCCCC-CcEEEEEEEEcCCCCe
Q psy670 243 KADKLVKESSKIK--IIV---NEQDD--TYEIICEITDPIGP-DSGTYRCNVKNEFGES 293 (540)
Q Consensus 243 ~~~~~l~~~~~~~--~~~---~~~~~--~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~ 293 (540)
+++..+....... ... ....+ ...+.|.|...... +.|.|+|.+.|.....
T Consensus 188 k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 188 VNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp ETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred ECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 9999876432110 000 01222 23346888777765 4679999999975543
No 380
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.57 E-value=5.1e-15 Score=133.29 Aligned_cols=185 Identities=13% Similarity=0.207 Sum_probs=112.9
Q ss_pred ceeecCCCCeEEEEEEecccC----CCeEEEEeCC--E---Ee---e------c----------cCceEEEEecCCCeEE
Q psy670 215 RIIPNESGTLIQMKCKCSAKP----RPEVKWFKAD--K---LV---K------E----------SSKIKIIVNEQDDTYE 266 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~--~---~l---~------~----------~~~~~~~~~~~~~~~~ 266 (540)
..+.+.+|++++|.|.+.+.+ ...+.|++.. . .+ . . ..++.+.... ....
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~ 85 (239)
T 3tv3_H 8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDT--PKNL 85 (239)
T ss_dssp SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEG--GGTE
T ss_pred CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEEC--CCCE
Confidence 345678899999999998755 3489999832 1 11 0 0 1122222211 1223
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCC-------------CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEE
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFG-------------ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMEC 333 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C 333 (540)
..|.|.+++.+|+|.|.|.+.+..+ .......+.|.... ..+|.+...+....+..|+.++|.|
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C 162 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGC 162 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCCCC--TTEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC---CcCCEEEEECCChhhccCCcEEEEE
Confidence 5799999999999999999986532 11222345554211 2255555333333455799999999
Q ss_pred EEEc-cCCC-eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 334 KVKA-KPMP-EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 334 ~~~~-~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.+.+ .|.+ .+.|++++..+........ ...++. ...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 236 (239)
T 3tv3_H 163 LVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 236 (239)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEeeEeCCCeEEEEEECCccCceEecCce-ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence 9998 4544 5899998864422111011 111222 223478899888888 99999999998776666655543
No 381
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.57 E-value=5.7e-14 Score=107.12 Aligned_cols=95 Identities=23% Similarity=0.428 Sum_probs=80.7
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+.......++ ..+|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~ 80 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVK 80 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCCcCCCEEEEEE
Confidence 367777778888899999999999999999999999999999987766554333333 23799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.|..|....++.|.|..
T Consensus 81 a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 81 AINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCcEEEEEEEEEec
Confidence 999999999888888864
No 382
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.57 E-value=1.4e-14 Score=110.30 Aligned_cols=97 Identities=26% Similarity=0.511 Sum_probs=79.5
Q ss_pred CCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 205 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......+....... ..+|.|.+++.+|+|.|+|
T Consensus 3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C 80 (100)
T 3knb_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD--LTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSS--EEEEEESSCCGGGCEEEEE
T ss_pred CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccc--eEEEEEcCCCccCCEEEEE
Confidence 35788888888899999999999999999999999999999998765433222222222 2479999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEee
Q psy670 285 NVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~ 303 (540)
.|.|..|....++.|.|..
T Consensus 81 ~a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 81 SLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCEEEEEEEEEEEE
Confidence 9999999888888888753
No 383
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-14 Score=138.07 Aligned_cols=174 Identities=11% Similarity=0.125 Sum_probs=112.9
Q ss_pred cCCCCeEEEEEEeccc---CC-CeEEEEeCCEEeeccCce-EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 219 NESGTLIQMKCKCSAK---PR-PEVKWFKADKLVKESSKI-KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 219 ~~~g~~~~l~C~~~~~---p~-~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
+..|+.++|.|.+.++ |. ..|.|++++..+...... ............+.|.|..++.+|.|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6689999999999886 32 369999998665322111 001111222334579999999999999999999876643
Q ss_pred eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEEEEEecCC-eeE
Q psy670 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISWNVTLKGD-KYH 370 (540)
Q Consensus 294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~ 370 (540)
.....+.+.. ....+|.+...+.......|+.++|.|.+.|. | ...|.|+++|..+............++. ...
T Consensus 260 ~~~~~v~~~~---~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~ 336 (376)
T 2aty_A 260 PIEKTISKTK---GRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVY 336 (376)
T ss_pred ceEEEEcCCC---CCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEE
Confidence 3322332210 01225666555544444568899999999985 3 4589999999987543222211122332 224
Q ss_pred EEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 371 IRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 371 ~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
+.|.|.....+|.|.|+|.|.|...
T Consensus 337 s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 337 SKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred EEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 4788888778889999999999764
No 384
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.56 E-value=1.6e-14 Score=129.97 Aligned_cols=175 Identities=15% Similarity=0.226 Sum_probs=107.1
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---ec------------CCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---IE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKD 173 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 173 (540)
...+.+|++++|.|.+ ..+.+.+.|+|++ .. +. ...++.+... .....+|.|.+++.+
T Consensus 8 ~v~v~~G~~v~L~C~~-~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~----~~~~~~L~I~~v~~~ 82 (238)
T 1bec_A 8 NKVAVTGGKVTLSCQQ-TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP----SQEQFSLILELATPS 82 (238)
T ss_dssp EEEEETTCCEEEEEEE-SSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC----SSSEEEEEESSCCGG
T ss_pred eeEEeCCCcEEEEEEe-CCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec----CCCEEEEEEecCCcc
Confidence 4568899999999998 4467799999853 11 10 0123322211 122458999999999
Q ss_pred CCeEEEEEEEcCCc-----eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCC
Q psy670 174 DGGNYRCNACNSIG-----ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKAD 245 (540)
Q Consensus 174 d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~ 245 (540)
|+|.|.|.+.+..+ .......|.|..... ...+|.+.. .+....+.+|+.++|.|.+.+. |.+ .+.|+++|
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 161 (238)
T 1bec_A 83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLR-QVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG 161 (238)
T ss_dssp GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGG-GCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETT
T ss_pred cCEEEEEEEecCCCCccccccCCCEEEEEeccCC-CCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECC
Confidence 99999999998631 112234566654211 012444432 3334455679999999999984 655 89999999
Q ss_pred EEeeccCceE-EEEecCCCeE--EEEEEEeCCCCCC-cEEEEEEEEcCCC
Q psy670 246 KLVKESSKIK-IIVNEQDDTY--EIICEITDPIGPD-SGTYRCNVKNEFG 291 (540)
Q Consensus 246 ~~l~~~~~~~-~~~~~~~~~~--~~~l~i~~~~~~d-~g~y~C~~~~~~~ 291 (540)
..+....... .......+.+ .+.|.|......| .|.|+|.+.|...
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 162 KEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp EEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred EECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 9886543211 0011112222 2344554433333 6799999999743
No 385
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.56 E-value=1.8e-14 Score=128.90 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=107.8
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e-c------------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I-E------------DTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~-~------------~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
...+.+|++++|.|.+.+. +...+.|||.. .. + . ...++.+... .....++|.|.++
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v 86 (230)
T 1ypz_F 10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN---PSASTSILTIYSL 86 (230)
T ss_dssp EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC---CTTTEEEEEECSC
T ss_pred EEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEc---CCCCEEEEEECcC
Confidence 4568899999999999764 56789999842 11 1 0 1123332221 1113358999999
Q ss_pred CCCCCeEEEEEEEcC--Cc--eeEEEEEEEEecCcCC----CCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEE
Q psy670 171 TKDDGGNYRCNACNS--IG--ESNANIALNFQGGENG----AGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVK 240 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~--~~--~~~~~~~l~v~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~ 240 (540)
+.+|+|.|.|.+.+. .. .....+.|.|...... ....+.+.. +....+..|+.++|.|.+.++ |. +.|.
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v~ 165 (230)
T 1ypz_F 87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRVY 165 (230)
T ss_dssp CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEEE
T ss_pred ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCeEEE
Confidence 999999999999874 11 1123346667521100 001222222 333345568899999999884 75 5899
Q ss_pred EEe-CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670 241 WFK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293 (540)
Q Consensus 241 W~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 293 (540)
|++ +|..+...........+......+.|.|..... + |.|+|.+.|.....
T Consensus 166 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 166 WKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp EECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred EEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 999 777664322111111112222345788887765 4 89999999976643
No 386
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.56 E-value=3.6e-15 Score=135.64 Aligned_cols=174 Identities=16% Similarity=0.236 Sum_probs=107.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-c-CCC-----------ceEEEEeecCcceEEEEEEEcCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-E-DTG-----------RIKMSKKSIGKDTYLLRLEINNPTK 172 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-~-~~~-----------~~~~~~~~~~~~~~~~~L~i~~~~~ 172 (540)
...+.+|++++|.|.+.+.+.+.+.|||. +.. + . ... ++.+... .. . . |.|.+++.
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~-~--~-L~I~~v~~ 83 (253)
T 3to4_D 10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV--TD-T--E-LRLQVANM 83 (253)
T ss_dssp EEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECC--SS-S--C-CEEEEESC
T ss_pred eEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeC--CC-C--e-EEEccCCh
Confidence 45688999999999988888889999982 111 1 0 000 2211111 00 0 1 99999999
Q ss_pred CCCeEEEEEEEcCCc------eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEecc-cCCC-eEEEEe
Q psy670 173 DDGGNYRCNACNSIG------ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFK 243 (540)
Q Consensus 173 ~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~ 243 (540)
+|+|.|+|.+.+..+ .......|.|..... ...+|.+.. .+....+..|+.++|.|.+.+ +|.+ .+.|++
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k 162 (253)
T 3to4_D 84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 162 (253)
T ss_dssp SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCST-TCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCC-CCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence 999999999986543 122334566653211 112444432 222223335789999999998 6766 899999
Q ss_pred CCEEeeccCceEEEE-------ecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCC
Q psy670 244 ADKLVKESSKIKIIV-------NEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFG 291 (540)
Q Consensus 244 ~~~~l~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~ 291 (540)
+|..+.......... .+......+.|.|.....+| .|.|+|.+.+...
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l 218 (253)
T 3to4_D 163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (253)
T ss_dssp TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence 999886532211000 11112223478888777777 7799999998643
No 387
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.56 E-value=1.2e-14 Score=129.99 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=111.0
Q ss_pred ccCCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EE---ee-------------ccCceEEEEecCCCeEEEEEE
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KL---VK-------------ESSKIKIIVNEQDDTYEIICE 270 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~---l~-------------~~~~~~~~~~~~~~~~~~~l~ 270 (540)
...+..+.+.+|++++|.|.+.+. +...+.|++.. .. +. ...++.+.. ........|.
T Consensus 5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~L~ 82 (230)
T 1ypz_F 5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASK--NPSASTSILT 82 (230)
T ss_dssp ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEE--CCTTTEEEEE
T ss_pred cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEE--cCCCCEEEEE
Confidence 344667778899999999999774 56789999842 11 10 012222221 1222345899
Q ss_pred EeCCCCCCcEEEEEEEEcC--CC--CeeeeEEEEEeeccCC----CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-
Q psy670 271 ITDPIGPDSGTYRCNVKNE--FG--ESNANLNLNIEAEAEP----EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM- 340 (540)
Q Consensus 271 i~~~~~~d~g~y~C~~~~~--~~--~~~~~~~l~v~~~~~~----~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~- 340 (540)
|.+++.+|+|.|.|.+.+. .. .......|.|...... ....+.+.. +....+..|+.++|.|.+.+. |.
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~ 161 (230)
T 1ypz_F 83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDV 161 (230)
T ss_dssp ECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCC
T ss_pred ECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCC
Confidence 9999999999999999874 11 1123346666521100 001222322 333334568899999999986 75
Q ss_pred CeEEEEE-CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 341 PEIVWFH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 341 ~~i~W~~-~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
+.|.|++ +|..+......... ..++. ...+.|.|..... + |.|+|.|.|..+..
T Consensus 162 ~~v~W~~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 162 IRVYWKEKDGNTILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp CEEEEECTTSSCBCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred eEEEEEccCCeEccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 5999999 77766432211111 12222 1235788887765 4 99999999987643
No 388
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.55 E-value=6.9e-14 Score=125.11 Aligned_cols=182 Identities=13% Similarity=0.231 Sum_probs=112.8
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e---c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I---E-----------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+. +...+.|||.. .. + . ...++.+.... .....+|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (230)
T 3n9g_H 9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDT---STSTVYMELSS 85 (230)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC---CCCEEEEEECC
Confidence 3568899999999999653 34579999832 11 1 0 11344433322 12234799999
Q ss_pred CCCCCCeEEEEEEEcCC-----c-e--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CCeE
Q psy670 170 PTKDDGGNYRCNACNSI-----G-E--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RPEV 239 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~-----~-~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v 239 (540)
++.+|+|.|.|.+.+.. + . ......|.|..... .+|.+...+....+..|+.++|.|.+.+ +| ...+
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v 162 (230)
T 3n9g_H 86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV 162 (230)
T ss_dssp CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC---BCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCC---CCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence 99999999999998754 1 1 12334566653221 2455543333334568999999999988 45 4569
Q ss_pred EEEeCCEEeeccCceE--EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 240 KWFKADKLVKESSKIK--IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 240 ~W~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
.| ++..+....... ....+......+.|.|.....+| |.|+|.+.+..+.......+.+
T Consensus 163 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v 223 (230)
T 3n9g_H 163 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 223 (230)
T ss_dssp EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred EE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence 99 554443211110 11111222333579999999999 9999999998766555554444
No 389
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.54 E-value=1.5e-14 Score=130.72 Aligned_cols=186 Identities=13% Similarity=0.195 Sum_probs=110.9
Q ss_pred CceeecCCCCeEEEEEEecc--cCCCeEEEEeCC--EE---e---e-c----------cCceEEEEecCCCeEEEEEEEe
Q psy670 214 PRIIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--KL---V---K-E----------SSKIKIIVNEQDDTYEIICEIT 272 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~---l---~-~----------~~~~~~~~~~~~~~~~~~l~i~ 272 (540)
+..+.+.+|++++|.|.+.+ .+...+.|++.. .. + . . ..++...... ......|.|.
T Consensus 6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~ 83 (248)
T 3u2s_H 6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDN--SKDTLYLQMN 83 (248)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEG--GGTEEEEEEC
T ss_pred CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC--CCCEEEEEEC
Confidence 34566789999999999975 345679999832 11 1 0 0 1222222221 1223579999
Q ss_pred CCCCCCcEEEEEEEEcCC----------------------CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEE
Q psy670 273 DPIGPDSGTYRCNVKNEF----------------------GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVV 330 (540)
Q Consensus 273 ~~~~~d~g~y~C~~~~~~----------------------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~ 330 (540)
+++.+|+|.|.|.+.+.. ........+.|.... ..+|.+...+....+..|+.++
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~~~ 160 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS---TKGPSVFPLAPSSKSTSGGTAA 160 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC---CBCCEEEEECCC------CEEE
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC---CCCCEEEEeCCCccccCCCcEE
Confidence 999999999999998641 111223455554211 1255555333333455799999
Q ss_pred EEEEEEc-cC-CCeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 331 MECKVKA-KP-MPEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 331 l~C~~~~-~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
|.|.+.+ .| ...+.|+++|..+........ ...++. ...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 161 L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 237 (248)
T 3u2s_H 161 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 237 (248)
T ss_dssp EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred EEEEEeeEECCCeEEEEeECCccCceeecCce-ECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence 9999998 45 457999998864321111001 111222 223478888888888 99999999988776666666554
No 390
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.54 E-value=5.7e-14 Score=125.66 Aligned_cols=183 Identities=13% Similarity=0.208 Sum_probs=113.5
Q ss_pred eeecCCCCeEEEEEEecc--cCCCeEEEEeCC--E---Eee--------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670 216 IIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--K---LVK--------------ESSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~---~l~--------------~~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
.+.+.+|++++|.|.+.+ .....+.|++.. . .+. ...++.+.... ......|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v 86 (230)
T 3n9g_H 9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDT--STSTVYMELSSL 86 (230)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEET--TTTEEEEEECSC
T ss_pred CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC--CCCEEEEEECCC
Confidence 466789999999999975 334679999732 1 110 01233332222 223357999999
Q ss_pred CCCCcEEEEEEEEcCCC-----C---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeEE
Q psy670 275 IGPDSGTYRCNVKNEFG-----E---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEIV 344 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~ 344 (540)
+.+|+|.|.|.+.+..+ . ......+.|...+ ..+|.+...+....+..|+.++|.|.+.+. | .+.+.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~ 163 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 163 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC---CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC---CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEE
Confidence 99999999999987531 1 1233455654321 125555533333335689999999999984 4 34689
Q ss_pred EEECCEEccCCCceEE-EEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 345 WFHEGKELQQTDRISW-NVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 345 W~~~~~~~~~~~~~~~-~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
| ++..+........ ....++.. ..+.|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus 164 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 164 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred E--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 9 5554432111000 01112221 23479999999999 99999999998777666666554
No 391
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.54 E-value=1.9e-14 Score=110.82 Aligned_cols=94 Identities=26% Similarity=0.443 Sum_probs=80.8
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.+|.|...+....+.+|+.+.|.|.+.|.|.+.|.|+++|..+....++.+.... ....|.|.+++.+|+|.|+|.
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 87 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG----AEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEET----TEEEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecC----ceEEEEEecCChhhCEEEEEE
Confidence 3778888888889999999999999999999999999999999887766554332 124799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEee
Q psy670 286 VKNEFGESNANLNLNIEA 303 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~ 303 (540)
|.|..|....++.|.|..
T Consensus 88 a~N~~G~~~~~~~l~V~~ 105 (107)
T 3knb_B 88 ARNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCEEEEEEEEEEEc
Confidence 999999888888888765
No 392
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.53 E-value=1e-15 Score=135.32 Aligned_cols=180 Identities=12% Similarity=0.128 Sum_probs=109.7
Q ss_pred ccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
...|....+.+|+.++|.|.+.++++ +.|.| ++..+......... ...........|.|.+++.+|+|.|+|.+
T Consensus 8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~ 85 (214)
T 1ow0_A 8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA 85 (214)
T ss_dssp EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence 34466666778999999999998654 68999 44333211000000 00111224457888888888999999999
Q ss_pred EcCCCCeeeeEEEEEeeccCCCCCCCeEEeC-CceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEE--E
Q psy670 287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISW--N 361 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~--~ 361 (540)
.+..+.......+.+. ....+|.+... +....+..|+.++|.|.+.|. |. +.|.|+++|..+........ .
T Consensus 86 ~~~~~~~~~~~~i~~~----~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~ 161 (214)
T 1ow0_A 86 AYPESKTPLTATLSKS----GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASR 161 (214)
T ss_dssp CCSSCSSCEEEEEECC----SSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCE
T ss_pred ecCCCCCceeEeeccC----CCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCc
Confidence 9876643333333210 11225555332 222235678999999999985 54 49999999998866521111 1
Q ss_pred EE---ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670 362 VT---LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396 (540)
Q Consensus 362 ~~---~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 396 (540)
.. .++. ...+.|.+......+.|.|+|.|.|....
T Consensus 162 ~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 162 QEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp ECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred ccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 11 2222 22345666655555689999999997643
No 393
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.52 E-value=5.9e-14 Score=127.94 Aligned_cols=178 Identities=15% Similarity=0.236 Sum_probs=105.1
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---e-------------cCCCceEEEEeecCcceEEEEEEEcCC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---I-------------EDTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
.+.+.+|++++|.|.+.+.+ ...+.|||.. .. + ....++.+..+. ....++|.|.++
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~v 85 (263)
T 3iu4_H 9 PGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDN---SKSQVFLKMNSL 85 (263)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEG---GGTEEEEEECSC
T ss_pred CEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecC---CCCEEEEEECCC
Confidence 35688999999999997543 4579999832 11 1 012344443322 222458999999
Q ss_pred CCCCCeEEEEEEEcCCc------e--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEE
Q psy670 171 TKDDGGNYRCNACNSIG------E--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVK 240 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~------~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~ 240 (540)
+.+|+|.|.|.+.+..+ . ......|.|..... .+|.+........+..|+.++|.|.+.+ +|. +.+.
T Consensus 86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~---~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~ 162 (263)
T 3iu4_H 86 QTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAAST---KGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVS 162 (263)
T ss_dssp CGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCC---BCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEE
T ss_pred CHHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccC---CCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEE
Confidence 99999999999987531 1 11234566653211 2455543233333457999999999988 453 6799
Q ss_pred EEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670 241 WFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESNANL 297 (540)
Q Consensus 241 W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 297 (540)
| ++..+.............++ ...+.|.|.....+| |.|+|.+.|..+......
T Consensus 163 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~ 218 (263)
T 3iu4_H 163 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK 218 (263)
T ss_dssp E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEE
T ss_pred E--CCcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeE
Confidence 9 44333211100000111222 333578898888888 999999999876544333
No 394
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.51 E-value=3.3e-14 Score=129.13 Aligned_cols=184 Identities=13% Similarity=0.241 Sum_probs=112.8
Q ss_pred eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--E--E-ee------------ccCceEEEEecCCCeEEEEEEE
Q psy670 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--K--L-VK------------ESSKIKIIVNEQDDTYEIICEI 271 (540)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~--~-l~------------~~~~~~~~~~~~~~~~~~~l~i 271 (540)
.+...+..+.+.+|++++|.|.+. .+.+.+.|++.. . . +. ...++..... ......|.|
T Consensus 5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~L~I 80 (252)
T 1oga_E 5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE---KKESFPLTV 80 (252)
T ss_dssp CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS---STTBCCEEE
T ss_pred cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec---CCCEEEEEE
Confidence 345556778888999999999985 457789999853 1 1 10 0112222111 011237999
Q ss_pred eCCCCCCcEEEEEEEEcCC---CCeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670 272 TDPIGPDSGTYRCNVKNEF---GESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PMP-EIVW 345 (540)
Q Consensus 272 ~~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W 345 (540)
.+++.+|+|.|.|.+.+.. ........+.|..... ...+|.+.. .+....+..|+.++|.|.+.+. |.+ .|.|
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W 159 (252)
T 1oga_E 81 TSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 159 (252)
T ss_dssp CSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CcCChhhCEEEEEEEecCCccceeECCCEEEEEecccC-CCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEE
Confidence 9999999999999999862 1112234466653110 012455443 2333334468999999999985 654 8999
Q ss_pred EECCEEccCCCceEEE----E--EecCC-eeEEEEEEcCCCCC-CCeeEEEEEEcCCeee
Q psy670 346 FHEGKELQQTDRISWN----V--TLKGD-KYHIRLEVKDPRKE-DTGLYKCNIKNFHGEL 397 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~----~--~~~~~-~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~ 397 (540)
+++|..+......... . ..++. ...+.|.|...... |.|.|+|.|.|.....
T Consensus 160 ~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 219 (252)
T 1oga_E 160 WVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 219 (252)
T ss_dssp EETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 9999987653221000 0 01122 22346888766554 5788999999986543
No 395
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.51 E-value=2.7e-13 Score=104.21 Aligned_cols=93 Identities=26% Similarity=0.494 Sum_probs=79.8
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++... ..+. ..+|.|.++..+|+|.|+|.|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~--~~~~--~~~L~i~~~~~~D~G~Y~C~a 83 (103)
T 3qp3_A 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT--NTSG--VLTLEILDCHTDDSGTYRAVC 83 (103)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE--EETT--EEEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEE--ECCC--EEEEEEcCCCcccCEEEEEEE
Confidence 667777778888999999999999999999999999999999877765443 2222 237999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|..
T Consensus 84 ~N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 84 TNYKGEASDYATLDVTG 100 (103)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEEEEEEEEEEC
Confidence 99999999999998875
No 396
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.50 E-value=2.7e-14 Score=130.20 Aligned_cols=181 Identities=13% Similarity=0.190 Sum_probs=105.1
Q ss_pred eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---ee-------------ccCceEEEEecCCCeEEEEEEEeCCC
Q psy670 216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VK-------------ESSKIKIIVNEQDDTYEIICEITDPI 275 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~ 275 (540)
.+.+.+|++++|.|.+.+.+ ...+.|++.. .. +. ...++.+.... ......|.|.+++
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v~ 86 (263)
T 3iu4_H 9 PGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDN--SKSQVFLKMNSLQ 86 (263)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEG--GGTEEEEEECSCC
T ss_pred CEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecC--CCCEEEEEECCCC
Confidence 45678899999999997633 4679999732 11 10 01222222221 1223579999999
Q ss_pred CCCcEEEEEEEEcCCC--------CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEE
Q psy670 276 GPDSGTYRCNVKNEFG--------ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVW 345 (540)
Q Consensus 276 ~~d~g~y~C~~~~~~~--------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W 345 (540)
.+|+|.|.|.+.+..+ .......+.|.... ..+|.+........+..|+.++|.|.+.+. |. +.+.|
T Consensus 87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W 163 (263)
T 3iu4_H 87 TDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAAS---TKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW 163 (263)
T ss_dssp GGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSC---CBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE
T ss_pred HHHCEEEEEEEEeCCCCccccccceeCCceEEEEeccc---CCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE
Confidence 9999999999987531 11122355554321 125555532222334579999999999985 43 67999
Q ss_pred EECCEEccCCCceE-EEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670 346 FHEGKELQQTDRIS-WNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404 (540)
Q Consensus 346 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 404 (540)
++..+....... .....++. ...+.|.|.....+| |.|+|.|.|..+.......+.
T Consensus 164 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~ 221 (263)
T 3iu4_H 164 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE 221 (263)
T ss_dssp --GGGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEEECC
T ss_pred --CCcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeEEEc
Confidence 544332211100 00111222 223479999888888 999999999887655444443
No 397
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.50 E-value=3.1e-13 Score=103.01 Aligned_cols=93 Identities=22% Similarity=0.461 Sum_probs=79.3
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++.... ++. ..+|.|.++..+|+|.|+|.|
T Consensus 6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~~~--~~~L~i~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE--DKG--GFFLEIHKTDTSDSGLYTCTV 81 (99)
T ss_dssp EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEE--ETT--EEEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEE--eCC--EEEEEECCCCcccCEEEEEEE
Confidence 6677777888889999999999999999999999999999998777665432 222 237999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 82 KNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEeEEEEEEEEe
Confidence 99999999888888863
No 398
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.50 E-value=1.7e-13 Score=107.46 Aligned_cols=94 Identities=20% Similarity=0.317 Sum_probs=80.5
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+.. ... ...|.|.+++.+|+|.|+|.
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~--~~~--~~~L~I~~v~~~D~G~Y~C~ 81 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN--SEN--GSKLTILAARQEHCGCYTLL 81 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE--CSS--EEEEEETTCCTTTCEEEEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE--cCC--EEEEEECCCChhcCEEEEEE
Confidence 37777777888899999999999999999999999999999988776655442 221 33899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.|..|.....+.|.|..
T Consensus 82 a~N~~g~~~~~~~l~V~~ 99 (114)
T 2cqv_A 82 VENKLGSRQAQVNLTVVD 99 (114)
T ss_dssp EECSSCEEECCEEEEEEC
T ss_pred EEECCCcEEEEEEEEEEC
Confidence 999999998899998876
No 399
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.50 E-value=1.1e-13 Score=125.63 Aligned_cols=167 Identities=14% Similarity=0.265 Sum_probs=103.8
Q ss_pred EEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--E--E-cc------------CCCceEEEEEecCCeeEEEEEEc
Q psy670 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--K--E-LQ------------QTDRISWNVTLKGDKYHIRLEVK 376 (540)
Q Consensus 314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~--~-~~------------~~~~~~~~~~~~~~~~~~~L~i~ 376 (540)
+...+....+.+|++++|.|.+. .+.+.+.|++.. . . +. ...++.. ..+. .....|.|.
T Consensus 6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~--~~~~-~~~~~L~I~ 81 (252)
T 1oga_E 6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSV--SREK-KESFPLTVT 81 (252)
T ss_dssp EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEE--CCSS-TTBCCEEEC
T ss_pred ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEE--EecC-CCEEEEEEC
Confidence 44456677899999999999985 457899999853 1 1 10 0122222 1110 112379999
Q ss_pred CCCCCCCeeEEEEEEcCC---eeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeee
Q psy670 377 DPRKEDTGLYKCNIKNFH---GELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSV 453 (540)
Q Consensus 377 ~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (540)
+++.+|+|.|.|.+.+.. ........|.|... +....
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------~~~~~ 121 (252)
T 1oga_E 82 SAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTED----------------------------------------LKNVF 121 (252)
T ss_dssp SCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESC----------------------------------------GGGCB
T ss_pred cCChhhCEEEEEEEecCCccceeECCCEEEEEecc----------------------------------------cCCCC
Confidence 999999999999999862 11122234555430 00012
Q ss_pred eceeec-CCcEEEecCCCeEEEEEEEeee-cCC-ceEEEecCeecCCC----------------CeEE----EEEEec--
Q psy670 454 VPVIRE-VPKVVTISKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKED----------------NKHV----VHIEQV-- 508 (540)
Q Consensus 454 ~p~i~~-~~~~~~~~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~----------------~~~~----~~~~~~-- 508 (540)
+|.+.. .+....+.+|+.++|.|.+.|. |++ +++|+|+|..+..+ ..+. +.+...
T Consensus 122 ~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~ 201 (252)
T 1oga_E 122 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW 201 (252)
T ss_dssp CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred CCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHh
Confidence 555543 2333334568999999999986 654 99999999877532 1222 233333
Q ss_pred --CCeEEEEEEeeeeeee
Q psy670 509 --KDVSMNFELWLGIVEK 524 (540)
Q Consensus 509 --~~g~y~c~~~~~~~~~ 524 (540)
+.|.|+|.+....+.+
T Consensus 202 ~d~~~~ytC~v~~~~l~~ 219 (252)
T 1oga_E 202 QNPRNHFRCQVQFYGLSE 219 (252)
T ss_dssp TCTTCEEEEEEEECCBCT
T ss_pred ccCCCEEEEEEEcCCCCC
Confidence 4678999998765544
No 400
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.50 E-value=1.9e-13 Score=121.73 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=107.6
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e---c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I---E-----------DTGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+. +...+.|||.. .. + . ...|+.+.... ....++|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 85 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDK---SISTAYLQWTT 85 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEG---GGTEEEEEESS
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecC---CCCEEEEEECC
Confidence 3568899999999999653 34579999832 11 1 0 01344433322 12245899999
Q ss_pred CCCCCCeEEEEEEEcCCc-------ee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CCe
Q psy670 170 PTKDDGGNYRCNACNSIG-------ES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RPE 238 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~~~-------~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~ 238 (540)
++.+|+|.|.|.+.+..+ .. .....|.|.... ..+|.+...+....+..|+.+.|.|.+.+ +| .+.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~ 162 (226)
T 3mlr_H 86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 162 (226)
T ss_dssp CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC---CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCE
T ss_pred CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC---CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeE
Confidence 999999999999976431 11 123456665321 12455543333444568999999999988 55 457
Q ss_pred EEEEeCCEEeeccCce--EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670 239 VKWFKADKLVKESSKI--KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294 (540)
Q Consensus 239 v~W~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 294 (540)
+.| ++..+...... .....+......+.|.|.....+| |.|+|.+.|..+...
T Consensus 163 v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~ 217 (226)
T 3mlr_H 163 VSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 217 (226)
T ss_dssp EEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE
T ss_pred EEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcC
Confidence 999 44332211100 011111222334578999988888 999999999866543
No 401
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.49 E-value=3.2e-13 Score=122.92 Aligned_cols=181 Identities=16% Similarity=0.235 Sum_probs=108.5
Q ss_pred ccccCCCeEEEEEEEeec--CCCceEEEeC--CEe---e--------------cCCCceEEEEeecCcceEEEEEEEcCC
Q psy670 112 TIHQDGDLLVMECVLEAS--PMPDIIWYQG--TKV---I--------------EDTGRIKMSKKSIGKDTYLLRLEINNP 170 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~--p~~~v~W~~~--~~~---~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~~ 170 (540)
..+.+|++++|.|.+.+. ....+.|+|. +.. + ....|+.+..+. .....+|.|.++
T Consensus 33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~v 109 (256)
T 3sob_H 33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADT---SKNTAYLQMNSL 109 (256)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEG---GGTEEEEEECSC
T ss_pred EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeC---CCCEEEEEECCC
Confidence 467899999999999653 2457999983 211 1 011344443322 123357999999
Q ss_pred CCCCCeEEEEEEEcCCc-----------eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CC
Q psy670 171 TKDDGGNYRCNACNSIG-----------ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RP 237 (540)
Q Consensus 171 ~~~d~G~Y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~ 237 (540)
+.+|+|.|.|.+.+..+ .....+.|.|..... .+|.+........+.+|+.++|.|.+.+ +| ..
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~ 186 (256)
T 3sob_H 110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 186 (256)
T ss_dssp CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCC---BCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCC---CCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence 99999999999987531 122334566653221 2455543233334568999999999987 55 45
Q ss_pred eEEEEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 238 EVKWFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 238 ~v~W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
.+.| ++..+.............++ ...+.|.|.....+| |.|+|.+.+..+.......+.+
T Consensus 187 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~ 249 (256)
T 3sob_H 187 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 249 (256)
T ss_dssp EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence 7999 44443221110000111222 233578899998889 9999999998766554444443
No 402
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.49 E-value=4.1e-13 Score=102.31 Aligned_cols=94 Identities=24% Similarity=0.441 Sum_probs=77.6
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ....+. ..+|.|.+++.+|+|.|+|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~-~~~~~~--~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA-EEAEGG--LCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEE-EECGGG--EEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEE-EECCCC--EEEEEEccCCcCCCEEEEEEE
Confidence 56777777778899999999999999999999999999999876554322 222222 347999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|..
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 82 VNEYGARQCEARLEVRG 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCceeEEEEEEEEC
Confidence 99999999888888864
No 403
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=104.72 Aligned_cols=94 Identities=32% Similarity=0.545 Sum_probs=77.6
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+............++ ..+|.|.+++.+|+|.|+|.|
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---LHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTT---EEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEE
Confidence 55666667778899999999999999999999999999999877655443333222 238999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (100)
T 2kdg_A 82 KNRAGEATFTVQLDVLA 98 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EcCCCeEEEEEEEEEEe
Confidence 99999999898888864
No 404
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.48 E-value=1.8e-13 Score=102.92 Aligned_cols=89 Identities=19% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--EEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+....... . ... ...|.|.++..+|+|.|+|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~--~--~~~--~~~L~i~~~~~~D~G~Y~C 75 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD--A--KSS--TTSIFFPSAKRADSGNYKL 75 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEE--E--ETT--EEEEECTTBCGGGCEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEE--e--cCC--EEEEEECCCChhcCEEEEE
Confidence 566666667788999999999999999999999999999 7775543221 1 111 2389999999999999999
Q ss_pred EEEcCCeeeEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNI 405 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V 405 (540)
.|.|..|....++.|.|
T Consensus 76 ~a~N~~G~~~~~~~l~V 92 (93)
T 1wit_A 76 KVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEcCCCeEEEEEEEEE
Confidence 99999999888888876
No 405
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.47 E-value=1.5e-15 Score=134.25 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=87.0
Q ss_pred eEEeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEE
Q psy670 313 TFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C 388 (540)
.++..|....+.+|+.++|.|.+.+.++ +.|.| ++..+............++. .....|.|.+++.+|+|.|+|
T Consensus 6 v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C 83 (214)
T 1ow0_A 6 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTC 83 (214)
T ss_dssp CEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEE
T ss_pred EEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEE
Confidence 3344466666789999999999998754 68999 44433221000000001111 123478888888899999999
Q ss_pred EEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeec-CCcEEEec
Q psy670 389 NIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE-VPKVVTIS 467 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~~~~~~~ 467 (540)
.|.|..+.......+.+.. ...+|.+.. .+....+.
T Consensus 84 ~~~~~~~~~~~~~~i~~~~-------------------------------------------~~~~P~v~~~~~~~~~~~ 120 (214)
T 1ow0_A 84 TAAYPESKTPLTATLSKSG-------------------------------------------NTFRPEVHLLPPPSEELA 120 (214)
T ss_dssp EECCSSCSSCEEEEEECCS-------------------------------------------SCCCCEEEEECCCTTTTT
T ss_pred EEecCCCCCceeEeeccCC-------------------------------------------CCCCCEEEecCCCHHHhc
Confidence 9999876433222332100 012555432 22222356
Q ss_pred CCCeEEEEEEEeeecC--CceEEEecCeecCC
Q psy670 468 KKKTVVIECKVMSMYE--PSVTWMKEKNTVKE 497 (540)
Q Consensus 468 ~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~ 497 (540)
.|+.++|.|.+.|.++ ++|+|+|||..+..
T Consensus 121 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~ 152 (214)
T 1ow0_A 121 LNELVTLTCLARGFSPKDVLVRWLQGSQELPR 152 (214)
T ss_dssp SSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred cCCceEEEEEEeeeECCCcEEEEEECCEECCC
Confidence 7999999999999643 39999999988754
No 406
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.47 E-value=7.2e-13 Score=101.17 Aligned_cols=95 Identities=25% Similarity=0.505 Sum_probs=76.6
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......+......+. ..+|.|.++..+|+|.|+|.|
T Consensus 5 pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a 82 (100)
T 3irg_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD--LTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSS--EEEEEESSCCGGGCEEEEEEE
T ss_pred CCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecCC--EEEEEEeecCcccCEEEEEEE
Confidence 566666677788999999999999999999999999999998643322233333322 338999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|.....+.|.|..
T Consensus 83 ~n~~g~~~~~~~l~V~~ 99 (100)
T 3irg_A 83 GNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEEEEEEEEEEe
Confidence 99999998888888763
No 407
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.47 E-value=1.8e-13 Score=121.94 Aligned_cols=179 Identities=15% Similarity=0.221 Sum_probs=107.7
Q ss_pred eeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E---Ee---ec-----------cCceEEEEecCCCeEEEEEEEeCC
Q psy670 216 IIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K---LV---KE-----------SSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~---~l---~~-----------~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
.+.+.+|++++|.|.+.+. +...+.|++.. . .+ .. ..++...... ......|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v 86 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDK--SISTAYLQWTTL 86 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEG--GGTEEEEEESSC
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecC--CCCEEEEEECCC
Confidence 4667899999999999753 35679999832 1 11 00 1222222221 112357999999
Q ss_pred CCCCcEEEEEEEEcCCC---------CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeE
Q psy670 275 IGPDSGTYRCNVKNEFG---------ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEI 343 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~---------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i 343 (540)
+.+|+|.|.|.+.+..+ .......+.|...+ ..+|.+...+....+..|+.+.|.|.+.+. | .+.+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v 163 (226)
T 3mlr_H 87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV 163 (226)
T ss_dssp CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC---CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEE
T ss_pred CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC---CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEE
Confidence 99999999999976421 01122345554321 225555533333345689999999999984 4 4579
Q ss_pred EEEECCEEccCCCceE-EEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 344 VWFHEGKELQQTDRIS-WNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 344 ~W~~~~~~~~~~~~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
.| ++..+....... .....++. ...+.|.|.....+| |.|+|.|.|..+.......
T Consensus 164 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~ 221 (226)
T 3mlr_H 164 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 221 (226)
T ss_dssp EE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred EE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence 99 443332211100 00111222 223479999988888 9999999998876554443
No 408
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.47 E-value=6.2e-13 Score=110.41 Aligned_cols=94 Identities=22% Similarity=0.446 Sum_probs=80.9
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+....++ ...|.|.+++.+|+|.|+|.|
T Consensus 41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a 117 (154)
T 1fhg_A 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCKA 117 (154)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCC---eEEEEECCCChhcCEEEEEEE
Confidence 66777777778899999999999999999999999999999987776655432222 248999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|..
T Consensus 118 ~N~~G~~~~~~~l~V~~ 134 (154)
T 1fhg_A 118 VNSLGEATCTAELLVET 134 (154)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCeEEEEEEEEEeC
Confidence 99999999999999887
No 409
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.46 E-value=3.1e-13 Score=122.97 Aligned_cols=184 Identities=13% Similarity=0.195 Sum_probs=109.0
Q ss_pred eeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E---Eee---c-----------cCceEEEEecCCCeEEEEEEEeCC
Q psy670 216 IIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K---LVK---E-----------SSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~---~l~---~-----------~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
...+.+|++++|.|.+.+. ....+.|++.. . .+. . ..++.+.... ......|.|.++
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v 109 (256)
T 3sob_H 32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADT--SKNTAYLQMNSL 109 (256)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEG--GGTEEEEEECSC
T ss_pred cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeC--CCCEEEEEECCC
Confidence 3457789999999999753 34579999732 1 110 0 1122222221 122346999999
Q ss_pred CCCCcEEEEEEEEcCCC-----------CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cC-CC
Q psy670 275 IGPDSGTYRCNVKNEFG-----------ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KP-MP 341 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p-~~ 341 (540)
+.+|+|.|.|.+.+..+ .......+.|...+ ..+|.+........+.+|+.++|.|.+.+ .| ..
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~ 186 (256)
T 3sob_H 110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 186 (256)
T ss_dssp CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC---CBCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC---CCCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence 99999999999987431 12223455554321 22555553333334568999999999988 45 34
Q ss_pred eEEEEECCEEccCCCceE-EEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 342 EIVWFHEGKELQQTDRIS-WNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 342 ~i~W~~~~~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
.+.| ++..+....... .....++.. ..+.|.|.....+| |.|+|.|.|..+.......|.+..
T Consensus 187 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~~ 251 (256)
T 3sob_H 187 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS 251 (256)
T ss_dssp EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC-
T ss_pred EEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecccC
Confidence 7899 554443211100 001112221 23478999988889 999999999987766666665543
No 410
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.45 E-value=6.3e-13 Score=102.92 Aligned_cols=93 Identities=27% Similarity=0.527 Sum_probs=79.2
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++... .++. ...|.|.+++.+|+|.|+|.|
T Consensus 13 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~--~~~~--~~~L~i~~~~~~D~G~Y~C~a 88 (107)
T 3irg_B 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP--ADGA--EHGLLLTAALPTDAGVYVCRA 88 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECC--EETT--EEEEEESSCCGGGCEEEEEEE
T ss_pred CCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEE--eCCC--EEEEEEccCCHHhCEEEEEEE
Confidence 677777788888999999999999999999999999999998776655432 2222 337999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|..|....++.|.|..
T Consensus 89 ~n~~g~~~~~~~l~V~~ 105 (107)
T 3irg_B 89 RNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EcCCCcEEEEEEEEEEc
Confidence 99999999888888876
No 411
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.44 E-value=1.1e-12 Score=102.74 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=83.1
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 81 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE----NGSKLTILAARQEHCGCYTLL 81 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECS----SEEEEEETTCCTTTCEEEEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcC----CEEEEEECCCChhcCEEEEEE
Confidence 3788888888888999999999999999999999999999988776665554321 134899999999999999999
Q ss_pred EEcCCCCeeeeEEEEEeeccCCC
Q psy670 286 VKNEFGESNANLNLNIEAEAEPE 308 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~~~~~~~ 308 (540)
|.|..|.....+.|.|...+.+.
T Consensus 82 a~N~~g~~~~~~~l~V~~~p~~P 104 (114)
T 2cqv_A 82 VENKLGSRQAQVNLTVVDKPDPP 104 (114)
T ss_dssp EECSSCEEECCEEEEEECSCSCC
T ss_pred EEECCCcEEEEEEEEEECCCCCC
Confidence 99999988888889988765443
No 412
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.44 E-value=4.4e-12 Score=106.81 Aligned_cols=154 Identities=15% Similarity=0.194 Sum_probs=104.1
Q ss_pred ccccCCCeEEEEEEEeecCCCc-eEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 112 TIHQDGDLLVMECVLEASPMPD-IIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 112 ~~v~~G~~v~l~C~~~~~p~~~-v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
..|.+|+++.|+|.+. .+.+. +.|.-. ++..... .......|.|.+++. | |.|.|.+.......
T Consensus 9 ~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~-----------~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~ 74 (185)
T 1iam_A 9 VILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLL-----------PGNNRKVYELSNVQE-D-SQPMCYSNCPDGQS 74 (185)
T ss_dssp EEEETTEEEEEEEEEC-SSSCSEEEEECSSCEEEECS-----------SSSSEEEEEEEEECS-C-BCCEEEEECSSCEE
T ss_pred cEEeCCCCEEEEEEcc-CCCCccceEEeeCCCccEec-----------cCCceeEEEEEecCc-C-CEEEEEEECCCCce
Confidence 5689999999999995 45554 777531 1111100 011122688999874 4 89999997765667
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
...+.|.|+..+ ..+...+....+.+|+.++|.|.+.+ .|.. .|+|++++..+.... .......
T Consensus 75 ~~~~~l~V~~~P------~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-------~~~~~~~ 141 (185)
T 1iam_A 75 TAKTFLTVYWTP------ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-------AVGEPAE 141 (185)
T ss_dssp EEECEEEEEBCC------SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-------CCTTTEE
T ss_pred EEEEEEEEeCCC------CCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-------CCCcccc
Confidence 888889888632 22333344445778999999999988 6664 489999999886432 0112233
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
.+|.+...+.+|...|+|+|.+..+.
T Consensus 142 ~tl~~~~~reD~g~~~sC~A~~~l~~ 167 (185)
T 1iam_A 142 VTTTVLVRRDHHGAQFSCRTELDLRP 167 (185)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred EEEEEeceeccCCCeEEEEEEecCcc
Confidence 46777766666666999999987663
No 413
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=107.38 Aligned_cols=91 Identities=23% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. ..++.. ..++ +|.|.+++.+|+|.|+|
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~--~~~~-----~L~i~~v~~~D~G~Y~C 79 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ--LENG-----VLQIRYAKLGDTGRYTC 79 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEE--EETT-----EEEEESCCGGGCCCEEE
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEE--ccCC-----EEEEccCCcCCCEEEEE
Confidence 367777777888899999999999999999999999999988864 333322 2222 79999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~ 407 (540)
.|.|..|....++.|.|..
T Consensus 80 ~a~n~~g~~~~~~~l~V~~ 98 (118)
T 2eo9_A 80 IASTPSGEATWSAYIEVQE 98 (118)
T ss_dssp EEECSSCEEEEECCEEEEC
T ss_pred EEEcCCCcEEEEEEEEEEe
Confidence 9999999988888888876
No 414
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.43 E-value=8e-13 Score=103.75 Aligned_cols=94 Identities=32% Similarity=0.521 Sum_probs=78.9
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
+|.|+..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++... .++. ...+|.|.+++.+|+|.|+|.
T Consensus 15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~--~~~~-~~~~L~I~~v~~~D~G~Y~C~ 91 (116)
T 2kkq_A 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY--QDNT-GRVTLLIKDVNKKDAGWYTVS 91 (116)
T ss_dssp CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEE--ECTT-CEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEE--eCCC-CeEEEEECCCCcccCEEEEEE
Confidence 67788888888999999999999999999999999999998875 3444332 2221 234799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.|..|....++.|.|..
T Consensus 92 a~N~~G~~~~~~~l~V~~ 109 (116)
T 2kkq_A 92 AVNEAGVTTCNTRLDVTA 109 (116)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEcCCCeEEEEEEEEEeC
Confidence 999999999888898876
No 415
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-13 Score=104.55 Aligned_cols=96 Identities=29% Similarity=0.504 Sum_probs=81.2
Q ss_pred CCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 309 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............++ ..+|.|.+++.+|+|.|+|
T Consensus 7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG---VHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTS---CEEEEESSCCGGGCSBBCE
T ss_pred CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCC---eEEEEEeeCCcccCEEEEE
Confidence 3478888888889999999999999999999999999999998876655443332222 2389999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~ 407 (540)
.|.|..|....++.|.|..
T Consensus 84 ~a~n~~g~~~~~~~l~V~~ 102 (110)
T 2dm3_A 84 IATNRAGQNSFSLELVVAA 102 (110)
T ss_dssp EEECSSCEEEECCEEEEEC
T ss_pred EEECCCCEEEEEEEEEEeC
Confidence 9999999999899998876
No 416
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.43 E-value=2.8e-12 Score=97.13 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=74.6
Q ss_pred EeCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670 315 IEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393 (540)
Q Consensus 315 ~~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 393 (540)
...+....+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+.. .++ ...|.|.+++.+|+|.|+|.|.|.
T Consensus 5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~--~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (97)
T 2bk8_A 5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY--EDG--VAILYVKDITKLDDGTYRCKVVND 80 (97)
T ss_dssp ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE--ETT--EEEEEECSCCGGGCEEEEEEEECS
T ss_pred eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE--cCC--eEEEEEecCChhhCeEEEEEEECC
Confidence 334566788999999999999997 899999999999998777765533 222 338999999999999999999999
Q ss_pred CeeeEEEEEEEEEE
Q psy670 394 HGELNANLTLNIEM 407 (540)
Q Consensus 394 ~g~~~~~~~l~V~~ 407 (540)
.|....++.|.|..
T Consensus 81 ~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 81 YGEDSSYAELFVKG 94 (97)
T ss_dssp SCEEEEEEEEEETT
T ss_pred CCeEeEEEEEEEEe
Confidence 99999888888764
No 417
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.43 E-value=1.4e-12 Score=101.85 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=70.2
Q ss_pred eCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe---cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL---KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
..+..+.|.|.+.|+|.|.|+|++||..+....+....... ++.....+|.|.++...|+|.|+|.|.|..|....+
T Consensus 13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t 92 (126)
T 1he7_A 13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS 92 (126)
T ss_dssp CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence 36788999999999999999999999999887765444332 122234589999999999999999999999999999
Q ss_pred EEEEEEE
Q psy670 401 LTLNIEM 407 (540)
Q Consensus 401 ~~l~V~~ 407 (540)
+.|.|..
T Consensus 93 ~~l~v~~ 99 (126)
T 1he7_A 93 IMAAFMD 99 (126)
T ss_dssp EEECCCS
T ss_pred EEEEEEc
Confidence 8888876
No 418
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.42 E-value=1.9e-12 Score=99.06 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=70.3
Q ss_pred eCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe-cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402 (540)
Q Consensus 324 ~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 402 (540)
..+..+.|.|.+.|.|.|.+.|+++|..+............ +......+|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 93 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 46888999999999999999999999999877654333322 33344557999999999999999999999999999999
Q ss_pred EEEEE
Q psy670 403 LNIEM 407 (540)
Q Consensus 403 l~V~~ 407 (540)
|.|..
T Consensus 94 l~V~~ 98 (103)
T 1wwb_X 94 AHFMG 98 (103)
T ss_dssp ECCSC
T ss_pred EEECC
Confidence 98876
No 419
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.42 E-value=2.3e-13 Score=104.91 Aligned_cols=94 Identities=22% Similarity=0.479 Sum_probs=79.6
Q ss_pred CCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 309 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....++.... .+ ...+|.|.+++.+|+|.|+|
T Consensus 12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C 87 (106)
T 1nct_A 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT--TK--YKSTFEISSVQASDEGNYSV 87 (106)
T ss_dssp SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE--CS--SEEEEEECCCCSSCCSEEEE
T ss_pred CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE--CC--CEEEEEECcCCchhCEEEEE
Confidence 347788888888999999999999999999999999999999887766655432 21 12389999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIE 406 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~ 406 (540)
.|.|..|....++.|.|.
T Consensus 88 ~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 88 VVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CCBCSSCBCCEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEE
Confidence 999999998888888774
No 420
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=8.6e-13 Score=100.68 Aligned_cols=91 Identities=25% Similarity=0.516 Sum_probs=76.3
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.. . .+. +|.|.+++.+|+|.|+|
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--~-~~~----~L~i~~v~~~d~G~Y~C 79 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--Q-EQG----TLQIKNLRISDTGTYTC 79 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE--C-TTC----CEEEESCCTTTCCEEEE
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE--c-CCC----EEEEccCCcccCEEEEE
Confidence 4788888888888999999999999999999999999999888643 22221 1 222 79999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~ 407 (540)
.|.|..|....++.|.|..
T Consensus 80 ~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2edj_A 80 VATSSSGETSWSAVLDVTE 98 (100)
T ss_dssp EEECSSCCCBCCEEEEEES
T ss_pred EEEcCCCCEEEEEEEEEec
Confidence 9999999998888888875
No 421
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6e-13 Score=101.11 Aligned_cols=89 Identities=17% Similarity=0.276 Sum_probs=74.2
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.|...+....+.+|+.+.|.|.+ .|.+.+.|+++|..+..+.++.+. .++. ...|.|.++..+|+|.|+|.|
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~--~~~~--~~~L~I~~v~~~D~G~Y~C~a 80 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVV--QKGR--IHKLVIANALTEDEGDYVFAP 80 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEE--ECSS--EEEEEESSCCGGGCSEEEEEE
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEE--EeCC--EEEEEECCCChhhCEEEEEEE
Confidence 6677777788899999999999999 888999999999999887776543 2332 237999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|. ....++.|.|..
T Consensus 81 ~N~--~~~~~a~L~V~~ 95 (100)
T 2yuz_A 81 DAY--NVTLPAKVHVIS 95 (100)
T ss_dssp SSS--CCCEEEEEEEEC
T ss_pred cCC--CeeEEEEEEEeC
Confidence 998 456777888876
No 422
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.41 E-value=5.3e-12 Score=96.57 Aligned_cols=85 Identities=20% Similarity=0.424 Sum_probs=69.6
Q ss_pred cCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEE
Q psy670 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194 (540)
Q Consensus 115 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 194 (540)
..|..+.|.|.+.|.|.|.+.|+|+|..+..+.+........+.......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 93 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 46788999999999999999999999999876553232222223334557999999999999999999999999999999
Q ss_pred EEEec
Q psy670 195 LNFQG 199 (540)
Q Consensus 195 l~v~~ 199 (540)
|.|..
T Consensus 94 l~V~~ 98 (103)
T 1wwb_X 94 AHFMG 98 (103)
T ss_dssp ECCSC
T ss_pred EEECC
Confidence 98875
No 423
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.41 E-value=4.4e-12 Score=111.06 Aligned_cols=171 Identities=19% Similarity=0.315 Sum_probs=102.1
Q ss_pred ccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--E---Eee-------ccCceEEEEecCCCeEEEEEEEeCCCCCC
Q psy670 211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--K---LVK-------ESSKIKIIVNEQDDTYEIICEITDPIGPD 278 (540)
Q Consensus 211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~---~l~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 278 (540)
...+..+.+.+|++++|.|.+.+.+ +.+.|++.. . .+. ...++..... ........|.|.+++.+|
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFD-SKERRYSTLHIRDAQLED 82 (207)
T ss_dssp EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEEC-TTTCSEEEEEECSCCGGG
T ss_pred EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEec-cCCCCEEEEEECCCCHHH
Confidence 3445667788999999999998654 479999843 1 110 1223333222 011233579999999999
Q ss_pred cEEEEEEEEcCCC---------C--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEE
Q psy670 279 SGTYRCNVKNEFG---------E--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVW 345 (540)
Q Consensus 279 ~g~y~C~~~~~~~---------~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W 345 (540)
+|.|.|.+.+..+ . ......|.|.....+ ..+|.+.. .. + .+.|.|.+.+. |. +.|.|
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~-~~~P~v~~------~~-~-~~~l~C~~~g~~P~~~~v~W 153 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP-PAKPSVFI------MK-N-GTNVACLVKDFYPKEVTISL 153 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC-CCCCEEEE------EE-E-TTEEEEEEEEESSSCCEEEE
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC-CCCCeEEE------eC-C-CCeEEEEEeeEeCCCeEEEE
Confidence 9999999988642 1 123356666542111 11333322 11 1 26899999975 54 69999
Q ss_pred EECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 346 FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
+++ ..+..... ......++ .+ .+. ......|.|.|+|.|.|..+...
T Consensus 154 ~~~-~~l~~~~~-~~~~~~~g-~y--~~~-~~~~~~~~~~ytC~v~~~~~~~~ 200 (207)
T 1ypz_E 154 RSS-KKIVEFDP-AIVISPSG-KY--SAV-KLGQYGDSNSVTCSVQHNSETVH 200 (207)
T ss_dssp ECS-SEEEECCC-EEEECTTS-SE--EEE-ECEEESSTTTCEEEEEETTEEEE
T ss_pred ecC-CcccCCcc-ceEEcCCC-cE--EEE-EeecccCCCcEEEEEEECCccEe
Confidence 999 66653322 11112222 22 221 22233678999999999887543
No 424
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.40 E-value=1.1e-11 Score=104.36 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=102.5
Q ss_pred CceeecCCCCeEEEEEEecccCCCeEEEEeC-CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292 (540)
Q Consensus 214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 292 (540)
|....+.+|+++.|.|.+....+..+.|... ++... . ..+.....|.|.+++. | |.|.|.+......
T Consensus 6 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~---------~-~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~ 73 (185)
T 1iam_A 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL---------L-LPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQ 73 (185)
T ss_dssp SSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEE---------C-SSSSSEEEEEEEEECS-C-BCCEEEEECSSCE
T ss_pred CCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccE---------e-ccCCceeEEEEEecCc-C-CEEEEEEECCCCc
Confidence 4456688999999999997533334777531 11111 0 1112224688999874 3 8999998765445
Q ss_pred eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC--eEEEEECCEEccCCCceEEEEEecCCee
Q psy670 293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKY 369 (540)
Q Consensus 293 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~ 369 (540)
....+.|.|... |..+...+....+.+|+.++|.|.+.| .|.. .|+|++++..+..... .....
T Consensus 74 ~~~~~~l~V~~~------P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~-------~~~~~ 140 (185)
T 1iam_A 74 STAKTFLTVYWT------PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-------VGEPA 140 (185)
T ss_dssp EEEECEEEEEBC------CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-------CTTTE
T ss_pred eEEEEEEEEeCC------CCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC-------CCccc
Confidence 666777777763 333444444456889999999999998 4553 5899999998854210 11112
Q ss_pred EEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 370 HIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 370 ~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
..+|++.....+|...|+|+|.|..+
T Consensus 141 ~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 141 EVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp EEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred cEEEEEeceeccCCCeEEEEEEecCc
Confidence 23677776555555599999999866
No 425
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.40 E-value=2.7e-12 Score=95.84 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=71.2
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
++.|...+....+.+|+.+.|.|.+.+ +.+.+.|+++|..+..+.++.+. .++. ..+|.|.+++.+|+|.|+|.|
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~--~~g~--~~~L~I~~v~~~D~G~Y~C~a 79 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEII--EDGK--KHILILHNCQLGMTGEVSFQA 79 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEE--EETT--EEEEEECSCCGGGCEEEEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEE--EECC--EEEEEECCCChhhCEEEEEEE
Confidence 678888888899999999999999976 55789999999999887776554 2333 238999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.|. ..+..|.|..
T Consensus 80 ~n~----~~sa~L~V~~ 92 (93)
T 1waa_A 80 ANT----KSAANLKVKE 92 (93)
T ss_dssp TTE----EEEEEEEEEC
T ss_pred CCC----cEEEEEEEEc
Confidence 884 3456666653
No 426
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.40 E-value=2.5e-11 Score=114.13 Aligned_cols=173 Identities=13% Similarity=0.145 Sum_probs=106.4
Q ss_pred CccccCCCeEEEEEEEeecC--------------CCceEEEeC--CE--e-e--cCCC---------c-eEEEEe-e---
Q psy670 111 PTIHQDGDLLVMECVLEASP--------------MPDIIWYQG--TK--V-I--EDTG---------R-IKMSKK-S--- 155 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--------------~~~v~W~~~--~~--~-~--~~~~---------~-~~~~~~-~--- 155 (540)
+..+.+|++++|.|.....+ ...+.||+. |+ . + ..+. + ..+... .
T Consensus 167 sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~~ 246 (401)
T 3f8u_B 167 APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEP 246 (401)
T ss_dssp SCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCCS
T ss_pred cEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccccc
Confidence 45688999999999985433 246999973 32 1 1 1110 1 111110 0
Q ss_pred cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceee-cCCCC-eEEEEEEecc
Q psy670 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP-NESGT-LIQMKCKCSA 233 (540)
Q Consensus 156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~~ 233 (540)
.+......+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.. +|.+...+.... +..|+ .++|.|.+.+
T Consensus 247 ~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~-------pP~V~v~p~~~~~~~~G~~~vtL~C~a~G 319 (401)
T 3f8u_B 247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK-------PPKVSLMPATLARAAPGEAPPELLCLVSH 319 (401)
T ss_dssp SCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEESSSCCCCCTTCCCCCEEEEEEE
T ss_pred ccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc-------CCeEeeccCcceeecCCCccEEEEEEecC
Confidence 01234567999999999999999999998887777778888875 565544443333 34676 7999999988
Q ss_pred -cCC--CeEEEE-eCCE---EeeccCce--EEEEecCCCeE--EEEEEEeCCCCC-CcEEEEEEEEcCC
Q psy670 234 -KPR--PEVKWF-KADK---LVKESSKI--KIIVNEQDDTY--EIICEITDPIGP-DSGTYRCNVKNEF 290 (540)
Q Consensus 234 -~p~--~~v~W~-~~~~---~l~~~~~~--~~~~~~~~~~~--~~~l~i~~~~~~-d~g~y~C~~~~~~ 290 (540)
+|. +.|+|. +++. .+...... .......++.+ .+.|.+...+.+ +.+.|+|.+.|..
T Consensus 320 fyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s 388 (401)
T 3f8u_B 320 FYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388 (401)
T ss_dssp EBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred CcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence 566 789995 7651 12111100 00011122333 345666554333 4459999999865
No 427
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.39 E-value=1.9e-12 Score=98.56 Aligned_cols=94 Identities=24% Similarity=0.363 Sum_probs=77.7
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............. ...|.|.+++.+|+|.|+|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a 81 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVKA 81 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCCcCCCEEEEEEE
Confidence 66777777788889999999999999999999999999999887666544332222 347999999999999999999
Q ss_pred EcCCCCeeeeEEEEEee
Q psy670 287 KNEFGESNANLNLNIEA 303 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~ 303 (540)
.|..|.....+.|.|..
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 82 INIAGETSSHAFLLVQA 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCcEEEEEEEEEec
Confidence 99999888887777753
No 428
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.5e-12 Score=101.40 Aligned_cols=85 Identities=18% Similarity=0.308 Sum_probs=70.7
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+. ..+..+. ..+. ...|.|.++..+|+|.|+|.|.|..|..
T Consensus 31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~--~~~~--~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 105 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVR--TSDF--DTVFFVRQAARSDSGEYELSVQIENMKD 105 (118)
T ss_dssp SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEE--ECSS--EEEEEESSCCTTTCEEEEEEEECSSCEE
T ss_pred CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEE--ECCC--eEEEEECCCChhcCEEEEEEEEeCCCeE
Confidence 356778899999999999999999999999999986 3333332 2222 2379999999999999999999999998
Q ss_pred EEEEEEEEEE
Q psy670 398 NANLTLNIEM 407 (540)
Q Consensus 398 ~~~~~l~V~~ 407 (540)
..++.|.|..
T Consensus 106 ~~~~~l~V~~ 115 (118)
T 2e7c_A 106 TATIRIRVVE 115 (118)
T ss_dssp CCEEEEEEEC
T ss_pred EEEEEEEEEc
Confidence 8888888876
No 429
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.39 E-value=1.8e-12 Score=97.77 Aligned_cols=86 Identities=23% Similarity=0.494 Sum_probs=72.9
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.| +.+.|+++|..+....++... +. .|.|.+++.+|+|.|+|.|
T Consensus 9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~----~L~i~~~~~~D~G~Y~C~a 79 (95)
T 2ckn_A 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GE----EVEVRDSIPADSGLYACVT 79 (95)
T ss_dssp SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SS----EEEESSCCGGGSEEEEEEE
T ss_pred CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CC----EEEECCCChHHCEEEEEEe
Confidence 56666667778899999999999999987 799999999988776654432 22 8999999999999999999
Q ss_pred EcCCeeeEEEEEEEE
Q psy670 391 KNFHGELNANLTLNI 405 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V 405 (540)
.|..|....++.|.|
T Consensus 80 ~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 80 SSPSGSDTTYFSVNV 94 (95)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEE
Confidence 999999888888876
No 430
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=9.1e-13 Score=102.54 Aligned_cols=95 Identities=26% Similarity=0.458 Sum_probs=78.0
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+....++ ...|.|.+++.+|+|.|+|
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG---TCSLHTTASTLDDDGNYTI 83 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTC---EEEEEESSCCTTTCSCCEE
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCc---EEEEEECCCChhhCEEEEE
Confidence 367777777788899999999999999999999999999998875 344433322122 2479999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~ 407 (540)
.|.|..|.....+.|.|..
T Consensus 84 ~a~N~~g~~~~~~~l~V~~ 102 (110)
T 2dm2_A 84 MAANPQGRISCTGRLMVQA 102 (110)
T ss_dssp EEECTTCCEEECCCEEEEC
T ss_pred EEEECCCeEEEEEEEEEEC
Confidence 9999999998888888876
No 431
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.39 E-value=5.9e-12 Score=97.41 Aligned_cols=96 Identities=17% Similarity=0.322 Sum_probs=73.3
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccC---CCceEEEEEec--CCeeEEEEEEcCCCCCC
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQ---TDRISWNVTLK--GDKYHIRLEVKDPRKED 382 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~---~~~~~~~~~~~--~~~~~~~L~i~~~~~~d 382 (540)
.|.++..|....+.+|+.++|.|.+.|.|. +.|.|++++..... ..++.+..... .......|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 566777788888999999999999999998 99999998732211 12333321111 12234589999999999
Q ss_pred CeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 383 TGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 383 ~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
+|.|+|.|.|..|....++.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999885
No 432
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.39 E-value=3.5e-12 Score=99.68 Aligned_cols=97 Identities=22% Similarity=0.366 Sum_probs=74.2
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEcc---CCCeEEEEECCEE-cc--CCCceEEEEEe--cCCeeEEEEEEcCCCCCC
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAK---PMPEIVWFHEGKE-LQ--QTDRISWNVTL--KGDKYHIRLEVKDPRKED 382 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d 382 (540)
.+.|+..|....+.+|+.++|.|.+.+. |.|.|.|+|+... +. ...++.+.... ....+..+|.|.+++..|
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 86 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 86 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence 3456777888899999999999999875 8899999997421 11 12333332111 122234589999999999
Q ss_pred CeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 383 TGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 383 ~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+|.|+|.|.|..|..+.++.|.|.+
T Consensus 87 aG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 87 AGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 9999999999999999999999987
No 433
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.39 E-value=5.1e-13 Score=103.66 Aligned_cols=92 Identities=25% Similarity=0.468 Sum_probs=69.0
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........ ...+. .|.|.+++.+|+|.|+|.|
T Consensus 10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--~~~~~----~L~i~~v~~~D~G~Y~C~a 83 (108)
T 3kvq_A 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNR----NLTIRRVRKEDEGLYTCQA 83 (108)
T ss_dssp -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE--ETTTT----EEEECSCCGGGCEEEEEEE
T ss_pred CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE--eCCCc----EEEEeecCcccCEEEEEEE
Confidence 66676677788899999999999999999999999999998876655433 22222 7999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEMV 408 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~~ 408 (540)
.|..|....++.|.|...
T Consensus 84 ~n~~g~~~~~~~l~V~~~ 101 (108)
T 3kvq_A 84 CSVLGCAKVEAFFIIEGA 101 (108)
T ss_dssp C----CEEEEEEEEEEC-
T ss_pred EeCCCceEEEEEEEEeCC
Confidence 999999999999988763
No 434
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.38 E-value=6.5e-12 Score=98.07 Aligned_cols=86 Identities=22% Similarity=0.346 Sum_probs=69.6
Q ss_pred CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEee--cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEE
Q psy670 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS--IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI 193 (540)
Q Consensus 116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 193 (540)
.+..+.|.|.+.|+|.|.|+|+|||..+..+.+....... .........|.|.++...|+|.|+|.|.|..|.....+
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~ 93 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence 6778999999999999999999999999877665433221 11112345899999999999999999999999999999
Q ss_pred EEEEecCc
Q psy670 194 ALNFQGGE 201 (540)
Q Consensus 194 ~l~v~~~~ 201 (540)
.|.|...+
T Consensus 94 ~l~v~~~P 101 (126)
T 1he7_A 94 MAAFMDNP 101 (126)
T ss_dssp EECCCSCT
T ss_pred EEEEEcCC
Confidence 99887643
No 435
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-12 Score=98.20 Aligned_cols=94 Identities=29% Similarity=0.510 Sum_probs=77.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............. + ...|.|.+++.+|+|.|+|.+
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~-~--~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK-G--LHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETT-T--EEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCC-C--eEEEEECCCCcccCEEEEEEE
Confidence 6777777778888999999999999999999999999999887765444333322 1 247999999999999999999
Q ss_pred EcCCCCeeeeEEEEEee
Q psy670 287 KNEFGESNANLNLNIEA 303 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~ 303 (540)
.|..|.....+.|.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (100)
T 2kdg_A 82 KNRAGEATFTVQLDVLA 98 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EcCCCeEEEEEEEEEEe
Confidence 99999888888887754
No 436
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2e-12 Score=98.44 Aligned_cols=88 Identities=26% Similarity=0.521 Sum_probs=73.7
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|+++|..+....... ..+ ...|.|.++..+|+|.|+|.|
T Consensus 11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~----~~~---~~~L~i~~v~~~D~G~Y~C~a 83 (99)
T 2yr3_A 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC----EAG---VAELHIQDALPEDHGTYTCLA 83 (99)
T ss_dssp EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE----ETT---EEEEEECSCCTTCCBCEEEEE
T ss_pred CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe----eCC---eEEEEECCCChhhCEEEEEEE
Confidence 6677777778889999999999999999999999999998886544321 112 238999999999999999999
Q ss_pred EcCCeeeEEEEEEEE
Q psy670 391 KNFHGELNANLTLNI 405 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V 405 (540)
.|..|....++.|.|
T Consensus 84 ~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 84 ENALGQVSCSAWVTV 98 (99)
T ss_dssp ECSSCEEEEECCEEE
T ss_pred EECCCeEEEEEEEEE
Confidence 999999888887776
No 437
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.36 E-value=1.3e-11 Score=108.09 Aligned_cols=157 Identities=17% Similarity=0.291 Sum_probs=93.9
Q ss_pred EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--EEcc----------CCCceEEEEEec-CCeeEEEEEEcCCCCC
Q psy670 315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--KELQ----------QTDRISWNVTLK-GDKYHIRLEVKDPRKE 381 (540)
Q Consensus 315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~~~~----------~~~~~~~~~~~~-~~~~~~~L~i~~~~~~ 381 (540)
...+..+.+.+|++++|.|.+.+.+ +.+.|++.. ..+. ...++... .+ ......+|.|.+++.+
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~~L~I~~v~~~ 81 (207)
T 1ypz_E 5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSA--FDSKERRYSTLHIRDAQLE 81 (207)
T ss_dssp EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEE--ECTTTCSEEEEEECSCCGG
T ss_pred EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEE--eccCCCCEEEEEECCCCHH
Confidence 3445667889999999999998654 489999853 1110 12233222 22 1122348999999999
Q ss_pred CCeeEEEEEEcCCe---------e--eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeee
Q psy670 382 DTGLYKCNIKNFHG---------E--LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLT 450 (540)
Q Consensus 382 d~G~Y~C~a~n~~g---------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (540)
|+|.|.|.+.+..+ . ......|.|.... .
T Consensus 82 D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~----------------------------------------~ 121 (207)
T 1ypz_E 82 DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKS----------------------------------------Q 121 (207)
T ss_dssp GCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCC----------------------------------------C
T ss_pred HCEEEEEEEecCCcccccccccceeeecCccEEEEccCC----------------------------------------C
Confidence 99999999998642 1 1123456665300 0
Q ss_pred eeeeceeecCCcEEEecCCCeEEEEEEEeeecC--CceEEEecCeecCCC---------CeEEE-EEEe-cCCeEEEEEE
Q psy670 451 LSVVPVIREVPKVVTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKED---------NKHVV-HIEQ-VKDVSMNFEL 517 (540)
Q Consensus 451 ~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~---------~~~~~-~~~~-~~~g~y~c~~ 517 (540)
...+|.+.. ..+ .++|.|.+.|.++ +.++|+++ ..+... ..+.+ .... .+.|.|+|.+
T Consensus 122 ~~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v 192 (207)
T 1ypz_E 122 PPAKPSVFI-------MKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSV 192 (207)
T ss_dssp CCCCCEEEE-------EEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEE
T ss_pred CCCCCeEEE-------eCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEE
Confidence 001333322 111 2689999998644 69999999 655322 22333 2222 4568888888
Q ss_pred eeeeee
Q psy670 518 WLGIVE 523 (540)
Q Consensus 518 ~~~~~~ 523 (540)
......
T Consensus 193 ~~~~~~ 198 (207)
T 1ypz_E 193 QHNSET 198 (207)
T ss_dssp EETTEE
T ss_pred EECCcc
Confidence 765443
No 438
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.36 E-value=8.2e-12 Score=93.22 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=69.5
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
++.+...|....+.+|+.+.|.|.+.|.|.+.+.|++++..+..... . .|.|.+++.+|+|.|+|.|
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~----~L~i~~v~~~d~G~Y~C~a 69 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------K----LYMVPYVDLEHQGTYWCHV 69 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------S----EEEESSCCGGGCEEEEEEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------C----eEEECCCCHHhCEEEEEEE
Confidence 45666677778899999999999999999999999999998865432 1 7999999999999999999
Q ss_pred EcCCeeeE-EEEEEEEEE
Q psy670 391 KNFHGELN-ANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~-~~~~l~V~~ 407 (540)
.|..|... ..+.|.|..
T Consensus 70 ~n~~g~~~s~~~~l~V~~ 87 (91)
T 3bfo_A 70 YNDRDSQDSKKVEIIIDE 87 (91)
T ss_dssp ECSSCEEECCCEEEEEC-
T ss_pred EcCCCCEEeeeEEEEEeh
Confidence 99998654 556676654
No 439
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.36 E-value=1.9e-11 Score=95.48 Aligned_cols=89 Identities=16% Similarity=0.343 Sum_probs=67.6
Q ss_pred CccccCCCeEEEEEEEeec---CCCceEEEeCCEe-ec--CCCceEEEEe-ecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKV-IE--DTGRIKMSKK-SIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~---p~~~v~W~~~~~~-~~--~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
.+.+.+|++++|.|.+.+. |.|.|.|||+... +. ...++.+... ..........|.|.+++..|+|.|+|++.
T Consensus 16 ~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevs 95 (126)
T 2dav_A 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT 95 (126)
T ss_dssp CCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEE
Confidence 3468999999999999764 8899999997422 11 1344444321 11222235699999999999999999999
Q ss_pred cCCceeEEEEEEEEec
Q psy670 184 NSIGESNANIALNFQG 199 (540)
Q Consensus 184 ~~~~~~~~~~~l~v~~ 199 (540)
|..+..+..+.|+|..
T Consensus 96 n~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 96 YKDKFDSCSFDLEVHE 111 (126)
T ss_dssp CSSCEEEECCEEEEEC
T ss_pred eCCCcEEEEEEEEEEe
Confidence 9999999999999986
No 440
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.35 E-value=4.5e-12 Score=97.26 Aligned_cols=93 Identities=30% Similarity=0.388 Sum_probs=78.3
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+..... ...|.|.+++.+|+|.|+|.+
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a 83 (103)
T 3qp3_A 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG----VLTLEILDCHTDDSGTYRAVC 83 (103)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETT----EEEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCC----EEEEEEcCCCcccCEEEEEEE
Confidence 6677777778888899999999999999999999999999988776655543221 247999999999999999999
Q ss_pred EcCCCCeeeeEEEEEee
Q psy670 287 KNEFGESNANLNLNIEA 303 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~ 303 (540)
.|..|.....+.|.|..
T Consensus 84 ~N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 84 TNYKGEASDYATLDVTG 100 (103)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEEEEEEEEEEC
Confidence 99999888888888764
No 441
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.35 E-value=2e-12 Score=98.69 Aligned_cols=83 Identities=27% Similarity=0.551 Sum_probs=67.5
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceE-EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS-WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 397 (540)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....... .....++. +|.|.+++.+|+|.|+|.|.|..|..
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~N~~g~~ 91 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW----SLIMESVVPSDKGNYTCVVENEYGSI 91 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGT----EEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeE----EEEEccCCcCCCEEEEEEEEeCCCEE
Confidence 45678899999999999999999999999999887644321 11222222 79999999999999999999999998
Q ss_pred EEEEEEEE
Q psy670 398 NANLTLNI 405 (540)
Q Consensus 398 ~~~~~l~V 405 (540)
..++.|.|
T Consensus 92 ~~~~~l~V 99 (100)
T 3caf_A 92 NHTYHLDV 99 (100)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888876
No 442
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.35 E-value=2.8e-12 Score=117.30 Aligned_cols=179 Identities=15% Similarity=0.273 Sum_probs=106.0
Q ss_pred CccccCCCeEEEEEEEee--cCCCceEEEeC--CEe---e---cC-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670 111 PTIHQDGDLLVMECVLEA--SPMPDIIWYQG--TKV---I---ED-----------TGRIKMSKKSIGKDTYLLRLEINN 169 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~--~p~~~v~W~~~--~~~---~---~~-----------~~~~~~~~~~~~~~~~~~~L~i~~ 169 (540)
...+.+|++++|.|.+.+ .....+.|||. +.. + .. ..|+.+..+. .....+|.|.+
T Consensus 32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 108 (267)
T 3u1s_H 32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDS---GASTVYMELRG 108 (267)
T ss_dssp CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECG---GGCCEEEEECS
T ss_pred CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcC---CCCEEEEEECC
Confidence 356889999999999954 24468999983 211 1 00 1233333221 22334799999
Q ss_pred CCCCCCeEEEEEEEcC------Cc------------e-------eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCe
Q psy670 170 PTKDDGGNYRCNACNS------IG------------E-------SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL 224 (540)
Q Consensus 170 ~~~~d~G~Y~C~~~~~------~~------------~-------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~ 224 (540)
++.+|+|.|.|.+.+. .+ . ......|.|.... ..+|.+...+.......|+.
T Consensus 109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~ 185 (267)
T 3u1s_H 109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS---TKGPSVFPLAPSSKSTSGGT 185 (267)
T ss_dssp CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCGGGEETTE
T ss_pred CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC---CCCCEEEEecCCcccCCCCc
Confidence 9999999999999621 00 0 1113455665311 12455542222223357899
Q ss_pred EEEEEEecc-cC-CCeEEEEeCCEEeeccCceE--EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670 225 IQMKCKCSA-KP-RPEVKWFKADKLVKESSKIK--IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298 (540)
Q Consensus 225 ~~l~C~~~~-~p-~~~v~W~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 298 (540)
++|.|.+.+ +| .+.+.| ++..+....... ....+......+.|.|.....+| +.|+|.+.+..+.......
T Consensus 186 ~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~ 260 (267)
T 3u1s_H 186 AALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 260 (267)
T ss_dssp EEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEE
T ss_pred EEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEE
Confidence 999999987 55 567999 554443211110 11111222334578898888888 9999999997655443333
No 443
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.35 E-value=8.8e-12 Score=94.35 Aligned_cols=85 Identities=24% Similarity=0.497 Sum_probs=71.9
Q ss_pred CCccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670 110 KPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 188 (540)
....+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 9 ~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 83 (97)
T 2bk8_A 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE-----DGVAILYVKDITKLDDGTYRCKVVNDYGE 83 (97)
T ss_dssp CCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred cCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence 34678899999999999997 8899999999999887777665432 12348999999999999999999999999
Q ss_pred eEEEEEEEEec
Q psy670 189 SNANIALNFQG 199 (540)
Q Consensus 189 ~~~~~~l~v~~ 199 (540)
....+.|.|.+
T Consensus 84 ~~~~~~l~V~~ 94 (97)
T 2bk8_A 84 DSSYAELFVKG 94 (97)
T ss_dssp EEEEEEEEETT
T ss_pred EeEEEEEEEEe
Confidence 88888888864
No 444
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.35 E-value=6.1e-12 Score=99.16 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=69.3
Q ss_pred CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
.....|.|.+.|.|.|.+.|+++|..+.............+......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 20 ~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v 99 (118)
T 1wwc_A 20 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99 (118)
T ss_dssp CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence 36678999999999999999999999988776665554443334558999999999999999999999999999888877
Q ss_pred EE
Q psy670 406 EM 407 (540)
Q Consensus 406 ~~ 407 (540)
..
T Consensus 100 ~~ 101 (118)
T 1wwc_A 100 LK 101 (118)
T ss_dssp SC
T ss_pred cc
Confidence 66
No 445
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-11 Score=96.99 Aligned_cols=97 Identities=27% Similarity=0.451 Sum_probs=80.0
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
.+|.|+..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.... . ...+|.|.+++.+|+|.|+|
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~-~--~~~~L~I~~v~~~D~G~Y~C 90 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN-T--GRVTLLIKDVNKKDAGWYTV 90 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECT-T--CEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCC-C--CeEEEEECCCCcccCEEEEE
Confidence 4788888888899999999999999999999999999999988753 444443322 1 23479999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEeecc
Q psy670 285 NVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~~~ 305 (540)
.+.|..|.....+.|.|...+
T Consensus 91 ~a~N~~G~~~~~~~l~V~~~p 111 (116)
T 2kkq_A 91 SAVNEAGVTTCNTRLDVTARP 111 (116)
T ss_dssp EEEETTEEEEEEEEEEEECCS
T ss_pred EEEcCCCeEEEEEEEEEeCCC
Confidence 999999988888888887643
No 446
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3e-12 Score=101.00 Aligned_cols=93 Identities=22% Similarity=0.337 Sum_probs=76.6
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++..... . .|.|.+++.+|+|.|+|
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~-~------~L~i~~v~~~D~G~Y~C 79 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-G------VLQIRYAKLGDTGRYTC 79 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEET-T------EEEEESCCGGGCCCEEE
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccC-C------EEEEccCCcCCCEEEEE
Confidence 4777887888888999999999999999999999999999888643 33333221 1 79999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEeecc
Q psy670 285 NVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~~~ 305 (540)
.+.|..|.....+.|.|...+
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 80 IASTPSGEATWSAYIEVQEFG 100 (118)
T ss_dssp EEECSSCEEEEECCEEEECCS
T ss_pred EEEcCCCcEEEEEEEEEEeCC
Confidence 999999988888888887643
No 447
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.35 E-value=1.8e-13 Score=108.72 Aligned_cols=96 Identities=18% Similarity=0.345 Sum_probs=78.5
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccC--CCceEEEEEecCCeeEEEEEEcCCCCCCC-eeE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQ--TDRISWNVTLKGDKYHIRLEVKDPRKEDT-GLY 386 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y 386 (540)
+|.+.. +....+.+|+.+.|.|.+.|.|.|. |.|++++..+.. ..++.......+....++|.|.++..+|. |.|
T Consensus 14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y 92 (122)
T 2cry_A 14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY 92 (122)
T ss_dssp SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceE
Confidence 667766 6677788999999999999999987 999999988875 34444433333444456899999999998 999
Q ss_pred EEEEEcCCeeeEEEEEEEEEE
Q psy670 387 KCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 387 ~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+|.|.|..|.....+.|.|..
T Consensus 93 ~C~a~N~~G~~~~~~~l~V~~ 113 (122)
T 2cry_A 93 NCTAWNSFGSDTEIIRLKEQG 113 (122)
T ss_dssp EEEEECSSCEEEEEECCCCSC
T ss_pred EEEEECCCCeEEEEEEEEECC
Confidence 999999999999888888875
No 448
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.9e-12 Score=97.73 Aligned_cols=97 Identities=26% Similarity=0.421 Sum_probs=74.2
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEcc---CCCeEEEEECCE-EccC--CCceEEEEEec--CCeeEEEEEEcCCCCCC
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAK---PMPEIVWFHEGK-ELQQ--TDRISWNVTLK--GDKYHIRLEVKDPRKED 382 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~~~-~~~~--~~~~~~~~~~~--~~~~~~~L~i~~~~~~d 382 (540)
.+.|+..|..+.+.+|+.++|.|.+.+. |.|.|.|+|+.. .+.. ...+.+..... ......+|.|.++...|
T Consensus 12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 91 (118)
T 2edn_A 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD 91 (118)
T ss_dssp SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence 4567777888899999999999999985 789999999742 2221 22333322111 22234589999999999
Q ss_pred CeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 383 TGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 383 ~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
+|.|+|.|.|..|..++++.|.|..
T Consensus 92 ~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 92 RGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 9999999999999999999999875
No 449
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.34 E-value=4.6e-12 Score=96.40 Aligned_cols=93 Identities=20% Similarity=0.336 Sum_probs=75.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............ .....|.|.+++.+|+|.|+|.+
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAE---GGLCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECG---GGEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECC---CCEEEEEEccCCcCCCEEEEEEE
Confidence 666767777778889999999999999999999999999988765443332221 12247999999999999999999
Q ss_pred EcCCCCeeeeEEEEEe
Q psy670 287 KNEFGESNANLNLNIE 302 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~ 302 (540)
.|..|.....+.|.|.
T Consensus 82 ~N~~g~~~~~~~l~V~ 97 (99)
T 1u2h_A 82 VNEYGARQCEARLEVR 97 (99)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EECCCceeEEEEEEEE
Confidence 9999988877777775
No 450
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.34 E-value=3.4e-12 Score=95.76 Aligned_cols=89 Identities=21% Similarity=0.367 Sum_probs=71.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++ ..+....... .. .....|.|.+++.+|+|.|+|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~--~~----~~~~~L~i~~~~~~D~G~Y~C 75 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD--AK----SSTTSIFFPSAKRADSGNYKL 75 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEE--EE----TTEEEEECTTBCGGGCEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEE--ec----CCEEEEEECCCChhcCEEEEE
Confidence 566766677888999999999999999999999999999 7765442221 11 112479999999999999999
Q ss_pred EEEcCCCCeeeeEEEEE
Q psy670 285 NVKNEFGESNANLNLNI 301 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v 301 (540)
.|.|..|.....+.|.|
T Consensus 76 ~a~N~~G~~~~~~~l~V 92 (93)
T 1wit_A 76 KVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEcCCCeEEEEEEEEE
Confidence 99999998777777765
No 451
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.34 E-value=2.1e-12 Score=104.17 Aligned_cols=85 Identities=26% Similarity=0.434 Sum_probs=68.2
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECC----------------------------EEcc-CCCceEEEEEecCCe
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG----------------------------KELQ-QTDRISWNVTLKGDK 368 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~----------------------------~~~~-~~~~~~~~~~~~~~~ 368 (540)
+....+.+|+.+.|.|.+.|.|.|.|.|++++ ..+. ...++... ..+.
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~--~~~~- 101 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE--TTKD- 101 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEE--EETT-
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEE--eCCC-
Confidence 56778899999999999999999999999998 3332 22333332 2222
Q ss_pred eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
.+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 102 -~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 102 -RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp -EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred -EEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 3479999999999999999999999999988888874
No 452
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.34 E-value=4.2e-12 Score=116.11 Aligned_cols=182 Identities=14% Similarity=0.271 Sum_probs=106.7
Q ss_pred eeecCCCCeEEEEEEecc--cCCCeEEEEeCC--E---Eee---c-----------cCceEEEEecCCCeEEEEEEEeCC
Q psy670 216 IIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--K---LVK---E-----------SSKIKIIVNEQDDTYEIICEITDP 274 (540)
Q Consensus 216 ~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~---~l~---~-----------~~~~~~~~~~~~~~~~~~l~i~~~ 274 (540)
...+.+|++++|.|.+.+ .....+.|++.. . .+. . ..++..... .......|.|.++
T Consensus 32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~sL~I~~v 109 (267)
T 3u1s_H 32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRD--SGASTVYMELRGL 109 (267)
T ss_dssp CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEEC--GGGCCEEEEECSC
T ss_pred CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEc--CCCCEEEEEECCC
Confidence 356789999999999965 345679999832 1 110 0 112222221 1223347999999
Q ss_pred CCCCcEEEEEEEEcC------CC------------C-------eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeE
Q psy670 275 IGPDSGTYRCNVKNE------FG------------E-------SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV 329 (540)
Q Consensus 275 ~~~d~g~y~C~~~~~------~~------------~-------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v 329 (540)
+.+|+|.|.|.+.+. .+ . ......+.|.... ..+|.+...+.......|+.+
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~~ 186 (267)
T 3u1s_H 110 TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS---TKGPSVFPLAPSSKSTSGGTA 186 (267)
T ss_dssp CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCGGGEETTEE
T ss_pred ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC---CCCCEEEEecCCcccCCCCcE
Confidence 999999999998620 00 0 1112345554211 125555432222223578999
Q ss_pred EEEEEEEc-cC-CCeEEEEECCEEccCCCceEEEEEe-cCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670 330 VMECKVKA-KP-MPEIVWFHEGKELQQTDRISWNVTL-KGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405 (540)
Q Consensus 330 ~l~C~~~~-~p-~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 405 (540)
+|.|.+.+ .| .+.+.| ++..+............ ++.. ..+.|.|.....+| +.|+|.|.|..+.......+.+
T Consensus 187 ~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 263 (267)
T 3u1s_H 187 ALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 263 (267)
T ss_dssp EEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence 99999987 45 457999 55544321110000111 2222 23478898888888 9999999998766555555444
No 453
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-11 Score=97.13 Aligned_cols=84 Identities=17% Similarity=0.377 Sum_probs=69.9
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
....+.+|+.+.|.|.+.|.|.+.+.|+|++..+. ..+..+.. ......|.|.++..+|+|.|+|.+.|..|..
T Consensus 32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 105 (118)
T 2e7c_A 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRT-----SDFDTVFFVRQAARSDSGEYELSVQIENMKD 105 (118)
T ss_dssp SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEE-----CSSEEEEEESSCCTTTCEEEEEEEECSSCEE
T ss_pred CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEE-----CCCeEEEEECCCChhcCEEEEEEEEeCCCeE
Confidence 45678899999999999999999999999999986 34444332 1123479999999999999999999999988
Q ss_pred EEEEEEEEec
Q psy670 190 NANIALNFQG 199 (540)
Q Consensus 190 ~~~~~l~v~~ 199 (540)
...+.|.|.+
T Consensus 106 ~~~~~l~V~~ 115 (118)
T 2e7c_A 106 TATIRIRVVE 115 (118)
T ss_dssp CCEEEEEEEC
T ss_pred EEEEEEEEEc
Confidence 8888888875
No 454
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.9e-12 Score=96.85 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=79.1
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+... ..+ ...|.|.+++.+|+|.|+|
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~-~~~--~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD-LDG--TCSLHTTASTLDDDGNYTI 83 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC-TTC--EEEEEESSCCTTTCSCCEE
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC-CCc--EEEEEECCCChhhCEEEEE
Confidence 4777877788888999999999999999999999999999888753 34443332 122 2479999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEeecc
Q psy670 285 NVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~~~ 305 (540)
.+.|..|.....+.|.|...+
T Consensus 84 ~a~N~~g~~~~~~~l~V~~~~ 104 (110)
T 2dm2_A 84 MAANPQGRISCTGRLMVQAVN 104 (110)
T ss_dssp EEECTTCCEEECCCEEEECCS
T ss_pred EEEECCCeEEEEEEEEEECCC
Confidence 999999998888888887643
No 455
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.32 E-value=4e-11 Score=112.83 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=104.9
Q ss_pred ceeecCCCCeEEEEEEecccC--------------CCeEEEEeC--CE--Eee---ccC---------c-eEEEEe-cC-
Q psy670 215 RIIPNESGTLIQMKCKCSAKP--------------RPEVKWFKA--DK--LVK---ESS---------K-IKIIVN-EQ- 261 (540)
Q Consensus 215 ~~~~~~~g~~~~l~C~~~~~p--------------~~~v~W~~~--~~--~l~---~~~---------~-~~~~~~-~~- 261 (540)
..+.+..|++++|.|.....+ ...+.|++. |+ .+. .+. . ..+... ..
T Consensus 166 ~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~ 245 (401)
T 3f8u_B 166 PAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDE 245 (401)
T ss_dssp SSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCC
T ss_pred CcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecccc
Confidence 345677899999999986432 346999873 32 111 110 0 111111 01
Q ss_pred ---CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEE-eeCCC-eEEEEEEEE
Q psy670 262 ---DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS-EQGGK-LVVMECKVK 336 (540)
Q Consensus 262 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~-~~~g~-~v~l~C~~~ 336 (540)
......+|.|.+++.+|.|.|.|.+.+..+.....+.+.|.. +|.+...+.... ...|+ .++|.|.+.
T Consensus 246 ~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~-------pP~V~v~p~~~~~~~~G~~~vtL~C~a~ 318 (401)
T 3f8u_B 246 PWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK-------PPKVSLMPATLARAAPGEAPPELLCLVS 318 (401)
T ss_dssp SSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEESSSCCCCCTTCCCCCEEEEEE
T ss_pred cccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc-------CCeEeeccCcceeecCCCccEEEEEEec
Confidence 123457999999999999999999998877666667777765 555554443332 34676 799999999
Q ss_pred cc-CC--CeEEEE-ECCE---EccCCCce---EEEEEecCCe-eEEEEEEcCCCCCC-CeeEEEEEEcCC
Q psy670 337 AK-PM--PEIVWF-HEGK---ELQQTDRI---SWNVTLKGDK-YHIRLEVKDPRKED-TGLYKCNIKNFH 394 (540)
Q Consensus 337 ~~-p~--~~i~W~-~~~~---~~~~~~~~---~~~~~~~~~~-~~~~L~i~~~~~~d-~G~Y~C~a~n~~ 394 (540)
+. |. +.|.|. +++. .+...... ......++.. ..+.|.+...+.++ .+.|+|.+.|..
T Consensus 319 GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s 388 (401)
T 3f8u_B 319 HFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388 (401)
T ss_dssp EEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred CCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence 84 65 689995 7752 11111100 0011122222 23357766654334 459999999976
No 456
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.32 E-value=8.1e-12 Score=95.02 Aligned_cols=93 Identities=27% Similarity=0.458 Sum_probs=77.5
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+..... ...|.|.+++.+|+|.|+|.+
T Consensus 6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG----GFFLEIHKTDTSDSGLYTCTV 81 (99)
T ss_dssp EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETT----EEEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCC----EEEEEECCCCcccCEEEEEEE
Confidence 5667777777888899999999999999999999999999988776665543321 247999999999999999999
Q ss_pred EcCCCCeeeeEEEEEee
Q psy670 287 KNEFGESNANLNLNIEA 303 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~ 303 (540)
.|..|.....+.|.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 82 KNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEeEEEEEEEEe
Confidence 99999888887777753
No 457
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.32 E-value=2.7e-12 Score=93.55 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=63.6
Q ss_pred ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 398 (540)
..+.+.+|+.+.|.|.+.+ |.|.|.|+++|..+..+.++.+.. ++.. .+|.|.++..+|+|.|+|.|.|. .
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~--~~~~--~~L~I~~~~~~D~G~Y~C~a~n~----~ 74 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ--AGAR--QVLRVQGARSGDAGEYLCDAPQD----S 74 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE--CSSC--EEEEESSCSSTTCEEEEEECTTT----C
T ss_pred eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee--cCCe--EEEEecCCCCcccEEEEEEECCE----E
Confidence 4567889999999999865 888999999999998887766543 3332 27999999999999999998664 4
Q ss_pred EEEEEEEEE
Q psy670 399 ANLTLNIEM 407 (540)
Q Consensus 399 ~~~~l~V~~ 407 (540)
.++.|.|..
T Consensus 75 ~~a~l~V~e 83 (84)
T 2lu7_A 75 RIFLVSVEE 83 (84)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEEC
Confidence 556666653
No 458
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.32 E-value=9.8e-12 Score=94.75 Aligned_cols=93 Identities=26% Similarity=0.481 Sum_probs=75.1
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc--CceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES--SKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 283 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+... . ....|.|.+++.+|+|.|+
T Consensus 4 ~pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~--~~~~L~i~~v~~~D~G~Y~ 79 (100)
T 3irg_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT--D--DLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC--S--SEEEEEESSCCGGGCEEEE
T ss_pred CCCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEec--C--CEEEEEEeecCcccCEEEE
Confidence 3677777777888899999999999999999999999999988633 33333222 1 1347999999999999999
Q ss_pred EEEEcCCCCeeeeEEEEEe
Q psy670 284 CNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 284 C~~~~~~~~~~~~~~l~v~ 302 (540)
|.+.|..|.....+.|.|.
T Consensus 80 C~a~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 80 LSLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEeCCCcEEEEEEEEEE
Confidence 9999999988777777765
No 459
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3e-12 Score=99.62 Aligned_cols=98 Identities=31% Similarity=0.554 Sum_probs=81.7
Q ss_pred CCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 205 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
.++|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............. ...|.|.+++.+|+|.|+|
T Consensus 7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG---VHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTS---CEEEEESSCCGGGCSBBCE
T ss_pred CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCC---eEEEEEeeCCcccCEEEEE
Confidence 4578888888888999999999999999999999999999988876655544433222 2479999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEeecc
Q psy670 285 NVKNEFGESNANLNLNIEAEA 305 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~~~ 305 (540)
.+.|..|.....+.|.|...+
T Consensus 84 ~a~n~~g~~~~~~~l~V~~~p 104 (110)
T 2dm3_A 84 IATNRAGQNSFSLELVVAAKE 104 (110)
T ss_dssp EEECSSCEEEECCEEEEECCC
T ss_pred EEECCCCEEEEEEEEEEeCCC
Confidence 999999988888888887744
No 460
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.31 E-value=1.7e-11 Score=97.25 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=65.2
Q ss_pred ceEEeeCCCeEEEEEEEEcc--CCCeEEEEECCEEccC-----CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670 319 KIRSEQGGKLVVMECKVKAK--PMPEIVWFHEGKELQQ-----TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391 (540)
Q Consensus 319 ~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 391 (540)
....+.+|+.+.|.|.+.|. |.+.+.|++++..+.. ....... ........++|.|.+++.+|+|.|+|.|.
T Consensus 16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 94 (122)
T 3s35_X 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS-GSEMKKFLSTLTIDGVTRSDQGLYTCAAS 94 (122)
T ss_dssp SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE-ETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc-CCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence 34577889999999999984 4568999998874421 1111100 00001123489999999999999999999
Q ss_pred cCCeeeEEEEEEEEEE
Q psy670 392 NFHGELNANLTLNIEM 407 (540)
Q Consensus 392 n~~g~~~~~~~l~V~~ 407 (540)
|..|....++.|.|..
T Consensus 95 n~~g~~~~~~~l~V~~ 110 (122)
T 3s35_X 95 SGLMTKKNSTFVRVHE 110 (122)
T ss_dssp CSSCEEEEEEEEEEEE
T ss_pred cCCCceEEEEEEEEec
Confidence 9999999999999988
No 461
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.31 E-value=4e-12 Score=92.59 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=55.4
Q ss_pred cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670 8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87 (540)
Q Consensus 8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~ 87 (540)
+.|.+.| |. |.+.|||||.+|..+.++++...... ++|+|.+++.+|+|.|+|.|.| .+.++.
T Consensus 16 l~C~vs~-p~------p~v~W~k~g~~l~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~ 78 (84)
T 2lu7_A 16 LVVHLSG-PG------GPVRWYKDGERLASQGRVQLEQAGAR------QVLRVQGARSGDAGEYLCDAPQ----DSRIFL 78 (84)
T ss_dssp EECCCSC-CS------TTCEEEETTEECCCCSSEEEEECSSC------EEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred EEEEECC-CC------cEEEEEECCEEccccccEEEeecCCe------EEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence 5688765 76 88999999999999999888765443 6899999999999999998844 456677
Q ss_pred EEEee
Q psy670 88 LNFSE 92 (540)
Q Consensus 88 l~v~~ 92 (540)
|.|..
T Consensus 79 l~V~e 83 (84)
T 2lu7_A 79 VSVEE 83 (84)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 77753
No 462
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.31 E-value=4e-12 Score=98.51 Aligned_cols=92 Identities=24% Similarity=0.403 Sum_probs=68.5
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... .. ..|.|.+++.+|+|.|+|.+
T Consensus 10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~----~~L~i~~v~~~D~G~Y~C~a 83 (108)
T 3kvq_A 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GN----RNLTIRRVRKEDEGLYTCQA 83 (108)
T ss_dssp -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--TT----TEEEECSCCGGGCEEEEEEE
T ss_pred CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--CC----cEEEEeecCcccCEEEEEEE
Confidence 7777777888888999999999999999999999999998887655543321 11 26999999999999999999
Q ss_pred EcCCCCeeeeEEEEEeec
Q psy670 287 KNEFGESNANLNLNIEAE 304 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~~ 304 (540)
.|..|.....+.|.|...
T Consensus 84 ~n~~g~~~~~~~l~V~~~ 101 (108)
T 3kvq_A 84 CSVLGCAKVEAFFIIEGA 101 (108)
T ss_dssp C----CEEEEEEEEEEC-
T ss_pred EeCCCceEEEEEEEEeCC
Confidence 999999888888888763
No 463
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.31 E-value=2.5e-11 Score=103.04 Aligned_cols=164 Identities=14% Similarity=0.155 Sum_probs=102.4
Q ss_pred CCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 317 KPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
.|....+..|+++.|+|.+.. +.+ .+.|.-.-. + .....+... ..+.|.+++ +|.+.|.|.+.....
T Consensus 8 ~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~------~---~~~~~g~~~-~~~~ls~vs-~d~~~~~C~~~c~~~ 75 (196)
T 3bn3_B 8 QPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLR------R---NGTQRGLRW-LARQLVDIR-EPETQPVCFFRCARR 75 (196)
T ss_dssp ESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSE------E---EEEEEETTE-EEEEEEEEC-SSEECCEEEEEETTE
T ss_pred cCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccC------C---eeEccccCc-eEEEEEEEc-cCCCceEEEEECCCC
Confidence 345567899999999999964 444 677753211 0 001111111 147888888 787879999877667
Q ss_pred eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEE
Q psy670 396 ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIE 475 (540)
Q Consensus 396 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~ 475 (540)
...+++.|.|...| ..+.|...+ ..+.+|+.++|.
T Consensus 76 ~~~~~v~l~Vy~~P-------------------------------------------~~v~i~~~~--~~~~~G~~~tL~ 110 (196)
T 3bn3_B 76 TLQARGLIRTFQRP-------------------------------------------DRVELMPLP--PWQPVGENFTLS 110 (196)
T ss_dssp EEEEECEEEEEBCC-------------------------------------------CCCEECCCC--SSEETTSEEEEE
T ss_pred ceEEEEEEEEecCC-------------------------------------------CcCEEccCC--ccccCCCcEEEE
Confidence 77888888887621 122333322 236789999999
Q ss_pred EEEeeecC-Cc--eEEEecCeecCCC-------------CeEEEEEEecCCe-EEEEEEeeeee-------eeeCCeeEE
Q psy670 476 CKVMSMYE-PS--VTWMKEKNTVKED-------------NKHVVHIEQVKDV-SMNFELWLGIV-------EKRGPSIKI 531 (540)
Q Consensus 476 C~v~g~p~-~~--v~W~~~~~~l~~~-------------~~~~~~~~~~~~g-~y~c~~~~~~~-------~~~~~~~~~ 531 (540)
|.+.|..+ .. |+|||+++.+... ....+...+.|.| .|+|++.+.-. +.......+
T Consensus 111 C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~~~G~~l~~~~s~p~~L 190 (196)
T 3bn3_B 111 CRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSSAPREL 190 (196)
T ss_dssp EEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECGGGTSCEEEEECCCEEC
T ss_pred EEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCCccCCCccccccCCeEE
Confidence 99998544 44 7999999876411 1123344455555 99999996433 223333444
Q ss_pred EEEecc
Q psy670 532 IYYIAP 537 (540)
Q Consensus 532 ~~~~~~ 537 (540)
-+|+.|
T Consensus 191 ~v~~~~ 196 (196)
T 3bn3_B 191 RTFSLS 196 (196)
T ss_dssp CEECCC
T ss_pred EEeecC
Confidence 456554
No 464
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=94.57 Aligned_cols=91 Identities=23% Similarity=0.378 Sum_probs=74.7
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C 284 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ..... ... ..|.|.+++.+|+|.|+|
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--~~~-----~~L~i~~v~~~d~G~Y~C 79 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--QEQ-----GTLQIKNLRISDTGTYTC 79 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE--CTT-----CCEEEESCCTTTCCEEEE
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE--cCC-----CEEEEccCCcccCEEEEE
Confidence 4778877788888899999999999999999999999999887632 22222 111 169999999999999999
Q ss_pred EEEcCCCCeeeeEEEEEee
Q psy670 285 NVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 285 ~~~~~~~~~~~~~~l~v~~ 303 (540)
.+.|..|.....+.|.|..
T Consensus 80 ~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2edj_A 80 VATSSSGETSWSAVLDVTE 98 (100)
T ss_dssp EEECSSCCCBCCEEEEEES
T ss_pred EEEcCCCCEEEEEEEEEec
Confidence 9999999888888888764
No 465
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.30 E-value=7.5e-12 Score=100.88 Aligned_cols=84 Identities=21% Similarity=0.497 Sum_probs=67.5
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCC----------------------------Eee-cCCCceEEEEeecCcce
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGT----------------------------KVI-EDTGRIKMSKKSIGKDT 160 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~----------------------------~~~-~~~~~~~~~~~~~~~~~ 160 (540)
....+.+|+.++|.|.+.|.|.|.+.|+|++ ..+ ....+..+... .
T Consensus 26 ~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~-----~ 100 (139)
T 1gxe_A 26 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT-----K 100 (139)
T ss_dssp CEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEE-----T
T ss_pred CCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeC-----C
Confidence 4567899999999999999999999999988 443 23334444321 1
Q ss_pred EEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy670 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198 (540)
Q Consensus 161 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 198 (540)
..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 101 ~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 101 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 13489999999999999999999999999888888875
No 466
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=94.33 Aligned_cols=78 Identities=18% Similarity=0.439 Sum_probs=60.4
Q ss_pred CCeEEeCCceE--EeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 311 PPTFIEKPKIR--SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 311 ~p~~~~~~~~~--~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
|+.++..+... .+.+|+.+.|.|.+.+ |.+.+.|++||..+..+.++.+.. ++.. .+|.|.++..+|+|.|+|
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~--~~~~--~~L~I~~v~~~D~G~Y~C 78 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLEN--EGPH--RRLVLPATQPSDGGEFQC 78 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEE--ETTE--EEEEESSCCGGGCSEEEE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEe--cCCe--EEEEeCCCChhhcEEEEE
Confidence 44555444443 3468999999999855 888999999999998887766543 3332 379999999999999999
Q ss_pred EEEcC
Q psy670 389 NIKNF 393 (540)
Q Consensus 389 ~a~n~ 393 (540)
.|.|.
T Consensus 79 ~a~n~ 83 (91)
T 2lvc_A 79 VAGDE 83 (91)
T ss_dssp ECSSC
T ss_pred EEcce
Confidence 99764
No 467
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.29 E-value=3e-11 Score=102.51 Aligned_cols=160 Identities=10% Similarity=0.123 Sum_probs=104.5
Q ss_pred CccccCCCeEEEEEEEeecCCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 111 PTIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
...|.+|+++.|+|.+. -+.+ .+.|.-.-.. ..... +. ....+.|.+++ +|++.|.|.+.......
T Consensus 11 ~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~-------~~~~~--g~--~~~~~~ls~vs-~d~~~~~C~~~c~~~~~ 77 (196)
T 3bn3_B 11 VAFVERGGSLWLNCSTN-CPRPERGGLETSLRR-------NGTQR--GL--RWLARQLVDIR-EPETQPVCFFRCARRTL 77 (196)
T ss_dssp EEEEETTEEEEEEEEEC-CSSCSEEEEECSSEE-------EEEEE--ET--TEEEEEEEEEC-SSEECCEEEEEETTEEE
T ss_pred CcEEcCCCeEEEEEeCC-CCCCCccEEEEccCC-------eeEcc--cc--CceEEEEEEEc-cCCCceEEEEECCCCce
Confidence 35689999999999995 4445 6788532110 00000 01 11258899988 78888999987766667
Q ss_pred EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCe--EEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670 190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPE--VKWFKADKLVKESSKIKIIVNEQDDTYE 266 (540)
Q Consensus 190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (540)
...+.|.|+..+. .+.+. +....+.+|+.++|.|.+.+ +|... |.|++++..+...... ..........
T Consensus 78 ~~~v~l~Vy~~P~----~v~i~--~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~--~~~~~~~~~t 149 (196)
T 3bn3_B 78 QARGLIRTFQRPD----RVELM--PLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFA--GEPPRARGAV 149 (196)
T ss_dssp EEECEEEEEBCCC----CCEEC--CCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECT--TSCTTCCCEE
T ss_pred EEEEEEEEecCCC----cCEEc--cCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccc--ccccccccee
Confidence 8889999987443 22332 22223668999999999987 66655 8999999988543210 0000111244
Q ss_pred EEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 267 IICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 267 ~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
+++.+.....++...|+|+|.+..+
T Consensus 150 ~~~~~~~~r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 150 LTATVLARREDHGANFSCRAELDLR 174 (196)
T ss_dssp EEEEEECCGGGTTCEEEEEEEEECG
T ss_pred EEEEEeeeeccCCCeEEEEEEccCC
Confidence 5677776666666699999998765
No 468
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.29 E-value=1.5e-11 Score=102.07 Aligned_cols=95 Identities=31% Similarity=0.533 Sum_probs=79.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...... ...|.|.+++..|+|.|+|.+
T Consensus 41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a 117 (154)
T 1fhg_A 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCKA 117 (154)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCC---eEEEEECCCChhcCEEEEEEE
Confidence 67777777778889999999999999999999999999999887766655433221 258999999999999999999
Q ss_pred EcCCCCeeeeEEEEEeec
Q psy670 287 KNEFGESNANLNLNIEAE 304 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~~ 304 (540)
.|..|.....+.|.|...
T Consensus 118 ~N~~G~~~~~~~l~V~~~ 135 (154)
T 1fhg_A 118 VNSLGEATCTAELLVETM 135 (154)
T ss_dssp EETTEEEEEEEEEEEECC
T ss_pred EECCCeEEEEEEEEEeCc
Confidence 999999888888888763
No 469
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.28 E-value=5.7e-11 Score=91.81 Aligned_cols=96 Identities=23% Similarity=0.371 Sum_probs=72.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeec---cCceEEEE--ecCCCeEEEEEEEeCCCCCC
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKE---SSKIKIIV--NEQDDTYEIICEITDPIGPD 278 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~---~~~~~~~~--~~~~~~~~~~l~i~~~~~~d 278 (540)
.|.|...|....+.+|+.++|.|.+.+.|. +.|.|++++..... ...+.+.. ..........|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 567777888888999999999999999888 89999998733221 12232221 11223345689999999999
Q ss_pred cEEEEEEEEcCCCCeeeeEEEEEe
Q psy670 279 SGTYRCNVKNEFGESNANLNLNIE 302 (540)
Q Consensus 279 ~g~y~C~~~~~~~~~~~~~~l~v~ 302 (540)
+|.|+|.+.|..|.....+.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999998888888874
No 470
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.2e-11 Score=93.97 Aligned_cols=79 Identities=22% Similarity=0.442 Sum_probs=65.1
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+.+.|.|.+.|.|.+.+.|++++..+........ .....|.|.++..+|+|.|+|.+.|..|...
T Consensus 20 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~ 91 (99)
T 2yr3_A 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE--------AGVAELHIQDALPEDHGTYTCLAENALGQVS 91 (99)
T ss_dssp CEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEE--------TTEEEEEECSCCTTCCBCEEEEEECSSCEEE
T ss_pred CCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEee--------CCeEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence 45688999999999999999999999999988865432211 1124899999999999999999999999887
Q ss_pred EEEEEEE
Q psy670 191 ANIALNF 197 (540)
Q Consensus 191 ~~~~l~v 197 (540)
..+.|.|
T Consensus 92 ~~~~l~V 98 (99)
T 2yr3_A 92 CSAWVTV 98 (99)
T ss_dssp EECCEEE
T ss_pred EEEEEEE
Confidence 7777766
No 471
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.28 E-value=1.4e-11 Score=93.88 Aligned_cols=84 Identities=23% Similarity=0.386 Sum_probs=66.0
Q ss_pred CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670 110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189 (540)
Q Consensus 110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 189 (540)
....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+........ .. ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 91 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-QH---WSLIMESVVPSDKGNYTCVVENEYGSI 91 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG-GG---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec-Ce---EEEEEccCCcCCCEEEEEEEEeCCCEE
Confidence 34568899999999999999999999999999886543321111100 11 279999999999999999999999998
Q ss_pred EEEEEEEE
Q psy670 190 NANIALNF 197 (540)
Q Consensus 190 ~~~~~l~v 197 (540)
...+.|.|
T Consensus 92 ~~~~~l~V 99 (100)
T 3caf_A 92 NHTYHLDV 99 (100)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88887776
No 472
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=93.42 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=73.8
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.|...+....+.+|+.+.|.|.+ .|.+.+.|+++|..+....++.+.... ....|.|.+++.+|+|.|+|.|
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~----~~~~L~I~~v~~~D~G~Y~C~a 80 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKG----RIHKLVIANALTEDEGDYVFAP 80 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECS----SEEEEEESSCCGGGCSEEEEEE
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeC----CEEEEEECCCChhhCEEEEEEE
Confidence 6778888888899999999999999 788899999999999877776654432 1247999999999999999999
Q ss_pred EcCCCCeeeeEEEEEee
Q psy670 287 KNEFGESNANLNLNIEA 303 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~ 303 (540)
.|. ....++.|.|..
T Consensus 81 ~N~--~~~~~a~L~V~~ 95 (100)
T 2yuz_A 81 DAY--NVTLPAKVHVIS 95 (100)
T ss_dssp SSS--CCCEEEEEEEEC
T ss_pred cCC--CeeEEEEEEEeC
Confidence 997 455667777765
No 473
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.28 E-value=1.2e-11 Score=95.64 Aligned_cols=93 Identities=26% Similarity=0.458 Sum_probs=76.9
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+
T Consensus 13 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a 88 (107)
T 3irg_B 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG----AEHGLLLTAALPTDAGVYVCRA 88 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEET----TEEEEEESSCCGGGCEEEEEEE
T ss_pred CCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCC----CEEEEEEccCCHHhCEEEEEEE
Confidence 677777777888899999999999999999999999999988766655443221 1237999999999999999999
Q ss_pred EcCCCCeeeeEEEEEee
Q psy670 287 KNEFGESNANLNLNIEA 303 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v~~ 303 (540)
.|..|.....+.|.|..
T Consensus 89 ~n~~g~~~~~~~l~V~~ 105 (107)
T 3irg_B 89 RNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EcCCCcEEEEEEEEEEc
Confidence 99999888777777764
No 474
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.27 E-value=4.6e-12 Score=97.53 Aligned_cols=93 Identities=25% Similarity=0.537 Sum_probs=78.1
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
..|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 88 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK----YKSTFEISSVQASDEGNYSVV 88 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECS----SEEEEEECCCCSSCCSEEEEC
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECC----CEEEEEECcCCchhCEEEEEE
Confidence 4677888888899999999999999999999999999999888766665554321 134899999999999999999
Q ss_pred EEcCCCCeeeeEEEEEe
Q psy670 286 VKNEFGESNANLNLNIE 302 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~ 302 (540)
+.|..|.....+.|.|.
T Consensus 89 a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 89 VENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CBCSSCBCCEEEEEEEC
T ss_pred EEeCCCeEEEEEEEEEE
Confidence 99999988877777763
No 475
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.27 E-value=7.5e-11 Score=104.61 Aligned_cols=163 Identities=17% Similarity=0.259 Sum_probs=97.3
Q ss_pred CccccCCCeEEEEEEEeecC--CCceEEEeC--CE---eec---------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670 111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TK---VIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 174 (540)
...+.+|++++|.|.+.+.+ ...+.|||. +. .+. ...++.+..+ .....++|.|.+++.+|
T Consensus 10 ~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~~D 86 (229)
T 1hxm_A 10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID---IAKNLAVLKILAPSERD 86 (229)
T ss_dssp EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE---GGGTEEEEEESSCCGGG
T ss_pred EEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEc---CCCCEEEEEECcCCHhH
Confidence 45688999999999997554 357999984 21 111 1234444332 12233589999999999
Q ss_pred CeEEEEEEEcCC------ce--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670 175 GGNYRCNACNSI------GE--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA 244 (540)
Q Consensus 175 ~G~Y~C~~~~~~------~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~ 244 (540)
+|.|.|.+.+.. +. -.....|.|...... ..+|.+.. ...+ +.|.|.+.+ +|.+ .|.|+++
T Consensus 87 sg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~-~~~P~v~~------~~~~--~~L~C~~~g~~P~~i~v~W~~~ 157 (229)
T 1hxm_A 87 EGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQP-HTKPSVFV------MKNG--TNVACLVKEFYPKDIRINLVSS 157 (229)
T ss_dssp CEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCC-CBCCEEEE------EEET--TEEEEEEESCBSSCCEEEEECS
T ss_pred CeEEEEEEecCCCcccccchhhcCccEEEEEeccCCC-CcCCcEEE------cCCC--CeEEEEEEEEeCCCEEEEEecC
Confidence 999999998753 11 112346666632110 11333221 1112 489999988 5654 8999999
Q ss_pred CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670 245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291 (540)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 291 (540)
..+...... ... ..++.+... .....++.|.|+|.+.+..+
T Consensus 158 -~~~~~~~~~-~~~-~~dg~y~~~---~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 158 -KKITEFDPA-IVI-SPSGKYNAV---KLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp -SEEEECCCE-EEE-CTTSSEEEE---EEEEETTTTTCEEEEEETTE
T ss_pred -CEEecCccc-eEE-CCCCcEEEE---ECcccCCCCcEEEEEEeCCC
Confidence 766543221 112 233443322 11223578899999999753
No 476
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=1e-11 Score=118.89 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=67.3
Q ss_pred CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC--ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD--RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
+....+.+|+.+.|.|.+.| |.|.+.|++++..+.... ..+... .++ +|.|.+++.+|+|.|+|.|.|..|
T Consensus 253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~-----~L~I~~v~~~D~G~Y~C~a~N~~g 325 (361)
T 2xot_A 253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG-----DLFFKKVQVEDGGVYTCYAMGETF 325 (361)
T ss_dssp CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETT-----EEEESSCCTTSCEEEEEEEECSSC
T ss_pred ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecC-----eEEEeecCcccCEEEEEEEecCCC
Confidence 34567889999999999998 999999999876553322 112222 233 799999999999999999999999
Q ss_pred eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEE
Q psy670 396 ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIE 475 (540)
Q Consensus 396 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~ 475 (540)
....++.|.|.. .+ .+|+.++|.
T Consensus 326 ~~~~~~~l~V~~----------------------------------------------~~-----------~~g~~~~l~ 348 (361)
T 2xot_A 326 NETLSVELKVYN----------------------------------------------FT-----------LHGHHDTLN 348 (361)
T ss_dssp EEEEEEEEEEES----------------------------------------------SC-----------CC-------
T ss_pred ccEEEEEEEEEe----------------------------------------------ee-----------ccCCceEEE
Confidence 998888888754 22 568889999
Q ss_pred EEEeeecCCceE
Q psy670 476 CKVMSMYEPSVT 487 (540)
Q Consensus 476 C~v~g~p~~~v~ 487 (540)
|.+.|.|+|+|+
T Consensus 349 C~~~g~P~P~i~ 360 (361)
T 2xot_A 349 AAADPWSHPQFE 360 (361)
T ss_dssp ------------
T ss_pred EEeCCCCCCccc
Confidence 999999999864
No 477
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.26 E-value=1.6e-11 Score=92.38 Aligned_cols=86 Identities=21% Similarity=0.424 Sum_probs=71.5
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
+|.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+....+..+. . ..|.|.+++.+|+|.|+|.+
T Consensus 9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~----~~L~i~~~~~~D~G~Y~C~a 79 (95)
T 2ckn_A 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----G----EEVEVRDSIPADSGLYACVT 79 (95)
T ss_dssp SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----S----SEEEESSCCGGGSEEEEEEE
T ss_pred CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----C----CEEEECCCChHHCEEEEEEe
Confidence 66777777788899999999999999987 799999999888766554332 1 27999999999999999999
Q ss_pred EcCCCCeeeeEEEEE
Q psy670 287 KNEFGESNANLNLNI 301 (540)
Q Consensus 287 ~~~~~~~~~~~~l~v 301 (540)
.|..|.....+.|.|
T Consensus 80 ~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 80 SSPSGSDTTYFSVNV 94 (95)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEE
Confidence 999888777776665
No 478
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.26 E-value=2.4e-11 Score=93.02 Aligned_cols=90 Identities=17% Similarity=0.350 Sum_probs=69.5
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
++.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+......+.....++. ...|.|.+++.+|+|.|+|.|
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a 83 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK--KHILIIEGATKADAAEYSVMT 83 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETT--EEEEEEEEECTTTCSEEEEEE
T ss_pred CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCC--EEEEEECCCCcccCEEEEEEE
Confidence 334666677788999999999999977 77899999999999877633222223332 238999999999999999999
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
.| ...++.|.|..
T Consensus 84 ~n----~~~~~~l~V~~ 96 (103)
T 1x44_A 84 TG----GQSSAKLSVDL 96 (103)
T ss_dssp TT----EEEEEEEEEEC
T ss_pred CC----CcEEEEEEEeC
Confidence 88 46667777766
No 479
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=100.13 Aligned_cols=90 Identities=17% Similarity=0.284 Sum_probs=72.1
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
++.+...+....+.+|+.+.|.|.+.+.|.|.+.|+++|..+....++.+... .+. ...|.|.+++.+|+|.|+|.+
T Consensus 13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~-~~~--~~~L~I~~v~~~D~G~Y~C~~ 89 (115)
T 2cr6_A 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ-PGG--YHVLTLRQLALKDSGTIYFEA 89 (115)
T ss_dssp CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCB-TTT--BCCBEECSCCTTTCEEEEEEE
T ss_pred CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEc-CCC--EEEEEEcCCChhhCEEEEEEE
Confidence 45677778888999999999999999999999999999999877665443211 122 127999999999999999994
Q ss_pred EcCCeeeEEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIEM 407 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~~ 407 (540)
|....++.|.|..
T Consensus 90 ----g~~~~~~~L~V~~ 102 (115)
T 2cr6_A 90 ----GDQRASAALRVTE 102 (115)
T ss_dssp ----TTEECCEEEEEEC
T ss_pred ----CCeeEEEEEEEEC
Confidence 5566678888877
No 480
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.25 E-value=4.1e-11 Score=89.36 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=70.2
Q ss_pred CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285 (540)
Q Consensus 206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 285 (540)
.++.|...+....+.+|+.+.|.|.+.+ +.+.+.|+++|..+....++.+..... ...|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~----~~~L~I~~v~~~D~G~Y~C~ 78 (93)
T 1waa_A 4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGK----KHILILHNCQLGMTGEVSFQ 78 (93)
T ss_dssp CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETT----EEEEEECSCCGGGCEEEEEE
T ss_pred CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECC----EEEEEECCCChhhCEEEEEE
Confidence 3677888888889999999999999976 457899999999998777766544321 24799999999999999999
Q ss_pred EEcCCCCeeeeEEEEEe
Q psy670 286 VKNEFGESNANLNLNIE 302 (540)
Q Consensus 286 ~~~~~~~~~~~~~l~v~ 302 (540)
|.|. ..+..|.|.
T Consensus 79 a~n~----~~sa~L~V~ 91 (93)
T 1waa_A 79 AANT----KSAANLKVK 91 (93)
T ss_dssp ETTE----EEEEEEEEE
T ss_pred ECCC----cEEEEEEEE
Confidence 9874 345566654
No 481
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.25 E-value=2.3e-10 Score=101.43 Aligned_cols=157 Identities=13% Similarity=0.208 Sum_probs=93.8
Q ss_pred EeCCceEEeeCCCeEEEEEEEEccC--CCeEEEEECC--EE---cc---------CCCceEEEEEecCCeeEEEEEEcCC
Q psy670 315 IEKPKIRSEQGGKLVVMECKVKAKP--MPEIVWFHEG--KE---LQ---------QTDRISWNVTLKGDKYHIRLEVKDP 378 (540)
Q Consensus 315 ~~~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~L~i~~~ 378 (540)
...+....+.+|++++|.|.+.+.+ ...+.|++.. .. +. ...++..... .......|.|.++
T Consensus 5 ~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~--~~~~~~sL~I~~v 82 (229)
T 1hxm_A 5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID--IAKNLAVLKILAP 82 (229)
T ss_dssp EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE--GGGTEEEEEESSC
T ss_pred EeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEc--CCCCEEEEEECcC
Confidence 3445667789999999999998654 4679999842 11 10 0233333222 1222348999999
Q ss_pred CCCCCeeEEEEEEcCCe------e--eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeee
Q psy670 379 RKEDTGLYKCNIKNFHG------E--LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLT 450 (540)
Q Consensus 379 ~~~d~G~Y~C~a~n~~g------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (540)
+.+|+|.|.|.+.+..+ . ......|.|.... .
T Consensus 83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~----------------------------------------~ 122 (229)
T 1hxm_A 83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRS----------------------------------------Q 122 (229)
T ss_dssp CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCS----------------------------------------C
T ss_pred CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccC----------------------------------------C
Confidence 99999999999987631 1 1122355554300 0
Q ss_pred eeeeceeecCCcEEEecCCCeEEEEEEEeee-cCC-ceEEEecCeecCC---------CCeEEEE-EEe-cCCeEEEEEE
Q psy670 451 LSVVPVIREVPKVVTISKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKE---------DNKHVVH-IEQ-VKDVSMNFEL 517 (540)
Q Consensus 451 ~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~---------~~~~~~~-~~~-~~~g~y~c~~ 517 (540)
...+|.+.... ..++|.|.+.|. |++ .|+|+++ ..+.. +..+.+. ... .+.|.|+|.+
T Consensus 123 ~~~~P~v~~~~--------~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V 193 (229)
T 1hxm_A 123 PHTKPSVFVMK--------NGTNVACLVKEFYPKDIRINLVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSV 193 (229)
T ss_dssp CCBCCEEEEEE--------ETTEEEEEEESCBSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEE
T ss_pred CCcCCcEEEcC--------CCCeEEEEEEEEeCCCEEEEEecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEE
Confidence 01133333211 124899999985 444 8999999 66532 2233332 222 4678899988
Q ss_pred eeeee
Q psy670 518 WLGIV 522 (540)
Q Consensus 518 ~~~~~ 522 (540)
.....
T Consensus 194 ~h~~~ 198 (229)
T 1hxm_A 194 QHDNK 198 (229)
T ss_dssp EETTE
T ss_pred EeCCC
Confidence 86543
No 482
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=1.4e-11 Score=94.88 Aligned_cols=91 Identities=21% Similarity=0.367 Sum_probs=73.3
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.+|.+...+....+.+|+.+.|.|.+.+.|.+ +.|+++|..+....++.+. .++. ...|.|.+++.+|+|.|+|.
T Consensus 7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~ 81 (106)
T 2dlt_A 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITIS--HVGR--FHKLVIDDVRPEDEGDYTFV 81 (106)
T ss_dssp CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEE--EETT--EEEEEESSCCTTTCSCEEEE
T ss_pred CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEE--EeCC--EEEEEECCCCcCCCEEEEEE
Confidence 37788888888999999999999999988877 9999999998877766543 2232 23899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.|. ....++.|.|..
T Consensus 82 a~n~--~~~~~~~l~V~~ 97 (106)
T 2dlt_A 82 PDGY--ALSLSAKLNFLE 97 (106)
T ss_dssp EETS--CCCCCBCEEEEC
T ss_pred EccC--CceEEEEEEEEE
Confidence 9998 444555666654
No 483
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.8e-11 Score=93.84 Aligned_cols=89 Identities=17% Similarity=0.394 Sum_probs=72.8
Q ss_pred CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
.+|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+....++.+. .++. ...|.|.+++.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2edf_A 7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVV--CEGT--MAMLVIRGASLKDAGEYTCE 81 (103)
T ss_dssp CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEE--EETT--EEEEEESSCCTTTCSEEEEE
T ss_pred CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEE--ECCC--EEEEEECCCCcccCEEEEEE
Confidence 3777888888889999999999999987 78899999999998777665543 2333 34899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.| ...++.|.|..
T Consensus 82 a~n----~~~~~~l~V~~ 95 (103)
T 2edf_A 82 VEA----SKSTASLHVEE 95 (103)
T ss_dssp CSS----CEEEEEEEECC
T ss_pred Ecc----CCcEEEEEEeC
Confidence 999 35667777765
No 484
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.24 E-value=1.3e-11 Score=97.04 Aligned_cols=97 Identities=23% Similarity=0.545 Sum_probs=70.1
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .......++......|.+.+++.+|+|.|+
T Consensus 9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~ 88 (117)
T 2v9t_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88 (117)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEE
T ss_pred CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEE
Confidence 67777778888899999999999999999999999999998875431 111222233222222333366889999999
Q ss_pred EEEEcCCeeeE-EEEEEEEEE
Q psy670 388 CNIKNFHGELN-ANLTLNIEM 407 (540)
Q Consensus 388 C~a~n~~g~~~-~~~~l~V~~ 407 (540)
|.|.|..|... ..+.|.+..
T Consensus 89 C~a~N~~G~~~s~~~~l~~~~ 109 (117)
T 2v9t_A 89 CVARNYLGEAVSHDASLEVAA 109 (117)
T ss_dssp EEEEETTEEEECCCEEEEEC-
T ss_pred EEEEeCccceEeeeEEEEhhh
Confidence 99999999764 455666654
No 485
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.24 E-value=4.6e-11 Score=90.88 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCeEEeCCce-EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 311 PPTFIEKPKI-RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 311 ~p~~~~~~~~-~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
+|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|+++|..+....++.+. .++.. ..|.|.+++.+|+|.|+|.
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~--~~~~~--~~L~I~~~~~~D~G~Y~C~ 81 (100)
T 2yuv_A 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFE--HKGCQ--RILFINNCQMTDDSEYYVT 81 (100)
T ss_dssp SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEE--EETTE--EEEEEEEECTTTCCEEEEE
T ss_pred CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEE--ecCCE--EEEEEcCCCcCcCEEEEEE
Confidence 6777776665 6788999999999998 788999999999998877766553 23332 2799999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
| |....++.|.|..
T Consensus 82 a----g~~~~~~~l~V~~ 95 (100)
T 2yuv_A 82 A----GDEKCSTELFVRS 95 (100)
T ss_dssp E----TTEEEEEEEEECC
T ss_pred E----CCceEEEEEEEec
Confidence 9 5567778888876
No 486
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.23 E-value=7.2e-11 Score=89.44 Aligned_cols=81 Identities=21% Similarity=0.394 Sum_probs=65.0
Q ss_pred CCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670 317 KPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395 (540)
Q Consensus 317 ~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 395 (540)
.+....+.+|+.+.|.|.+. +.|.+.+.|++++......... ..++ +|.|.+++.+|+|.|+|.|.|..|
T Consensus 16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~----~~~~-----~L~i~~v~~~D~G~Y~C~a~n~~g 86 (98)
T 1gl4_B 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----DFNG-----ILTIRNVQPSDAGTYVCTGSNMFA 86 (98)
T ss_dssp SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE----EETT-----EEEECSCCGGGCEEEEEEEECSSC
T ss_pred CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceee----cCCC-----EEEEeCCChhhCEEEEEEecCCCC
Confidence 34667889999999999998 6899999999975444332211 1122 799999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy670 396 ELNANLTLNIE 406 (540)
Q Consensus 396 ~~~~~~~l~V~ 406 (540)
....++.|.|.
T Consensus 87 ~~~~~~~l~V~ 97 (98)
T 1gl4_B 87 MDQGTATLHVQ 97 (98)
T ss_dssp EEEEEEEEEEC
T ss_pred ccccEEEEEEe
Confidence 98888888875
No 487
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.4e-12 Score=94.96 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCce--EEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI--SWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 388 (540)
+|.+...+....+.+|+.+.|.|.+.+.| +.+.|+++|..+...... ++....++. ...|.|.++..+|+|.|+|
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C 84 (101)
T 2edk_A 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGK--RHILIFSDVVQEDRGRYQV 84 (101)
T ss_dssp CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSS--EEEEECSSCCGGGCSBEEE
T ss_pred CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCC--EEEEEECCCChhhCEEEEE
Confidence 67777778888999999999999999988 999999999998776632 222233333 3379999999999999999
Q ss_pred EEEcCCeeeEEEEEEEEEE
Q psy670 389 NIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 389 ~a~n~~g~~~~~~~l~V~~ 407 (540)
.|.| ...++.|.|..
T Consensus 85 ~a~n----~~~~~~l~V~~ 99 (101)
T 2edk_A 85 ITNG----GQCEAELIVEE 99 (101)
T ss_dssp ECSS----CEECCBEEEEC
T ss_pred EEcC----CcEEEEEEEeC
Confidence 9987 33455566654
No 488
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=94.14 Aligned_cols=88 Identities=17% Similarity=0.478 Sum_probs=69.8
Q ss_pred CCeEEeCCce---EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670 311 PPTFIEKPKI---RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387 (540)
Q Consensus 311 ~p~~~~~~~~---~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 387 (540)
+|.++..+.. ..+.+|+.+.|.|.+.+.|.+ +.|++++..+....++.+.. ++. ...|.|.+++.+|+|.|+
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~--~~~--~~~L~I~~~~~~D~G~Y~ 81 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKM--DGR--KHRLILPEAKVQDSGEFE 81 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEE--ETT--EEEEEESSCCTTTCEEEE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEe--CCC--EEEEEECCCChhhCEEEE
Confidence 5555555655 678999999999999999988 99999999998777665542 222 238999999999999999
Q ss_pred EEEEcCCeeeEEEEEEEEEE
Q psy670 388 CNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 388 C~a~n~~g~~~~~~~l~V~~ 407 (540)
|.|.|..+ .+.|.|..
T Consensus 82 C~a~n~~~----~~~l~V~~ 97 (104)
T 2e6p_A 82 CRTEGVSA----FFGVTVQD 97 (104)
T ss_dssp EECSSCCC----CEEEEEEC
T ss_pred EEECCceE----EEEEEEcC
Confidence 99999743 56677765
No 489
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=94.76 Aligned_cols=99 Identities=22% Similarity=0.424 Sum_probs=76.0
Q ss_pred eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEE
Q psy670 293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372 (540)
Q Consensus 293 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
....+.|.|... +|.+...+....+.+|+.+.|.|.+.+. |.+.|++++..+....++.+. .++. ...
T Consensus 7 ~~~~~~l~V~~~------pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~--~~~~--~~~ 74 (113)
T 2edh_A 7 GRTSAMLTVRAL------PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLR--QDGA--RCE 74 (113)
T ss_dssp CCCCCCCCCCCS------CCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEE--EETT--EEE
T ss_pred CcEEEEEEEEcC------CCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEE--ECCC--EEE
Confidence 344444555432 5677777778889999999999999764 689999999998877766544 2332 337
Q ss_pred EEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407 (540)
Q Consensus 373 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 407 (540)
|.|.+++.+|+|.|+|.| +....++.|.|..
T Consensus 75 L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~ 105 (113)
T 2edh_A 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA 105 (113)
T ss_dssp EEECSCCSTTCEEEEEEE----TTEEEEEEEEECC
T ss_pred EEECCCChhhCEEEEEEe----CCCCEEEEEEEeC
Confidence 999999999999999999 5667778888876
No 490
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.23 E-value=7.7e-11 Score=92.77 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=67.2
Q ss_pred CCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301 (540)
Q Consensus 222 g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 301 (540)
.+...|.|.+.|.|.+.+.|+++|..+....................|.|.+++..|+|.|+|.|.|..|....++.+.|
T Consensus 20 ~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v 99 (118)
T 1wwc_A 20 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99 (118)
T ss_dssp CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence 36678999999999999999999999987765555444333344568999999999999999999999998888777766
Q ss_pred ee
Q psy670 302 EA 303 (540)
Q Consensus 302 ~~ 303 (540)
..
T Consensus 100 ~~ 101 (118)
T 1wwc_A 100 LK 101 (118)
T ss_dssp SC
T ss_pred cc
Confidence 55
No 491
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.4e-11 Score=91.42 Aligned_cols=79 Identities=20% Similarity=0.473 Sum_probs=66.6
Q ss_pred CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN 190 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 190 (540)
...+.+|+.++|.|.+.+.| +.+.|+|++..+....+..+.. ..|.|.+++.+|+|.|+|.+.|..|...
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~---------~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 81 (99)
T 2cr3_A 12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG---------EEVEVQDSVPADSGLYACVTSSPSGSDT 81 (99)
T ss_dssp ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECS---------SEEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEEC---------CEEEEccCCHHHCEEEEEEEEeCCceEE
Confidence 34678999999999998877 7999999998887666554431 1899999999999999999999999888
Q ss_pred EEEEEEEec
Q psy670 191 ANIALNFQG 199 (540)
Q Consensus 191 ~~~~l~v~~ 199 (540)
..+.|.|..
T Consensus 82 ~~~~l~V~~ 90 (99)
T 2cr3_A 82 TYFSVNVSD 90 (99)
T ss_dssp EEEEECBCS
T ss_pred EEEEEEEec
Confidence 888888875
No 492
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.23 E-value=3.6e-11 Score=90.45 Aligned_cols=87 Identities=18% Similarity=0.377 Sum_probs=69.2
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
.+.+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+....++.+. .++. ...|.|.+++.+|+|.|+|.|
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLA--TEGT--RHTLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEE--EETT--EEEEEESSCCTTCCSEEEEEE
T ss_pred CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEE--EcCC--EEEEEEcCCCcccCEEEEEEE
Confidence 3556666778889999999999999 8888999999999998877766553 2332 238999999999999999999
Q ss_pred EcCCeeeEEEEEEEEE
Q psy670 391 KNFHGELNANLTLNIE 406 (540)
Q Consensus 391 ~n~~g~~~~~~~l~V~ 406 (540)
|....++.|.|.
T Consensus 83 ----g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 ----GSSKVKFDLKVI 94 (95)
T ss_dssp ----TTEEEEEEEEEE
T ss_pred ----CCceEEEEEEEe
Confidence 445666777764
No 493
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.7e-11 Score=92.23 Aligned_cols=97 Identities=26% Similarity=0.455 Sum_probs=74.0
Q ss_pred CCeeccCCceeecCCCCeEEEEEEeccc---CCCeEEEEeCCEE-eec--cCceEEEE--ecCCCeEEEEEEEeCCCCCC
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAK---PRPEVKWFKADKL-VKE--SSKIKIIV--NEQDDTYEIICEITDPIGPD 278 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~-l~~--~~~~~~~~--~~~~~~~~~~l~i~~~~~~d 278 (540)
.+.|...|..+.+.+|+.++|.|.+.+. |.|.|.|+|+... +.. ...+.+.. ..........|.|.++...|
T Consensus 12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 91 (118)
T 2edn_A 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD 91 (118)
T ss_dssp SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence 5567777888899999999999999874 7899999997421 111 22333321 22233345689999999999
Q ss_pred cEEEEEEEEcCCCCeeeeEEEEEee
Q psy670 279 SGTYRCNVKNEFGESNANLNLNIEA 303 (540)
Q Consensus 279 ~g~y~C~~~~~~~~~~~~~~l~v~~ 303 (540)
+|.|+|.+.|..|..+..+.|.|..
T Consensus 92 ~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 92 RGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 9999999999999988888888875
No 494
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.22 E-value=4.4e-11 Score=94.87 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=64.4
Q ss_pred CccccCCCeEEEEEEEeec--CCCceEEEeCCEeecC-----CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670 111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGTKVIED-----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC 183 (540)
Q Consensus 111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 183 (540)
...+.+|+++.|.|.+.|. |.+.+.|++++..+.. ........ .........|.|.+++.+|+|.|+|.+.
T Consensus 17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 94 (122)
T 3s35_X 17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG--SEMKKFLSTLTIDGVTRSDQGLYTCAAS 94 (122)
T ss_dssp CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEE--TTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccC--CceeeEEEEEEECCCCcccCEEEEEEEc
Confidence 3467899999999999884 4568999998874421 11111111 0111234589999999999999999999
Q ss_pred cCCceeEEEEEEEEec
Q psy670 184 NSIGESNANIALNFQG 199 (540)
Q Consensus 184 ~~~~~~~~~~~l~v~~ 199 (540)
|..|.....+.|.|.+
T Consensus 95 n~~g~~~~~~~l~V~~ 110 (122)
T 3s35_X 95 SGLMTKKNSTFVRVHE 110 (122)
T ss_dssp CSSCEEEEEEEEEEEE
T ss_pred cCCCceEEEEEEEEec
Confidence 9999988999999986
No 495
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.21 E-value=7.4e-11 Score=87.95 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=67.1
Q ss_pred CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286 (540)
Q Consensus 207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 286 (540)
++.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~a 69 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-------------KLYMVPYVDLEHQGTYWCHV 69 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS-------------SEEEESSCCGGGCEEEEEEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC-------------CeEEECCCCHHhCEEEEEEE
Confidence 44556667677788999999999999999999999999988765432 17999999999999999999
Q ss_pred EcCCCCee-eeEEEEEe
Q psy670 287 KNEFGESN-ANLNLNIE 302 (540)
Q Consensus 287 ~~~~~~~~-~~~~l~v~ 302 (540)
.|..|... ..+.+.|.
T Consensus 70 ~n~~g~~~s~~~~l~V~ 86 (91)
T 3bfo_A 70 YNDRDSQDSKKVEIIID 86 (91)
T ss_dssp ECSSCEEECCCEEEEEC
T ss_pred EcCCCCEEeeeEEEEEe
Confidence 99988643 44555553
No 496
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=93.39 Aligned_cols=82 Identities=22% Similarity=0.432 Sum_probs=65.9
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 390 (540)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... . .|.|.+++.+|+|.|+|.|
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~---------~----~L~i~~v~~~d~G~Y~C~a 76 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------P----VLILPEIGPQDQGTYSCVA 76 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCC---------S----EEEEESCCTTTCEEEECEE
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCC---------C----EEEECCCCcccCEEEEEEE
Confidence 56666677677789999999999999999999999999988765422 1 7999999999999999999
Q ss_pred EcCCeeeE--EEEEEEE
Q psy670 391 KNFHGELN--ANLTLNI 405 (540)
Q Consensus 391 ~n~~g~~~--~~~~l~V 405 (540)
.|..+... ..+.|.|
T Consensus 77 ~n~~~~~~~s~~~~v~V 93 (96)
T 2ens_A 77 THSSHGPQESRAVSISI 93 (96)
T ss_dssp CCSSCCCEECCCEEEEE
T ss_pred EeCCCCcEEEEEEEEEE
Confidence 99765543 3444444
No 497
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=7e-11 Score=92.24 Aligned_cols=78 Identities=23% Similarity=0.446 Sum_probs=63.3
Q ss_pred EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400 (540)
Q Consensus 321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 400 (540)
..+.+|+.+.|.|.+. .|.+.+.|+++|..+....++.+. .++. ...|.|.+++.+|+|.|+|.|.| ...+
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~a~n----~~~~ 93 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQ--KEDT--VRRLVLPAVQLEDSGEYLCEIDD----ESAS 93 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEE--ECSS--EEEEEESSCCTTTCEEEEEESSS----CEEE
T ss_pred EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEE--ECCC--EEEEEECCCCcccCEEEEEEEec----CcEE
Confidence 5677999999999995 788899999999999877766543 2222 23899999999999999999988 4557
Q ss_pred EEEEEEE
Q psy670 401 LTLNIEM 407 (540)
Q Consensus 401 ~~l~V~~ 407 (540)
+.|.|..
T Consensus 94 ~~l~V~~ 100 (113)
T 2cpc_A 94 FTVTVTE 100 (113)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7777776
No 498
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2e-11 Score=93.47 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEccCC-CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 389 (540)
++.+...+....+.+|+.++|.|.+.+.|. +.+.|+++|..+....++.+. .++. ..+|.|.+++.+|+|.|+|.
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~ 83 (104)
T 2eny_A 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT--RQGR--KYILVVREAAPSDAGEVVFS 83 (104)
T ss_dssp CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEE--EETT--EEEEEECSCCTTTCSCEEEE
T ss_pred CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEE--EcCC--EEEEEECCCCHHHCEEEEEE
Confidence 556666778889999999999999988775 489999999999877766543 2333 23899999999999999999
Q ss_pred EEcCCeeeEEEEEEEEEE
Q psy670 390 IKNFHGELNANLTLNIEM 407 (540)
Q Consensus 390 a~n~~g~~~~~~~l~V~~ 407 (540)
|.| ...++.|.|..
T Consensus 84 a~~----~~~~a~L~V~~ 97 (104)
T 2eny_A 84 VRG----LTSKASLIVRE 97 (104)
T ss_dssp ETT----EEEEECEEEEC
T ss_pred ECC----eeEEEEEEEeC
Confidence 854 45677888876
No 499
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.19 E-value=4.9e-11 Score=91.19 Aligned_cols=90 Identities=18% Similarity=0.346 Sum_probs=67.9
Q ss_pred CCCCCeEEeCCce-EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670 308 EGDPPTFIEKPKI-RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385 (540)
Q Consensus 308 ~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 385 (540)
...+|.|+..+.. ..+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+ .++.+. .++. ...|.|.+++.+|+|.
T Consensus 12 ~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~ 86 (104)
T 1pd6_A 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFE--SIGA--KRTLTISQCSLADDAA 86 (104)
T ss_dssp CSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEE--EETT--EEEEEECSCSSSSCEE
T ss_pred ccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEE--ecCC--EEEEEECCCCcccCEE
Confidence 3446666655544 779999999999999 7888999999999998776 555443 2333 3489999999999999
Q ss_pred EEEEEEcCCeeeEEEEEEEEE
Q psy670 386 YKCNIKNFHGELNANLTLNIE 406 (540)
Q Consensus 386 Y~C~a~n~~g~~~~~~~l~V~ 406 (540)
|+|.|.+ ...+..|.|.
T Consensus 87 Y~C~a~~----~~~~~~l~V~ 103 (104)
T 1pd6_A 87 YQCVVGG----EKCSTELFVK 103 (104)
T ss_dssp EEEEETT----EEECCEEEEE
T ss_pred EEEEECC----CcEEEEEEEe
Confidence 9999943 4445556554
No 500
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.19 E-value=2.7e-10 Score=88.63 Aligned_cols=95 Identities=20% Similarity=0.399 Sum_probs=71.3
Q ss_pred CCeEEeCCceEEeeCCCeEEEEEEEEcc--CCCeEEEEECCEEccCCCceEEE-EEec---CCeeEEEEEEcCCCCCCCe
Q psy670 311 PPTFIEKPKIRSEQGGKLVVMECKVKAK--PMPEIVWFHEGKELQQTDRISWN-VTLK---GDKYHIRLEVKDPRKEDTG 384 (540)
Q Consensus 311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~~~~~~~~~~~~-~~~~---~~~~~~~L~i~~~~~~d~G 384 (540)
+|.+...+....+.+|+.++|.|.+.+. +.+.+.|++++..+......... .... ......+|.|.+++.+|+|
T Consensus 10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 89 (112)
T 3so5_A 10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG 89 (112)
T ss_dssp SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCE
T ss_pred CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCC
Confidence 7788888888889999999999999965 45799999999988654321111 0001 0012348999999999999
Q ss_pred eEEEEEEcCCee-eEEEEEEEE
Q psy670 385 LYKCNIKNFHGE-LNANLTLNI 405 (540)
Q Consensus 385 ~Y~C~a~n~~g~-~~~~~~l~V 405 (540)
.|+|.|.|..|. .+..+.|.|
T Consensus 90 ~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 90 XYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEETTEEEECCCEEEEE
T ss_pred eEEEEEEeCCCcEEEeEEEEEe
Confidence 999999999998 456777765
Done!