RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy670
(540 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 264 bits (677), Expect = 1e-81
Identities = 92/479 (19%), Positives = 172/479 (35%), Gaps = 87/479 (18%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
Y + + L+ + + + L I V SD GEY A+N G +S+ L
Sbjct: 40 YKEHTKLRSAPAYKMQFKNNVASL------VINKVDHSDVGEYTCKAENSVGAVASSAVL 93
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
E P F +K G + EC + S + WY+ ++++D
Sbjct: 94 VIKER--------KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDD 145
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGF 206
++ S L+I + G Y C+A N +G ++++ L E
Sbjct: 146 ANLQTSFIHNV-----ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE----V 196
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P F KP + G KC + ++ W K ++ ++ K+ + E T
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL- 255
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE-QG 325
+ D+G Y C N G+ + + L ++ PP FI+K + +
Sbjct: 256 ---TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVKQ 305
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ ECK+ P +++W+ + E+Q++ + + + LE+ + ED+G
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKF----RMSFVESVAVLEMYNLSVEDSGD 361
Query: 386 YKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445
Y C N G +++ +L ++
Sbjct: 362 YTCEAHNAAGSASSSTSLKVK--------------------------------------- 382
Query: 446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
PV R+ P V K V +EC++ V+W K+K ++ K+ +
Sbjct: 383 -------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 434
Score = 261 bits (668), Expect = 2e-80
Identities = 91/477 (19%), Positives = 167/477 (35%), Gaps = 90/477 (18%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
Y G LLK L ++ + + + L I +S G+Y A N G SS+ L
Sbjct: 136 YKDGELLKDDANLQTSFIHNVATLQ------ILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
SE P F KP G+ +C + + I W + + I
Sbjct: 190 TLSEH--------EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG 241
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGF 206
G KM+ L + TK D G Y C A N G+ + + L Q
Sbjct: 242 GNYKMTLVENTA-----TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------- 289
Query: 207 APSFIEKPRIIPN-ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
P FI+K + + +CK P +V W+K + ++ESSK ++ +
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF--VESVA 347
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
+ + + DSG Y C N G ++++ +L ++ PP F +KP
Sbjct: 348 VLE--MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLK 398
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G V +EC+++ P ++ W + +EL+ + + + + + + + D G
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKY----KIMSENFLTSIHILNVDSADIGE 454
Query: 386 YKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445
Y+C N G ++ ++
Sbjct: 455 YQCKASNDVGSDTCVGSITLK--------------------------------------- 475
Query: 446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
P + ++ + V ++ + SV W K+K + ++ ++
Sbjct: 476 -------APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNI 525
Score = 246 bits (629), Expect = 1e-74
Identities = 83/381 (21%), Positives = 153/381 (40%), Gaps = 48/381 (12%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
++ TLV++ + LT+ V K D+G+Y A N G+ S + L
Sbjct: 232 AKDNREIRPGGNYKMTLVENTA------TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIED 145
E PRF KK + + EC + SP ++WY+ I++
Sbjct: 286 GVQE-----------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334
Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
+ + +MS + LE+ N + +D G+Y C A N+ G ++++ +L +
Sbjct: 335 SSKFRMSF-----VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------ 383
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
P F +KP + G + ++C+ P +V W K + ++ K KI+ +
Sbjct: 384 -PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442
Query: 266 EIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
I + D G Y+C N+ G ++ ++A PP F++K S
Sbjct: 443 HI-----LNVDSADIGEYQCKASNDVGSDTCVGSITLKA-------PPRFVKKLSDISTV 490
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G+ V ++ ++ + WF + E+ + N+ + + L+ + G
Sbjct: 491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESD---NIWISYSENIATLQFSRAEPANAG 547
Query: 385 LYKCNIKNFHGELNANLTLNI 405
Y C IKN G TL++
Sbjct: 548 KYTCQIKNEAGTQECFATLSV 568
Score = 213 bits (543), Expect = 3e-62
Identities = 75/408 (18%), Positives = 139/408 (34%), Gaps = 70/408 (17%)
Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
+ P F + G+ + ++C ++ +P I WY+ + KM K+
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV--- 60
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
L IN D G Y C A NS+G ++ L + PSF K + +
Sbjct: 61 --ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKE----RKLPPSFARKLKDVHET 114
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G + +C+ + +V W+K +L+K+ + ++ T +I G
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI----LQTDQSHVG 170
Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
Y C+ N G ++++ L + PP F KP G+ +C V
Sbjct: 171 QYNCSASNPLGTASSSAKLTLS----EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAP 226
Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
+I W + +E++ +TL + L V K D G Y C N G+ + +
Sbjct: 227 IKITWAKDNREIRPGGNY--KMTLVENTAT--LTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Query: 401 LTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV 460
L ++ P +
Sbjct: 283 AQLGVQ----------------------------------------------EPPRFIKK 296
Query: 461 PK-VVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
+ + + + ECK+ E V W K++ ++E +K + +
Sbjct: 297 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE 344
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 240 bits (614), Expect = 2e-70
Identities = 81/458 (17%), Positives = 153/458 (33%), Gaps = 83/458 (18%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF--PKKPTIH 114
VL I++V+K D G Y+ +N ++ L P +
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR--------FDPPVIRQAFQEETM 441
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ G + ++CV +P P+I W K I + R ++ + + L I + +D
Sbjct: 442 EPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND 501
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
GG Y+C A + +G + + LN G +I + +G + + C +
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLNVYG--------LPYIRQMEKKAIVAGETLIVTCPVAGY 553
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES- 293
P + W + ++ + + K K+ + T I + D TY C KN+ G S
Sbjct: 554 PIDSIVWERDNRALPINRKQKVF---PNGTLIIE-NVERN--SDQATYTCVAKNQEGYSA 607
Query: 294 NANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKE 351
+L + + P I + Q G+ + + C V +P I W +G+
Sbjct: 608 RGSLEVQVMV-------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQA 660
Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
+ + I+ + + L ++ G + C+ +N G LN+
Sbjct: 661 ISEDLGITTSRVGRRGSV---LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY----- 712
Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
V P P ++
Sbjct: 713 -----------------------------------------VPPRWILEPTDKAFAQGSD 731
Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
+ECK +P VTW K + K + + ++
Sbjct: 732 AKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769
Score = 232 bits (593), Expect = 1e-67
Identities = 87/452 (19%), Positives = 149/452 (32%), Gaps = 83/452 (18%)
Query: 58 LTIKNVQKSDS-GEYKVIAKNKNGEG---SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI 113
L I+ V D Y+ K++ S+T E VP + T
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260
Query: 114 HQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
+ + C + P+P WY+ + + ++ + L I + +
Sbjct: 261 -SGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG---TLIIKDAVVE 316
Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
D G Y C NS+G + L S P + G C+ +
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTA-------PLSAKIDPPTQTVDFGRPAVFTCQYTG 369
Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
P V W K K + S + I + + + D G Y+C V+N+ +
Sbjct: 370 NPIKTVSWMKDGKAIGHSESVLRIESVKKE--------------DKGMYQCFVRNDRESA 415
Query: 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ 353
A+ L + +P P + + + + G V ++C P PEI W +GK++
Sbjct: 416 EASAELKLGGRFDP----PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA 471
Query: 354 QTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
DR + VT+ GD L + D GLYKC K+ G + LN+
Sbjct: 472 NNDRYQVGQYVTVNGDVVSY-LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY----- 525
Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
+P IR++ K I +T
Sbjct: 526 -----------------------------------------GLPYIRQMEK-KAIVAGET 543
Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
+++ C V S+ W ++ + + K V
Sbjct: 544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKV 575
Score = 199 bits (507), Expect = 1e-55
Identities = 77/498 (15%), Positives = 155/498 (31%), Gaps = 100/498 (20%)
Query: 40 RLSSTLVQDQSRLYYL---AVLTIKNVQKSD------SGEYKVIAKNKNGE-GSSTVNLN 89
R T V D L + L + D + Y +A+N+ G S V++
Sbjct: 75 RSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 134
Query: 90 FSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLE---ASPMPDIIWYQGTKVIE 144
A + G+ V++C++ A + + W+ +
Sbjct: 135 AVV-----------AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183
Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIG--ESNANIALNFQGGE 201
G K + L I D +Y+C + + + E
Sbjct: 184 FPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240
Query: 202 NGAGFAPSFIE--KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
+ P + K + + + + C P P +W+K + + +
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDR 300
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
+ + +I I D + DSG Y C V N G + L + A P + P
Sbjct: 301 VKQVSGTLI--IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-------PLSAKIDPP 351
Query: 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
++ G+ V C+ P+ + W +GK + ++ + L ++ +
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVK 397
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
KED G+Y+C ++N A+ L
Sbjct: 398 KEDKGMYQCFVRNDRESAEASAELK----------------------------------- 422
Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
+ PVIR+ + T+ +V ++C P ++W + + ++
Sbjct: 423 --------LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474
Query: 500 KHVVHIEQVKDVSMNFEL 517
++ V + + L
Sbjct: 475 RYQVGQYVTVNGDVVSYL 492
Score = 195 bits (496), Expect = 4e-54
Identities = 73/377 (19%), Positives = 126/377 (33%), Gaps = 51/377 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G + +DR + ++ L I +V +D G YK IAK+K G + L
Sbjct: 464 ELDGKKIANNDRYQVGQYVTVNGDV-VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Query: 89 NFSEEDGKLKVPGGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
N P +K I G+ L++ C + P+ I+W + + +
Sbjct: 523 NVYG-----------LPYIRQMEKKAIVA-GETLIVTCPVAGYPIDSIVWERDNRALPIN 570
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKD-DGGNYRCNACNSIGES-NANIALNFQGGENGA 204
+ K+ L I N ++ D Y C A N G S ++ +
Sbjct: 571 RKQKVFPNG--------TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV----- 617
Query: 205 GFAPSFIEK-PRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQD 262
P I P + G + + C P + W + + E I +
Sbjct: 618 --LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
+ I + +G + C+ +N G LN+ PP +I +P ++
Sbjct: 676 GSVLTIEAVEAS---HAGNFTCHARNLAGHQQFTTPLNVY-------VPPRWILEPTDKA 725
Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI---RLEVKDPR 379
G +ECK P P++ W + + D + L V + +
Sbjct: 726 FAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKK----SDNIRVEEGTLHVDNIQ 781
Query: 380 KEDTGLYKCNIKNFHGE 396
K + G Y C N G
Sbjct: 782 KTNEGYYLCEAINGIGS 798
Score = 192 bits (490), Expect = 3e-53
Identities = 74/470 (15%), Positives = 130/470 (27%), Gaps = 91/470 (19%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP---TIH 114
+ + N + + +A G + N K P F K+P
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP---------PDADQKGPVFLKEPTNRIDF 51
Query: 115 QDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
+ +EC +PMP+IIW + D ++ G +L +
Sbjct: 52 SNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD-G------KLVFPPFRAE 104
Query: 174 DG------GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQM 227
D Y C A N G + A A + G +
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVR------AVVAQYYEADVNKEHVIRGNSAVI 158
Query: 228 KC---KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS-GTYR 283
KC A V W ++ + E+ I + D +Y+
Sbjct: 159 KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH--IREVGPEDGYKSYQ 216
Query: 284 CNVKNEFGESN---ANLNLNIEAEAEPEGDPP-TFIEKPKIRSEQGGKLVVMECKVKAKP 339
C K+ A + E P + K +++ G + + C + P
Sbjct: 217 CRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYP 276
Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
+P W+ + + + N + + L +KD ED+G Y C + N G +
Sbjct: 277 VPVFRWYKFIEGTTRKQAVVLND--RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 334
Query: 400 NLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE 459
L + +
Sbjct: 335 ETVLTVT----------------------------------------------APLSAKI 348
Query: 460 VPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
P T+ + V C+ +V+WMK+ + V+ IE VK
Sbjct: 349 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-SVLRIESVK 397
Score = 126 bits (319), Expect = 5e-31
Identities = 55/287 (19%), Positives = 98/287 (34%), Gaps = 39/287 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-SDSGEYKVIAKNKNGEGSSTVN 87
L ++ + + + + L I+NV++ SD Y +AKN+ G +
Sbjct: 561 ERDNRALPINRKQ--KVFPNGT-------LIIENVERNSDQATYTCVAKNQEGYSARG-- 609
Query: 88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQD---GDLLVMECVLEASPMP-DIIWYQGTKVI 143
+++V PR G L + C + +P +I W + I
Sbjct: 610 ------SLEVQVMV--LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661
Query: 144 EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENG 203
+ I S+ L I GN+ C+A N G LN
Sbjct: 662 SEDLGITTSRVGRRGSV----LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV---- 713
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
P +I +P G+ +++CK P+P+V W KA K + ++
Sbjct: 714 ---PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK-DLKKSDNIR 769
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGE--SNANLNLNIEAEAEPE 308
E + + + G Y C N G S + ++++A
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM-ISVQAHHHHH 815
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 211 bits (539), Expect = 1e-64
Identities = 67/306 (21%), Positives = 120/306 (39%), Gaps = 30/306 (9%)
Query: 104 APRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
P F KP G+ +C + + I W + + I G KM+
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL-----VEN 59
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN-E 220
L + TK D G Y C A N G+ + + L Q P FI+K +
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVK 112
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
+ +CK P +V W+K + ++ESSK ++ E E+ + DSG
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM----YNLSVEDSG 168
Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
Y C N G ++++ +L ++ PP F +KP G V +EC+++ P
Sbjct: 169 DYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECELQGTPP 221
Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
++ W + +EL+ + + + + + + + D G Y+C N G
Sbjct: 222 FQVSWHKDKRELRSGKKY----KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277
Query: 401 LTLNIE 406
++ ++
Sbjct: 278 GSITLK 283
Score = 186 bits (475), Expect = 2e-55
Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 36/278 (12%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
++ TLV++ + LT+ V K D+G+Y A N G+ S + L
Sbjct: 40 AKDNREIRPGGNYKMTLVENTA------TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQ---DGDLLVMECVLEASPMPDIIWYQGTKVIED 145
E PRF KK + + EC + SP ++WY+ I++
Sbjct: 94 GVQE-----------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
+ + +MS LE+ N + +D G+Y C A N+ G ++++ +L +
Sbjct: 143 SSKFRMSFVE---SVA--VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------ 191
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
P F +KP + G + ++C+ P +V W K + ++ K KI+ +
Sbjct: 192 -PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 250
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
I + D G Y+C N+ G ++ ++A
Sbjct: 251 ----HILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 162 bits (411), Expect = 4e-46
Identities = 57/302 (18%), Positives = 112/302 (37%), Gaps = 62/302 (20%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
GA P F KP + G KC + ++ W K ++ ++ K+ + +
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV--E 58
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK-IR 321
+T + + D+G Y C N G+ + + L ++ PP FI+K + R
Sbjct: 59 NTATL--TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSR 109
Query: 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
+ + ECK+ P +++W+ + E+Q++ + ++ LE+ + E
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFR--MSFVESVA--VLEMYNLSVE 165
Query: 382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNP 441
D+G Y C N G +++ +L ++
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVK----------------------------------- 190
Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
PV R+ P V K V +EC++ V+W K+K ++ K+
Sbjct: 191 -----------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY 239
Query: 502 VV 503
+
Sbjct: 240 KI 241
Score = 98.3 bits (245), Expect = 4e-23
Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 49/196 (25%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP F KP G+ +C V +I W + +E++ + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY----KMTLVENT 60
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
L V K D G Y C N G+ + + L ++
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------------ 96
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
P+F I+++ + + + ECK+ E V W K
Sbjct: 97 --------EPPRF-------------IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK 135
Query: 491 EKNTVKEDNKHVVHIE 506
++ ++E +K +
Sbjct: 136 DETEIQESSKFRMSFV 151
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 213 bits (542), Expect = 9e-61
Identities = 76/546 (13%), Positives = 152/546 (27%), Gaps = 130/546 (23%)
Query: 11 TLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYL--AVLTIKNVQKSDS 68
T E I+ N + S + ++ L + LTI V +SD
Sbjct: 247 TARTELNVGID----FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302
Query: 69 GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVL 126
G Y A + ++ + E+ ++ + G+ + +
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEK--------PFVAFGSGMESLVEATVGERVRIPAKY 354
Query: 127 EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186
P P+I WY+ +E IK L I ++ D GNY N I
Sbjct: 355 LGYPPPEIKWYKNGIPLESNHTIKAGHV----------LTIMEVSERDTGNYTVILTNPI 404
Query: 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNES---GTLIQMKCKCSAKPRPE-VKWF 242
+ + ++ P EK I P +S GT + C A P P + W+
Sbjct: 405 SKEKQSHVVSLVVYV-----PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 459
Query: 243 KADKLVKESSKIKIIVNEQ-----------------------------DDTYEIICEITD 273
+ + + + + + + +
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519
Query: 274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMEC 333
S Y+C N+ G ++ ++ P +P ++ + + V + C
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVT-------RGPEITLQPDMQPTEQ-ESVSLWC 571
Query: 334 KVKAKPMPEIVWFHEGKELQQTDRISW----------------NVTLKGDKYHIRLEVKD 377
+ W+ G + + + +E+K+
Sbjct: 572 TADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKN 631
Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDF 437
+D G Y C ++ + + +
Sbjct: 632 ASLQDQGDYVCLAQDRKTKKRHCVVRQLT------------------------------- 660
Query: 438 SVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKE 497
V + P I + T S +++ + C P + W K+ T+ E
Sbjct: 661 -VLERVA----------PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE 709
Query: 498 DNKHVV 503
D+ V+
Sbjct: 710 DSGIVL 715
Score = 193 bits (490), Expect = 1e-53
Identities = 60/482 (12%), Positives = 121/482 (25%), Gaps = 81/482 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ R+ T D + LTI V +D+G YK + + V +
Sbjct: 62 LWPNNQSGSEQRVEVTECSDGL---FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDII--WYQGTKVIEDT 146
+ + T ++ +V+ C+ S + + Y + + D
Sbjct: 119 Q---DYRSPFIASVSDQHGVVYITENK-NKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGF 206
RI K I + G C A + + + + G
Sbjct: 175 NRISWDSKK--------GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR---I 223
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDT 264
+ I G + + C + + W + + + Q +
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283
Query: 265 YEIIC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
I D G Y C + + + + + +
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMESL 339
Query: 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK 380
G+ V + K P PEI W+ G L+ I L + + +
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV---------LTIMEVSE 390
Query: 381 EDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVN 440
DTG Y + N + + +++
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLV---------------------------------- 416
Query: 441 PQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDN 499
V + + V + T + C V ++ P + W + +
Sbjct: 417 -------VYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANE 469
Query: 500 KH 501
Sbjct: 470 PS 471
Score = 191 bits (485), Expect = 6e-53
Identities = 74/511 (14%), Positives = 142/511 (27%), Gaps = 104/511 (20%)
Query: 44 TLVQDQSRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
V D +R+ + TI + S +G AK + S + + V
Sbjct: 169 RFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVL 228
Query: 102 GKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIW---YQGTKVIEDTGRIKMSKKSIGK 158
P G+ LV+ C I + Y +K + K G
Sbjct: 229 S-----PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283
Query: 159 DTYLL--RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
+ L I+ T+ D G Y C A + + + + F +
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE----KPFVAFGSGMESL 339
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ G +++ K P PE+KW+K ++ + IK + + I +
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-------AGHVLT--IMEVSE 390
Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
D+G Y + N + + +++ P+ + I G + C V
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY--GTTQTLTCTVY 448
Query: 337 AKPMPE-IVWFHEGKELQQTDRISWN-----------------------------VTLKG 366
A P P I W+ + +E + L
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
K + + LYKC N G ++ ++
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT-------------------- 548
Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSV 486
P I P + +++++V + C ++
Sbjct: 549 --------------------------RGPEITLQPDM-QPTEQESVSLWCTADRSTFENL 581
Query: 487 TWMKEKNTVKEDNKHVVHIEQVKDVSMNFEL 517
TW K + + K++ ++L
Sbjct: 582 TWYKLGPQPLPIHVGELPTPVCKNLDTLWKL 612
Score = 190 bits (483), Expect = 1e-52
Identities = 72/411 (17%), Positives = 132/411 (32%), Gaps = 72/411 (17%)
Query: 44 TLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKV---P 100
++ + VLTI V + D+G Y VI N + + ++ L V P
Sbjct: 369 IPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS-------LVVYVPP 421
Query: 101 GGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVI---------------- 143
+Q G + C + A P P I WY +
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP 481
Query: 144 ----------EDTGRIKMSKK--SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA 191
+ +I+++K ++ + + + Y+C A N +G
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541
Query: 192 NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD------ 245
I+ + G P +P + P E + + C + W+K
Sbjct: 542 VISFHVTRG-------PEITLQPDMQPTE-QESVSLWCTADRSTFENLTWYKLGPQPLPI 593
Query: 246 ----------KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
K + K+ + +I E+ + D G Y C ++ +
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653
Query: 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT 355
+ + PT + ++ G+ + + C P P+I+WF + + L +
Sbjct: 654 CVVRQLTVLERV---APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED 710
Query: 356 DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
I V G++ L ++ RKED GLY C + G IE
Sbjct: 711 SGI---VLKDGNR---NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 167 bits (423), Expect = 1e-44
Identities = 54/464 (11%), Positives = 120/464 (25%), Gaps = 89/464 (19%)
Query: 60 IKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDG 117
+++ + + G +V+L PR + I +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL--------------DLPRLSIQKDILTIKAN 46
Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
L + C D +W E + + L I +D G
Sbjct: 47 TTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTEC----SDGLFCKTLTIPKVIGNDTGA 100
Query: 178 YRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP 237
Y+C + S + + + + S I + + C S
Sbjct: 101 YKCFYRETDLASVIYVYVQDY--RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158
Query: 238 EV--KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
+ + V + ++I D I + +G C K +
Sbjct: 159 VSLCARYPEKRFVPDGNRISW-----DSKKGFT--IPSYMISYAGMVFCEAKINDESYQS 211
Query: 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV--WFHEGKELQ 353
+ + + + G+ +V+ C + + I W + + Q
Sbjct: 212 IMYIVVVVGYRI---YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQ 268
Query: 354 QTDRISWNVTLK----GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
++ ++ + K+ L + + D GLY C + + + +
Sbjct: 269 HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 328
Query: 410 FIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469
F+ + +V +
Sbjct: 329 FV-------------------------------------------AFGSGMESLVEATVG 345
Query: 470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDNK----HVVHIEQVK 509
+ V I K + P + W K ++ ++ HV+ I +V
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVS 389
Score = 150 bits (380), Expect = 7e-39
Identities = 49/276 (17%), Positives = 88/276 (31%), Gaps = 36/276 (13%)
Query: 54 YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI 113
V T+ + S YK A NK G G ++ + + P +P +
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-----------GPEITLQPDM 559
Query: 114 H-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM---------------SKKSIG 157
+ + + + C + S ++ WY+ ++ +
Sbjct: 560 QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSN 619
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
+L +E+ N + D G+Y C A + + + E AP+
Sbjct: 620 STNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER---VAPTITGNLENQ 676
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
G I++ C S P P++ WFK ++ + E S I + + I
Sbjct: 677 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR------NLTIRRVRKE 730
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
D G Y C + G + IE E T
Sbjct: 731 DEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 118 bits (296), Expect = 4e-28
Identities = 40/350 (11%), Positives = 97/350 (27%), Gaps = 68/350 (19%)
Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
+ C + +++L+ P + I+ ++ T +Q C
Sbjct: 8 AVALWLCVETRAASVGLPSVSLD----------LPRLSIQKDILTIKANTTLQ--ITCRG 55
Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
+ + W ++ ++ D + I IG D+G Y+C + S
Sbjct: 56 QRDLDWLWPNNQSGSEQRVEVTE---CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS 112
Query: 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV--WFHEGKE 351
+ + + +E K VV+ C + + + E +
Sbjct: 113 VIYVYVQDYRSPFIA--SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF 170
Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
+ +RISW+ + G+ C K + + + +
Sbjct: 171 VPDGNRISWD-------SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV------ 217
Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
V+ + V+ + +S +
Sbjct: 218 ------------------------------------VVGYRIYDVVLSPSHGIELSVGEK 241
Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGI 521
+V+ C + + + E + K +K +V+ + + +L
Sbjct: 242 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 291
Score = 107 bits (267), Expect = 2e-24
Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 24/199 (12%)
Query: 13 EGEPTKQIE---ANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLY-----YLAVLTIKNVQ 64
+ + + Q H G L + TL + + ++ + ++ +KN
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNAS 633
Query: 65 KSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVM 122
D G+Y +A+++ + V L V AP G+ + +
Sbjct: 634 LQDQGDYVCLAQDRKTKKRHCVVRQ-------LTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 123 ECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
C +P P I+W++ + + + I + + L I K+D G Y C A
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR-------NLTIRRVRKEDEGLYTCQA 739
Query: 183 CNSIGESNANIALNFQGGE 201
C+ +G + +G +
Sbjct: 740 CSVLGCAKVEAFFIIEGAQ 758
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 189 bits (481), Expect = 6e-56
Identities = 51/329 (15%), Positives = 107/329 (32%), Gaps = 47/329 (14%)
Query: 103 KAPRFPKKPTIH-QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
P F + + ++++C V I+WY+ + I +
Sbjct: 6 TGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD------- 58
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
+ L I +K D G Y + G+ + + L + + +
Sbjct: 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA-------FKELMMEVCKKIAL 111
Query: 221 SGTLIQMKCKCSAK----------PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
S T ++++ +V W ++ S ++K V + +I
Sbjct: 112 SATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQI--- 168
Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP--------------EGDPPTFIE 316
+P D G Y + + ++L+ +A E +
Sbjct: 169 -NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227
Query: 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK 376
P + + Q GK + + C V P PE+ W K L D + + + + +
Sbjct: 228 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN--LKFEAGRTA-YFTIN 284
Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTLNI 405
D+G Y +KN +G ++ T+++
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 165 bits (420), Expect = 5e-47
Identities = 53/268 (19%), Positives = 87/268 (32%), Gaps = 26/268 (9%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
L I K D+G Y+VI K+ G+ S + L + K I
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120
Query: 116 DGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ + + V + W I + R+K + L+IN PT +D
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG-----VTGEQIWLQINEPTPND 175
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGF--------------APSFIEKPRIIPNE 220
G Y + + L+ Q + A P ++ +
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G + + C P PEV W K +K + + E T I DSG
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN-LKFEAGRTAYFT--INGVSTADSG 292
Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPE 308
Y VKN++G ++ +++ PE
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVF---IPE 317
Score = 163 bits (414), Expect = 4e-46
Identities = 54/312 (17%), Positives = 117/312 (37%), Gaps = 40/312 (12%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
P F+E + +KCK + K + W+K ++ + K +D
Sbjct: 7 GPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF----KDGIC 61
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA--EAEPEGDPPTFIEKPKIRSE 323
++ IT+ D+G Y +K++ G+ + L L EA E E + ++ +
Sbjct: 62 TLL--ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 324 QGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
+ + + V ++ W H G ++ +DR+ + G++ L++ +P D
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK--TGVTGEQI--WLQINEPTPND 175
Query: 383 TGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQ 442
G Y + + + L+ + +Y ++ +
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQ-------------------------AYDEAYAEFQR 210
Query: 443 FKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
K+ ++ + V+ +P VVTI + K + + C V P V+W+K + + D+
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270
Query: 503 VHIEQVKDVSMN 514
+ E +
Sbjct: 271 LKFEAGRTAYFT 282
Score = 112 bits (282), Expect = 8e-28
Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 22/180 (12%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
H GS ++ SDR+ + + +Q L I +D G+Y + + TV+L
Sbjct: 143 SHNGSAIRYSDRVKTGVTGEQIW------LQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196
Query: 89 N----------FSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIW 136
+ F +A P + Q+G L + C + P P++ W
Sbjct: 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256
Query: 137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+ K + + ++ IN + D G Y N G ++ ++
Sbjct: 257 LKNEKALASDDHCNLKFEAGRTAY----FTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 183 bits (466), Expect = 1e-52
Identities = 77/384 (20%), Positives = 136/384 (35%), Gaps = 46/384 (11%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG--SSTV 86
G +L + + + S L + K D G Y+ A + S T
Sbjct: 57 KKDGLILALGMDDRKQQLPNGS-LLIQNI-LHSRHHKPDEGLYQCEASLGDSGSIISRTA 114
Query: 87 NLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVI 143
+ + RF + GD ++++C + PMP I W + +
Sbjct: 115 KVMVAG-----------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN 163
Query: 144 EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGEN 202
G ++ G L+I+ D G YRC+A N N A + +
Sbjct: 164 PIPGDSRVVVLPSGA------LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILS-DP 216
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
G F+++P + G ++C S P P W + +++++ SK ++ +
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN 276
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
I++ DSGTY C V + +A+ L + PP F+ P
Sbjct: 277 ------LLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-------PPWFLNHPSNLY 323
Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
+ EC V KP+P + W G + +D + + L + K D
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ--IVGGSN-----LRILGVVKSD 376
Query: 383 TGLYKCNIKNFHGELNANLTLNIE 406
G Y+C +N G ++ L +
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIVP 400
Score = 165 bits (420), Expect = 4e-46
Identities = 71/426 (16%), Positives = 134/426 (31%), Gaps = 77/426 (18%)
Query: 95 GKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKM 151
G ++ F +P + G +++ C E+ +P I W + ++ +
Sbjct: 12 HHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRK 71
Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA--NIALNFQGGENGAGFAPS 209
+ G + + + K D G Y+C A S + G
Sbjct: 72 QQLPNGSL-LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG-------PLR 123
Query: 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
F+ + I G + +KC+ P P + W K + + +V +I
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQI-- 181
Query: 270 EITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
+ DSG YRC+ +N N + I ++ F+++P GK
Sbjct: 182 --SRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR-QLYFLQRPSNVIAIEGKD 238
Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
V+EC V P P W + +Q + +++ + L + + +D+G Y C
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKK-YSLLGGSN-----LLISNVTDDDSGTYTC 292
Query: 389 NIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSV 448
+ + ++A+ L +
Sbjct: 293 VVTYKNENISASAELTVL------------------------------------------ 310
Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV----- 503
V P P + + + EC V P+V WMK + V + +
Sbjct: 311 ----VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN 366
Query: 504 -HIEQV 508
I V
Sbjct: 367 LRILGV 372
Score = 139 bits (351), Expect = 1e-36
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 31/253 (12%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
L I +Q DSG Y+ A+N + + + G + F ++P+
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR-----QLYFLQRPSNVI 232
Query: 116 --DGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTK 172
+G V+EC + P P W +G +VI+ + + + S L I+N T
Sbjct: 233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN--------LLISNVTD 284
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
DD G Y C +A+ L P F+ P + I+ +C S
Sbjct: 285 DDSGTYTCVVTYKNENISASAELTVLV-------PPWFLNHPSNLYAYESMDIEFECAVS 337
Query: 233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292
KP P V W K +V S +I+ I + D G Y+C +NE G
Sbjct: 338 GKPVPTVNWMKNGDVVIPSDYFQIVGGSN-------LRILGVVKSDEGFYQCVAENEAGN 390
Query: 293 SNANLNLNIEAEA 305
+ ++ L + A
Sbjct: 391 AQSSAQLIVPKPA 403
Score = 114 bits (288), Expect = 5e-28
Identities = 51/335 (15%), Positives = 105/335 (31%), Gaps = 78/335 (23%)
Query: 184 NSIGESNANIALNFQGGENGAGFAPSFIEKPR---IIPNESGTLIQMKCKCSAK---PRP 237
+ + S+ + + + F+ +P + + L CSA+ P
Sbjct: 5 SELESSHHHHHHGGRR-------SLHFVSEPSDAVTMRGGNVLL-----NCSAESDRGVP 52
Query: 238 EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA-- 295
+KW K ++ + + PD G Y+C S
Sbjct: 53 VIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISR 112
Query: 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT 355
+ + P F+ + + + G V+++C+V PMP I W ++L
Sbjct: 113 TAKVMVAG-------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPI 165
Query: 356 DRISWNVTLKGDKYHIR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
+ + L++ + D+G+Y+C+ +N N
Sbjct: 166 PG--------DSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEA--------- 208
Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
+ R+ S+ G+ + + P V + K
Sbjct: 209 EVRILSDPGLHRQ------------------------------LYFLQRPSNVIAIEGKD 238
Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
V+EC V PS TW++ + ++ +K +
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLG 273
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 179 bits (455), Expect = 3e-52
Identities = 68/310 (21%), Positives = 102/310 (32%), Gaps = 30/310 (9%)
Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
+ PRF K+P I G + C P P + W + K + +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 161 YLLRLEINN-PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
L I T D Y C A NS+GE + L + P+ P++
Sbjct: 65 ----LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
E M C S P PE+ WFK V S+ I + +I D
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL----QIESSEETDQ 176
Query: 280 GTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
G Y C N G S ANL + ++ P F P G V + C
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNV------APRFSILPMSHEIMPGGNVNITCVAV 230
Query: 337 AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
PMP + W ++L D + R ++ +D+ Y C + G
Sbjct: 231 GSPMPYVKWMQGAEDLTPEDDMPVG----------RNVLELTDVKDSANYTCVAMSSLGV 280
Query: 397 LNANLTLNIE 406
+ A + ++
Sbjct: 281 IEAVAQITVK 290
Score = 153 bits (388), Expect = 1e-42
Identities = 63/312 (20%), Positives = 99/312 (31%), Gaps = 59/312 (18%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P FI++P+ SG + C+ + P+P V W K K V I +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
I + P D Y C +N GE + L + E + P P+++ +
Sbjct: 66 RIQPLRTP--RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ M C P PEI WF + + + L+ L+++ + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA----LQIESSEETDQGKY 179
Query: 387 KCNIKNFHGE---LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
+C N G ANL
Sbjct: 180 ECVATNSAGVRYSSPANLY----------------------------------------- 198
Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH-- 501
V +V P +P I V I C + P V WM+ + ++
Sbjct: 199 ----VRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV 254
Query: 502 ---VVHIEQVKD 510
V+ + VKD
Sbjct: 255 GRNVLELTDVKD 266
Score = 148 bits (374), Expect = 1e-40
Identities = 60/296 (20%), Positives = 98/296 (33%), Gaps = 43/296 (14%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGSSTVN 87
KG + + + AVL I+ ++ D Y+ +A+N GE +
Sbjct: 41 NKKGKKVNSQRFETIEFDES-----AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAK 95
Query: 88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIED 145
L ED P P + M C +P P+I W++ ++
Sbjct: 96 LTVLREDQLPSGF----PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE---SNANIALNFQGGEN 202
+ K+ + L+I + + D G Y C A NS G S AN+ + Q
Sbjct: 152 SASNGRIKQ-LRSGA----LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN--- 203
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
AP F P G + + C P P VKW + + + + +
Sbjct: 204 ---VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------ 254
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP 318
+ E+TD DS Y C + G A + ++ P K
Sbjct: 255 GRNVL--ELTDV--KDSANYTCVAMSSLGVIEAVAQITVK-------SLPKAGTKH 299
Score = 96.0 bits (239), Expect = 3e-22
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 29/162 (17%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH- 114
L I++ +++D G+Y+ +A N G SS NL ++V APRF P H
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANL-------YVRVQ-NVAPRFSILPMSHE 216
Query: 115 -QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
G + + CV SPMP + W QG + + + + R +
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG-----------RNVLELTDVK 265
Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
D NY C A +S+G A + + P K
Sbjct: 266 DSANYTCVAMSSLGVIEAVAQITVKS-------LPKAGTKHH 300
Score = 44.0 bits (104), Expect = 6e-05
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 11/68 (16%)
Query: 48 DQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF 107
+ ++ DS Y +A + G + + +K P+
Sbjct: 247 TPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQIT-------VKSL----PKA 295
Query: 108 PKKPTIHQ 115
K H
Sbjct: 296 GTKHHHHH 303
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 177 bits (449), Expect = 2e-51
Identities = 55/327 (16%), Positives = 120/327 (36%), Gaps = 38/327 (11%)
Query: 102 GKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
G P K+ ++ D L EC + +P + W + ED+ R+++
Sbjct: 1 GIDPFT-KEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVES----- 53
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-----FQGGENGAGFAPSFIEK 213
++ + DD G Y C+ ++ G +++ + + F ++
Sbjct: 54 KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS 113
Query: 214 PR-IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT 272
+ E G + +V + +K + E K K+ ++ E+ +
Sbjct: 114 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF--ME 171
Query: 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGD------------PPTFIEKPKI 320
D GTY +++ +++ + L + + + + P F+E
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 321 RSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
V+++CKV K IVW+ + +E+ ++ K L + +
Sbjct: 232 EVTGECN-VLLKCKVANIKKETHIVWYKDEREISVDEKH----DFKDGIC--TLLITEFS 284
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIE 406
K+D G+Y+ +K+ G+ + L L E
Sbjct: 285 KKDAGIYEVILKDDRGKDKSRLKLVDE 311
Score = 159 bits (404), Expect = 7e-45
Identities = 52/292 (17%), Positives = 102/292 (34%), Gaps = 33/292 (11%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ S RL +++++ T K++ D G Y + +G SS +
Sbjct: 37 SKDYVSTEDSPRLEVESKGNKTKM------TFKDLGMDDLGIYSCDVTDTDGIASSYLID 90
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP----TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE 144
+ K P P K I + G + + S + + K I
Sbjct: 91 EEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF 150
Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-------- 196
+ + KM ++T ++ + + +D G Y + +++ + L
Sbjct: 151 EGPKYKMHID---RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
Query: 197 ----FQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKES 251
FQ E P F+E + +KCK + K + W+K ++ +
Sbjct: 208 KEAEFQRQEWIRKQGPHFVEYLSWEVTGECN-VLLKCKVANIKKETHIVWYKDEREISVD 266
Query: 252 SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
K +D ++ IT+ D+G Y +K++ G+ + L L EA
Sbjct: 267 EKHDF----KDGICTLL--ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 143 bits (363), Expect = 5e-39
Identities = 41/306 (13%), Positives = 108/306 (35%), Gaps = 42/306 (13%)
Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
G P E + ++ + +C P+ E W K ++S ++++ + +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVE--SKGNK 57
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA-----EPEGDPPTFIEKPK 319
++ D D G Y C+V + G +++ L E + P ++
Sbjct: 58 TKMT--FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115
Query: 320 -IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
+ + G++ K ++ + KE+ + + + + + I + ++
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYK--MHIDRNTGIIEMFMEKL 173
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS 438
+ ED G Y +++ ++ + L ++ + ++ + +
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR-------------K 220
Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEKNTVKE 497
P F + ++ + V+++CKV ++ E + W K++ +
Sbjct: 221 QGPHFVE---------------YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265
Query: 498 DNKHVV 503
D KH
Sbjct: 266 DEKHDF 271
Score = 92.7 bits (230), Expect = 6e-21
Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 40/200 (20%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
G P E + G + EC P E W + + + R+ V KG+K
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLE--VESKGNK 57
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
++ KD +D G+Y C++ + G ++ L E+ R +
Sbjct: 58 T--KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLA---------------- 99
Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPSVT 487
S +F V + V I +K V + + V
Sbjct: 100 --------LSHEHKF----------PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141
Query: 488 WMKEKNTVKEDNKHVVHIEQ 507
++ + + E K+ +HI++
Sbjct: 142 YIFNEKEIFEGPKYKMHIDR 161
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 184 bits (468), Expect = 4e-51
Identities = 70/458 (15%), Positives = 139/458 (30%), Gaps = 99/458 (21%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
L I N+ ++SG Y A N + + T + K +D
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI-----TVYAEPPKPFITSNNSNPVED 303
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
D + + C E +W+ + + + R+++S + L + + T++D G
Sbjct: 304 EDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNR-------TLTLLSVTRNDVG 355
Query: 177 NYRCNACNSIGESNAN-IALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
Y C N + +++ + LN G + +PS+ P + +L C ++ P
Sbjct: 356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY---YRPGVNLSL---SCHAASNP 409
Query: 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEFGESN 294
+ W + + + ++ I I +SG Y C N +
Sbjct: 410 PAQYSWLIDGNIQQHTQELFI----------------SNITEKNSGLYTCQANNSASGHS 453
Query: 295 ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ 354
I AE P I + + V C+ +A+ +W+ G+ L
Sbjct: 454 RTTVKTITVSAEL---PKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPV 509
Query: 355 TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYR 414
+ R+ G++ L + + + D Y C I+N +
Sbjct: 510 SPRLQ---LSNGNR---TLTLFNVTRNDARAYVCGIQNSVSANRS--------------- 548
Query: 415 VRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVV---PVIREVPKVVTISKKKT 471
+TL V+ P +
Sbjct: 549 --------------------------------DPVTLDVLYGPDTPIISPPDSSYLSGAN 576
Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
+ + C S P +W + V+ I ++
Sbjct: 577 LNLSCHSASNPSPQYSWRINGIPQQHT--QVLFIAKIT 612
Score = 172 bits (436), Expect = 1e-46
Identities = 64/443 (14%), Positives = 127/443 (28%), Gaps = 90/443 (20%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L I+N+ ++D+G Y + + + F + K +D
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFR-----VYPELPKPSISSNNSKPVEDK 126
Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
D + C E +W+ + + + R+++S + L + N T++D +
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN-------RTLTLFNVTRNDTAS 178
Query: 178 YRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
Y+C N + ++ LN G + P SG + + C ++ P
Sbjct: 179 YKCETQNPVSARRSDSVILNVLYGP------DAPTISPLNTSYRSGENLNLSCHAASNPP 232
Query: 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN 296
+ WF + + ++ I + +SG+Y C N N
Sbjct: 233 AQYSWFVNGTFQQSTQELFIPNITVN---------------NSGSYTCQAHNSDTGLNRT 277
Query: 297 LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD 356
I AEP P FI + V + C+ + + +W+ + L +
Sbjct: 278 TVTTITVYAEP---PKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSP 333
Query: 357 RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVR 416
R+ + L + + D G Y+C I+N
Sbjct: 334 RLQL------SNDNRTLTLLSVTRNDVGPYECGIQNELSV-------------------- 367
Query: 417 SNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIEC 476
+ L P + + C
Sbjct: 368 ------------------------DHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSC 403
Query: 477 KVMSMYEPSVTWMKEKNTVKEDN 499
S +W+ + N +
Sbjct: 404 HAASNPPAQYSWLIDGNIQQHTQ 426
Score = 170 bits (433), Expect = 2e-46
Identities = 75/479 (15%), Positives = 144/479 (30%), Gaps = 109/479 (22%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS-TVN 87
+ L +S RL + + +R LT+ NV ++D+ YK +N S +V
Sbjct: 145 WVNNQSLPVSPRLQ---LSNGNR-----TLTLFNVTRNDTASYKCETQNPVSARRSDSVI 196
Query: 88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
LN G AP T ++ G+ L + C ++P W+ + T
Sbjct: 197 LNVLY--------GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ 248
Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
L I N T ++ G+Y C A NS N A
Sbjct: 249 ----------------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT---VYAEPP 289
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
FI P E + + C+ + W+ ++ + S ++++ + + T +
Sbjct: 290 KPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQL--SNDNRTLTL 346
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
+ D G Y C ++NE +++ + LN+ P P +
Sbjct: 347 -----LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG------PDDPTISPSYTYYRP 395
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G + + C + P + W +G Q T L + + ++++GL
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ---------------ELFISNITEKNSGL 440
Query: 386 YKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445
Y C N + I +
Sbjct: 441 YTCQANNSASGHSRTTVKTITVSA------------------------------------ 464
Query: 446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
+ + K V C+ + + W+ ++ + +
Sbjct: 465 ------ELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSN 517
Score = 168 bits (427), Expect = 1e-45
Identities = 70/380 (18%), Positives = 122/380 (32%), Gaps = 67/380 (17%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVN 87
+ L +S RL L D LT+ +V ++D G Y+ +N+ S V
Sbjct: 323 WVNNQSLPVSPRL--QLSNDNR------TLTLLSVTRNDVGPYECGIQNELSVDHSDPVI 374
Query: 88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
LN P P T ++ G L + C ++P W + + T
Sbjct: 375 LNVLYG------P--DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ 426
Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
L I+N T+ + G Y C A NS + A
Sbjct: 427 E----------------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS---AELP 467
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
I P E + C+ A+ W+ + + S ++++ + T +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLS--NGNRTLTL 524
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
+ D+ Y C ++N + ++ + L++ P T I P S
Sbjct: 525 -----FNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG------PDTPIISPPDSSYLS 573
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G + + C + P P+ W G Q T L + + G
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIPQQHTQ---------------VLFIAKITPNNNGT 618
Query: 386 YKCNIKNFHGELNANLTLNI 405
Y C + N N ++ +I
Sbjct: 619 YACFVSNLATGRNNSIVKSI 638
Score = 120 bits (301), Expect = 6e-29
Identities = 49/252 (19%), Positives = 85/252 (33%), Gaps = 41/252 (16%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ-- 115
L I N+ + +SG Y A N S T + V
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKT-------ITVSAELPKPSISSNNSKPVE 480
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
D D + C EA +W+ + + + R+++S + L + N T++D
Sbjct: 481 DKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGN-------RTLTLFNVTRNDA 532
Query: 176 GNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
Y C NS+ + ++ L+ G + I P SG + + C ++
Sbjct: 533 RAYVCGIQNSVSANRSDPVTLDVLYG------PDTPIISPPDSSYLSGANLNLSCHSASN 586
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEFGES 293
P P+ W + + + I I P ++GTY C V N
Sbjct: 587 PSPQYSWRINGIPQQHTQVLFI----------------AKITPNNNGTYACFVSNLATGR 630
Query: 294 NANLNLNIEAEA 305
N ++ +I A
Sbjct: 631 NNSIVKSITVSA 642
Score = 91.6 bits (227), Expect = 1e-19
Identities = 35/302 (11%), Positives = 76/302 (25%), Gaps = 73/302 (24%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC------------ 269
G + + + W+K +++ I ++ Q T
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 270 EITDPIGPDSGTYRCNVKN-EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
I + I D+G Y +V + A + E P I + +
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL-----PKPSISSNNSKPVEDKDA 128
Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
V C+ + + +W+ + L + R+ ++ + + + DT YKC
Sbjct: 129 VAFTCEPETQD-ATYLWWVNNQSLPVSPRLQ--LSNGNRTLTLF----NVTRNDTASYKC 181
Query: 389 NIKNFHGELN-ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
+N ++ LN+
Sbjct: 182 ETQNPVSARRSDSVILNV------------------------------------------ 199
Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
L P + + + + C S +W + + I
Sbjct: 200 ---LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELF--IPN 254
Query: 508 VK 509
+
Sbjct: 255 IT 256
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 176 bits (448), Expect = 3e-50
Identities = 75/393 (19%), Positives = 132/393 (33%), Gaps = 56/393 (14%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS-TVN 87
G + ++ + S L Q SD G Y+ A+ G SS ++
Sbjct: 42 KKDGKSYNWQEHNAALRKDEGS-------LVFLRPQASDEGHYQCFAETPAGVASSRVIS 94
Query: 88 LNFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMEC-VLEASPMPDIIWY-QGTKVI 143
+ P K +G ++C + A P P I W + +
Sbjct: 95 FRKTY-----------LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD 143
Query: 144 EDTGRIKMSKK-SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA----LNFQ 198
+ ++ + G D L + D Y C A N+ + +
Sbjct: 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 203
Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIV 258
+G P + + ++G + + C + P +FK K V + + +I
Sbjct: 204 KDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR 263
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEK 317
+ + ++ + D G Y C V N G+ + L L + + P + +K
Sbjct: 264 HNRTSGKRLL--FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-------APKYEQK 314
Query: 318 PK--IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR--- 372
P+ I +QG V + CKV P P +VW H K L G + +
Sbjct: 315 PEKVIVVKQGQD-VTIPCKVTGLPAPNVVWSHNAKPLS------------GGRATVTDSG 361
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L +K + D G Y C N HG+ + +
Sbjct: 362 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 159 bits (403), Expect = 8e-44
Identities = 71/419 (16%), Positives = 125/419 (29%), Gaps = 75/419 (17%)
Query: 97 LKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSK 153
L V K P +P + ++ + V+EC++E + W + K +
Sbjct: 1 LPVD--KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR 58
Query: 154 KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIE 212
K G L P D G+Y+C A G +++ + + +
Sbjct: 59 KDEGS------LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK-------TYLIASPA 105
Query: 213 KPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKII---VNEQDDTYEII 268
K G Q+ C +A P+P + W K ++ + + D
Sbjct: 106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165
Query: 269 CEITDPIGPDSGTYRCNVKNEFGESN---ANLNLNIEAEAEPEGD-PPTFIEKPKIRSEQ 324
+T D Y C KN + + + P K +
Sbjct: 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAK 225
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G + ++ C + PM +F GK++ + RL K ED G
Sbjct: 226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK--RLLFKTTLPEDEG 283
Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
+Y C + N G+ + S
Sbjct: 284 VYTCEVDNGVGK-------------------------------PQKHSLK---------- 302
Query: 445 KYSVLTLSVVPVIREVPK-VVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
LT+ P + P+ V+ + + + V I CKV + P+V W + V
Sbjct: 303 ----LTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV 357
Score = 100 bits (251), Expect = 3e-23
Identities = 38/312 (12%), Positives = 74/312 (23%), Gaps = 57/312 (18%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTY 265
P ++P + ++C + + W K K + + + +
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSL 64
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
P D G Y+C + G + + K ++
Sbjct: 65 VF----LRPQASDEGHYQCFAETPAGVASSRVISFRK---------TYLIASPAKTHEKT 111
Query: 323 EQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISW---NVTLKGDKYHIRLEVKDP 378
G+ ++C + A P P I W ++ +T D V
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS 438
D Y C KN + V + + + +
Sbjct: 172 DVSDIYKYVCTAKNAAVDE----------------EVVLVEYEIKGVTKDNSGYKGE--- 212
Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED 498
PV + V K + +I C S + K V +
Sbjct: 213 ----------------PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN 256
Query: 499 NKHVVHIEQVKD 510
+ +
Sbjct: 257 PEDRITRHNRTS 268
Score = 75.7 bits (186), Expect = 5e-15
Identities = 30/225 (13%), Positives = 60/225 (26%), Gaps = 53/225 (23%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKY 369
P ++P + V+EC ++ + W +GK + + +G
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--- 62
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
L P+ D G Y+C + G S
Sbjct: 63 --SLVFLRPQASDEGHYQCFAETPAGV------------------ASSRV---------- 92
Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPSVTW 488
+ + T + + ++C + + Y +P +TW
Sbjct: 93 -----------------ISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW 135
Query: 489 MKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIY 533
K + + ++ + L+ IV K S Y
Sbjct: 136 KKRLSGADPNADVTDFDRRIT-AGPDGNLYFTIVTKEDVSDIYKY 179
Score = 38.0 bits (88), Expect = 0.006
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNKHVVHIEQ 507
L + PV+++ P V + V+EC + + +W K+ + + +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 178 bits (452), Expect = 1e-49
Identities = 57/364 (15%), Positives = 112/364 (30%), Gaps = 39/364 (10%)
Query: 58 LTIKNVQKS-DSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRF--PKKPTI 113
+ IK+V+++ + S L K++ P K +
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFIL-------KVRPAFKAVPVVSVSKASYL 222
Query: 114 HQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
++G+ + C ++ W + + + L I++
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARV 282
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
+D G + C A N+ G +N L GF F + G + + +
Sbjct: 283 NDSGVFMCYANNTFGSANVTTTLEVV----DKGFINIFPMINTTVFVNDGENVDLIVEYE 338
Query: 233 AKPRPE-VKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
A P+PE +W ++ + + NE + Y +T G + GTY V N
Sbjct: 339 AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD 398
Query: 291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK 350
+ N+ + KP+I + +++C P P I W+
Sbjct: 399 VNAAIAFNVYVNT-------------KPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPG 445
Query: 351 ELQQTDRISWNV--------TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
Q+ V K ++ + + G +C N G+ +A
Sbjct: 446 TEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFN 505
Query: 403 LNIE 406
+
Sbjct: 506 FAFK 509
Score = 160 bits (405), Expect = 3e-43
Identities = 51/455 (11%), Positives = 117/455 (25%), Gaps = 90/455 (19%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
+ + +++G+Y K+ +++ + V + ++
Sbjct: 82 WITEKAEATNTGKYTCTNKHGLS---NSIYVF---------VRDPAKLFLVDRSLYGKED 129
Query: 118 DLLVMECVLEASPMPDIIWYQGTKV-IEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDG 175
+ ++ C L + + + R K+ + I + +
Sbjct: 130 NDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA--------GIMIKSVKRAYHR 181
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
C+ G+S + + P G + C
Sbjct: 182 LCLHCSVDQE-GKSVLSEKFILK-VRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS 239
Query: 236 RP-EVKWFKADKLVKESSKIKIIVNEQDDTYEI-ICEITDPIGPDSGTYRCNVKNEFGES 293
W + + K K + + I+ DSG + C N FG +
Sbjct: 240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA 299
Query: 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPE-IVWFHEG 349
N L + D P I + G+ V + + +A P PE W +
Sbjct: 300 NVTTTLEVV-------DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352
Query: 350 KELQ-QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
+ + + + +Y L + + + G Y + N + +
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN-- 410
Query: 409 RFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISK 468
P+++T +
Sbjct: 411 ---------------------------------------------TK-----PEILTYDR 420
Query: 469 KKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
+++C EP++ W T + + V+
Sbjct: 421 LVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVL 455
Score = 154 bits (391), Expect = 3e-41
Identities = 51/297 (17%), Positives = 95/297 (31%), Gaps = 39/297 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ S K+ ++ +S D + A LTI + + +DSG + A N G + T L
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQD-----GDLLVMECVLEASPMPDII-WYQGTKV 142
+ P I+ G+ + + EA P P+ W +
Sbjct: 306 EVVD-----------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRT 354
Query: 143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN 202
D ++ Y+ L + +GG Y NS + +
Sbjct: 355 FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---- 410
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQ- 261
KP I+ + ++C + P P + W+ + S + V+ Q
Sbjct: 411 ---------TKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQT 461
Query: 262 -------DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311
+ I +GT C N+ G+++A N + + + P
Sbjct: 462 LNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
Score = 122 bits (308), Expect = 4e-30
Identities = 50/463 (10%), Positives = 114/463 (24%), Gaps = 99/463 (21%)
Query: 67 DSGEY----KVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF-PKKPTIHQD-GDLL 120
+ ++ ++ + + G +V+ P P K + GD +
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-----------PPSIHPGKSDLIVRVGDEI 54
Query: 121 VMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
+ C + W + + + G Y C
Sbjct: 55 RLLCTDPGF----VKWTFEILDETNENKQN-------------EWITEKAEATNTGKYTC 97
Query: 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVK 240
+ + S I + + R + + ++C + P
Sbjct: 98 TNKHGLSNS---IYVFVRD-------PAKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNY 146
Query: 241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNL 299
K + ++ I + + + C+V E + L
Sbjct: 147 SLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY----HRLCLHCSVDQEGKSVLSEKFIL 202
Query: 300 NIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRI 358
+ + P + G+ + C +K W E + + ++
Sbjct: 203 KVRPAFKA---VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKY 259
Query: 359 -SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRS 417
SW+ + L + R D+G++ C N G N TL +
Sbjct: 260 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV----------- 308
Query: 418 NKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECK 477
+ + V ++ + V + +
Sbjct: 309 ---------------------DKGFI-----------NIFPMINTTVFVNDGENVDLIVE 336
Query: 478 VMSMYEPS-VTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWL 519
+ +P W+ T + + E ++ EL L
Sbjct: 337 YEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379
Score = 95.5 bits (237), Expect = 5e-21
Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 38/202 (18%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ +++S + Y++ L + ++ ++ G Y + N + + N+
Sbjct: 349 IYMNRTFTDKWE-DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV 407
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ---------G 139
+ P + +++CV P P I WY
Sbjct: 408 Y-------VNTK----PEI----LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSA 452
Query: 140 TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
+ + D + S G +++ I++ G C A N +G+++A F+G
Sbjct: 453 SVLPVDVQTLNSSGPPFG--KLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Query: 200 GENGAGFAPSFIEKPRIIPNES 221
K +I P+
Sbjct: 511 -----------NNKEQIHPHHH 521
Score = 81.6 bits (201), Expect = 1e-16
Identities = 45/355 (12%), Positives = 85/355 (23%), Gaps = 94/355 (26%)
Query: 173 DDGGNYRC----NACNSIGESNANIALNFQGGENGAGFAPSFIEKPR---IIPNESGTLI 225
++ C G S +++ PS + + L
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-------PPSIHPGKSDLIVRVGDEIRL- 56
Query: 226 QMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
C+ VKW +K + ++G Y C
Sbjct: 57 ----LCTDPG--FVKWTFEILDETNENKQNEWI------------TEKAEATNTGKYTCT 98
Query: 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVW 345
K+ S + + + DP + + ++ C + P
Sbjct: 99 NKHGLSNS---IYVFVR-------DPAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYS 147
Query: 346 FH--EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
+GK L + R + K I ++ R C++
Sbjct: 148 LKGCQGKPLPKDLRFIPD-----PKAGIMIK-SVKRAYHRLCLHCSVDQEGKS------- 194
Query: 404 NIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKV 463
V S K I+ V P FK PV+
Sbjct: 195 -----------VLSEKFIL---------------KVRPAFKAV--------PVVSVSKAS 220
Query: 464 VTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFEL 517
+ + + + C + + TW +E + K K+ + L
Sbjct: 221 YLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATL 275
Score = 42.0 bits (98), Expect = 5e-04
Identities = 13/80 (16%), Positives = 25/80 (31%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
G P I+ F + S + + + + +I + +G +
Sbjct: 431 AGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVE 490
Query: 73 VIAKNKNGEGSSTVNLNFSE 92
A N G+ S+ N F
Sbjct: 491 CKAYNDVGKTSAYFNFAFKG 510
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 171 bits (435), Expect = 2e-49
Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 29/305 (9%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
+ G+ C P + + I T R+ + K+ +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS--- 60
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
RL I N +D G YRC A ++ G++ A + L +F E +
Sbjct: 61 --RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-------KLTFREVVSPQEFK 111
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G ++ C+ S+ P P V W ++ V S + + ++ I + D G
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ-----ILNINKSDEG 166
Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
YRC + E ++ + P + +K + + G+ + C+ P
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPA---ISMPQKSFNATAERGEEMTFSCRASGSPE 223
Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
P I WF GK +++ ++ LKG L V++ D G Y C N GE
Sbjct: 224 PAISWFRNGKLIEENEKY----ILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQ 277
Query: 401 LTLNI 405
L +
Sbjct: 278 AFLQV 282
Score = 133 bits (337), Expect = 2e-35
Identities = 52/272 (19%), Positives = 94/272 (34%), Gaps = 48/272 (17%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
+ LTI N D+G Y+ A + G+ L++ + F + + +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEA--------TVVLEIY--QKLTFREVVSPQE 109
Query: 116 --DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
G+ + C + +SP P + W + + + + + L+I N K
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN------NLQILNINKS 163
Query: 174 DGGNYRCNACN-SIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES---GTLIQMKC 229
D G YRC + GE + + P I P+ N + G + C
Sbjct: 164 DEGIYRCEGRVEARGEIDFRDIIVIV-------NVPPAISMPQKSFNATAERGEEMTFSC 216
Query: 230 KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
+ S P P + WF+ KL++E+ K + + + + + I D G Y C N+
Sbjct: 217 RASGSPEPAISWFRNGKLIEENEKYILKGSNTE------LTVRNIINSDGGPYVCRATNK 270
Query: 290 FGESNANLNLNIEAEAEPEGDPPTFIEKPKIR 321
GE L + +
Sbjct: 271 AGEDEKQAFLQV-------------FVQHHHH 289
Score = 124 bits (314), Expect = 2e-32
Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 61/299 (20%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+ G C +P + + + + ++ +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
I + D+G YRC + G++ A + L I TF E + +
Sbjct: 64 I----YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-------KLTFREVVSPQEFKQ 112
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G+ + C+V + P P + W + +E+ + + + L++ + K D G+
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-----LQILNINKSDEGI 167
Query: 386 YKCNIKNF-HGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
Y+C + GE++ + I V P
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVP-------------------------------PAI- 195
Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
+ + T + + + C+ EP+++W + ++E+ K+++
Sbjct: 196 -----------SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 243
Score = 84.9 bits (210), Expect = 2e-18
Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 49/195 (25%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
G+ C +P + +G+++ T R+ ++ +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRV----VVQKEGVR 59
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
RL + + ED G+Y+C + G+ +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQ------------------TQEATV---------- 91
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
VL + REV + + + C+V S P+V+W+
Sbjct: 92 -----------------VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 134
Query: 491 EKNTVKEDNKHVVHI 505
V + + +
Sbjct: 135 HNEEVTTISDNRFAM 149
Score = 46.3 bits (110), Expect = 1e-05
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ G L++ +++ L + L T++N+ SD G Y A NK GE L
Sbjct: 229 FRNGKLIEENEKY--ILKGSNTEL------TVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Query: 89 N 89
Sbjct: 281 Q 281
Score = 32.9 bits (75), Expect = 0.24
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
+ + V +S ++ C + S+ W + + VV
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIG-EPESIDWYNPQGEKIISTQRVV 52
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 174 bits (443), Expect = 2e-49
Identities = 77/390 (19%), Positives = 135/390 (34%), Gaps = 53/390 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVN 87
++ ++ + L + GEY+ A+NK G S+ +
Sbjct: 52 TRNSRFFNIAKDPRVSMRRRSGTLVIDFR--SGGRPEEYEGEYQCFARNKFGTALSNRIR 109
Query: 88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQD---GDLLVMEC-VLEASPMPDIIWY-QGTKV 142
L S+ +P +PK+ G L ++C P P I W +
Sbjct: 110 LQVSK-----------SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP 158
Query: 143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGESN---ANIALNFQ 198
I R+ G L +N D +Y CNA + L
Sbjct: 159 ITQDKRVSQGHN--GD------LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVL 210
Query: 199 GGENGAGFAPSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK 255
A PSF+ ++ G + ++C S P P++ W+K + S K K
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAK 269
Query: 256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315
E + I +++ DSG Y C N+ G +++ ++A P ++
Sbjct: 270 F---ENFNKALRITNVSEE---DSGEYFCLASNKMGSIRHTISVRVKA-------APYWL 316
Query: 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEV 375
++PK G+ + C+ P P + W G+ LQ +
Sbjct: 317 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD-----TIIF 371
Query: 376 KDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+D + +Y+CN N HG L AN +++
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 146 bits (371), Expect = 3e-39
Identities = 67/416 (16%), Positives = 137/416 (32%), Gaps = 82/416 (19%)
Query: 104 APRF---PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKV-IEDTGRIKMSKKSIGK 158
P K I D +++EC + +P P W + I R+ M ++S
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS--- 72
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPR-I 216
T ++ ++ G Y+C A N G + +N L +P + ++
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK-------SPLWPKENLDP 125
Query: 217 IPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
+ + G + ++C P P + W + K ++ D Y + D
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQGHNGDLYFSNVMLQD-- 182
Query: 276 GPDSGTYRCNVKNEFGESN---ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ---GGKLV 329
Y CN + F + L + P+F+ S Q G +
Sbjct: 183 --MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
++EC P P+I W+ +G +L +D+ + + ++ L + + +ED+G Y C
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDL-PSDKAKF------ENFNKALRITNVSEEDSGEYFCL 293
Query: 390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVL 449
N G + +++ ++
Sbjct: 294 ASNKMGSIRHTISVRVK------------------------------------------- 310
Query: 450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHI 505
P + PK + ++ + + C+ +P+V WM ++ +
Sbjct: 311 ---AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE 363
Score = 102 bits (255), Expect = 1e-23
Identities = 47/321 (14%), Positives = 96/321 (29%), Gaps = 71/321 (22%)
Query: 207 APSFIEKP----RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
P+ ++ + P ++ I ++C+ P P W + + + ++ + +
Sbjct: 16 PPTITKQSAKDHIVDPRDN---ILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKP- 318
T I G Y+C +N+FG + L + P + ++
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV---------SKSPLWPKENL 123
Query: 319 -KIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKEL-QQTDRISWNVTLKGDKYHIRLEV 375
+ ++G + ++C P P I W E Q R+S GD L
Sbjct: 124 DPVVVQEGAP-LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVS--QGHNGD-----LYF 175
Query: 376 KDPRKEDT-GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYH 434
+ +D Y CN + I+ +V + +G+
Sbjct: 176 SNVMLQDMQTDYSCNARFHFTH-------TIQQKNPFTLKVLTTRGVA------------ 216
Query: 435 RDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNT 494
P F + + + +++EC + P + W K+
Sbjct: 217 ---ERTPSF-----------MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD 262
Query: 495 VKEDNKHVV------HIEQVK 509
+ D I V
Sbjct: 263 LPSDKAKFENFNKALRITNVS 283
Score = 37.2 bits (86), Expect = 0.011
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 449 LTLSVVPVI-REVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
L+ P I ++ K + + ++IEC+ PS W + V + +
Sbjct: 11 NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR 70
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 172 bits (438), Expect = 7e-49
Identities = 78/359 (21%), Positives = 122/359 (33%), Gaps = 52/359 (14%)
Query: 58 LTIKNV-QKSDSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
L I N + D+G Y+ IA N G S L F+ F +
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY-----------LENFKTRTRSTV 112
Query: 116 D---GDLLVMEC-VLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP 170
G +V+ C S W +D R + L I
Sbjct: 113 SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN--------LYIAKV 164
Query: 171 TKDDGGNYRCNACNSIGESN---ANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQ 226
K D GNY C N++ L + + P + P +P E GT ++
Sbjct: 165 EKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVK 224
Query: 227 MKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
++C P P + W +AD + N I EI + D+G+Y C
Sbjct: 225 LECFALGNPVPTILWRRADGKPIARKARRHKSNG-------ILEIPNFQQEDAGSYECVA 277
Query: 287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
+N G++ A L A P +++ + V ECK +P P W
Sbjct: 278 ENSRGKNVAKGQLTFYA-------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330
Query: 347 HEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
G L DRI ++ L + D G+Y+C +N HG + ++ L++
Sbjct: 331 KNGDPLLTRDRIQ----IEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 151 bits (383), Expect = 5e-41
Identities = 78/428 (18%), Positives = 139/428 (32%), Gaps = 95/428 (22%)
Query: 102 GKAPRFPKKPT-----IHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTG-RIKMSKK 154
G P F ++P+ + + + + C ++ +P P I W GT V R +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 155 SIGKDTYLLRLEINNPTKD-DGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIE 212
S L INNP K D G Y+C A NS G + A L F + +F
Sbjct: 63 S---------LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF-------AYLENFKT 106
Query: 213 KPR-IIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
+ R + G + + C W + + ++ + + E + Y
Sbjct: 107 RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNR-RFVSQETGNLY----- 160
Query: 271 ITDPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
I D G Y C V N + E +P ++ P+ + G
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
V +EC P+P I+W + K + LE+ + ++ED G Y
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKAR----RHKSNG---ILEIPNFQQEDAGSY 273
Query: 387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKY 446
+C +N G+ A L
Sbjct: 274 ECVAENSRGKNVAKGQLTFY---------------------------------------- 293
Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV--- 503
P ++ + ++ +++V ECK +P+ W+K + + ++ +
Sbjct: 294 ------AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG 347
Query: 504 --HIEQVK 509
+I V
Sbjct: 348 TLNITIVN 355
Score = 141 bits (356), Expect = 2e-37
Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 31/267 (11%)
Query: 44 TLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
QD R L I V+KSD G Y + N +
Sbjct: 143 PSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202
Query: 102 GKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGK 158
+ + P + G + +EC +P+P I+W K I R S
Sbjct: 203 YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI--- 259
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
LEI N ++D G+Y C A NS G++ A L F P++++ I
Sbjct: 260 ------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA-------QPNWVQIINDIH 306
Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP- 277
+ +CK + +P+P +W K + +I+I + T I +
Sbjct: 307 VAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNI-----TIVNLS 357
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAE 304
D+G Y+C +N+ G ++ L++ AE
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 102 bits (256), Expect = 6e-24
Identities = 51/294 (17%), Positives = 88/294 (29%), Gaps = 57/294 (19%)
Query: 203 GAGFAPSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G G P F+++P + +++ C+ P+P ++W V + V
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV- 59
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
D + I D+GTY+C N FG + EA+ +
Sbjct: 60 -VDGSLLINNPNKT---QDAGTYQCIATNSFGTIVSR-----EAKLQFAYLENFKTRTRS 110
Query: 320 IRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKEL-QQTDRISWNVTLKGDKYHIRLEVKD 377
S + G+ +V+ C W Q R G+ L +
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETGN-----LYIAK 163
Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDF 437
K D G Y C + N N ++G + R+
Sbjct: 164 VEKSDVGNYTCVVTNTVT----------------------NHKVLGPPTPLILRNDGVMG 201
Query: 438 SVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKE 491
P + + P+ V K TV +EC + P++ W +
Sbjct: 202 EYEP-------------KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242
Score = 92.6 bits (230), Expect = 2e-20
Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 23/160 (14%)
Query: 40 RLSSTLVQDQSRLYYL-AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLK 98
R + ++R + +L I N Q+ D+G Y+ +A+N G+ + L F
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------ 294
Query: 99 VPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
P + + + + EC P P W + + RI++ + +
Sbjct: 295 -----QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT- 348
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L I D G Y+C A N G ++ L+
Sbjct: 349 --------LNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 160 bits (406), Expect = 2e-46
Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 7/203 (3%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
AP F E+ R + + + CK + P+P VKW++ K + I +
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
+++I I D+ Y+ N+ G + +L +E A+ P +E
Sbjct: 61 YHQLI--IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIH--LPKTLEGMGAVHA 116
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
G++V ++ KP P I W + + + + ++D
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQ---VIVTRSFTSLVFPNGVERKDA 173
Query: 384 GLYKCNIKNFHGELNANLTLNIE 406
G Y KN G + L++
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVA 196
Score = 147 bits (374), Expect = 7e-42
Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 12/205 (5%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
G AP F ++ + + C + P P + WY+ G ++I D + ++ + G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
L I + T DD Y+ A N G + +L + P +E +
Sbjct: 61 YHQ----LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA--KIHLPKTLEGMGAV 114
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
G ++ +K S KP P + W K L+ + ++IV + +
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER---K 171
Query: 278 DSGTYRCNVKNEFGESNANLNLNIE 302
D+G Y KN FG + L++
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 110 bits (278), Expect = 2e-28
Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 16/170 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
Y +G + L I +V D+ Y+V A N+ G S T +L
Sbjct: 39 YRQGKEIIADGLKYRIQEFKGG----YHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
P+ + G+++ ++ P P I W +G +I++
Sbjct: 95 EVEVP------AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
G ++ ++ + N + D G Y A N G + L+
Sbjct: 149 GHYQVIV----TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 101 bits (253), Expect = 6e-25
Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 43/196 (21%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P F E+ + + + + CKV P P + W+ +GKE+ KG +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH- 62
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
+L + +D +Y+ N G ++ +L +E
Sbjct: 63 -QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE------------------------ 97
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
V +P E V + + V I+ +P +TW K
Sbjct: 98 -----------------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK 140
Query: 491 EKNTVKEDNKHVVHIE 506
++ + + + V +
Sbjct: 141 GQDLIDNNGHYQVIVT 156
Score = 42.0 bits (99), Expect = 2e-04
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
++ P +E + + + + + CKV +P V W ++ + D
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLK 51
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 165 bits (419), Expect = 3e-46
Identities = 67/360 (18%), Positives = 112/360 (31%), Gaps = 53/360 (14%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
+ V+ D+G Y+ +A N G S +L F F +
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF-----------LQEFSAEERDPVK 112
Query: 117 ---GDLLVMECVLEAS-PMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171
G ++ C P W + ++ G L I
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN------LYIAKTE 166
Query: 172 KDDGGNYRCNACNSIGESNANIALNF-----QGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
D GNY C A + I ++ F + + P +G ++
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVT 226
Query: 227 MKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
++C P P++KW K D + I + D GTY C
Sbjct: 227 LECFAFGNPVPQIKWRKLDGSQ-------TSKWLSSEPLLHIQNVDFE---DEGTYECEA 276
Query: 287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
+N G + I A P +++ G + C KP P + W
Sbjct: 277 ENIKGRDTYQGRIIIHA-------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329
Query: 347 HEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+G+ L +RI + L ED+G+Y+C +N HG + A+ L ++
Sbjct: 330 RDGQPLASQNRIEVS--------GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 144 bits (364), Expect = 2e-38
Identities = 67/427 (15%), Positives = 121/427 (28%), Gaps = 97/427 (22%)
Query: 104 APRFPKKPT-----IHQDGDLLVMECVLEASPMPDIIWYQ-GTKV-IEDTGRIKMSKKSI 156
P F ++P + + + C A+P W GT++ + R ++
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62
Query: 157 GKDTYLLRLEINNPTKD-DGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKP 214
L I+NP K D G+Y+C A N+ G + A L F E+
Sbjct: 63 --------LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF------GFLQEFSAEER 108
Query: 215 RIIPNESGTLIQMKCK-CSAKPRPEVKWFKADK-LVKESSKIKIIVNEQDDTYEIICEIT 272
+ G + C P +W + + + + + Y I
Sbjct: 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY-----IA 163
Query: 273 DPIGPDSGTYRCNVKNEFGESNAN-----LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK 327
D G Y C + + L++ AE + P + P G+
Sbjct: 164 KTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQ 223
Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
+V +EC P+P+I W + +S L +++ ED G Y+
Sbjct: 224 MVTLECFAFGNPVPQIKWRKLDGSQ-TSKWLSSEPL---------LHIQNVDFEDEGTYE 273
Query: 388 CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
C +N G + I
Sbjct: 274 CEAENIKGRDTYQGRIIIH----------------------------------------- 292
Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV---- 503
P +V + C P+V W+++ + N+ V
Sbjct: 293 -----AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE 347
Query: 504 -HIEQVK 509
++
Sbjct: 348 LRFSKLV 354
Score = 142 bits (360), Expect = 7e-38
Identities = 55/273 (20%), Positives = 95/273 (34%), Gaps = 33/273 (12%)
Query: 37 MSDRLSSTLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED 94
+ + + + D R L I + SD G Y A + + +V FS+
Sbjct: 137 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLS 196
Query: 95 GKLKVPGGKAPRFPKKPTIHQ---DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM 151
+ AP K G ++ +EC +P+P I W + G
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK------LDGSQTS 250
Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
S L I N +D G Y C A N G + P ++
Sbjct: 251 KWLSSEP-----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-------QPDWL 298
Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
+ + G+ ++ C S KPRP V+W + + + ++I++
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRF---- 350
Query: 272 TDPIGP-DSGTYRCNVKNEFGESNANLNLNIEA 303
+ DSG Y+C +N+ G A+ L ++A
Sbjct: 351 -SKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 100 bits (251), Expect = 3e-23
Identities = 38/290 (13%), Positives = 68/290 (23%), Gaps = 52/290 (17%)
Query: 206 FAPSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
+ P F E+P + + + C+ A P +W +K + +
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL--VA 60
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
I + D+G+Y+C N G + EA E+
Sbjct: 61 GDLVISNPVKA---KDAGSYQCVATNARGTVVSR-----EASLRFGFLQEFSAEERDPVK 112
Query: 323 EQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
G V+ C P W V+ L +
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN----LYIAKTEAS 168
Query: 382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNP 441
D G Y C + + ++ + + P
Sbjct: 169 DLGNYSCFATSHIDFITKSVFSKF---------------------SQLSLAAEDARQYAP 207
Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKE 491
+ + P + V +EC P + W K
Sbjct: 208 -------------SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL 244
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 162 bits (411), Expect = 1e-45
Identities = 59/338 (17%), Positives = 108/338 (31%), Gaps = 48/338 (14%)
Query: 102 GKAPRFPKKPTIHQD------GDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKK 154
G+A P Q+ GD + + C PM +W + + + R+ + +
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ 61
Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES---NANIALNFQGGENGAG------ 205
L++ N + +D G Y C + + + G++ G
Sbjct: 62 R---------LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAED 112
Query: 206 -----FAPSFIEKPRIIPN----ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI 256
AP + R+ + ++ +C + P P + W K + + +I
Sbjct: 113 TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172
Query: 257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIE 316
I ++ + D G Y C V+N+FG L++ + P
Sbjct: 173 IKLRHQQWSLVMESVVPS---DRGNYTCVVENKFGSIRQTYTLDVLERSPHR--PILQAG 227
Query: 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE----GKELQQTDRISWNVTLKGDKYHIR 372
P ++ G V CKV + P I W G ++ V
Sbjct: 228 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287
Query: 373 -----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L + + ED G Y C N G + + L +
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
Score = 132 bits (334), Expect = 7e-35
Identities = 49/288 (17%), Positives = 83/288 (28%), Gaps = 31/288 (10%)
Query: 45 LVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL----------NFSEED 94
LV + L L + N DSG Y + E++
Sbjct: 50 LVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDE 109
Query: 95 GKLKVPGGKAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
+ AP + + + + + C +P P I W + + R
Sbjct: 110 AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 169
Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP 208
I K + + L + + D GNY C N G L+ E
Sbjct: 170 IGGIKLRHQQWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL--ERSPHRPI 223
Query: 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD----KLVKESSKIKIIVNEQDDT 264
P G+ ++ CK + +P ++W K V + V +
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283
Query: 265 YEIICE-----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
E + + D+G Y C N G S+ + L + E
Sbjct: 284 NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE 331
Score = 126 bits (317), Expect = 2e-32
Identities = 53/332 (15%), Positives = 91/332 (27%), Gaps = 73/332 (21%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+ + SG +++ C P W K + S ++ +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV------GPQR 62
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGD--------------PP 312
+ ++ + DSG Y C + +A + + + P
Sbjct: 63 L--QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120
Query: 313 TFIEKPKIRSE----QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
+ ++ + V C P P I W G+E + RI
Sbjct: 121 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
L ++ D G Y C ++N G + TL+ V
Sbjct: 181 ---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD-----------------------V 214
Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
RS HR + +P T V CKV S +P + W
Sbjct: 215 LERSPHR------------------PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256
Query: 489 MK--EKNTVKEDNKHVVHIEQVKDVSMNFELW 518
+K E N K ++ +K N
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Score = 93.5 bits (232), Expect = 4e-21
Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 21/178 (11%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G + R+ ++ Q L +++V SD G Y + +NK G T L
Sbjct: 158 LKNGREFRGEHRIGGIKLRHQQW-----SLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-----QGTK 141
+ E + P G + C + + P I W G+K
Sbjct: 213 DVLER------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 266
Query: 142 VIEDTGRIKMSKKSIGKDTYLLR---LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
V D K+ G +T L ++N T +D G Y C A NSIG S+ + L
Sbjct: 267 VGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Score = 81.6 bits (201), Expect = 4e-17
Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 30/192 (15%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
P + + G V + C PM VW +G L ++R+
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL--------VG 59
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
RL+V + ED+G Y C + + RV
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQRV-----------LCHFSVRVTDAPSSGDDEDGED 108
Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
+ P + + R K++ + TV C PS++W+
Sbjct: 109 EAEDTGVDTGAPYWTR----------PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL 158
Query: 490 KEKNTVKEDNKH 501
K + +++
Sbjct: 159 KNGREFRGEHRI 170
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 166 bits (421), Expect = 2e-45
Identities = 59/492 (11%), Positives = 128/492 (26%), Gaps = 109/492 (22%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
K S L Q+R + + I + ++ +GEY + +++ + +
Sbjct: 83 VFKHSSLNCQPH-----FDLQNR--GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
+ ++P + + + C+ E+ P P + W +
Sbjct: 136 SIRN----------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVL------CDSQ 179
Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFA 207
+ K+ + +++ E + G + RC A N +G + ++
Sbjct: 180 GESCKE---ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-------- 228
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P++ G + ++CK + W +K ++E + ++ + T
Sbjct: 229 TPQTTLPQLFLKV-GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287
Query: 267 IIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
I ++ D+G Y C+ +S + I + +
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGFINATNS-----SEDYEID 339
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
+ + KA P W K + N + K G
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS--------ISKFCNHKHQPG 391
Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
Y + +N + TLNI
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIR-------------------------------------- 413
Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
P + C PS TW K + + +
Sbjct: 414 --------RKPQVLAEA--------SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITE 457
Query: 505 IEQVKDVSMNFE 516
+ +
Sbjct: 458 GVWNRKANRKVF 469
Score = 156 bits (396), Expect = 6e-42
Identities = 52/362 (14%), Positives = 99/362 (27%), Gaps = 56/362 (15%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
K + + + + A+N+ G + + + + P+ +
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFT--------IDLNQ--TPQTTLPQLFLKV 241
Query: 117 GDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL-LRLEINNPTKDD 174
G+ L + C + + + W K +E+ +MS S + L +++ ++D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE---KPRIIPNESGTLIQMKCKC 231
G Y C++ +S + FI + +
Sbjct: 302 TGYYTCSSSKHPSQS---ALVTIV--------EKGFINATNSSEDYEIDQYEEFCFSVRF 350
Query: 232 SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
A P+ W + K K D+ Y I G Y + +N+
Sbjct: 351 KAYPQIRCTWTFSRKSFPCEQK------GLDNGYSIS--KFCNHKHQPGEYIFHAENDDA 402
Query: 292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351
+ LNI KP++ +E C P+P W +
Sbjct: 403 QFTKMFTLNI-------------RRKPQVLAE--ASASQASCFSDGYPLPSWTWKKCSDK 447
Query: 352 LQQTDRI----SWNVTLKGDKYH---IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404
WN + + L KC N G + LN
Sbjct: 448 SPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Query: 405 IE 406
Sbjct: 508 SP 509
Score = 151 bits (381), Expect = 7e-40
Identities = 50/455 (10%), Positives = 111/455 (24%), Gaps = 91/455 (20%)
Query: 62 NVQKSDSGEYKVI----AKNKNGEGSSTVNLNFSEEDGKLKV-PGGKAPRFPKKPTIH-- 114
D K + N + G S+ SE L ++ +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ ++ +++A +W + + + + + I T+
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS------MVILKMTETQ 114
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
G Y + ++ + + + + C +
Sbjct: 115 AGEYLLFIQSEATNYTILFTVSIRN-------TLLYTLRRPYFRKMENQDA-LVCISESV 166
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
P P V+W D + ++ + E RC +NE G
Sbjct: 167 PEPIVEWVLCDSQGESCK--------EESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218
Query: 295 ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQ 353
I+ P+ P K G+ + + CK + W E K L+
Sbjct: 219 TR-LFTIDLNQTPQTTLPQLFLKV-------GEPLWIRCKAVHVNHGFGLTWELENKALE 270
Query: 354 QTDRISWNVTLKGDKYHIR--LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
+ + + V + DTG Y C+ + +A +T
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-SALVT--------- 320
Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP--KVVTISKK 469
++ I + I +
Sbjct: 321 ------------------------------------IV---EKGFINATNSSEDYEIDQY 341
Query: 470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
+ + + + TW + + + K + +
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376
Score = 134 bits (339), Expect = 4e-34
Identities = 37/299 (12%), Positives = 74/299 (24%), Gaps = 50/299 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ L+ + + + + + +V ++D+G Y + + +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
E+ G + +A P W K
Sbjct: 320 TIVEK--------GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371
Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
+ + S + K G Y +A N + LN +
Sbjct: 372 KGLDNGYS---------ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR--------- 413
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK-----IKIIVNEQD 262
KP+++ + Q C P P W K ++ + +
Sbjct: 414 ----RKPQVL--AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRK 467
Query: 263 DTYEIICEITDPIGP--DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
+ + T + +C N G S + LN P FI+
Sbjct: 468 VFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG-------PFPFIQDGG 519
Score = 110 bits (275), Expect = 7e-26
Identities = 33/347 (9%), Positives = 88/347 (25%), Gaps = 80/347 (23%)
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
L+ + N+ + +Y + + AL Q + + + + +
Sbjct: 14 LINHKNNDSSVGKSSSYPMVSESPED---LGCALRPQ--------SSGTVYEAAAVEVDV 62
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
I ++ A W + + + + I +G
Sbjct: 63 SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-----QNRGVVSMVILKMTETQAGE 117
Query: 282 YRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP 341
Y +++E ++I + + + + + + C ++ P P
Sbjct: 118 YLLFIQSEATNYTILFTVSIR-------NTLLYTLRRPYFRKMENQ-DALVCISESVPEP 169
Query: 342 EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
+ W + + S ++ E K + +C +N G
Sbjct: 170 IVEWVLCDSQGESCKEES--------PAVVKKEEKVLHELFGTDIRCCARNELGR----- 216
Query: 402 TLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP 461
+ + T+ + +
Sbjct: 217 ------------------------------------------ECTRLFTIDLNQTPQTTL 234
Query: 462 KVVTISKKKTVVIECKVMSMY-EPSVTWMKEKNTVKEDNKHVVHIEQ 507
+ + + + I CK + + +TW E ++E N +
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 163 bits (414), Expect = 3e-45
Identities = 45/358 (12%), Positives = 104/358 (29%), Gaps = 50/358 (13%)
Query: 54 YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI 113
+ + I + ++ +GEY + +++ + ++ ++P
Sbjct: 101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN----------TLLYTLRRPYF 150
Query: 114 HQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
+ + + C+ E+ P P + W + + K+ ++
Sbjct: 151 RKMENQDALVCISESVPEPIVEWVL------CDSQGESCKEESPAVVKKEEKVLHE---L 201
Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK-CS 232
G + RC A N +G + + + + G + ++CK
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDL--------NQTPQTTLPQLFLKVGEPLWIRCKAVH 253
Query: 233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC--EITDPIGPDSGTYRCNVKNEF 290
+ W +K ++E + ++ + T I ++ D+G Y C+
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 291 GESNANLNLNIEAEAEPEGDPPTFI--EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE 348
+S A + + + + + + KA P W
Sbjct: 314 SQS-ALVTIV---------EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS 363
Query: 349 GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
K + N + K G Y + +N + TLNI
Sbjct: 364 RKSFPCEQKGLDN--------GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413
Score = 154 bits (391), Expect = 6e-42
Identities = 54/467 (11%), Positives = 119/467 (25%), Gaps = 100/467 (21%)
Query: 62 NVQKSDSGEYKVI----AKNKNGEGSSTVNLNFSEEDGKLKV-PGGKAPRF--PKKPTIH 114
D K + N + G S+ SE L ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ ++ +++A +W + + + + + I T+
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS------MVILKMTETQ 114
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSA 233
G Y + ++ + + +P E+ + C +
Sbjct: 115 AGEYLLFIQSEATNYTILFTVSIRN-------TLLYTLRRPYFRKMENQDALV--CISES 165
Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT-YRCNVKNEFGE 292
P P V+W D + +++ ++ + + GT RC +NE G
Sbjct: 166 VPEPIVEWVLCDSQGESCK---------EESPAVVKKEEKVLHELFGTDIRCCARNELGR 216
Query: 293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK-VKAKPMPEIVWFHEGKE 351
L T + G+ + + CK V + W E K
Sbjct: 217 ECTRLFTIDL--------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA 268
Query: 352 LQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
L++ + +S T + + V + DTG Y C+ +
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS------------ 316
Query: 410 FIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP--KVVTIS 467
+++T+ I + I
Sbjct: 317 -------------------------------------ALVTIVEKGFINATNSSEDYEID 339
Query: 468 KKKTVVIECKVMSMYEPSVTWMKEKNTVKE-----DNKHVVHIEQVK 509
+ + + + + TW + + DN + +
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNH 386
Score = 116 bits (291), Expect = 3e-28
Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 34/248 (13%)
Query: 61 KNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLL 120
K + + + + A+N+ G + + + P+ + G+ L
Sbjct: 196 KVLHELFGTDIRCCARNELGRECTRLFTIDLNQ----------TPQTTLPQLFLKVGEPL 245
Query: 121 VMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK-DTYLLRLEINNPTKDDGGNY 178
+ C + + + W K +E+ +MS S + +L +++ ++D G Y
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 179 RCNACNSIGESNANIALNFQGGENGAGFAPSFI---EKPRIIPNESGTLIQMKCKCSAKP 235
C++ +S + FI + + A P
Sbjct: 306 TCSSSKHPSQS---ALVTIVE--------KGFINATNSSEDYEIDQYEEFCFSVRFKAYP 354
Query: 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
+ W + K K D+ Y I G Y + +N+ +
Sbjct: 355 QIRCTWTFSRKSFPCEQK------GLDNGYSIS--KFCNHKHQPGEYIFHAENDDAQFTK 406
Query: 296 NLNLNIEA 303
LNI +
Sbjct: 407 MFTLNIRS 414
Score = 84.7 bits (209), Expect = 8e-18
Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 19/171 (11%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ L+ + + + + + +V ++D+G Y + + +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
+ G + + +A P W K +
Sbjct: 320 T-------IVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372
Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
+ S + K G Y +A N + LN +
Sbjct: 373 GLDNGYS---------ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 156 bits (395), Expect = 7e-45
Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 10/200 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP+F + + + G+ + S P PEV WF+ +++ S+ + ++ D +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
+ I +SG Y N G++ + L ++AE P P F+++ + + + G
Sbjct: 65 LT--IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP----PNFVQRLQSMTVRQG 118
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
V ++ +V P P + ++ +G E+Q + ++ +GD Y L + + ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ--ISQEGDLY--SLLIAEAYPEDSGTY 174
Query: 387 KCNIKNFHGELNANLTLNIE 406
N N G + L ++
Sbjct: 175 SVNATNSVGRATSTAELLVQ 194
Score = 136 bits (344), Expect = 1e-37
Identities = 41/202 (20%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
+AP F + + +G E + P+P++ W++ +VI + +
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
+L I TK + G Y A N G++ + L + P+F+++ + +
Sbjct: 64 ---KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA----PPNFVQRLQSMTVR 116
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G+ ++++ + + P P VK+++ ++ S +I ++ D Y ++ I + DSG
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--QEGDLYSLL--IAEAYPEDSG 172
Query: 281 TYRCNVKNEFGESNANLNLNIE 302
TY N N G + + L ++
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194
Score = 112 bits (281), Expect = 8e-29
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ G ++ S + R A LTI V K++SG Y + A N +G+ +ST L
Sbjct: 40 FRDGQVISTSTLPGVQISFSDGR----AKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
E P F ++ + G + ++ + P P + +Y+ I+ +
Sbjct: 96 LVKAET--------APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS 147
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
++S ++ L L I +D G Y NA NS+G + + L Q
Sbjct: 148 LDFQIS-----QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 104 bits (262), Expect = 3e-26
Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 45/196 (22%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PTF + + G E + P+PE+ WF +G+ + + ++ +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA- 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
+L + K ++G Y N G+ + L
Sbjct: 64 -KLTIPAVTKANSGRYSLKATNGSGQATSTAELL-------------------------- 96
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
V + P + + +T+ + V ++ +V + P V + +
Sbjct: 97 -----------------VKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 491 EKNTVKEDNKHVVHIE 506
+ ++ + E
Sbjct: 140 DGAEIQSSLDFQISQE 155
Score = 45.1 bits (107), Expect = 1e-05
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
P + + V + + T E + P V+W ++ + V I +
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 154 bits (391), Expect = 4e-43
Identities = 62/312 (19%), Positives = 104/312 (33%), Gaps = 33/312 (10%)
Query: 103 KAPRF---PKKPTIHQDGDLLVMECVLEASPM-PDIIWY--QGTKVIEDTGRIKMSKKSI 156
+ + P + I G+ C + DI W+ G K+ + RI +
Sbjct: 1 RVLQVDIVPSQGEISV-GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPR 215
T L I N DD G Y+C G A + + F P
Sbjct: 60 DSST----LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPT 108
Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
+ G + C + P + W + V ++ IV + Y I I
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYLQIRGIKKT- 165
Query: 276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE--QGGKLVVMEC 333
D GTYRC + ++ + PPT + I + G+ V + C
Sbjct: 166 --DEGTYRCEGRILARGEINFKDIQVIVNV-----PPTVQARQSIVNATANLGQSVTLVC 218
Query: 334 KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393
P P + W +G+ ++ + D L +++ K D Y C +N
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE--LTIRNVDKNDEAEYVCIAENK 276
Query: 394 HGELNANLTLNI 405
GE +A++ L +
Sbjct: 277 AGEQDASIHLKV 288
Score = 128 bits (323), Expect = 1e-33
Identities = 53/253 (20%), Positives = 93/253 (36%), Gaps = 31/253 (12%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-- 114
LTI N D+G YK + ++G S +K+ F PT
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEA--------TVNVKIFQ--KLMFKNAPTPQEF 112
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
++G+ V+ C + +S P IIW + + ++ S L+I K D
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY------LQIRGIKKTD 166
Query: 175 GGNYRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPN--ESGTLIQMKCK 230
G YRC + +I + P+ + I+ G + + C
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIVN-------VPPTVQARQSIVNATANLGQSVTLVCD 219
Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
P P + W K + ++ + DD+ E+ I + D Y C +N+
Sbjct: 220 ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT--IRNVDKNDEAEYVCIAENKA 277
Query: 291 GESNANLNLNIEA 303
GE +A+++L + A
Sbjct: 278 GEQDASIHLKVFA 290
Score = 109 bits (273), Expect = 7e-27
Identities = 51/310 (16%), Positives = 106/310 (34%), Gaps = 63/310 (20%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKLVKESSKIKI-IVNEQDDTY 265
P G C+ + + ++ WF + ++ +I +V DD+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
+ I + D+G Y+C V E G A +N+ I F P + +
Sbjct: 63 TLT--IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFK 113
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G+ V+ C V + P I+W H+G+++ + + V L+++ +K D G
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEG 168
Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
Y+C + G + +
Sbjct: 169 TYRCEGRILAR------------------------------GEINFKDIQ---------- 188
Query: 445 KYSVLTLSVVPVIREVPKVV--TISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
+ ++V P ++ +V T + ++V + C EP+++W K+ ++ + +
Sbjct: 189 ----VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD 244
Query: 503 VHIEQVKDVS 512
D S
Sbjct: 245 EKHIFSDDSS 254
Score = 44.9 bits (106), Expect = 4e-05
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G ++ + + + LTI+NV K+D EY IA+NK GE ++++L
Sbjct: 231 TKDGEPIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Query: 89 N 89
Sbjct: 287 K 287
Score = 36.4 bits (84), Expect = 0.017
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
V + VP IS ++ C+V + ++W N+ + + D S
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 147 bits (373), Expect = 1e-41
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
+G AP ++ + + + G Q+ C+ +P P++KW++ K + +S K K+ + +
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
T + D G Y C NE GE + L ++A P + K K
Sbjct: 64 TL----TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA---TPQFHPGYPLKEKYYGA 116
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-RKED 382
G + + +P+P + WFH K LQ ++ I T++ +++ L +K+ RK
Sbjct: 117 VGST-LRLHVMYIGRPVPAMTWFHGQKLLQNSENI----TIENTEHYTHLVMKNVQRKTH 171
Query: 383 TGLYKCNIKNFHGELNANLTLNIE 406
G YK + N G ++A L + I+
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 139 bits (351), Expect = 1e-38
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 20/209 (9%)
Query: 99 VPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
G+AP K+ + G+ + C + P+PDI WY+ K + + + KMS
Sbjct: 2 AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMS---- 57
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
D L + ++D G Y C A N +GE + L Q P F +
Sbjct: 58 -SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-------TPQFHPGYPL 109
Query: 217 IPN---ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD 273
G+ +++ +P P + WF KL++ S I I E + +
Sbjct: 110 KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMK-NVQR 168
Query: 274 PIGPDSGTYRCNVKNEFGESNANLNLNIE 302
+G Y+ + N FG +A L++ I+
Sbjct: 169 KT--HAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 106 bits (267), Expect = 7e-27
Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 18/171 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
Y G L S + + D LT+ ++ D G Y IA N+ GE ++ L
Sbjct: 42 YRFGKELIQSRKY--KMSSDGR----THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
P K+ G L + + P+P + W+ G K+++++
Sbjct: 96 LLQAT------PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSEN 149
Query: 149 IKMSKKSIGKDTYLLRLEINNPT-KDDGGNYRCNACNSIGESNANIALNFQ 198
I + + L + N K G Y+ N G +A + + Q
Sbjct: 150 ITIE-----NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 102 bits (257), Expect = 2e-25
Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 47/197 (23%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
G+ P ++ K + + G+ + C++ +P+P+I W+ GKEL Q+ + ++ G
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYK--MSSDGR 61
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
+ L V +ED G+Y C N GE+ + L ++
Sbjct: 62 TH--TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ--------------------- 98
Query: 428 VKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVT 487
PQF + + + T+ + + P++T
Sbjct: 99 -----------ATPQFHP-----------GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Query: 488 WMKEKNTVKEDNKHVVH 504
W + ++ +
Sbjct: 137 WFHGQKLLQNSENITIE 153
Score = 45.1 bits (107), Expect = 2e-05
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGSSTVN 87
+H LL+ S+ ++ + + L +KNVQ K+ +G+YKV N G + ++
Sbjct: 138 FHGQKLLQNSENITIENTEHYT------HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD 191
Query: 88 LNFSEE 93
+ ++
Sbjct: 192 VEIQDK 197
Score = 42.0 bits (99), Expect = 1e-04
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
P IR+ K VT + + C+++ P + W + + + K+ + +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD 59
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 152 bits (386), Expect = 2e-41
Identities = 64/382 (16%), Positives = 130/382 (34%), Gaps = 58/382 (15%)
Query: 44 TLVQDQSRLYYLAV---LTIKNVQKSD------SGEYKVIAKNKNGE-GSSTVNLNFSEE 93
T V D L ++ L + D + Y +A+N+ G S V++
Sbjct: 44 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV- 102
Query: 94 DGKLKVPGGKAPRFPKKP---TIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTG 147
A + + + G+ V++C++ + + + W+ + G
Sbjct: 103 ----------AQYYEADVNKEHVIR-GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG 151
Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDG-GNYRCNACNSIGES---NANIALNFQGGENG 203
K + L I +DG +Y+C + + +A
Sbjct: 152 AEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
+ + + + I + C P P +W+K + + ++N++
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAV--VLNDRVK 266
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
I D + DSG Y C V N G + L + A P + P ++
Sbjct: 267 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-------PLSAKIDPPTQTV 319
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
G+ V C+ P+ + W +GK + ++ + L ++ +KED
Sbjct: 320 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDK 365
Query: 384 GLYKCNIKNFHGELNANLTLNI 405
G+Y+C ++N A+ L +
Sbjct: 366 GMYQCFVRNDRESAEASAELKL 387
Score = 139 bits (351), Expect = 1e-36
Identities = 73/430 (16%), Positives = 119/430 (27%), Gaps = 93/430 (21%)
Query: 103 KAPRF---PKKPTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGK 158
K P F P + +EC +PMP+IIW + D ++ GK
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD-GK 60
Query: 159 DTYLLRLEINNPTKDDG------GNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSF 210
L +D Y C A N G S ++ + A +
Sbjct: 61 ------LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR-DVHVRA-------VVAQYY 106
Query: 211 IEKPRIIPNESGTLIQMKCK---CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
G +KC A V W ++ + E D Y +
Sbjct: 107 EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE------ENYFPGAEYDGKYLV 160
Query: 268 ICE----ITDPIGPDS-GTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPK 319
+ I + D +Y+C K+ +A + E P T K
Sbjct: 161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220
Query: 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
+ + C + P P W+ + + + N +K L +KD
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAV 278
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
ED+G Y C + N G + L +
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVT--------------------------------- 305
Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
+ P T+ + V C+ +V+WMK+ +
Sbjct: 306 -------------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352
Query: 500 KHVVHIEQVK 509
V+ IE VK
Sbjct: 353 -SVLRIESVK 361
Score = 83.1 bits (205), Expect = 2e-17
Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 28/157 (17%)
Query: 42 SSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
+V + L IK+ DSG+Y + N G S L +
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--------- 306
Query: 102 GKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
P G V C +P+ + W + K I + +
Sbjct: 307 --PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV---------- 354
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L I + K+D G Y+C N + A+ L
Sbjct: 355 -----LRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 140 bits (355), Expect = 5e-39
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 4/201 (1%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P F P SG + C+ + PRP++ W K K V I ++ +
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
I + P D Y C N GE + + L + E + PT P+++ +
Sbjct: 66 RIQPLRTP--RDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ M C P PEI WF + + ++ L+ + L+++ + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG-ALQIEQSEESDQGKY 182
Query: 387 KCNIKNFHGE-LNANLTLNIE 406
+C N G +A L +
Sbjct: 183 ECVATNSAGTRYSAPANLYVR 203
Score = 121 bits (306), Expect = 4e-32
Identities = 47/219 (21%), Positives = 71/219 (32%), Gaps = 16/219 (7%)
Query: 103 KAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
PRF + P G + C P P I+W + K + + +
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDD--GSG 62
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
+LR++ T D Y C A N++GE + + L + P+ P++ E
Sbjct: 63 SVLRIQ-PLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK-IKIIVNEQDDTYEIICEITDPIGPDS 279
M C S P PE+ WFK V S+ +I + + I D
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQ--IEQSEESDQ 179
Query: 280 GTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEK 317
G Y C N G A NL +
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRG-------TKHHHHH 211
Score = 94.9 bits (236), Expect = 2e-22
Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 41/191 (21%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP F P ++ G + C+ P P+IVW +GK++
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
++ P D +Y+C N GE++ + L + I
Sbjct: 66 RIQPLRTP--RDEAIYECVASNNVGEISVSTRLTVLREDQIP------------------ 105
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
P I P++ + + +T + C +P +TW K
Sbjct: 106 ---------------------RGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144
Query: 491 EKNTVKEDNKH 501
+ V N +
Sbjct: 145 DFLPVDTSNNN 155
Score = 91.4 bits (227), Expect = 2e-21
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 14/164 (8%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGSSTVN 87
KG + + R D S +VL I+ ++ D Y+ +A N GE S +
Sbjct: 41 NKKGKKVS-NQRFEVIEFDDGS----GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTR 95
Query: 88 LNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
L ED + P P + + M C +P P+I W++ ++
Sbjct: 96 LTVLREDQIPRGF----PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT 151
Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
+ K+ + L+ I + D G Y C A NS G
Sbjct: 152 SNNNGRIKQLRSESIGALQ--IEQSEESDQGKYECVATNSAGTR 193
Score = 43.3 bits (102), Expect = 6e-05
Identities = 10/58 (17%), Positives = 15/58 (25%)
Query: 450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
T P P T C+ P + W K+ V V+ +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDD 59
Score = 41.3 bits (97), Expect = 3e-04
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVN 87
+ + S+ + L I+ ++SD G+Y+ +A N G S+ N
Sbjct: 143 FKDFLPVDTSNNNGRIKQLRSESIG---ALQIEQSEESDQGKYECVATNSAGTRYSAPAN 199
Query: 88 L 88
L
Sbjct: 200 L 200
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 140 bits (353), Expect = 2e-37
Identities = 55/322 (17%), Positives = 110/322 (34%), Gaps = 44/322 (13%)
Query: 110 KPTIHQDGDLLVMECVL-------EASPMPDIIWYQGTKVIE----DTGRIKMSKKSIGK 158
K +G+ + + C SP ++ W++ + R+ +
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA--- 82
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
L + ++D G Y C N+ +I L EN F P +
Sbjct: 83 ------LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF--ENTDAFLPFISYPQILTL 134
Query: 219 NESGTLI--QMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ SG L+ + K +++W+K L+ + ++ + V T ++ + D
Sbjct: 135 STSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV---RGTTHLL--VHDVAL 189
Query: 277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
D+G YRC + + N ++ + + + E P I K S G + + CK
Sbjct: 190 EDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCK 249
Query: 335 VKA---KPMPEIVWFHEGKELQQTDRISWNVTLKGDK---------YHIRLEVKDPRKED 382
V P+ ++W+ ++ VT + + L +ED
Sbjct: 250 VFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRED 309
Query: 383 TGL-YKCNIKNFHGELNANLTL 403
+ +KC + N T+
Sbjct: 310 LHMDFKCVVHNTLSFQTLRTTV 331
Score = 124 bits (312), Expect = 9e-32
Identities = 40/290 (13%), Positives = 84/290 (28%), Gaps = 37/290 (12%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ S + + + L + + DSG Y +N + ++ L
Sbjct: 60 HKNDSARTVPGEEETRMWAQDG------ALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLV----MECVLEASPMPDIIWYQGTKVIE 144
E P + ++ + I WY+ + +++
Sbjct: 114 RVFEN------TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD 167
Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ--GGEN 202
+S + L +++ +D G YRC + NI + + +
Sbjct: 168 KDNEKFLSVRGTTH------LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK 221
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCK---CSAKPRPEVKWFKADKLVKESSKIKIIVN 259
P I + I G+ + + CK + P + W+ A+ ES+ V
Sbjct: 222 KEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVT 281
Query: 260 E---------QDDTYEIICEITDPIGPDSGT-YRCNVKNEFGESNANLNL 299
E ++ E+ D ++C V N +
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 122 bits (308), Expect = 3e-31
Identities = 54/322 (16%), Positives = 94/322 (29%), Gaps = 60/322 (18%)
Query: 207 APSFIEKPR---IIPNESGTL----IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
+ + E L + S PR + W K D + + +
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
QD + + DSGTY C +N ++ L + + P
Sbjct: 78 AQDGA----LWLLPALQEDSGTYVCTTRNASYCDKMSIELRV--FENTDAFLPFISYPQI 131
Query: 320 IRSEQGGKLV--VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
+ G LV + + K +I W+ + L + + +V L V D
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-----HLLVHD 186
Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDF 437
ED G Y+C + H N+T +IE+ R++ K
Sbjct: 187 VALEDAGYYRCVLTFAHEGQQYNITRSIEL------RIKKKKE----------------- 223
Query: 438 SVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY---EPSVTWMKEKNT 494
+PVI K ++ S + I CKV ++ W +T
Sbjct: 224 --------------ETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269
Query: 495 VKEDNKHVVHIEQVKDVSMNFE 516
E + + +
Sbjct: 270 HIESAYPGGRVTEGPRQEYSEN 291
Score = 65.5 bits (159), Expect = 9e-12
Identities = 24/222 (10%), Positives = 52/222 (23%), Gaps = 60/222 (27%)
Query: 297 LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK-------VKAKPMPEIVWFHEG 349
L A K G+ V + C P + W
Sbjct: 4 FTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND 63
Query: 350 KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
+ + L + +ED+G Y C +N ++ L +
Sbjct: 64 SARTVPGEEETRMWAQDGA----LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF--- 116
Query: 410 FIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469
N + + ++
Sbjct: 117 -----------------------------ENTDA------------FLPFISYPQILTLS 135
Query: 470 KTVVIECKVMSMY-----EPSVTWMKEKNTVKEDNKHVVHIE 506
+ V+ C +S + + + W K+ + +DN+ + +
Sbjct: 136 TSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR 177
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 134 bits (340), Expect = 7e-37
Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 22/197 (11%)
Query: 225 IQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
IQ+ + +V W ++ S ++K V + + I +P D G Y
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT--GEQIWLQ--INEPTPNDKGKYV 75
Query: 284 CNVKNEFGESNANLNLNIEAEAEPEGD--------------PPTFIEKPKIRSEQGGKLV 329
+ + ++L+ +A E + P + + Q GK +
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
+ C V P PE+ W K L QTD + + + + + D+G Y
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCN--LKFEAGRTA-YFTINGVSTADSGKYGLV 192
Query: 390 IKNFHGELNANLTLNIE 406
+KN +G ++ T+++
Sbjct: 193 VKNKYGSETSDFTVSVF 209
Score = 126 bits (317), Expect = 1e-33
Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 26/223 (11%)
Query: 101 GGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
G I + + + + + W I + R+K G
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGVT 55
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG-------------- 205
+ L+IN PT +D G Y + + L+ Q +
Sbjct: 56 GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN 115
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
A P ++ + G + + C P PEV W K +K + ++ + Y
Sbjct: 116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
I ++ DSG Y VKN++G ++ +++ PE
Sbjct: 176 FTINGVST---ADSGKYGLVVKNKYGSETSDFTVSVF---IPE 212
Score = 112 bits (282), Expect = 1e-28
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 22/180 (12%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
H GS ++ SDR+ + + +Q L I +D G+Y + + TV+L
Sbjct: 38 SHNGSAIRYSDRVKTGVTGEQIWL------QINEPTPNDKGKYVMELFDGKTGHQKTVDL 91
Query: 89 N----------FSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIW 136
+ F +A P + Q+G L + C + P P++ W
Sbjct: 92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151
Query: 137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+ K + T + ++ IN + D G Y N G ++ ++
Sbjct: 152 LKNEKALAQTDHCNLKFEAGRTAY----FTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 90.3 bits (224), Expect = 7e-21
Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 30/201 (14%)
Query: 315 IEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
+ ++ + + + + V ++ W H G ++ +DR+ + G++ L
Sbjct: 6 LSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK--TGVTGEQI--WL 61
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSY 433
++ +P D G Y + + + L+ + +Y
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ-------------------------AY 96
Query: 434 HRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKN 493
++ + K+ ++ + V+ +P VVTI + K + + C V P V+W+K +
Sbjct: 97 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK 156
Query: 494 TVKEDNKHVVHIEQVKDVSMN 514
+ + + + E +
Sbjct: 157 ALAQTDHCNLKFEAGRTAYFT 177
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 136 bits (345), Expect = 2e-36
Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 7/202 (3%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
AP F E+ R + + + CK + P+P VKW++ K + I +
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
+++I I D+ Y+ N+ G + +L +E + P +E
Sbjct: 61 YHQLI--IASVTDDDATVYQVRATNQGGSVSGTASLEVEVP--AKIHLPKTLEGMGAVHA 116
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
G++V ++ KP P I W + + + + ++D
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQ---VIVTRSFTSLVFPNGVERKDA 173
Query: 384 GLYKCNIKNFHGELNANLTLNI 405
G Y KN G + L++
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDV 195
Score = 126 bits (317), Expect = 1e-32
Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 12/214 (5%)
Query: 101 GGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVI-EDTGRIKMSKKSIG 157
G AP F ++ + C + P P + WY+ K I D + ++ + G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
L I + T DD Y+ A N G + +L + P +E +
Sbjct: 61 YHQ----LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA--KIHLPKTLEGMGAV 114
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
G ++ +K S KP P + W K L+ + ++IV + +
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER---K 171
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311
D+G Y KN FG + L++ +P
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV 205
Score = 97.5 bits (243), Expect = 1e-22
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 12/144 (8%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--Q 115
L I +V D+ Y+V A N+ G S T +L P+ +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV------PAKIHLPKTLEGMGAVHAL 117
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
G+++ ++ P P I W +G +I++ G ++ I ++ + N + D
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDA 173
Query: 176 GNYRCNACNSIGESNANIALNFQG 199
G Y A N G + L+
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVAD 197
Score = 92.9 bits (231), Expect = 4e-21
Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 43/197 (21%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P F E+ + + + + CKV P P + W+ +GKE+ KG +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH- 62
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
+L + +D +Y+ N G ++ +L +E
Sbjct: 63 -QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE------------------------ 97
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
V +P E V + + V I+ +P +TW K
Sbjct: 98 -----------------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK 140
Query: 491 EKNTVKEDNKHVVHIEQ 507
++ + + + V + +
Sbjct: 141 GQDLIDNNGHYQVIVTR 157
Score = 50.5 bits (121), Expect = 6e-07
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
L+ + + + + L + V++ D+G Y V AKN+ G TV L
Sbjct: 139 QKGQDLIDNNGHYQVIVTRSFTSL-----VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 89 NFSEEDGKLKVPGGKAPRFPK 109
+ ++ VP PR K
Sbjct: 194 DVAD------VPD--PPRGVK 206
Score = 37.4 bits (87), Expect = 0.008
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
++ P +E + + + + + CKV +P V W ++ + D
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKY 52
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 131 bits (330), Expect = 3e-35
Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 16/224 (7%)
Query: 193 IALNFQGGENGAGFAPSFIEKPRIIPN----ESGTLIQMKCKCSAKPRPEVKWFKADKLV 248
+A +F + AP + ++ + ++ +C P P ++W K K
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
K+ +I I+ + D G Y C V+NE+G N +L++ +
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
P P S G V CKV + P I W ++ LK K
Sbjct: 118 --PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 369 YHIR-------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ L + + + D G Y C + N+ G+ N + L +
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 115 bits (290), Expect = 1e-29
Identities = 39/227 (17%), Positives = 71/227 (31%), Gaps = 19/227 (8%)
Query: 98 KVPGGKAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM 151
+AP + + + + C +PMP + W + K + RI
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
K + L + + D GNY C N G N L+
Sbjct: 69 YKVRNQHWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR--PILQA 122
Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE- 270
P G ++ CK + +P ++W K + + + + I
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 271 ------ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311
+ + D+G Y C V N G++N + L + + + G
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
Score = 97.3 bits (242), Expect = 3e-23
Identities = 38/196 (19%), Positives = 57/196 (29%), Gaps = 48/196 (24%)
Query: 300 NIEAEAEPEGDPPTFIEKPKIRSE----QGGKLVVMECKVKAKPMPEIVWFHEGKELQQT 355
+ +E P + K+ V C PMP + W GKE +Q
Sbjct: 4 DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63
Query: 356 DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRV 415
RI L ++ D G Y C ++N +G +N L+
Sbjct: 64 HRIGGYKVRNQHW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLD----------- 109
Query: 416 RSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIE 475
V RS HR + +P + V
Sbjct: 110 ------------VVERSRHR------------------PILQAGLPANASTVVGGDVEFV 139
Query: 476 CKVMSMYEPSVTWMKE 491
CKV S +P + W+K
Sbjct: 140 CKVYSDAQPHIQWIKH 155
Score = 95.7 bits (238), Expect = 1e-22
Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 19/176 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G K R+ V++Q L +++V SD G Y + +N+ G + T +L
Sbjct: 54 LKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--- 143
+ E + P G + C + + P I W + +
Sbjct: 109 DVVE------RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSK 162
Query: 144 ---EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+ +K+ K S + L + N T+ D G Y C N IG++N + L
Sbjct: 163 YGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
Score = 35.3 bits (81), Expect = 0.031
Identities = 9/63 (14%), Positives = 24/63 (38%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSM 513
+ ++ + TV C P++ W+K K++++ + + + S+
Sbjct: 19 TNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 78
Query: 514 NFE 516
E
Sbjct: 79 IME 81
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 130 bits (327), Expect = 4e-35
Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 23/213 (10%)
Query: 208 PSFIEKPR-IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
F + + E G + +V + +K + E K K+ ++ E
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE------------GDPPTF 314
+ + D GTY +++ +++ + L + + + P F
Sbjct: 63 MF--MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 315 IEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
+E V+++CKV K IVW+ + +E+ ++ L
Sbjct: 121 VEYLSWEVTGECN-VLLKCKVANIKKETHIVWYKDEREISVDEKH------DFKDGICTL 173
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ + K+D G+Y+ +K+ G+ + L L E
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 119 bits (300), Expect = 3e-31
Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 26/215 (12%)
Query: 105 PRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
F K I + G + + S + + K I + + KM I ++T
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTG 59
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALN------------FQGGENGAGFAPS 209
++ + + +D G Y + +++ + L FQ E P
Sbjct: 60 IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH 119
Query: 210 FIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEII 268
F+E + +KCK + K + W+K ++ + K +D +
Sbjct: 120 FVEYLSWEVTGECN-VLLKCKVANIKKETHIVWYKDEREISVDEKHDF----KDGICTL- 173
Query: 269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
IT+ D+G Y +K++ G+ + L L EA
Sbjct: 174 -LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 91.5 bits (227), Expect = 2e-21
Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 21/181 (11%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ + + ++ + + ++ +Q D G Y ++ STV L
Sbjct: 38 IFNEKEIFEGPKYKMHIDRNTGIIE----MFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 93
Query: 89 NFSEEDGKLK--------VPGGKAPRFPKKPTIH-QDGDLLVMEC-VLEASPMPDIIWYQ 138
K + P F + + ++++C V I+WY+
Sbjct: 94 VGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK 153
Query: 139 GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+ I + + L I +K D G Y + G+ + + L +
Sbjct: 154 DEREISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Query: 199 G 199
Sbjct: 207 A 207
Score = 38.4 bits (89), Expect = 0.002
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMY-EPSVTWMKEKNTVKEDNKHVVHIEQVKDV 511
+ + V I +K V + + V ++ + + E K+ +HI++ +
Sbjct: 2 IDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 130 bits (329), Expect = 3e-34
Identities = 53/319 (16%), Positives = 92/319 (28%), Gaps = 36/319 (11%)
Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMP-DIIWY-QGTKV---IEDTGRIKMSKKSIGKD 159
R K + ++ V C L + I WY +K E RI K+
Sbjct: 8 EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK---- 63
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
L +D G+Y C NS I+ F E + I K ++
Sbjct: 64 -----LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVA 118
Query: 220 ESGTL---IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
G L K P+++W+K K + + V I+ + +
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK----DRLIVMNVAE--- 171
Query: 277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMEC 333
G Y C+ + + + E + P + + G + + C
Sbjct: 172 KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC 231
Query: 334 KVKAKPMPEIVWFHEGKELQQTDR--------ISWNVTLKGDKYHIRLEVKDPRKED-TG 384
V + W G + + D + + L + +
Sbjct: 232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKH 291
Query: 385 LYKCNIKNFHGELNANLTL 403
+ C KN HG A + L
Sbjct: 292 PFTCFAKNTHGIDAAYIQL 310
Score = 121 bits (305), Expect = 5e-31
Identities = 52/286 (18%), Positives = 94/286 (32%), Gaps = 31/286 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
Y S +S +S + Q + L + DSG Y + +N + ++
Sbjct: 41 YKDDSKTPVSTEQASRIHQHKE------KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDL---LVMECVLEASPMPDIIWYQGTKVIED 145
F E + L F +K + DG L + E + +P + WY+ K +
Sbjct: 95 KFVENEPNLCYN--AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152
Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA--LNFQGGENG 203
K RL + N + GNY C+A + I + F E
Sbjct: 153 DNIHFSGVKD--------RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204
Query: 204 AGFAPSFIE-KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES--------SKI 254
P + + + G+ IQ+ C + + W ++ E +
Sbjct: 205 KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSV 264
Query: 255 KIIVNEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGESNANLNL 299
+ N++ T + I++ + C KN G A + L
Sbjct: 265 ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 110 bits (276), Expect = 4e-27
Identities = 45/303 (14%), Positives = 91/303 (30%), Gaps = 55/303 (18%)
Query: 207 APSFIEK--PRIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVNEQDD 263
A E+ I+ + + + C + + + W+K D S++ +++ +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 264 TYEIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
P DSG Y C V+N ++ I K K+
Sbjct: 63 KLWF-----VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117
Query: 323 EQGGKLV---VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
G LV + K + +P++ W+ + K L + V RL V +
Sbjct: 118 AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD-------RLIVMNVA 170
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
++ G Y C+ + +T IE + ++ R V
Sbjct: 171 EKHRGNYTCHASYTYLGKQYPITRVIEFI------------------TLEENKPTRPVIV 212
Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
+P + + + + + C V W + + ED+
Sbjct: 213 SPA------------------NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDD 254
Query: 500 KHV 502
+
Sbjct: 255 PVL 257
Score = 65.9 bits (160), Expect = 6e-12
Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 53/204 (25%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKG 366
E D E+ I ++ V C + I W+ + + + + +
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
+ +L + ED+G Y C ++N L ++
Sbjct: 62 E----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF--------------------- 96
Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE--- 483
V + + + + C M ++
Sbjct: 97 ---------------------VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 484 ---PSVTWMKEKNTVKEDNKHVVH 504
P + W K+ + DN H
Sbjct: 136 NELPKLQWYKDCKPLLLDNIHFSG 159
Score = 32.4 bits (73), Expect = 0.34
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 458 REVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEKNTVKEDNKHVVHIEQVKDV 511
RE ++ S + V C + ++ ++TW K+ + + I Q K+
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 127 bits (320), Expect = 9e-34
Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 17/218 (7%)
Query: 207 APSFIEKPRIIPN----ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
AP + R+ + ++ +C + P P + W K + + +I I
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
++ + D G Y C V+N+FG L++ + P P ++
Sbjct: 71 QWSLVMESVVPS---DRGNYTCVVENKFGSIRQTYTLDVLERSPHR--PILQAGLPANQT 125
Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR--------LE 374
G V CKV + P I W + + K I L
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 375 VKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
+ + + D G Y C NF G L++ R +
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE 223
Score = 114 bits (286), Expect = 5e-29
Identities = 42/249 (16%), Positives = 80/249 (32%), Gaps = 29/249 (11%)
Query: 94 DGKLKVPGGKAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
D V G AP + + + + + C +P P I W + +
Sbjct: 2 DPDTGVDTG-APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
RI K + + L + + D GNY C N G L+ E
Sbjct: 61 RIGGIKLRHQQWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL--ERSPHRP 114
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL----VKESSKIKIIVNEQDD 263
P G+ ++ CK + +P ++W K ++ V + V +
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 264 TYEIICE----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
+ + + + + D G Y C N G + L++ P E+
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH--------GPRAAEEEL 226
Query: 320 IRSEQGGKL 328
+ +++ G +
Sbjct: 227 VEADEAGSV 235
Score = 98.5 bits (245), Expect = 2e-23
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 28/205 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G + R+ ++ Q L +++V SD G Y + +NK G T L
Sbjct: 50 LKNGREFRGEHRIGGIKLRHQQ-----WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 104
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-----QGTK 141
+ E + P G + C + + P I W G+K
Sbjct: 105 DVLE------RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 158
Query: 142 VIEDTGRIKMSKKSIGKDTYL--LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
V D KS ++ +RL + N ++ DGG Y C A N IG + L+ G
Sbjct: 159 VGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Query: 200 GENGAGFAPSFIEKPRIIPNESGTL 224
P E+ + +E+G++
Sbjct: 219 --------PRAAEEELVEADEAGSV 235
Score = 91.9 bits (228), Expect = 3e-21
Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 48/196 (24%)
Query: 302 EAEAEPEGDPPTFIEKPKIRSEQ----GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR 357
+ + + P + ++ + V C P P I W G+E + R
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRS 417
I L ++ D G Y C ++N G + TL+
Sbjct: 62 IGGIKLRHQQW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD------------- 105
Query: 418 NKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECK 477
V RS HR + +P T V CK
Sbjct: 106 ----------VLERSPHR------------------PILQAGLPANQTAVLGSDVEFHCK 137
Query: 478 VMSMYEPSVTWMKEKN 493
V S +P + W+K
Sbjct: 138 VYSDAQPHIQWLKHVE 153
Score = 36.8 bits (85), Expect = 0.010
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 458 REVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
R K++ + TV C PS++W+K + +++
Sbjct: 19 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 62
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 133 bits (334), Expect = 2e-33
Identities = 55/381 (14%), Positives = 112/381 (29%), Gaps = 40/381 (10%)
Query: 38 SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN-FSEEDGK 96
+ R+ + L+ + I ++ SD+G+Y A + + +L E
Sbjct: 170 TGRIRLDIQGTGQLLFSV---VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL 226
Query: 97 LKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKS 155
+ + F ++ C + D++ G + GRI ++
Sbjct: 227 VYEDLRGSVTFHCALGPEV-ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP-- 283
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
+ I K+D G Y C A + + +Q N P +
Sbjct: 284 -QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342
Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWF---------------KADKLVKESSKIKIIVNE 260
+ S + C + K +K++ ++ VK + ++ + E
Sbjct: 343 GVAGSSVAV---LCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399
Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
+ + D+G Y C + E + P +
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV-------EIKIIEGEPNLKVPGNV 452
Query: 321 RSEQGGKLVV---MECKVKAKPMPEIVWFHEGKELQQTDRISWN---VTLKGDKYHIRLE 374
+ G L V CK + W + G + + + V + + L
Sbjct: 453 TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLT 512
Query: 375 VKDPRKEDTGLYKCNIKNFHG 395
+ + D G Y C +K H
Sbjct: 513 LNLVTRADEGWYWCGVKQGHF 533
Score = 122 bits (305), Expect = 1e-29
Identities = 48/405 (11%), Positives = 106/405 (26%), Gaps = 87/405 (21%)
Query: 117 GDLLVMECVLE---ASPMPDIIWYQG------TKVIEDTGRIKMSKK-----SIGKDTYL 162
G+ + + C + W + +I G + + +
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESG 222
+ I ++DD G Y+C + + +++L P + ++ + G
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-------QGPGLLNDTKVYTVDLG 127
Query: 223 TLIQMKCKCSAKPRPEVKWF------------KADKLVKESSKIKI-IVNEQDDTYEIIC 269
+ + C + + K + V + +I + +
Sbjct: 128 RTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSV 187
Query: 270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNI-----EAEAEPEGDPPTFIEKPKIRSEQ 324
I D+G Y C ++ + N +L + E E TF +
Sbjct: 188 VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL---GPE 244
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDT 383
+ C+ + ++V GK RI + + + + RKED
Sbjct: 245 VANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL--LNPQDKDGSFSVVITGLRKEDA 302
Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
G Y C + + ++ + + +
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS------------------------- 337
Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
P VV +V + C S+ +
Sbjct: 338 -----------------PTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Score = 116 bits (291), Expect = 7e-28
Identities = 63/388 (16%), Positives = 116/388 (29%), Gaps = 48/388 (12%)
Query: 38 SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKL 97
+ R + T + V+ I + + DSG YK + S V+L S+ G L
Sbjct: 61 AGRANLTNFPENGTF----VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLL 116
Query: 98 KVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPD-IIWYQGT-----KVIEDTGRIKM 151
+ TI+ C + Y+ VI+ +G +
Sbjct: 117 NDTKVYTVDLGRTVTIN---------CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNP 167
Query: 152 SKKS------IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENG 203
+ G L + IN D G Y C A + NA++ + E
Sbjct: 168 NYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELV 227
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQD 262
+ + E + + C+ S+ +V + +I + ++D
Sbjct: 228 YEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKD 287
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
++ ++ IT D+G Y C ++ + + E P K +
Sbjct: 288 GSFSVV--ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA 345
Query: 323 EQGGKLVVMECKVKAKPMPEIVW--FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-- 378
G V + C K I + EG + + + + +Y RL + +
Sbjct: 346 ---GSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG 402
Query: 379 -----------RKEDTGLYKCNIKNFHG 395
D G Y C
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTL 430
Score = 88.5 bits (218), Expect = 1e-18
Identities = 49/338 (14%), Positives = 87/338 (25%), Gaps = 47/338 (13%)
Query: 30 HKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
R+ + I ++K D+G Y A + +
Sbjct: 268 LGKRAPAFEGRILLNPQDKDGSF----SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323
Query: 90 FSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ---------GT 140
+ PR P G + + C I ++
Sbjct: 324 W----QLFVNEESTIPRSPTVVKGVA-GSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCP 378
Query: 141 KVIEDTGRIKMSKK---SI--GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
+++ G +K + S+ + +N T D G Y C
Sbjct: 379 LLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIK 438
Query: 196 NFQGGENGAGFAPSFIEKPRIIPNESGTL---IQMKCKCSAKPRPEVKWFKADKLVKESS 252
+G P+ + TL CK S+ + KW S
Sbjct: 439 IIEG-------EPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQ 491
Query: 253 KIK-----IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN-EFGESNANLNLNIEAEAE 306
+ +E + + D G Y C VK F A + + +E E
Sbjct: 492 DEGPSKAFVNCDENSRLVSL--TLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE---E 546
Query: 307 PEGDPPTFIEKPKIRSEQGGKLV---VMECKVKAKPMP 341
+ + K + K++ E + KA P
Sbjct: 547 RKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDP 584
Score = 66.9 bits (162), Expect = 6e-12
Identities = 28/235 (11%), Positives = 62/235 (26%), Gaps = 35/235 (14%)
Query: 209 SFIEKPRIIPNESGTLIQMKCKCSAK---PRPEVKWFK------------ADKLVKESSK 253
S I P + + G + + C W + ++ V
Sbjct: 2 SPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61
Query: 254 IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
+ + + + I DSG Y+C + + +++ P
Sbjct: 62 GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS-------LEVSQGPG 114
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL---KGDKYH 370
+ K+ + G+ V + C K + + ++ L I + + +
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174
Query: 371 IR----------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRV 415
+ + + R D G Y C + N L +
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 125 bits (315), Expect = 2e-33
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 9/195 (4%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P I KP+ G + C P P + W K K V + + V EQ
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGIS 64
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
I+ G D Y C +N G++ +A+ L I + P + P R +
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G V+M CK P P I W ++ ++ +LK L++++ R+ED G
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR---YSLKDGF----LQIENSREEDQGK 177
Query: 386 YKCNIKNFHGELNAN 400
Y+C +N G ++
Sbjct: 178 YECVAENSMGTEHSK 192
Score = 116 bits (293), Expect = 3e-30
Identities = 48/226 (21%), Positives = 77/226 (34%), Gaps = 26/226 (11%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
G P +KP + G + C P P I+W + G KV R + +
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTV----LE 58
Query: 158 KDTYLLRLEINNPTK-DDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPR 215
+ + L I D Y C A N +G++ +A+ L G+ P + P
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPG 118
Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
E G + M CK P P + W K V S+ + +D +I +
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---KDGFLQI-----ENS 170
Query: 276 GP-DSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPK 319
D G Y C +N G ++ NL ++ +
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYVKV-------RRVGTKHHH 209
Score = 93.3 bits (232), Expect = 5e-22
Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 41/194 (21%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP I KP+ + + G + C + P P IVW GK++ T + V +
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGIS 64
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
I D Y+C +N G+ ++A+ TL I
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGD-------------------- 104
Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
T + PVI + P I TV++ CK + P++ W+
Sbjct: 105 -------------------KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 145
Query: 490 KEKNTVKEDNKHVV 503
K + V N
Sbjct: 146 KNQTKVDMSNPRYS 159
Score = 89.5 bits (222), Expect = 1e-20
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 20/170 (11%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-SDSGEYKVIAKNKNGE-GSSTV 86
G + + + L Q +++L I+ V+ D Y+ +A+N G+ S+
Sbjct: 41 RKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGRDDAPYECVAENGVGDAVSADA 96
Query: 87 NLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE 144
L E D P + P + + G ++M C +P P+I W + ++
Sbjct: 97 TLTIYEGD----KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD 152
Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
+ K L+I N ++D G Y C A NS+G ++
Sbjct: 153 MSNPRYSLKDG--------FLQIENSREEDQGKYECVAENSMGTEHSKAT 194
Score = 43.6 bits (103), Expect = 5e-05
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
L I+N ++ D G+Y+ +A+N G S L V K R K H
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKA--------TNLYV---KVRRVGTKHHHHH 211
Score = 40.9 bits (96), Expect = 4e-04
Identities = 11/53 (20%), Positives = 15/53 (28%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
P I P+ + C PS+ W K V +EQ
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ 59
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 122 bits (309), Expect = 9e-33
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 19/205 (9%)
Query: 207 APSFI--EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
P+ +K E G + C+ S P P + WF+ KL++E+ K +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN 57
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
E+ + + I D G Y C N+ GE L + P I+ + +
Sbjct: 58 TELT--VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV-------QPHIIQLKNETTYE 108
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKE 381
G+ V + C + +P+PEI W T+ + + +KG L +KD +
Sbjct: 109 NGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 382 DTGLYKCNIKNFHGELNANLTLNIE 406
D+G Y C + G ++ L+IE
Sbjct: 168 DSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 112 bits (283), Expect = 4e-29
Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 28/209 (13%)
Query: 104 APRF--PKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
P P+K T + G+ + C SP P I W++ K+IE+ + + +
Sbjct: 2 MPAISMPQKSFNATAER-GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT-- 58
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
L + N DGG Y C A N GE L P I+
Sbjct: 59 -----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV-------QPHIIQLKNETT 106
Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-----IIVNEQDDTYEIICEITD 273
E+G + + C +P PE+ W +A + K I V Q + + I D
Sbjct: 107 YENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH--IKD 163
Query: 274 PIGPDSGTYRCNVKNEFGESNANLNLNIE 302
DSG Y C + G ++ L+IE
Sbjct: 164 VKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 92.6 bits (230), Expect = 6e-22
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 22/173 (12%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ G L++ +++ L + LT++N+ SD G Y A NK GE L
Sbjct: 39 FRNGKLIEENEKYI--LKGSNT------ELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 90
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTK--VIED 145
P + + + + C E P+P+I W + +
Sbjct: 91 QVFV-----------QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE 139
Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+ + + L I + D G Y C A + IG ++ L+ +
Sbjct: 140 GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 80.6 bits (199), Expect = 8e-18
Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 55/209 (26%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
+ +K + + G+ + C+ P P I WF GK +++ ++ +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI--LKGSNT--- 58
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
L V++ D G Y C N GE L +
Sbjct: 59 -ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF------------------------ 93
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
V P I ++ T + V + C P +TW +
Sbjct: 94 ----------------------VQPHIIQLKNETTY-ENGQVTLVCDAEGEPIPEITWKR 130
Query: 491 EKN--TVKEDNKHVVHIEQVKDVSMNFEL 517
+ T E +K + +VK + L
Sbjct: 131 AVDGFTFTEGDKSLDGRIEVKGQHGSSSL 159
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 121 bits (304), Expect = 4e-32
Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 14/199 (7%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+F E + G ++ C+ S+ P P V W ++ V S + + ++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ- 60
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
I + D G YRC + E ++ + P + +K + + G
Sbjct: 61 ----ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA---ISMPQKSFNATAERG 113
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ + C+ P P I WF GK +++ ++ LKG L V++ D G Y
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKY----ILKGSNT--ELTVRNIINSDGGPY 167
Query: 387 KCNIKNFHGELNANLTLNI 405
C N GE L +
Sbjct: 168 VCRATNKAGEDEKQAFLQV 186
Score = 106 bits (265), Expect = 1e-26
Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 23/206 (11%)
Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
F + + + G+ + C + +SP P + W + + + + +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 58
Query: 162 LLRLEINNPTKDDGGNYRCNACNS-IGESNANIALNFQGGENGAGFAPSFI--EKPRIIP 218
L+I N K D G YRC GE + + P+ +K
Sbjct: 59 ---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI------VNVPPAISMPQKSFNAT 109
Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPD 278
E G + C+ S P P + WF+ KL++E+ K + + + + + I D
Sbjct: 110 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE------LTVRNIINSD 163
Query: 279 SGTYRCNVKNEFGESNANLNLNIEAE 304
G Y C N+ GE L + +
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 87.5 bits (217), Expect = 3e-20
Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-- 114
L I N+ KSD G Y+ + + ++ + V A P+K
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDI-------IVIVNVPPAISMPQKSFNATA 110
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ G+ + C SP P I W++ K+IE+ + + L + N D
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-----ILKGSNTELT--VRNIINSD 163
Query: 175 GGNYRCNACNSIGESNANIALN 196
GG Y C A N GE L
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQ 185
Score = 84.8 bits (210), Expect = 3e-19
Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 47/193 (24%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
TF E + + G+ + C+V + P P + W + +E+ + + +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 58
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
L++ + K D G+Y+C + G +
Sbjct: 59 --LQILNINKSDEGIYRCEGRVEAR------------------------------GEIDF 86
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
R +V P + + T + + + C+ EP+++W +
Sbjct: 87 RDIIVIVNVPPAI------------SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 134
Query: 491 EKNTVKEDNKHVV 503
++E+ K+++
Sbjct: 135 NGKLIEENEKYIL 147
Score = 46.3 bits (110), Expect = 4e-06
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ G L++ +++ L + L T++N+ SD G Y A NK GE L
Sbjct: 133 FRNGKLIEENEKY--ILKGSNTEL------TVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 89 N 89
Sbjct: 185 Q 185
Score = 45.5 bits (108), Expect = 8e-06
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHI 505
+ REV + + + C+V S P+V+W+ V + + +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM 53
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 123 bits (309), Expect = 3e-31
Identities = 46/322 (14%), Positives = 91/322 (28%), Gaps = 32/322 (9%)
Query: 114 HQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS--IGKDTYLLRLEINNPT 171
L S +IWY + + I I K+ L
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLWFRPTL 87
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI--QMKC 229
+D GNY C N+ S L ++ I + +
Sbjct: 88 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG 147
Query: 230 KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
+ +P + W+ ++ + + + ++G Y C V
Sbjct: 148 YFPSSVKPTITWYMGCYKIQNFNNVI-----PEGMNLSFLIALI---SNNGNYTCVVTYP 199
Query: 290 FGESNANL--NLNIEAEAEPEGDPPTFIEKPKIRSE---QGGKLVVMECKV----KAKPM 340
+L L ++ P+ P I P + G+ +++ C V
Sbjct: 200 ENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSR 259
Query: 341 PEIVWFHEGKELQQTDR------ISWNVTLKGDKYHIRLEVKDPRKEDTGL-YKCNIKNF 393
E+ W +GK+ + + + L +K ED Y C+ ++
Sbjct: 260 NEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSA 319
Query: 394 HGELNANLTLNIEMV--RFIKY 413
GE+ + ++ R+
Sbjct: 320 KGEVAKAAKVKQKVPAPRYTVE 341
Score = 110 bits (276), Expect = 8e-27
Identities = 44/269 (16%), Positives = 79/269 (29%), Gaps = 33/269 (12%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
VL + +D+G Y + +N L ++D + P +
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD----SCFNSPMKLPVHKLYIEY 135
Query: 117 GDLLV----MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
G + ++ +S P I WY G I++ + L
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM---------NLSFLIALI 186
Query: 173 DDGGNYRCNACNSIGESNANIA--LNFQGGENGAGFAPSFIEKPR---IIPNESGTLIQM 227
+ GNY C ++ L + + P I P + E G + +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246
Query: 228 KCK----CSAKPRPEVKWFKADKLVKES------SKIKIIVNEQDDTYEIICEITDPIGP 277
C R EV W K + ++ +D+T I I
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306
Query: 278 D-SGTYRCNVKNEFGESNANLNLNIEAEA 305
D +Y C+ ++ GE + + A
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKVPA 335
Score = 98.8 bits (245), Expect = 8e-23
Identities = 33/301 (10%), Positives = 73/301 (24%), Gaps = 61/301 (20%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE----QDDTYEIICEITDPIGP 277
++ + + W+ + I + E ++ + +
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD---VLWFRPTLLN 89
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV--VMECKV 335
D+G Y C ++N S L + + P ++ ++
Sbjct: 90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYF 149
Query: 336 KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
+ P I W+ ++Q + + L + G Y C +
Sbjct: 150 PSSVKPTITWYMGCYKIQNFNNVIPEGM--------NLSFLIALISNNGNYTCVVTYPEN 201
Query: 396 ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVP 455
+LT + + V + VP
Sbjct: 202 GRTFHLTRTLTVK-------------------VVGSPKNA------------------VP 224
Query: 456 VIREVPK---VVTISKKKTVVIECKVMSMYE----PSVTWMKEKNTVKEDNKHVVHIEQV 508
+ P V + ++I C V + V W + + V E +
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284
Query: 509 K 509
Sbjct: 285 S 285
Score = 50.6 bits (120), Expect = 5e-07
Identities = 21/204 (10%), Positives = 54/204 (26%), Gaps = 57/204 (27%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN-----VTLKGDKYHIRL 373
+I+ + ++W+ ++ + I++ ++ + D L
Sbjct: 26 RIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD----VL 81
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSY 433
+ DTG Y C ++N L + + K +
Sbjct: 82 WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEV---------------------VQKDSCF 120
Query: 434 HRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVV---IECKVMSMYEPSVTWMK 490
+ P+ V K+ + + ++ S +P++TW
Sbjct: 121 NS-------------------PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161
Query: 491 EKNTVKEDNKHVV-----HIEQVK 509
++ N +
Sbjct: 162 GCYKIQNFNNVIPEGMNLSFLIAL 185
Score = 41.0 bits (95), Expect = 7e-04
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 53 YYLAVLTIKNVQKSD-SGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF 107
+L+IK V D Y A++ GE + + K KVP APR+
Sbjct: 293 TRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV-------KQKVP---APRY 338
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 121 bits (304), Expect = 5e-31
Identities = 47/306 (15%), Positives = 82/306 (26%), Gaps = 40/306 (13%)
Query: 110 KPTIH--------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
P I + G+ + + CV S + W ++ ++
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYW----------TLDPESP 49
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
L N T + G YRC + I L + A S+ + +
Sbjct: 50 GSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD------PAHSWNLLAQEVTVVE 103
Query: 222 GTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G + C + + V + + + I DS
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFI------IRKAKVLDSN 157
Query: 281 TYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
TY C ES + + L + +PP +P G+ + C
Sbjct: 158 TYVCKTMVNGRESTSTGIWLKVNRV---HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAE 214
Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
+ V G + S K L + +D G+Y C N G A
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA-LSLNAVDFQDAGIYSCVASNDVGTRTA 273
Query: 400 NLTLNI 405
+ +
Sbjct: 274 TMNFQV 279
Score = 113 bits (283), Expect = 4e-28
Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 31/252 (12%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
LT +N ++G Y+ GS+T++L K P ++ T+ +
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV-------KDPAHSWNLLAQEVTVVEG 104
Query: 117 GDLLVMECVLEASPM-PDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ V+ C++ + + +G + + S I D
Sbjct: 105 QE-AVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--------GFIIRKAKVLD 155
Query: 175 GGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
Y C + ES + I L P +P + G Q+ C +
Sbjct: 156 SNTYVCKTMVNGRESTSTGIWLKVNRVHPE---PPQIKLEPSKLVRIRGEAAQIVCSATN 212
Query: 234 KPRPEVKWFKADKL---VKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNE 289
K + +S + ++ + + + D+G Y C N+
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL-----NAVDFQDAGIYSCVASND 267
Query: 290 FGESNANLNLNI 301
G A +N +
Sbjct: 268 VGTRTATMNFQV 279
Score = 81.9 bits (202), Expect = 2e-17
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 40 RLSSTLVQDQSRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKL 97
R V ++ ++ I+ + DS Y NG S++ + K+
Sbjct: 126 REGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV-NGRESTSTGIWL-----KV 179
Query: 98 KVPGGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKK 154
+ P+ + G+ + C + + + + G +E
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239
Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
K L +N D G Y C A N +G A +
Sbjct: 240 YYKKVR---ALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
Score = 81.5 bits (201), Expect = 3e-17
Identities = 33/308 (10%), Positives = 76/308 (24%), Gaps = 75/308 (24%)
Query: 213 KPRIIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P I P+ G + ++C + V+W I ++
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDG---------PISPYWTLDPESPG 50
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
+ ++GTYRC + + ++L + +P ++ + + G
Sbjct: 51 STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV---KDP---AHSWNLLAQEVTVVEG 104
Query: 327 KLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ V+ C + + + EG + ++ + D+
Sbjct: 105 QEAVLPCLITDPALKDSVSLMREGGRQVLRKT---VYFFSPWRG---FIIRKAKVLDSNT 158
Query: 386 YKCNIKN-FHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
Y C + + L + V
Sbjct: 159 YVCKTMVNGRESTSTGIWLKVNRV------------------------------------ 182
Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
P I+ P + + + I C + +K +T E +
Sbjct: 183 ------HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 505 IEQVKDVS 512
+
Sbjct: 237 QDNYYKKV 244
Score = 59.6 bits (144), Expect = 5e-10
Identities = 24/200 (12%), Positives = 48/200 (24%), Gaps = 62/200 (31%)
Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
A+P P + G+ V + C + W D S TL
Sbjct: 1 ADP---APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTL 53
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK 424
++ ++TG Y+C + + L ++
Sbjct: 54 ---------TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK------------------ 86
Query: 425 MGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSM-YE 483
+ + VT+ + + V+ C + +
Sbjct: 87 --------------DPAH-------------SWNLLAQEVTVVEGQEAVLPCLITDPALK 119
Query: 484 PSVTWMKEKNTVKEDNKHVV 503
SV+ M+E
Sbjct: 120 DSVSLMREGGRQVLRKTVYF 139
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 117 bits (296), Expect = 7e-31
Identities = 43/201 (21%), Positives = 65/201 (32%), Gaps = 19/201 (9%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP + + C + P+PE+ W + L+K + + E
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLT 65
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
I D G Y C N G + + P P G
Sbjct: 66 I----LSVEDSDDGIYCCTANNGVGGAVESCGALQVKM------KPKITRPPINVKIIEG 115
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
V+ C P P + W L++ RI+ V G L + + +KED G Y
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA--VLESGS-----LRIHNVQKEDAGQY 168
Query: 387 KCNIKNFHGELNANL-TLNIE 406
+C KN G + L L +E
Sbjct: 169 RCVAKNSLGTAYSKLVKLEVE 189
Score = 108 bits (271), Expect = 2e-27
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 30/212 (14%)
Query: 104 APRFPKKPTIHQ--------DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155
A + PK P I ++ C +E+ P P+I W + +I+ ++ S
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD----TRYS 56
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKP 214
I ++ LL I + D G Y C A N +G + + L + P P
Sbjct: 57 IRENGQLLT--ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM-------KPKITRPP 107
Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
+ G + C P+P V W K D ++E+S+I ++ + I +
Sbjct: 108 INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-------LRIHNV 160
Query: 275 IGPDSGTYRCNVKNEFGESNANL-NLNIEAEA 305
D+G YRC KN G + + L L +E A
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
Score = 94.4 bits (235), Expect = 1e-22
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
L+K+ D S +LTI +V+ SD G Y A N G +
Sbjct: 42 TRNKILIKLFDTRYSIRENG-------QLLTILSVEDSDDGIYCCTANNGVGGAVESCGA 94
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
++K+ P+ + P +G V+ C +P P + W +G + +
Sbjct: 95 L------QVKMK----PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN 144
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
RI + + L I+N K+D G YRC A NS+G + + +
Sbjct: 145 SRIAVLESG--------SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184
Score = 88.6 bits (220), Expect = 1e-20
Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 52/201 (25%)
Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVT 363
AE P + ++ C V++ P PEI W ++ D R S +
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS--IR 58
Query: 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVG 423
G L + D G+Y C N G
Sbjct: 59 ENGQL----LTILSVEDSDDGIYCCTANNGVGG--------------------------- 87
Query: 424 KMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE 483
+ L + + P I P V I + V+ C M +
Sbjct: 88 ------------------AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPK 129
Query: 484 PSVTWMKEKNTVKEDNKHVVH 504
PSV+W+K + ++E+++ V
Sbjct: 130 PSVSWIKGDSALRENSRIAVL 150
Score = 43.2 bits (102), Expect = 7e-05
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
PVI + V ++ C V S +P ++W + K +K + E
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 120 bits (301), Expect = 1e-30
Identities = 41/320 (12%), Positives = 87/320 (27%), Gaps = 38/320 (11%)
Query: 101 GGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
G P + + G + + CV S + W ++
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWD----------GPPSPHWTLYS 46
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
D L NN T + G YRC +A I L + A + + +
Sbjct: 47 DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK------DPARPWNVLAQEVV 100
Query: 219 NESGTLIQMKCKCSA-KPRPEVKWFKAD-KLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ C + V + + + + + I
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF-----SPWHGFT--IHRAKF 153
Query: 277 PDSGTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV 335
S Y+C+ + ++ L ++ + PP P G+ + C
Sbjct: 154 IQSQDYQCSALMGGRKVMSISIRLKVQ---KVIPGPPALTLVPAELVRIRGEAAQIVCSA 210
Query: 336 KAKPMPEIV-WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
+ + V H +L + ++ + + L + + G Y C N
Sbjct: 211 SSVDVNFDVFLQHNNTKLAIPQQSDFHNN--RYQKVLTLNLDQVDFQHAGNYSCVASNVQ 268
Query: 395 GELNANLTLNIEMVRFIKYR 414
G+ + ++ + +
Sbjct: 269 GKHSTSMFFRVVESAGNSHH 288
Score = 111 bits (279), Expect = 1e-27
Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 38/272 (13%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
+L+ N ++G Y+ GS+ ++L K P ++ + +D
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV-------KDPARPWNVLAQEVVVFED 104
Query: 117 GDLLVMECVLEA-SPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
D ++ C+L + + + S I+
Sbjct: 105 QD-ALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--------FTIHRAKFIQ 155
Query: 175 GGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
+Y+C+A + + L Q G P+ P + G Q+ C S+
Sbjct: 156 SQDYQCSALMGGRKVMSISIRLKVQKVIPG---PPALTLVPAELVRIRGEAAQIVCSASS 212
Query: 234 KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292
+V + + + N + + +G Y C N G+
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLN--LDQVDFQHAGNYSCVASNVQGK 270
Query: 293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
+ ++ + +E
Sbjct: 271 HSTSMFFRV-------------VESAGNSHHH 289
Score = 80.0 bits (197), Expect = 1e-16
Identities = 33/309 (10%), Positives = 78/309 (25%), Gaps = 76/309 (24%)
Query: 213 KPRIIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P I P+ G + ++C + V+W D +
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP--------SPHWTLYSDGSSS 51
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
I+ + ++GTYRC + +A ++L ++ + +
Sbjct: 52 IL-STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD------PARPWNVLAQEVVVFED 104
Query: 327 KLVVMECKVKA-KPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
+ ++ C + + G+ L + S++ + + +
Sbjct: 105 QDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP--WHG-----FTIHRAKFIQSQ 157
Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
Y+C+ + V S +
Sbjct: 158 DYQCSALMGGRK------------------VMSISIRL---------------------- 177
Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNKHVV 503
+ P + VP + + + I C S+ V + +
Sbjct: 178 -KVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236
Query: 504 HIEQVKDVS 512
H + + V
Sbjct: 237 HNNRYQKVL 245
Score = 43.8 bits (103), Expect = 8e-05
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 20 IEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN 79
++ NF + + H + L + + +R + L + V +G Y +A N
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFH----NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQ 268
Query: 80 GEGSSTVNLN 89
G+ S+++
Sbjct: 269 GKHSTSMFFR 278
Score = 31.9 bits (72), Expect = 0.52
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNT----VKEDNKHVVHIEQV 508
+PVI + + TV + C SV W + + + ++
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGPPSPHWTLYSDGSSSILSTNNA 58
Query: 509 K 509
Sbjct: 59 T 59
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 121 bits (304), Expect = 3e-30
Identities = 48/203 (23%), Positives = 71/203 (34%), Gaps = 21/203 (10%)
Query: 213 KPRII--PNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-----IIVNEQD 262
+P II NE+ + + C +P PE+ W +A + K I V Q
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
+ + I D DSG Y C + G ++ L+IE P FI I
Sbjct: 61 GSSSLH--IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYY 111
Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
G + + C VK+ P I W + L + N+ + LE+ D
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT--NLKTYSTGRKMILEIAPTSDND 169
Query: 383 TGLYKCNIKNFHGELNANLTLNI 405
G Y C N G L +
Sbjct: 170 FGRYNCTATNHIGTRFQEYILAL 192
Score = 112 bits (281), Expect = 4e-27
Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 25/220 (11%)
Query: 110 KPTIHQ-------DGDLLVMECVLEASPMPDIIWYQGTK--VIEDTGRIKMSKKSIGKDT 160
+P I Q + + + C E P+P+I W + + + + +
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
L I + D G Y C A + IG ++ L+ + +AP FI I +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYYSW 113
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G I + C + P + W + ++ + + + EI D G
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL--EIAPTSDNDFG 171
Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
Y C N G L + D P+ KI
Sbjct: 172 RYNCTATNHIGTRFQEYILALA-------DVPSSPYGVKI 204
Score = 100 bits (250), Expect = 4e-23
Identities = 60/328 (18%), Positives = 109/328 (33%), Gaps = 40/328 (12%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--Q 115
L IK+V+ SDSG Y A ++ G ++ L ++ P+F TI+
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYL-------DIEYA----PKFISNQTIYYSW 113
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+G+ + + C ++++P I W + V+ + S G+ LEI + +D
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDF 170
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP-NESGTLIQMKCKCSAK 234
G Y C A N IG L PS +II +++ + S
Sbjct: 171 GRYNCTATNHIGTRFQEYILALAD-------VPSSPYGVKIIELSQTTAKVSFNKPDSHG 223
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
P + K V + + + + + R N G+ +
Sbjct: 224 GVPIHHYQVDVKEVASEIWKIVRSHGVQTMV----VLNNLEPNTTYEIRVAAVNGKGQGD 279
Query: 295 ANLNLNIEAEAEPEGDPP----------TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV 344
+ + E PP +F + + G ++E VK + +
Sbjct: 280 YSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAP--ILEYIVKYRSKDKED 337
Query: 345 WFHEGKELQQTDRISWNVTLKGDKYHIR 372
+ E K D I Y ++
Sbjct: 338 QWLEKKVQGNKDHIILEHLQWTMGYEVQ 365
Score = 77.5 bits (191), Expect = 2e-15
Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 50/204 (24%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD---RISWNVTLKGDK 368
P I+ + + G+ V + C + +P+PEI W T+ + + +KG
Sbjct: 2 PHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
L +KD + D+G Y C + G ++ L+IE
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE---------------------- 98
Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
P + + + I C V S S+ W
Sbjct: 99 ------------------------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHW 134
Query: 489 MKEKNTVKEDNKHVVHIEQVKDVS 512
++K + N +
Sbjct: 135 RRDKLVLPAKNTTNLKTYSTGRKM 158
Score = 48.3 bits (115), Expect = 3e-06
Identities = 25/173 (14%), Positives = 44/173 (25%), Gaps = 41/173 (23%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+L + + + +L I +D G Y A N G L
Sbjct: 135 RRDKLVLPAKNTTNLKTYSTGRK----MILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIHQ------------DGDLLVMECVLEASPMPDIIW 136
++ VP +P K + Q G + + ++ + IW
Sbjct: 191 ALAD------VPS--SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
T + +NN + R A N G+
Sbjct: 243 KIVRSHGVQT-----------------MVVLNNLEPNTTYEIRVAAVNGKGQG 278
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 115 bits (289), Expect = 5e-30
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+ G C +P + + + + ++ +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
I + D+G YRC + G+ A + L I TF E + +
Sbjct: 62 I----YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-------KLTFREVVSPQEFKQ 110
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G+ + C+V + P P + W + +E+ + + + L++ + K D G+
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-----LQILNINKSDEGI 165
Query: 386 YKCNIKNFHG 395
Y+C +
Sbjct: 166 YRCEGRVEAR 175
Score = 109 bits (273), Expect = 9e-28
Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 20/202 (9%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
+ G+ C P + + I T R+ + K+
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-----KEGV 56
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
RL I N +D G YRC A ++ G+ A + L +F E +
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-------KLTFREVVSPQEFK 109
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
G ++ C+ S+ P P V W ++ V S + + + I I D G
Sbjct: 110 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM--LANNNLQILNINK---SDEG 164
Query: 281 TYRCNVKNEFGESNANLNLNIE 302
YRC + E ++ +
Sbjct: 165 IYRCEGRVEARGEIDFRDIIVI 186
Score = 88.7 bits (220), Expect = 1e-20
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 32/186 (17%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
GEP +G + + R+ + + LTI N D+G Y+
Sbjct: 27 IGEPESIDW------YNPQGEKIISTQRVV------VQKEGVRSRLTIYNANIEDAGIYR 74
Query: 73 VIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLEAS 129
A + G+ +TV L + F + + + G+ + C + +S
Sbjct: 75 CQATDAKGQTQEATVVLEIYQ-----------KLTFREVVSPQEFKQGEDAEVVCRVSSS 123
Query: 130 PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
P P + W + + + + + L+I N K D G YRC
Sbjct: 124 PAPAVSWLYHNEEVTTISDNRFAMLANNN------LQILNINKSDEGIYRCEGRVEARGE 177
Query: 190 NANIAL 195
+
Sbjct: 178 IDFRDI 183
Score = 87.5 bits (217), Expect = 3e-20
Identities = 26/197 (13%), Positives = 56/197 (28%), Gaps = 49/197 (24%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
G+ C +P + +G+++ T R+ ++ +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRV----VVQKEGVR 57
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
RL + + ED G+Y+C + G+ +
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQ-------------------------------TQE 86
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
+ VL + REV + + + C+V S P+V+W+
Sbjct: 87 ATV--------------VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 132
Query: 491 EKNTVKEDNKHVVHIEQ 507
V + + +
Sbjct: 133 HNEEVTTISDNRFAMLA 149
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 119 bits (299), Expect = 3e-29
Identities = 41/355 (11%), Positives = 88/355 (24%), Gaps = 52/355 (14%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
T+ + + + + N S P P + +
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 116 DGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ C L+ P+ + + + R+ + +
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVH----LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG 257
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
C + P+ GT ++ KC A
Sbjct: 258 TQRLTCAVILGNQSQETLQTVTIYS-------FPAPNVILTKPEVSEGT--EVTVKCEAH 308
Query: 235 PRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
PR +V + + +++ + +D+ ++ C+ E
Sbjct: 309 PRAKVTLNGVPAQPLGPRAQLLLKATPEDN---------------GRSFSCSATLEVAGQ 353
Query: 294 NANLNLNIEAEAEPEGDPPTFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351
+ N E P E+ P + C+ P+PE+ +G
Sbjct: 354 LIHKNQTRELRVL---YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF 410
Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
VT ++ G Y C ++ GE+ +T+N+
Sbjct: 411 PLPIGESV-TVT----------------RDLEGTYLCRARSTQGEVTREVTVNVL 448
Score = 107 bits (268), Expect = 3e-25
Identities = 51/485 (10%), Positives = 115/485 (23%), Gaps = 105/485 (21%)
Query: 41 LSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVP 100
+ + L + + L + + + + +G+ ++ L
Sbjct: 33 IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYW-------- 84
Query: 101 GGKAPRFPK---KPTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTGRIKMSKK 154
P + P+ G L + C +E ++ +G K ++ +
Sbjct: 85 ---TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR--------E 133
Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKP 214
+ + + G N+ C + + N F
Sbjct: 134 PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ 193
Query: 215 RIIPN--ESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
+ P E T + C P E + L ++ V +D++
Sbjct: 194 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVH----LALGDQRLNPTVTYGNDSFSAKA-S 248
Query: 272 TDPIGPDSGTY--RCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV 329
D GT C V + I + P G V
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS-------FPAPNVILTKPEVSEGTEV 301
Query: 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
++C+ + + G + + L+ +++ + C+
Sbjct: 302 TVKCEAHPRAKVTLNGVPAQPL--------------GPRAQLLLKAT--PEDNGRSFSCS 345
Query: 390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVL 449
V + K ++ P+
Sbjct: 346 ATL----------------------------EVAGQLIHKNQTRELRVLYGPRL------ 371
Query: 450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
R+ P T + C+ P + +K D + I +
Sbjct: 372 ------DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-------DGTFPLPIGESV 418
Query: 510 DVSMN 514
V+ +
Sbjct: 419 TVTRD 423
Score = 96.1 bits (238), Expect = 2e-21
Identities = 36/253 (14%), Positives = 71/253 (28%), Gaps = 54/253 (21%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
+V D G ++ G S + + AP +
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQT-------VTIYSFPAPNVILTKPEVSE 297
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G + ++C EA P + + + +G +L + +D+G
Sbjct: 298 GTEVTVKC--EAHPRAKVTLN------------GVPAQPLGPRA---QLLLKATPEDNGR 340
Query: 177 NYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFIEK--PRIIPNESGTLIQMKCK 230
++ C+A + N L + P E+ P + C+
Sbjct: 341 SFSCSATLEVAGQLIHKNQTRELRVL-------YGPRLDERDCPGNWTWPENSQQTPMCQ 393
Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
P PE+K K + + + GTY C ++
Sbjct: 394 AWGNPLPELKCLKDGTFPLPIGESVTVTRD-----------------LEGTYLCRARSTQ 436
Query: 291 GESNANLNLNIEA 303
GE + +N+ +
Sbjct: 437 GEVTREVTVNVLS 449
Score = 37.5 bits (86), Expect = 0.009
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L + V + G Y A++ GE + V +N
Sbjct: 412 LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 29.8 bits (66), Expect = 2.3
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 12/100 (12%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G V++ C + +T + L G+ + ++
Sbjct: 14 GGSVLVTCSTSCDQPMLLGI--------ETPLPKKELLLPGNNRKVYELS---NVQEDSQ 62
Query: 386 YKCNIKNFHGELNANLTLNIEMV-RFIKYRVRSNKGIVGK 424
C G+ A L + ++ + VGK
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 116 bits (291), Expect = 5e-29
Identities = 51/312 (16%), Positives = 93/312 (29%), Gaps = 30/312 (9%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRL 165
+ G+ +C + + V+ E G+ + K+ L
Sbjct: 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG---DL 91
Query: 166 EINNPTK-DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL 224
I N T D Y C G+ I + PS I + +
Sbjct: 92 WIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR------KPPSCIPETYELGTHDKYG 145
Query: 225 IQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
I + C AK + W+K ++ + + I +P DSG Y
Sbjct: 146 IDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ-------NLIIHNPELEDSGRYD 198
Query: 284 CNVKNEFGESNANLNLNIEAE---AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
C V + ++ ++ + I PKI G + C + +
Sbjct: 199 CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEP-ANITCTAVSTSL 257
Query: 341 PE----IVWFHEGKELQQTD-RISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFH 394
I W + + D + +T G L ++ +E G Y C N++
Sbjct: 258 LVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYY 317
Query: 395 GELNANLTLNIE 406
+ T+ +E
Sbjct: 318 FDKTLTTTVVLE 329
Score = 97.6 bits (242), Expect = 1e-22
Identities = 39/259 (15%), Positives = 67/259 (25%), Gaps = 32/259 (12%)
Query: 57 VLTIKNVQKSDSGE-YKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRF--PKKPT 112
L I N +DS Y KNG+ V + + P
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK-----------PPSCIPETYEL 138
Query: 113 IHQDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171
D + + C +L A +I WY+ + + G L I+NP
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ--------NLIIHNPE 190
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGE--NGAGFAPSFIEKPRIIPNESGTLIQMKC 229
+D G Y C +I ++ + + I G + C
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITC 250
Query: 230 KCSAKPRPE----VKWFKADKLVKESSKIKIIVNEQDDTY-EIICEITDPIGPDSG-TYR 283
+ + W + + E + G TY
Sbjct: 251 TAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYT 310
Query: 284 CNVKNEFGESNANLNLNIE 302
C N + + + +E
Sbjct: 311 CRGHNYYFDKTLTTTVVLE 329
Score = 73.3 bits (179), Expect = 2e-14
Identities = 36/299 (12%), Positives = 77/299 (25%), Gaps = 67/299 (22%)
Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP--DSGTYRCNVKNEFG 291
V W K K + + ++ I Y C V + G
Sbjct: 65 DKDNVVNWEKIGKTRRPLN-----RRVKNGDLWIA-----NYTSNDSHRRYLCTVTTKNG 114
Query: 292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGK 350
+ + + + PP+ I + + + C + AK I W+ +
Sbjct: 115 DCVQGIVRSHIRK------PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ 168
Query: 351 ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRF 410
EL + G L + +P ED+G Y C + + ++ ++
Sbjct: 169 ELIIDGT---KYSQSGQ----NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR----- 216
Query: 411 IKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKK 470
+ +V P + + ++ +
Sbjct: 217 -----------------------CKILTVIPS---------QDHRFKLILDPKINVTIGE 244
Query: 471 TVVIECKV----MSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKR 525
I C + + + + W + + V I L+ V +
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEE 303
Score = 37.1 bits (85), Expect = 0.012
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE-Y 71
+ G ++ + + S L A L +NV + G Y
Sbjct: 253 VSTSLLVDDVLID-WENPSGWIIGLDFGVYSILTSSGG--ITEATLYFENVTEEYIGNTY 309
Query: 72 KVIAKNKNGEGSSTVNLN 89
N + + T +
Sbjct: 310 TCRGHNYYFDKTLTTTVV 327
Score = 36.3 bits (83), Expect = 0.018
Identities = 19/200 (9%), Positives = 42/200 (21%), Gaps = 67/200 (33%)
Query: 316 EKPKIRSEQGGKLVVMECKV---------KAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
+ + G+ +C + W GK + +R N L
Sbjct: 36 TMNDMAAL--GEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLW- 92
Query: 367 DKYHIRLEVKDPRKEDTG-LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKM 425
+ + D+ Y C + +G+
Sbjct: 93 --------IANYTSNDSHRRYLCTVTTKNGDCV--------------------------- 117
Query: 426 GLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EP 484
+ + P + K + + C ++
Sbjct: 118 ------------------QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN 159
Query: 485 SVTWMKEKNTVKEDNKHVVH 504
++TW K + D
Sbjct: 160 NITWYKNNQELIIDGTKYSQ 179
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 112 bits (281), Expect = 6e-29
Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 23/204 (11%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDT 264
P + +I +S + ++C ++ + W K + + K
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-------ASN 55
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
E I P DSG Y C V + AN + ++A P + ++
Sbjct: 56 MEYR--INKPRAEDSGEYHC-VYHFVSAPKANATIEVKA-------APDITGHKRSENKN 105
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS---WNVTLKGDKYHIRLEVKDPRKE 381
G+ +M CK P PE +W + + + S + + K + + + V E
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI-VNLQITE 164
Query: 382 DTGLYKCNIKNFHGELNANLTLNI 405
D G Y+CN N G + + L +
Sbjct: 165 DPGEYECNATNSIGSASVSTVLRV 188
Score = 107 bits (269), Expect = 3e-27
Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 28/206 (13%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDI--IWYQGTKVIEDTGRIKMSKKSIGKD 159
PR I + ++C L +S + W + + T + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM------ 56
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
IN P +D G Y C + + AN + + AP R
Sbjct: 57 ----EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-------APDITGHKRSENK 104
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI---KIIVNEQDDTYEIICEITDPIG 276
G M CK P PE W K + V E + + +++ E+ I +
Sbjct: 105 NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELN--IVNLQI 162
Query: 277 P-DSGTYRCNVKNEFGESNANLNLNI 301
D G Y CN N G ++ + L +
Sbjct: 163 TEDPGEYECNATNSIGSASVSTVLRV 188
Score = 86.8 bits (215), Expect = 6e-20
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 15/154 (9%)
Query: 46 VQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAP 105
+ + I + DSGEY + + + + ++K P
Sbjct: 46 LTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATI-------EVKAA----P 93
Query: 106 RFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL 163
+G +M C P P+ +W + + + + I
Sbjct: 94 DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT 153
Query: 164 RLEINNP-TKDDGGNYRCNACNSIGESNANIALN 196
L I N +D G Y CNA NSIG ++ + L
Sbjct: 154 ELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 82.6 bits (204), Expect = 2e-18
Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 58/194 (29%)
Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI--VWFHEGKELQQTDRISWNVTLKGD 367
+ P + ++ V ++C + + + W G EL T + + N+ +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYR-- 59
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
+ PR ED+G Y C + +F AN T+ ++
Sbjct: 60 -------INKPRAEDSGEYHC-VYHFVSAPKANATIEVK--------------------- 90
Query: 428 VKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVT 487
P I + ++ + ++ CK + P
Sbjct: 91 -------------------------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWM 125
Query: 488 WMKEKNTVKEDNKH 501
W K++N V E+ +
Sbjct: 126 WRKKENGVFEEISN 139
Score = 39.4 bits (92), Expect = 9e-04
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKH----VVHIE 506
P I +V+ V ++C + S W K + K+ I
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRIN 61
Query: 507 QVK 509
+ +
Sbjct: 62 KPR 64
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGSSTVN 87
K + + SS ++ L I N+Q D GEY+ A N G S +
Sbjct: 127 RKKENGVFEEISNSSGRFFIINK-ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTV 185
Query: 88 LN 89
L
Sbjct: 186 LR 187
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 115 bits (288), Expect = 8e-29
Identities = 46/312 (14%), Positives = 88/312 (28%), Gaps = 47/312 (15%)
Query: 117 GDLLVMECVLEASPMPD-----IIWY-------------QGTKVIEDTGRIKMSKKSIGK 158
GD + + C L+ M + W ++ R++ +G
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNS-IGESNANIALNFQGGENGAGFAPSFIEKPRII 217
+ L + +D GNY C G + +I L P + + +
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-------AKPQNTAEVQKV 127
Query: 218 PNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ +C +P ++ W + +S++ ++ + +
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLW-ILVPSSQ 186
Query: 277 PDSGTYRCNVKNEFGES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
D C V++E E +NL + P I G + C
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLTVYYP------PEVSISGYDNNWYLGQNEATLTCD 240
Query: 335 VKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393
++ P P W L L ++ K CN+ N
Sbjct: 241 ARSNPEPTGYNWSTTMGPLPPFAVAQGAQ----------LLIRPVDKPINTTLICNVTNA 290
Query: 394 HGELNANLTLNI 405
G A LT+ +
Sbjct: 291 LGARQAELTVQV 302
Score = 105 bits (262), Expect = 3e-25
Identities = 38/252 (15%), Positives = 66/252 (26%), Gaps = 38/252 (15%)
Query: 58 LTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ- 115
L + ++ D G Y + G S + L + P+ + Q
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR-------VLAK----PQNTAEVQKVQL 129
Query: 116 -DGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
+ + C P I W+ + +T ++ G T + ++
Sbjct: 130 TGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF--LSGTVTVTSLWILVPSSQV 187
Query: 174 DGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC 231
DG N C + E + L I + C
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPP------EVSISGYDNNWYLGQNEATLTCDA 241
Query: 232 SAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNE 289
+ P P W + + Q I P+ + T CNV N
Sbjct: 242 RSNPEPTGYNWSTTMGPLPPFAVA------QGAQLLI-----RPVDKPINTTLICNVTNA 290
Query: 290 FGESNANLNLNI 301
G A L + +
Sbjct: 291 LGARQAELTVQV 302
Score = 67.4 bits (164), Expect = 1e-12
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 22/143 (15%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGS--STVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
+ + + D ++++ E TVNL + P +
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT-------VYYPPEVSISGYDNNWYL 230
Query: 115 QDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
+ + C ++P P W + + + +L I K
Sbjct: 231 G-QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGA-----------QLLIRPVDKP 278
Query: 174 DGGNYRCNACNSIGESNANIALN 196
CN N++G A + +
Sbjct: 279 INTTLICNVTNALGARQAELTVQ 301
Score = 45.5 bits (107), Expect = 2e-05
Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 65/212 (30%)
Query: 326 GKLVVMECKVKAKPMP-----EIVWFHEGK-------------ELQQTDRISWNVTLKGD 367
G V + C ++ M ++ W G+ ++ R+ + G
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 368 KYHI-RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
+ L + R ED G Y C F
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQ------------------------------- 103
Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPS 485
L + P + V ++ + + C
Sbjct: 104 --------------GSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQ 149
Query: 486 VTWMKEKNTVKEDNKHVVHIEQVKDVSMNFEL 517
+TW + + ++ + V+ + L
Sbjct: 150 ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Score = 31.2 bits (70), Expect = 0.76
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 456 VIREVPKVVTISKKKTVVIECKVMSMYEP-----SVTWMKEKNTVKEDNKHVVHIEQVKD 510
V+ + P V +V + C + +TW + + H +
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 111 bits (279), Expect = 2e-28
Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 22/207 (10%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+P IE P + + + CK KP P ++WFK + V + K V +D
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
+ D G Y C KN G++ +A+L + + F +PK
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL--------RDDFRVEPKDTRV 120
Query: 324 QGGKLVVMEC-KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKDP 378
G+ ++EC K P P ++W +G L +S + I L + +
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMS---FGASSRVRIVDGGNLLISNV 177
Query: 379 RKEDTGLYKCNIKNFHGELN---ANLT 402
D G YKC +N G A L
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLI 204
Score = 99.2 bits (247), Expect = 6e-24
Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 28/227 (12%)
Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKD 159
++PR + P + + + + C +E P P I W++ G V + + + G
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG-- 65
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIP 218
+ + DGG Y C A N +G++ + +L A F +P+
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI------AVLRDDFRVEPKDTR 119
Query: 219 NESGTLIQMKC-KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE----ITD 273
G ++C P P + W K + + + + + I+ I++
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR---VRIVDGGNLLISN 176
Query: 274 PIGPDSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKPK 319
D G Y+C +N G ++ L ++
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV-------KAAAHHHHH 216
Score = 94.5 bits (235), Expect = 2e-22
Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 47/201 (23%)
Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362
A + P IE P + + + CKV+ KP P I WF +G+ + ++ S V
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGI 421
K ++ +++D G Y C KN G+ ++ + +L I ++R
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR------------ 108
Query: 422 VGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSM 481
R PK ++K +T ++EC
Sbjct: 109 ---------------------------------DDFRVEPKDTRVAKGETALLECGPPKG 135
Query: 482 Y-EPSVTWMKEKNTVKEDNKH 501
EP++ W+K+ + +
Sbjct: 136 IPEPTLIWIKDGVPLDDLKAM 156
Score = 79.1 bits (195), Expect = 5e-17
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
EG+P IE + G + +++ S + L++ T++ ++ D GEY
Sbjct: 34 EGKPEPTIE------WFKDGEPVSTNEKKSHRVQFKDGALFFY--RTMQGKKEQDGGEYW 85
Query: 73 VIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVL-EA 128
+AKN+ G+ S +L + F +P T G+ ++EC +
Sbjct: 86 CVAKNRVGQAVSRHASLQIAVL----------RDDFRVEPKDTRVAKGETALLECGPPKG 135
Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
P P +IW + ++D + S + L I+N D GNY+C A N +G
Sbjct: 136 IPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195
Query: 189 SNANIA 194
++ A
Sbjct: 196 RESSYA 201
Score = 42.2 bits (99), Expect = 2e-04
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
P I E P + + K + + CKV EP++ W K+ V + K ++
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 110 bits (276), Expect = 5e-28
Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 19/204 (9%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK---IIVNEQD 262
F P +E P + G + CK +P P ++W+K + V+ ++
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
+ + PD G Y C +N GE+ ++ +A E F + P
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH-----DASLEVAILRDDFRQNPSDVM 122
Query: 323 EQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
G+ VMEC+ + P P I W +G L D +T++G K L + RK
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER---ITIRGGK----LMITYTRKS 175
Query: 382 DTGLYKCNIKNFHGELN---ANLT 402
D G Y C N GE A LT
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELT 199
Score = 106 bits (265), Expect = 2e-26
Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 27/222 (12%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDT 160
PR + P I G+ + C E P P I WY+ G +V D + + + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 161 -YLLRLEINNPTKDDGGNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIP 218
+ LR+ ++ D G Y C A N +GE+ + +L A F + P +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV------AILRDDFRQNPSDVM 122
Query: 219 NESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
G M+C+ P P + W K + + + I + IT
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI---RGGKL----MITYTRKS 175
Query: 278 DSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKP 318
D+G Y C N GE + + L + P+F++
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTVLE-------RPSFVKAA 210
Score = 91.0 bits (226), Expect = 3e-21
Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 56/218 (25%)
Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW-- 360
E PP +E P G+ + CK + +P P I W+ G+ ++
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 361 -NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSN 418
+ G + +R+ + D G+Y C +N+ GE ++ + +L + ++R
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR--------- 111
Query: 419 KGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKV 478
R+ P V ++ + V+EC+
Sbjct: 112 ------------------------------------DDFRQNPSDVMVAVGEPAVMECQP 135
Query: 479 MSMY-EPSVTWMKEKNTVKEDNKHVV------HIEQVK 509
+ EP+++W K+ + + + ++ + I +
Sbjct: 136 PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR 173
Score = 79.5 bits (196), Expect = 4e-17
Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 37/208 (17%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSST--LVQDQSRLYYLAVLTIKNVQKSDSGE 70
EG PT IE Y G ++ + ++ L++L + + D G
Sbjct: 34 EGRPTPTIE------WYKGGERVETDKDDPRSHRMLLPSGSLFFLRI-VHGRKSRPDEGV 86
Query: 71 YKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMEC-VLE 127
Y +A+N GE S D L+V F + P + G+ VMEC
Sbjct: 87 YVCVARNYLGEAVS--------HDASLEVAIL-RDDFRQNPSDVMVAVGEPAVMECQPPR 137
Query: 128 ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187
P P I W + ++D + +L I K D G Y C N +G
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGG--------KLMITYTRKSDAGKYVCVGTNMVG 189
Query: 188 ESNANIA-LNFQGGENGAGFAPSFIEKP 214
E + +A L PSF++
Sbjct: 190 ERESEVAELTVLE-------RPSFVKAA 210
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-HI 505
S+ P I E P + +SK + + CK P++ W K V+ D H
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 506 EQVKDVSMNF 515
+ S+ F
Sbjct: 62 MLLPSGSLFF 71
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 112 bits (280), Expect = 7e-28
Identities = 48/303 (15%), Positives = 92/303 (30%), Gaps = 36/303 (11%)
Query: 108 PKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P P + V+ C A ++W + + T+ L
Sbjct: 5 PPGPELVLNVSSTFVLTCSGSAP----VVWER------MSQEPPQEMAKAQDGTFSSVLT 54
Query: 167 INNPTKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT 223
+ N T D G Y C +S G + + + GF P+ E+ I E T
Sbjct: 55 LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP--DPTVGFLPNDAEELFIFLTE-IT 111
Query: 224 LIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
I + C+ + P+ V + + + + Q I + +Y
Sbjct: 112 EITIPCRVTD-PQLVVTLHEKK----GDVALPVPYDHQRGFSGIF---------EDRSYI 157
Query: 284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI 343
C E +++ + + + QG + + C V +
Sbjct: 158 CKTTIGDREVDSDAYYVYRLQVSS---INVSVNAVQTVVRQGEN-ITLMCIVIGNEVVNF 213
Query: 344 VWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
W + KE + + ++ + L + ED+G Y CN+ +
Sbjct: 214 EWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKA 273
Query: 403 LNI 405
+NI
Sbjct: 274 INI 276
Score = 94.4 bits (234), Expect = 1e-21
Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 31/271 (11%)
Query: 36 KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDG 95
+MS + + Q + +VLT+ N+ D+GEY + G + +
Sbjct: 32 RMSQEPPQEMAKAQDGTFS-SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY----- 85
Query: 96 KLKVPGGKAPRFPKKPTIH----QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM 151
+ VP P + + + C + P + + E G + +
Sbjct: 86 -IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLH------EKKGDVAL 137
Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
+ + +Y C E +++ ++ + + +
Sbjct: 138 P--------VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS----SINVS 185
Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC-E 270
G I + C +W K + +
Sbjct: 186 VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILH 245
Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
I DSGTY CNV + +NI
Sbjct: 246 IPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 73.6 bits (180), Expect = 1e-14
Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 6/141 (4%)
Query: 63 VQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVM 122
+ Y + E S + + + V T+ + G+ + +
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINV------SVNAVQTVVRQGENITL 201
Query: 123 ECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
C++ + + + W K L I + +D G Y CN
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNV 261
Query: 183 CNSIGESNANIALNFQGGENG 203
S+ + A+N E+G
Sbjct: 262 TESVNDHQDEKAINITVVESG 282
Score = 60.1 bits (145), Expect = 4e-10
Identities = 32/312 (10%), Positives = 74/312 (23%), Gaps = 80/312 (25%)
Query: 216 IIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
+ P + + C V W + + + QD T+ +
Sbjct: 3 VTPPGPELVLNVSSTFVLTCS----GSAPVVWERMSQEPPQEMAKA-----QDGTFSSVL 53
Query: 270 EITDPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
+T+ G D+G Y C + G L + + +P +
Sbjct: 54 TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP---DPTVGFLPNDAEELFIFLTEI 110
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
+ + C+V P + + ++ + ++ + Y
Sbjct: 111 TEITIPCRV-TDPQLVVTLHEKKGDVAL--PVPYDHQRGFSGIF-----------EDRSY 156
Query: 387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKY 446
C E++++ Y
Sbjct: 157 ICKTTIGDREVDSD--------------------------------------------AY 172
Query: 447 SVLTLSVVPVIREV-PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHI 505
V L V + V + + + + + C V+ + W + + V
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF 232
Query: 506 EQVKDVSMNFEL 517
+ L
Sbjct: 233 LLDMPYHIRSIL 244
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 110 bits (275), Expect = 3e-27
Identities = 48/314 (15%), Positives = 90/314 (28%), Gaps = 45/314 (14%)
Query: 104 APRFPKKPTIH--------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155
+P P P+IH + GD L + C+ + W T E K
Sbjct: 6 SPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENKKNE--- 58
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
G Y C+ N + S I + + A F+
Sbjct: 59 ---------WIQEKAEATRTGTYTCSNSNGLTSS---IYVFVRD------PAKLFLVGLP 100
Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
+ E + ++C + + + D + + + T
Sbjct: 101 LFGKE-DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITI-----KNVKR 154
Query: 276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV 335
RC + + G + ++ + P + G + C +
Sbjct: 155 AYHRLCVRCAAQRD-GTWLHSDKFTLKVREAIKA-IPVVSVPETSHLLKKGDTFTVVCTI 212
Query: 336 KAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKEDTGLYKCNIK 391
K +W + Q ++ N +GD + R L + R +D+G++ C
Sbjct: 213 KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYAN 272
Query: 392 NFHGELNANLTLNI 405
N G N TL +
Sbjct: 273 NTFGSANVTTTLKV 286
Score = 93.3 bits (231), Expect = 3e-21
Identities = 31/251 (12%), Positives = 62/251 (24%), Gaps = 28/251 (11%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
+ + + +G Y N S++ + + P ++
Sbjct: 58 EWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPA---------KLFLVGLPLFGKE 105
Query: 117 GDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
++ C L + K + + K+ + N
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA----GITI---KNVKRAYHR 158
Query: 176 GNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
RC A + L + P + G + C
Sbjct: 159 LCVRCAAQRDGTWLHSDKFTLKVREAIK---AIPVVSVPETSHLLKKGDTFTVVCTIKDV 215
Query: 235 PRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIIC---EITDPIGPDSGTYRCNVKNEF 290
W K + + +++K + D I+ DSG + C N F
Sbjct: 216 STSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTF 275
Query: 291 GESNANLNLNI 301
G +N L +
Sbjct: 276 GSANVTTTLKV 286
Score = 67.8 bits (165), Expect = 9e-13
Identities = 41/323 (12%), Positives = 83/323 (25%), Gaps = 80/323 (24%)
Query: 207 APSFIEKPRIIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260
+P P I P +S G + + C V+W K NE
Sbjct: 6 SPGEPSPPSIHPAQSELIVEAGDTLSLTCIDP----DFVRW-----------TFKTYFNE 50
Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
+ + +GTY C+ N S + + + DP
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS---IYVFVR-------DPAKLFLVGLP 100
Query: 321 RSEQGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
+ ++ C + + + +GK L N K I ++ R
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPN-----PKAGITIK-NVKR 154
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
+C + + + K+ ++ + I
Sbjct: 155 AYHRLCVRCAAQR-----------DGTWLHSDKFTLKVREAI------------------ 185
Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKED 498
+PV+ + K T + C + + + W+K +
Sbjct: 186 ------------KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI 233
Query: 499 NKHVVHIEQVKDVSMNFELWLGI 521
+ + D + + L I
Sbjct: 234 AQVKHNSWHRGDFNYERQETLTI 256
Score = 46.6 bits (110), Expect = 1e-05
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
+ ++ ++ + LTI + + DSG + A N G + T
Sbjct: 224 LKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283
Query: 88 LN 89
L
Sbjct: 284 LK 285
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 106 bits (266), Expect = 7e-27
Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 17/202 (8%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKAD-KLVKESSKIKIIVNEQDDTY 265
P G C+ + + ++ WF + + + + + +V DD+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
+ I + D+G Y+C V E G S A +N+ I F P + +
Sbjct: 63 TLT--IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFK 113
Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
G+ V+ C V + P I+W H+G+++ + + V L+++ +K D G
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-----LQIRGIKKTDEG 168
Query: 385 LYKCNIKNFHGELNANLTLNIE 406
Y+C + + +
Sbjct: 169 TYRCEGRILARGEINFKDIQVI 190
Score = 97.2 bits (242), Expect = 1e-23
Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 22/206 (10%)
Query: 103 KAPRFPKKPTIHQ--DGDLLVMECVLEASPM-PDIIWY--QGTKVIEDTGRIKMSKKSIG 157
+ + P+ + G+ C + DI W+ G K+ + RI + +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV----VW 56
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRI 216
D L I N DD G Y+C G S A + + F P
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTP 109
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ G + C + P + W + V ++ IV + Y I I
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--LSNNYLQIRGIKK--- 164
Query: 277 PDSGTYRCNVKNEFGESNANLNLNIE 302
D GTYRC + ++ +
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVI 190
Score = 81.4 bits (201), Expect = 5e-18
Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 20/142 (14%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSS-TVNLNFSEEDGKLKVPGGKAPRFPKKPTIH- 114
LTI N D+G YK + ++G S TVN+ + F PT
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-----------KLMFKNAPTPQE 111
Query: 115 -QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
++G+ V+ C + +S P IIW + + ++ S L+I K
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN------YLQIRGIKKT 165
Query: 174 DGGNYRCNACNSIGESNANIAL 195
D G YRC +
Sbjct: 166 DEGTYRCEGRILARGEINFKDI 187
Score = 72.2 bits (177), Expect = 7e-15
Identities = 28/198 (14%), Positives = 50/198 (25%), Gaps = 49/198 (24%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKY 369
P G+ C+V +I WF E ++ +V D
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
L + + +D G+YKC + G A + + I
Sbjct: 62 S-TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------------------- 97
Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
+ + P + + VI C V+S P++ W
Sbjct: 98 -----------------------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIW 134
Query: 489 MKEKNTVKEDNKHVVHIE 506
+ V +
Sbjct: 135 KHKGRDVILKKDVRFIVL 152
Score = 39.0 bits (91), Expect = 0.001
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
V + VP IS ++ C+V + ++W N+ + + D S
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 106 bits (266), Expect = 2e-26
Identities = 32/207 (15%), Positives = 59/207 (28%), Gaps = 37/207 (17%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-IIVNEQDDTY 265
P +G +++ C+ + P + +WFK +K + + + I
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVK-- 75
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGE---SNANLN------LNIEAEAEPEGDPPTFIE 316
D+G Y C V N F + L+ +
Sbjct: 76 ------------DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV 123
Query: 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK 376
+P + G +V++C P+P WF L + V
Sbjct: 124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL-------------YMVP 170
Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTL 403
E G Y C++ N ++
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVE 197
Score = 95.3 bits (237), Expect = 1e-22
Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%)
Query: 103 KAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
+ + P G + + C P W++ I S
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK------MNKEIPNGNTS----- 65
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIA---------LNFQGGENGAGFAPSFI 211
L N D G Y C N+ + + + + +
Sbjct: 66 ---ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
+P G+ + ++C P P +WFK + + +K + +
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM-------------V 169
Query: 272 TDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPP 312
GTY C+V N+ ++ I E G P
Sbjct: 170 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210
Score = 88.0 bits (218), Expect = 5e-20
Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 45/200 (22%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P+ ++ G+ V + C+ P + WF KE+ +
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE----------- 66
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
L +D G Y C + N + L++ +
Sbjct: 67 --LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIP-------------------- 104
Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
F++ I P + T+V++C + P W
Sbjct: 105 -----------ESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWF 153
Query: 490 KEKNTVKEDNKHVVHIEQVK 509
K + + + K + + V
Sbjct: 154 KNELPLTHETKKLYMVPYVD 173
Score = 88.0 bits (218), Expect = 5e-20
Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 21/146 (14%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSS-----TVNLNFSEEDGKLKVPGGKAPRFPKKP 111
L V D+G Y N S V + + +P
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 112 TIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN 169
T G LV++CV SP+P W++ + + +
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------------LYMVPY 171
Query: 170 PTKDDGGNYRCNACNSIGESNANIAL 195
+ G Y C+ N ++
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDSKKVE 197
Score = 48.7 bits (116), Expect = 1e-06
Identities = 9/63 (14%), Positives = 17/63 (26%)
Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
S + I P+ + + V + C+ W K + N +
Sbjct: 11 SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFN 70
Query: 507 QVK 509
V
Sbjct: 71 AVH 73
Score = 41.0 bits (96), Expect = 3e-04
Identities = 9/48 (18%), Positives = 12/48 (25%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA 104
+ + V G Y N S +E L P K
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKE 213
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 109 bits (274), Expect = 2e-26
Identities = 41/323 (12%), Positives = 88/323 (27%), Gaps = 52/323 (16%)
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR---- 164
KK + + GD + + C W ++ + K K
Sbjct: 1 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60
Query: 165 --------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
L I N +D Y C + E + F + +
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV------------FGLTANSDTHL 108
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ +S TL + P V+ + K + +
Sbjct: 109 LQGQSLTL---TLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQ------------- 152
Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEP-------EGDPPTFIEKPKIRSEQGGKLV 329
DSGT+ C V + +++ + A + EG+ F E+
Sbjct: 153 -DSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG 211
Query: 330 VMECKVKAKPMPEIV----WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ + + + ++ +++ + K H+ L P+ +G
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271
Query: 386 YKCNIKNFHGELNANLTLNIEMV 408
++ G+L+ + L +
Sbjct: 272 LTLALEAKTGKLHQEVNLVVMRA 294
Score = 103 bits (258), Expect = 2e-24
Identities = 45/388 (11%), Positives = 100/388 (25%), Gaps = 83/388 (21%)
Query: 17 TKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAK 76
+I N + S L +L + L IKN++ DS Y +
Sbjct: 33 QIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN-----FPLIIKNLKIEDSDTYICEVE 87
Query: 77 NKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-QDGDLLVMECVLEASPMPDII 135
++ E V + H G L + P +
Sbjct: 88 DQKEEVQLLV----------FGLT--------ANSDTHLLQGQSLTLTLESPPGSSPSVQ 129
Query: 136 WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
G+ L ++ D G + C + + I +
Sbjct: 130 CRSPRGKNIQGGKT---------------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174
Query: 196 NFQGGEN---------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK 246
+ G SF + + + + ++ + + + +K
Sbjct: 175 VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234
Query: 247 --LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
VK ++ + + + P SG ++ + G+ + +NL +
Sbjct: 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV--- 291
Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
+ C+V P+++ S +
Sbjct: 292 MRATQLQKN-----------------LTCEVWGPTSPKLML-------------SLKLEN 321
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
K K R + + G+++C + +
Sbjct: 322 KEAKVSKREKAVWVLNPEAGMWQCLLSD 349
Score = 50.2 bits (119), Expect = 1e-06
Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 40/177 (22%)
Query: 9 SYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS 68
+ E + + F + + L + +L L Q + S
Sbjct: 214 WWQAERASSSKSWITFDLK---NKEVSVKRVTQDPKLQMGKKLPLHL-TLPQALPQYAGS 269
Query: 69 GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA 128
G + + K G+ VNL ++ + + C +
Sbjct: 270 GNLTLALEAKTGKLHQEVNLV------VMRATQLQ----------------KNLTCEVWG 307
Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185
P ++ + + K+SK R + + G ++C +S
Sbjct: 308 PTSPKLML----SLKLENKEAKVSK----------REKAVWVLNPEAGMWQCLLSDS 350
Score = 49.0 bits (116), Expect = 2e-06
Identities = 25/198 (12%), Positives = 52/198 (26%), Gaps = 70/198 (35%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR------------- 372
G V + C K + W + + ++ S+ +T K + R
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSF-LTKGPSKLNDRADSRRSLWDQGNF 67
Query: 373 -LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTR 431
L +K+ + ED+ Y C V K V
Sbjct: 68 PLIIKNLKIEDSDTYIC-------------------------EVEDQKEEV--------- 93
Query: 432 SYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKE 491
L V + + + +++ + + PSV
Sbjct: 94 ------------------QLLVFGLT--ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSP 133
Query: 492 KNTVKEDNKHVVHIEQVK 509
+ + K + + Q++
Sbjct: 134 RGKNIQGGK-TLSVSQLE 150
Score = 33.6 bits (76), Expect = 0.16
Identities = 10/70 (14%), Positives = 20/70 (28%)
Query: 462 KVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGI 521
KVV K TV + C W N+ + ++ + +
Sbjct: 2 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61
Query: 522 VEKRGPSIKI 531
++ + I
Sbjct: 62 WDQGNFPLII 71
Score = 28.2 bits (62), Expect = 7.3
Identities = 3/32 (9%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNG-EGSSTVNL 88
V ++G ++ + + S + +
Sbjct: 330 EKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 108 bits (270), Expect = 4e-26
Identities = 44/267 (16%), Positives = 77/267 (28%), Gaps = 38/267 (14%)
Query: 58 LTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-- 114
+ + ++ D G Y A G S +NL + P
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTV------MAKPTNWIEGTQAVLRAKKG 147
Query: 115 QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
QD +LV C P + W K + I+ ++ T + R + +
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV---TVISRYRLVPSREA 204
Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCS 232
+ C + ++ LN Q + P IE +++ CK
Sbjct: 205 HQQSLACIVNYHMDRFKESLTLNVQ-------YEPEVTIEGFDGNWYLQRMDVKLTCKAD 257
Query: 233 AKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
A P E W + + + + Q+ T I +GTY C N G
Sbjct: 258 ANPPATEYHWTTLNGSLPKGVEA------QNRTLFFKGPINYS---LAGTYICEATNPIG 308
Query: 292 ESNANLNLNIEAEAEPEGDPPTFIEKP 318
+ + +NI +
Sbjct: 309 TRSGQVEVNIT-------EAAALEHHH 328
Score = 99.8 bits (248), Expect = 3e-23
Identities = 52/341 (15%), Positives = 88/341 (25%), Gaps = 63/341 (18%)
Query: 101 GGKAPRFPKKPTIHQD------GDLLVMECVLEASPMPD----IIWY------------- 137
G + R P + D G +V+ C + W
Sbjct: 7 GQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIY 66
Query: 138 ---QGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN-AN 192
G V+ R++ + S T + ++ +D G Y C + +
Sbjct: 67 NPSMGVSVLAPYRERVEFLRPSFTDGT----IRLSRLELEDEGVYICEFATFPTGNRESQ 122
Query: 193 IALNFQGGENGAGFAPSFIEKP-----RIIPNESGTLIQMKCK-CSAKPRPEVKWFKADK 246
+ L P+ + R + ++ C + KP V W K
Sbjct: 123 LNLTVMA-------KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK 175
Query: 247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAE 306
E +I+ + + C V +L LN++ E
Sbjct: 176 GEAEYQEIRNPNGTVTVISRYR--LVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE-- 231
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLK 365
P IE V + CK A P E W L +
Sbjct: 232 ----PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ------ 281
Query: 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ + G Y C N G + + +NI
Sbjct: 282 NRTLFFKGPIN---YSLAGTYICEATNPIGTRSGQVEVNIT 319
Score = 70.9 bits (173), Expect = 1e-13
Identities = 18/177 (10%), Positives = 40/177 (22%), Gaps = 32/177 (18%)
Query: 42 SSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
+ + ++ + +++ I ++ LN
Sbjct: 180 YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY--------- 230
Query: 102 GKAPRF---PKKPTIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIG 157
P + + + C +A+P + W + +
Sbjct: 231 --EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ------- 281
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKP 214
T G Y C A N IG + + +N A +
Sbjct: 282 NRTLFF---KGPINYSLAGTYICEATNPIGTRSGQVEVNIT-------EAAALEHHH 328
Score = 40.5 bits (94), Expect = 0.001
Identities = 20/123 (16%), Positives = 31/123 (25%), Gaps = 21/123 (17%)
Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE----IVWFHEGKELQQTDRI 358
+ DP ++ G VV+ C + W +Q I
Sbjct: 6 GGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAI 65
Query: 359 SWN-------------VTLKGDKYHI-RLEVKDPRKEDTGLYKCNIKNFHG---ELNANL 401
V + + + ED G+Y C F E NL
Sbjct: 66 YNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125
Query: 402 TLN 404
T+
Sbjct: 126 TVM 128
Score = 32.8 bits (74), Expect = 0.28
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEP----SVTWMKEKNTVKED 498
+ +V + VV+ C + VTW K N K++
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQN 62
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 104 bits (260), Expect = 4e-26
Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 25/203 (12%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+ P + G +++ C P+++W K +V+ ++ I V+EQ
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
+ + D+G Y C V++ + + L +E P F +PK +
Sbjct: 62 LS--LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-------VPFFTVEPKDLAVPP 112
Query: 326 GKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
+ C+ P P IVW+ ++ + +
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------------SPSVLNVTGVTQST 159
Query: 385 LYKCNIKNFHGELNAN-LTLNIE 406
++ C N G ++ T++++
Sbjct: 160 MFSCEAHNLKGLASSRTATVHLQ 182
Score = 98.3 bits (245), Expect = 4e-24
Identities = 29/204 (14%), Positives = 72/204 (35%), Gaps = 28/204 (13%)
Query: 104 APRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
+ P G + + C +E PDI W + V+++ ++ + + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYI---PVSEQHW 58
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
+ L + + + D G Y C + + + L +G P F +P+ +
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-------VPFFTVEPKDLAVP 111
Query: 221 SGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
Q+ C+ P P + W++ + + ++ +T S
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP----------APSPSVL-NVTGV--TQS 158
Query: 280 GTYRCNVKNEFGESNAN-LNLNIE 302
+ C N G +++ ++++
Sbjct: 159 TMFSCEAHNLKGLASSRTATVHLQ 182
Score = 84.1 bits (208), Expect = 5e-19
Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 50/203 (24%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
+ P + G+ V + C V+ P+I W +G +Q D++ + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY--IPVSEQHWI 59
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
L +K + D G Y C +++
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGET---------------------------------- 85
Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWM 489
+ + LT+ VP PK + + + C+ + EP ++ W
Sbjct: 86 -----------EISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW 134
Query: 490 KEKNTV--KEDNKHVVHIEQVKD 510
+ + + V+++ V
Sbjct: 135 RGTTKIGGPAPSPSVLNVTGVTQ 157
Score = 80.2 bits (198), Expect = 9e-18
Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 31/170 (18%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G++++ D+L + + ++ L++K+V++SD+G Y ++ S
Sbjct: 37 VKDGAVVQNLDQLYIPVSEQH----WIGFLSLKSVERSDAGRYWCQVEDGGETEISQP-- 90
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPD-IIWYQGTKVIED 145
L V G P F +P + C P P I+W++GT I
Sbjct: 91 ------VWLTVEG--VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG 142
Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
+N + C A N G +++ A
Sbjct: 143 PAP--------------SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT 178
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
+ P +T+S+ + V + C V M EP + W+K+ V+ ++ + + + +
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 104 bits (260), Expect = 7e-26
Identities = 34/208 (16%), Positives = 60/208 (28%), Gaps = 13/208 (6%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+ + + +++ C S P V+W + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 267 IICEITDPIGP----DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
D+GTY C V E G S + + + PP+ S
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV-----PPSKPTVNIPSS 118
Query: 323 EQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDP 378
G V+ C P E WF +G + + + + + L
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIE 406
DTG Y C +N +G + + +E
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 97.3 bits (242), Expect = 2e-23
Identities = 31/211 (14%), Positives = 55/211 (26%), Gaps = 24/211 (11%)
Query: 110 KPTIHQ--------DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
T+H + + + + C P + W + +D
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 162 LLR---LEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSFIEKPRI 216
+ + T++D G Y C G + L PS
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL-------VPPSKPTVNIP 116
Query: 217 IPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC---EIT 272
G + C P E WFK ++ + K +
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFD 176
Query: 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
D+G Y C +N +G + + +EA
Sbjct: 177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 90.0 bits (223), Expect = 8e-21
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 14/149 (9%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQ 115
+T K+V + D+G Y + + G V + KL V P P +
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKV-------KLIVLV--PPSKPTVNIPSSAT 120
Query: 116 DGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGR--IKMSKKSIGKDTYLLRLEINNPTK 172
G+ V+ C + SP + W++ V+ + S S + L + +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180
Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGE 201
D G Y C A N G + A+ + E
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
Score = 66.1 bits (161), Expect = 1e-12
Identities = 24/196 (12%), Positives = 44/196 (22%), Gaps = 49/196 (25%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
T V + C P + W + + + + +T +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 371 IR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
+ K +EDTG Y C + G + +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK---------------------- 101
Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPS 485
L + V P V + + V+ C
Sbjct: 102 ----------------------LIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSE 139
Query: 486 VTWMKEKNTVKEDNKH 501
TW K+ + + K
Sbjct: 140 YTWFKDGIVMPTNPKS 155
Score = 44.2 bits (104), Expect = 3e-05
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYL-AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
+ G ++ + + + L L + SD+GEY A+N G ++
Sbjct: 143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNA 202
Query: 88 LN 89
+
Sbjct: 203 VR 204
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 107 bits (267), Expect = 1e-25
Identities = 27/201 (13%), Positives = 67/201 (33%), Gaps = 19/201 (9%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P+ + + G + ++C+ + + W + +++S+ + +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTE--LEQSATVMKSGGLPSLGLTL 216
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK 327
+T + + C +N+ G + ++ +N +F ++ +
Sbjct: 217 A-NVTSDL--NRKNVTCWAENDVGRAEVSVQVN-----------VSFPASVQLHTAVEMH 262
Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKEDTG 384
+ V +P P + W G L +T I +R L + P + G
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322
Query: 385 LYKCNIKNFHGELNANLTLNI 405
Y N G+ +A++
Sbjct: 323 NYTLLAANPFGQASASIMAAF 343
Score = 97.5 bits (242), Expect = 2e-22
Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 20/188 (10%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
GD +++ C +E + W T + K L N + +
Sbjct: 173 GDDVLLRCQVEGRGLEQAGWILTELEQSAT----VMKSGGLPSLGLTL--ANVTSDLNRK 226
Query: 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
N C A N +G + ++ +N SF ++ + +P
Sbjct: 227 NVTCWAENDVGRAEVSVQVN-----------VSFPASVQLHTAVEMHHWCIPFSVDGQPA 275
Query: 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC---EITDPIGPDSGTYRCNVKNEFGES 293
P ++W ++ E+S I E + + P ++G Y N FG++
Sbjct: 276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335
Query: 294 NANLNLNI 301
+A++
Sbjct: 336 SASIMAAF 343
Score = 89.4 bits (221), Expect = 1e-19
Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 19/164 (11%)
Query: 39 DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLK 98
+ S V L L + + A+N G +V +N
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN--------- 246
Query: 99 VPGGKAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
FP + + ++ P P + W V+ +T I
Sbjct: 247 ------VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP 300
Query: 157 GKDTYLLR--LEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+ + L +N PT + GNY A N G+++A+I F
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Score = 51.7 bits (123), Expect = 3e-07
Identities = 23/213 (10%), Positives = 46/213 (21%), Gaps = 55/213 (25%)
Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
PT + S G V++ C+V+ + + + W E T
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM---KSGGLPSLG 213
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
V + C +N G ++ +N
Sbjct: 214 LTLANVT--SDLNRKNVTCWAENDVGRAEVSVQVN------------------------- 246
Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
++ T + I V PS+ W+
Sbjct: 247 -------------------------VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWL 281
Query: 490 KEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIV 522
+ + E + + L +
Sbjct: 282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 314
Score = 46.3 bits (109), Expect = 2e-05
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQS-RLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
GS+L + + + ++ + L + ++G Y ++A N G+ S+++
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 340
Query: 88 LNFSE 92
F +
Sbjct: 341 AAFMD 345
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 102 bits (256), Expect = 2e-25
Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 14/208 (6%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
S + I++ C S P V+W +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 268 IC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
+ D+G Y C V E G++ +++++ PP+ S
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV-----PPSKPTISVPSSV 116
Query: 324 QGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTD----RISWNVTLKGDKYHIRLEVKDP 378
G V+ C P E WF +G + D R N + D L
Sbjct: 117 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIE 406
D+G Y C +N +G + +++
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 93.1 bits (231), Expect = 6e-22
Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 25/212 (11%)
Query: 110 KPTIHQ--------DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
K +++ + + + + C P + W + D
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 162 LLR---LEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSFIEKPRI 216
+ ++ T+ D G Y C G+ +I L PS
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL-------VPPSKPTISVP 113
Query: 217 IPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC----EI 271
G + C P E WFK + + K
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 272 TDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
DSG Y C +N +G + + +++A
Sbjct: 174 DPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 205
Score = 85.8 bits (212), Expect = 2e-19
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 15/146 (10%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIH 114
+T +V + D+GEY + + G+ V++ L V P P +
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI-------HLTVLV--PPSKPTISVPSSV 116
Query: 115 QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR---LEINNP 170
G+ V+ C + SP + W++ + K T + L +
Sbjct: 117 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176
Query: 171 TKDDGGNYRCNACNSIGESNANIALN 196
T D G Y C A N G + + A +
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 68.1 bits (166), Expect = 3e-13
Identities = 17/208 (8%), Positives = 47/208 (22%), Gaps = 49/208 (23%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
+ + + + C P + W + +T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 372 R----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
+ ++D G Y C + G+ ++++
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH----------------------- 98
Query: 428 VKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPSV 486
LT+ V P + +++ V+ C
Sbjct: 99 ---------------------LTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137
Query: 487 TWMKEKNTVKEDNKHVVHIEQVKDVSMN 514
+W K+ ++ + +++
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTID 165
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 100 bits (251), Expect = 1e-24
Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 17/212 (8%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE--VKWFKADKLVKESSKIKII 257
G P E+ + + G + + C + +W + V + +
Sbjct: 1 GPGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF 60
Query: 258 VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN---LNLNIEAEAEPEGDPPTF 314
V++ + I + D G Y C V + + + L E + P
Sbjct: 61 VSQTNGNLYI----ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116
Query: 315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLE 374
+ + K G+ V +EC P+P+I W + + T IS L+
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS-----TSGA---VLK 168
Query: 375 VKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ + + ED G+Y+C +N G+ + ++
Sbjct: 169 IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 92.3 bits (229), Expect = 1e-21
Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 28/210 (13%)
Query: 105 PRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWY-----QGTKVIEDTGRIKMSKKSI 156
P P++ + + G +V+ C D+ + + D R
Sbjct: 9 PFPPEERPEVRVKE-GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG- 66
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA---LNFQGGENGAGFAPSFIEK 213
L I N D GNY C + + L + + +
Sbjct: 67 -------NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ 119
Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD 273
+ + G + ++C P P+++W K + + +++I I I
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST-----SGAVLKIFNIQL 174
Query: 274 PIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
D G Y C +N G+ + ++A
Sbjct: 175 E---DEGIYECEAENIRGKDKHQARIYVQA 201
Score = 91.9 bits (228), Expect = 2e-21
Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 14/167 (8%)
Query: 37 MSDRLSSTLVQDQSRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED 94
+ + + D+ R L I NV+ SD G Y + + S
Sbjct: 45 LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKF-IPLIP 103
Query: 95 GKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS 152
+ + G + +EC +P+PDI W + + + T I S
Sbjct: 104 IPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS 163
Query: 153 KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
L+I N +D G Y C A N G+ + Q
Sbjct: 164 GAV---------LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 54.9 bits (132), Expect = 8e-09
Identities = 27/206 (13%), Positives = 48/206 (23%), Gaps = 47/206 (22%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV--WFHEGKELQQTDRISWNVTLKGDK 368
P E+ + GK +V+ C ++ W + T V+
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
L + + D G Y C + +
Sbjct: 68 ----LYIANVEASDKGNYSCFVSSPSIT-------------------------------K 92
Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
S P+ T I K V + V +EC + P + W
Sbjct: 93 SVFSKFIPLIPIPER-----TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRW 147
Query: 489 MKEKNTVKEDNKHVV-----HIEQVK 509
K + + I ++
Sbjct: 148 RKVLEPMPSTAEISTSGAVLKIFNIQ 173
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 99.6 bits (248), Expect = 2e-24
Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 31/210 (14%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
F+ P I G ++C+ + PEV W + ++++ + + V +D +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 267 IICE-----ITDPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKP 318
IT D+G Y+C V + L P F+E+P
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG---------LPYFLEEP 113
Query: 319 KIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
+ R+ + C+ + P P +++W + L +L
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSL-----------HV 162
Query: 378 PRKEDTGLYKCNIKNFHGE-LNANLTLNIE 406
P T + C N G + T+ +
Sbjct: 163 PGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 84.2 bits (208), Expect = 5e-19
Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 37/206 (17%)
Query: 105 PRFPKKP--TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
F P G + C L+ P++ W + +++E + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 162 LL----RLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPRI 216
+L I + D G Y+C + + +G P F+E+P
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-------LPYFLEEPED 115
Query: 217 IPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIK-----IIVNEQDDTYEIICE 270
+ T + C+ P P ++ W + + + +
Sbjct: 116 RTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--------- 166
Query: 271 ITDPIGPDSGTYRCNVKNEFGESNAN 296
+ ++ C N G + +
Sbjct: 167 -------KTSSFSCEAHNAKGVTTSR 185
Score = 79.2 bits (195), Expect = 3e-17
Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 56/212 (26%)
Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
+ F+ P + G + C+++ + PE+ W +G+ L+ D V L D+
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 369 YHI-----RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVG 423
+L + + DTG Y+C + H
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQT--------------------------- 93
Query: 424 KMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE 483
++ + + L +P E P+ T++ + C+ E
Sbjct: 94 ----FVSQPGY--------------VGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPE 135
Query: 484 P-SVTWMKEKNTVKEDNKH----VVHIEQVKD 510
P + W+++ + H +H+ +
Sbjct: 136 PVDLLWLQDAVPLATAPGHGPQRSLHVPGLNK 167
Score = 78.0 bits (192), Expect = 7e-17
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 28/173 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLA---VLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
G +L+++D + + + L I ++Q SD+G+Y+ + + S
Sbjct: 38 LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQ 97
Query: 86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMP-DIIWYQGTKV 142
G + + G P F ++P + C + P P D++W Q
Sbjct: 98 P--------GYVGLEG--LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP 147
Query: 143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
+ L + ++ C A N+ G + + A
Sbjct: 148 LATAPGHGPQ----------RSLHVPGLN--KTSSFSCEAHNAKGVTTSRTAT 188
Score = 39.5 bits (92), Expect = 0.001
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSM 513
P +T ++ T + C++ P V W+++ ++ + + +D
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 514 NFE 516
++
Sbjct: 63 DWI 65
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 99.7 bits (248), Expect = 9e-24
Identities = 39/311 (12%), Positives = 78/311 (25%), Gaps = 63/311 (20%)
Query: 108 PKKPTIH-----QDGDLLVMECVLEA---SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
P + + + C L+ + G + + T
Sbjct: 4 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT------YGNDS 57
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSF-IEKPRIIP 218
+ C + + AP+ + KP +
Sbjct: 58 FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY-----SFPAPNVILTKPEVSE 112
Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
T+ KC A PR +V + + +++ + +D+ C T
Sbjct: 113 GTEVTV-----KCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSAT----- 162
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG--GKLVVMECKV 335
V + N L + P E+ + C+
Sbjct: 163 ------LEVAGQLIHKNQTRELRVLY-------GPRLDERDCPGNWTWPENSQQTPMCQA 209
Query: 336 KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
P+PE+ +G VT ++ G Y C ++ G
Sbjct: 210 WGNPLPELKCLKDGTFPLPIGESV-TVT----------------RDLEGTYLCRARSTQG 252
Query: 396 ELNANLTLNIE 406
E+ +T+N+
Sbjct: 253 EVTREVTVNVL 263
Score = 60.8 bits (147), Expect = 2e-10
Identities = 35/292 (11%), Positives = 70/292 (23%), Gaps = 75/292 (25%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P + PR++ E T + C P E + L ++ V +D++
Sbjct: 6 PPQLVSPRVL--EVDTQGTVVCSLDGLFPVSEAQV----HLALGDQRLNPTVTYGNDSFS 59
Query: 267 IICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIEAEAEP--EGDPPTFIEKPKIRSE 323
++ + C V + I + P P E
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------- 112
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
G V ++C+ P G Q + L +K +++
Sbjct: 113 --GTEVTVKCEAH----PRAKVTLNGVPAQPLGPRAQ------------LLLKATPEDNG 154
Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
+ C+ V + K ++ P+
Sbjct: 155 RSFSCSATL----------------------------EVAGQLIHKNQTRELRVLYGPRL 186
Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTV 495
R+ P T + C+ P + +K+
Sbjct: 187 ------------DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226
Score = 57.0 bits (137), Expect = 3e-09
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 27/145 (18%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKV---PGGKAPRFPKKPTIH 114
L +K + + + A + N +L+V P P T
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR-----ELRVLYGPRLDERDCPGNWTW- 197
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ C +P+P++ + G E T+D
Sbjct: 198 PENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------------ESVTVTRDL 239
Query: 175 GGNYRCNACNSIGESNANIALNFQG 199
G Y C A ++ GE + +N
Sbjct: 240 EGTYLCRARSTQGEVTREVTVNVLS 264
Score = 36.2 bits (83), Expect = 0.021
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L + V + G Y A++ GE + V +N
Sbjct: 227 LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 261
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 92.7 bits (230), Expect = 9e-23
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKLVKESS-----KIKIIV 258
FIEKP+ + G I K A+ +P +KWFK + S ++K
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF 314
Y +I +G YRC V + + + +L + + +
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSG 122
Score = 82.0 bits (202), Expect = 6e-19
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVT 363
FIEKP+ + + G+ + KVKA+ + P I WF GK + + ++
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFK-GKWMDLASKAGKHLQ 61
Query: 364 LK------GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
LK Y +++ + G Y+C + + + L +
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
Score = 64.2 bits (156), Expect = 1e-12
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 100 PGGKAPRFPKKPTIH--QDGDLLVMECVLEASPM---PDIIWYQGTKV---IEDTGRIKM 151
G F +KP + G+ + ++A + P I W++G + + +++
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 152 SKK-SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+ Y ++I + GNYRC + + L
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
Score = 50.0 bits (119), Expect = 1e-07
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 36 KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEE 93
K L ++ Y + I + + +G Y+ K+ S + +L E
Sbjct: 55 KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112
Score = 38.0 bits (88), Expect = 0.001
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVM---SMYEPSVTWMKEKNT--VKEDNKHVVHIE 506
S + E P+ T+ + + KV + +P++ W K K + KH+ E
Sbjct: 5 SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 507 QVKDVSMNFELWLGIVE 523
+ S + + I++
Sbjct: 65 TFERHSRVYTFEMQIIK 81
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 91.2 bits (227), Expect = 2e-22
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
G PP P S GK++ + C +P PE+ W G+++ ++ +++ D
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
L + D +K+D GLY ++ N G +A + ++I +
Sbjct: 63 T--TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 89.3 bits (222), Expect = 8e-22
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
G G P P I + G ++ + C + +P PEV W + + + + + D
Sbjct: 1 GPGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
D +I I D D G Y ++ NEFG +A +N++I +
Sbjct: 61 DLTTLI--IMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 74.3 bits (183), Expect = 2e-16
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
G P+ P+ +G +L + C P P++ W G + I + + ++
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
T L I + K DGG Y + N G +A + ++ +
Sbjct: 63 T---TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 51.2 bits (123), Expect = 2e-08
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
P I +P ++I + K + + C P VTW + + HIE D++
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Score = 48.5 bits (116), Expect = 2e-07
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G + ++ + L L I +VQK D G Y + N+ G S+TVN+
Sbjct: 40 SCGGRKIHSQEQGRFHIENTDD----LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
Query: 89 N 89
+
Sbjct: 96 H 96
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 91.5 bits (227), Expect = 6e-22
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
SG+ + N N + L AE +P P F + G +CKV+
Sbjct: 9 ASGSSPTSPINANKVENEDAFLEEVAEEKPH-VKPYFTKTILDMEVVEGSAARFDCKVEG 67
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397
P PE++WF + ++++ + + L + + +D Y C N GE
Sbjct: 68 YPDPEVMWFKDDNPVKESRHFQ--IDYDEEGNC-SLTISEVCGDDDAKYTCKAVNSLGEA 124
Query: 398 NANLTLNIE 406
L +E
Sbjct: 125 TCTAELLVE 133
Score = 83.4 bits (206), Expect = 4e-19
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
Query: 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230
+ G+ + N+ N + L + E P F + + G+ + CK
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLE-EVAEEKPHVKPYFTKTILDMEVVEGSAARFDCK 64
Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC--EITDPIGPDSGTYRCNVKN 288
P PEV WFK D VKES +I +E+ C I++ G D Y C N
Sbjct: 65 VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG-----NCSLTISEVCGDDDAKYTCKAVN 119
Query: 289 EFGESNANLNLNIEA---EAEPEGDPPTFIEKPK 319
GE+ L +E E E EG+ E+ +
Sbjct: 120 SLGEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153
Score = 79.5 bits (196), Expect = 9e-18
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 60 IKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDG 117
+ + S S I NK + + EE + K P F K +G
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFL-----EEVAEEKPH--VKPYFTKTILDMEVVEG 56
Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
+C +E P P+++W++ ++++ ++ G + L I+ DD
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS----LTISEVCGDDDAK 112
Query: 178 YRCNACNSIGESNANIALNFQG 199
Y C A NS+GE+ L +
Sbjct: 113 YTCKAVNSLGEATCTAELLVET 134
Score = 43.7 bits (103), Expect = 3e-05
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ + +K S + D+ LTI V D +Y A N GE + T L
Sbjct: 76 FKDDNPVKESRHF--QIDYDEEGNC---SLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Query: 89 N 89
Sbjct: 131 L 131
Score = 40.2 bits (94), Expect = 4e-04
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
++ + V P + + + + +CKV +P V W K+ N VKE +
Sbjct: 31 EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 90
Query: 504 HIEQ 507
++
Sbjct: 91 DYDE 94
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 94.2 bits (234), Expect = 8e-22
Identities = 46/303 (15%), Positives = 92/303 (30%), Gaps = 55/303 (18%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P ++ Q + + + C + P W+ + +
Sbjct: 8 PPWVSVFQ-EETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYR 51
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
I + + +D G YRC S + I L ++ + E L
Sbjct: 52 ITSASVNDSGEYRCQRGLS--GRSDPIQLEIH-------RGWLLLQVSSRVFTEGEPLA- 101
Query: 227 MKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
++C K V +++ K K + I +GTY C+
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFH--------WNSNLTI----LKTNISHNGTYHCS 149
Query: 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVW 345
+ ++A +++ ++ P +G LV + C+ K +
Sbjct: 150 GMGKHRYTSAGISVTVKELFP----APVLNASVTSPLLEGN-LVTLSCETKLLLQRPGLQ 204
Query: 346 FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN---ANLT 402
+ + + TL+G ++ R+ED+GLY C G + L
Sbjct: 205 LYFSFYMG-------SKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELE 257
Query: 403 LNI 405
L +
Sbjct: 258 LQV 260
Score = 90.7 bits (225), Expect = 1e-20
Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 50/241 (20%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
I + +DSGEY+ + S + L L+V + +G
Sbjct: 50 YRITSASVNDSGEYR--CQRGLSGRSDPIQLEIHRGWLLLQVS----------SRVFTEG 97
Query: 118 DLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
+ L + C + ++++Y+ K K ++ L I G
Sbjct: 98 EPLALRCHAWKDKLVYNVLYYRNGKAF----------KFFHWNS---NLTILKTNISHNG 144
Query: 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
Y C+ ++A I++ + F + P G L+ + C+ +
Sbjct: 145 TYHCSGMGKHRYTSAGISVTVK-----ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQ 199
Query: 237 PEV-----KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEF 290
++ K ++ + Y+I DSG Y C E
Sbjct: 200 RPGLQLYFSFYMGSKTLRGRN--------TSSEYQI-----LTARREDSGLYWCEAATED 246
Query: 291 G 291
G
Sbjct: 247 G 247
Score = 69.9 bits (171), Expect = 1e-13
Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 38/201 (18%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
+P + + + C+ P +WF + S+ I + +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVN--- 58
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
DSG YRC L ++ + + R G
Sbjct: 59 -----------DSGEYRCQRGLSGRSDPIQLEIH----------RGWLLLQVSSRVFTEG 97
Query: 327 KLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ + + C K + ++++ GK + I G
Sbjct: 98 EPLALRCHAWKDKLVYNVLYYRNGKAFKFFH--------WNSNLTIL----KTNISHNGT 145
Query: 386 YKCNIKNFHGELNANLTLNIE 406
Y C+ H +A +++ ++
Sbjct: 146 YHCSGMGKHRYTSAGISVTVK 166
Score = 35.3 bits (81), Expect = 0.035
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNKHVVHIEQVK 509
VI P V++ +++TV + C+V+ + S W + I
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS-YRITSAS 56
Score = 34.5 bits (79), Expect = 0.061
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEG---SSTVNLN 89
I ++ DSG Y A ++G S + L
Sbjct: 225 YQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 89.0 bits (221), Expect = 1e-21
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 301 IEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW 360
++A + +G PP F+ P+ G ++C V +P P +VW G++L ++R+S
Sbjct: 3 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS- 61
Query: 361 NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
G ++ L + D G+Y C +N GE A + +
Sbjct: 62 -FPADGAEH--GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 76.7 bits (189), Expect = 2e-17
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
G P F+ PR + SG ++KC +P P V W K + + S ++ + +
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
+T + D+G Y C +N GE+ A + +
Sbjct: 70 GL----LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 73.6 bits (181), Expect = 3e-16
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 102 GKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
G P F + P G ++CV+ P P ++W +G + + + R+ D
Sbjct: 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA-----D 65
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L + D G Y C A N+ GE+ A A+
Sbjct: 66 GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 46.2 bits (110), Expect = 1e-06
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G L S+RL + D + L + +D+G Y A+N GE + +
Sbjct: 48 EKGGQQLAASERL--SFPADGAE----HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
Query: 89 N 89
Sbjct: 102 T 102
Score = 40.4 bits (95), Expect = 1e-04
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
P P+ V + ++C V+ P V W K + + +
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 66
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 88.6 bits (220), Expect = 2e-21
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 302 EAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361
+ + KP+ + G+ C +P+P + W +G+ L + R
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQ-- 62
Query: 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
VT K E+ + D G Y ++N G+ A TL I+
Sbjct: 63 VTTTKYKS--TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 78.2 bits (193), Expect = 9e-18
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
A + KPR + G + C +P P V W + +++ S++ ++ +
Sbjct: 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 264 TYEIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIE 302
T+EI + D G Y V+N G+ A L I+
Sbjct: 71 TFEI-----SSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 73.2 bits (180), Expect = 4e-16
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
A R KP +G+ C + P+P + W + +V+ + R +++ Y
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKY 68
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
EI++ D GNY NS G+ A L Q
Sbjct: 69 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 50.4 bits (121), Expect = 3e-08
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
KG +L S R T + +S I +VQ SD G Y V+ +N G+ + L
Sbjct: 49 LRKGQVLSTSARHQVTTTKYKS------TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Query: 89 N 89
Sbjct: 103 T 103
Score = 42.7 bits (101), Expect = 2e-05
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
+ ++ I P+ +T+ + ++ C P+VTW+++ + +H
Sbjct: 2 HHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61
Query: 502 VVHIEQVKDVS 512
+ K S
Sbjct: 62 --QVTTTKYKS 70
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 88.9 bits (221), Expect = 2e-21
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
P I+ P+ + + G+ V + KV W K++Q+++ + +
Sbjct: 1 GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH----MKV 56
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ + +L + R+E G Y ++N G A + L +
Sbjct: 57 ENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
Score = 83.5 bits (207), Expect = 1e-19
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P I+ P +G +++ K + W K K ++ES +K+ ++ +
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE--NSENGSK 64
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
+ I G Y V+N+ G A +NL + + +P P+
Sbjct: 65 LT--ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPS 109
Score = 71.6 bits (176), Expect = 2e-15
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 100 PGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
G P+ + P + G+ + + + + W + K I+++ +K+
Sbjct: 3 SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE----- 57
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+L I ++ G Y N +G A + L
Sbjct: 58 NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Score = 52.7 bits (127), Expect = 7e-09
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
++ S+ + ++ S+L TI ++ G Y ++ +NK G + VNL
Sbjct: 42 MKFRKQIQESEHMKVENSENGSKL------TILAARQEHCGCYTLLVENKLGSRQAQVNL 95
Query: 89 N 89
Sbjct: 96 T 96
Score = 44.2 bits (105), Expect = 7e-06
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
P I + P+ + ++V + KV + TWMK + ++E + +E ++ S
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH--MKVENSENGS 63
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 87.4 bits (217), Expect = 4e-21
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
G P F++ P + Q GKL M+CKV P P++ W +GK ++ + ++ +
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHK--MLVREN 63
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
H L ++ D G+Y C N G+ + +L L +
Sbjct: 64 GVH-SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
Score = 85.1 bits (211), Expect = 3e-20
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIV 258
G +GF P F++ P + + G L +M CK S P P++ W K V+ S K++V
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV 60
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
E II +T D+G Y C N G+++ +L L + E P +
Sbjct: 61 RENGVHSLIIEPVTS---RDAGIYTCIATNRAGQNSFSLELVVA---AKESGPSS 109
Score = 79.3 bits (196), Expect = 3e-18
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
G P F + P Q+G L M+C + P PD+ W K + KM + G
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENG 203
+ L I T D G Y C A N G+++ ++ L E+G
Sbjct: 67 S----LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 50.4 bits (121), Expect = 5e-08
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G ++ + ++ + L I+ V D+G Y IA N+ G+ S ++ L
Sbjct: 44 QLDGKPVRPDSAHKMLVRENG-----VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
Query: 89 NFSEEDGK 96
+ ++
Sbjct: 99 VVAAKESG 106
Score = 42.7 bits (101), Expect = 2e-05
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
P + P +T+ + K ++CKV + P ++W + V+ D+ H + + +
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE 62
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 87.6 bits (217), Expect = 5e-21
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP + + + E V+ P P + W H G+ L+++ I +G+
Sbjct: 8 PPRVVSLEEPELRLEHCI---EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L P + G Y KN G N + +
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
Score = 81.4 bits (201), Expect = 8e-19
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 214 PRIIPNESGTLIQ---MKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
PR++ E L ++ P P + W + ++ES I + ++ + E
Sbjct: 9 PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 68
Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNI-EAEAEPEGDPPT 313
P ++G Y KN G +N +N + + + PT
Sbjct: 69 FNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPT 112
Score = 73.3 bits (180), Expect = 5e-16
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 104 APRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
PR ++P + + +E V+ +P P + W + + ++ I + G +
Sbjct: 8 PPRVVSLEEPELRLEH---CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG-EIS 63
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
L N PT + GNY A N +G +N I +F
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101
Score = 60.2 bits (146), Expect = 2e-11
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
H G L+ S + Q+ L ++G Y +IAKN G + T+N
Sbjct: 40 LHNGQPLRESKIIHVEYYQEGE--ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
Query: 89 NFSEEDGKLKVPGGKAPRFPKKP 111
+F LK P P P
Sbjct: 98 HF------LKEPFPVDEVSPTPP 114
Score = 35.2 bits (81), Expect = 0.010
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQV 508
LT+ P + + + + IE V P++ W+ ++E V Q
Sbjct: 3 LTVYYPPRVVSLEEPEL---RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 509 KDVS 512
++S
Sbjct: 60 GEIS 63
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 90.1 bits (223), Expect = 7e-21
Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 41/211 (19%)
Query: 117 GDLLVMECVLEASPMP----DIIW----------------YQGTKVIED-----TGRIKM 151
G+ + C SP DI W Y G K+ ++ GR+
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
+ + + + N D G Y+C + G +N L PS
Sbjct: 75 TSNDVKSGDASIN--VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-------KPSGT 125
Query: 212 EKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
E G ++KC+ + +W K + +
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT--PWLAEMTSPVI----S 179
Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
+ + SGTY C V+N G L L++
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 86.7 bits (214), Expect = 1e-19
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 38/209 (18%)
Query: 222 GTLIQMKCKCSAKPRP----EVKWFKADKLVKESSKIKIIVNEQDDTYEIICE------- 270
G + CK + P +++W + + ++ I+ + +
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 271 -------------ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEK 317
+T+ D GTY+C VK G +N L + P+
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-------KPSGTRC 127
Query: 318 PKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK 376
SE+ G ++C+ K + W +T + VK
Sbjct: 128 FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT------SPVISVK 181
Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ E +G Y C ++N G L L++
Sbjct: 182 NASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 81.3 bits (200), Expect = 8e-18
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 19/143 (13%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
A + + N+Q SD G Y+ K G + L V R + +
Sbjct: 84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV-------LVK-PSGTRCFVDGSE-E 134
Query: 116 DGDLLVMEC-VLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
G+ ++C E S W T + + + + N + +
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--------ISVKNASSE 186
Query: 174 DGGNYRCNACNSIGESNANIALN 196
G Y C N +G + L+
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLD 209
Score = 47.8 bits (113), Expect = 2e-06
Identities = 32/233 (13%), Positives = 54/233 (23%), Gaps = 81/233 (34%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP----EIVWFHEGKELQQTDR--ISWN--- 361
P IEK K G+ + CK P +I W + Q D+ I ++
Sbjct: 6 PEQRIEKAK------GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDK 59
Query: 362 -VTLKGDKYHIR--------------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
R + V + + D G Y+C +K G N L +
Sbjct: 60 IYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
Query: 407 MVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTI 466
V P +
Sbjct: 120 ----------------------------------------------VKPSGTRCFVDGSE 133
Query: 467 SKKKTVVIECKVMSMY-EPSVTWMKEKNTVKEDNKHVVHIE----QVKDVSMN 514
++C+ W K ++ + + VK+ S
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE 186
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 86.2 bits (214), Expect = 1e-20
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PP FI+ P+ S G+ M+ KV P P++ W+ G+ +Q D V+ KG
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---L 61
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
L + R D G Y C KN GE + L++
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 80.4 bits (199), Expect = 1e-18
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
GA P FI+ P + + G +M K S P P+V W+ + V+ K+IV+E+
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 263 DTYEIIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
+ D+G Y C KN GE+ + L++ A+
Sbjct: 61 -----LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 72.7 bits (179), Expect = 6e-16
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
PRF + P +G M+ + P PD+ WY + ++ KM G +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS- 63
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
L D G Y C A N GE+ + L+ E
Sbjct: 64 ---LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 50.8 bits (122), Expect = 2e-08
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
Y G ++ D + + L L + V+ SD+G Y +AKN+ GE + TV L
Sbjct: 40 YLNGRTVQSDDLHKMIVSEKG-----LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
Query: 89 NFSEED 94
+ ++
Sbjct: 95 DVLAKE 100
Score = 44.2 bits (105), Expect = 5e-06
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
P +VP+ ++I + + ++ KV + P V+W TV+ D+ H + + +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE 58
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 89.3 bits (221), Expect = 1e-20
Identities = 34/193 (17%), Positives = 53/193 (27%), Gaps = 20/193 (10%)
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKES------SKIKIIVNEQDDTYEIICE--- 270
E TL + S P EV WFK ++ + I ++I
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 271 ----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
+T G Y C +K E +L++ P T +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDF 119
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
++ + C V A P P + W + V + D K
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179
Query: 387 KCNIKNFHGELNA 399
C KN E +
Sbjct: 180 TCVGKNDKEEAHG 192
Score = 83.2 bits (205), Expect = 1e-18
Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 22/194 (11%)
Query: 117 GDLLVMECV---LEASPMPDIIWY----QGTKVIEDT--------GRIKMSKKSIGKDTY 161
G+ + + + P ++ W+ +V+ I +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
L + GNY C E L+ +
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-------KPLTLSVHSERSQFPD 118
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
+++ + C +A P P V+W + + + V ++ D + P
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178
Query: 282 YRCNVKNEFGESNA 295
C KN+ E++
Sbjct: 179 VTCVGKNDKEEAHG 192
Score = 75.1 bits (184), Expect = 1e-15
Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 22/140 (15%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQ 115
L + S G Y K E + +L+ + P +
Sbjct: 69 LVVTAANISHDGNYLCRMKLGETEVTKQEHLS-------VVKP----LTLSVHSERSQFP 117
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVI----EDTGRIKMSKKSIGKDTYLLRLEINNPT 171
D +L + C + A P P + W V G + KD L +
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE-----KDGSLSVAVDLSLP 172
Query: 172 KDDGGNYRCNACNSIGESNA 191
K C N E++
Sbjct: 173 KPWHLPVTCVGKNDKEEAHG 192
Score = 54.7 bits (131), Expect = 8e-09
Identities = 24/201 (11%), Positives = 43/201 (21%), Gaps = 62/201 (30%)
Query: 326 GKLVVMEC---KVKAKPMPEIVWFHEGKELQQT-------------DRISWNVTLKGDKY 369
G+ V + +V P E+ WF G +Q +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
L V G Y C +K E+ L++
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV----------------------- 102
Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
+ + + + C V + P V W+
Sbjct: 103 -----------------------KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139
Query: 490 KEKNTVKEDNKHVVHIEQVKD 510
+ + + KD
Sbjct: 140 MPEGVEPAPTAANGGVMKEKD 160
Score = 34.6 bits (79), Expect = 0.040
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGE 81
L+V ++ K + KN E
Sbjct: 163 LSVAVDLSLPKPWHLPVTCVGKNDKEE 189
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 85.4 bits (212), Expect = 2e-20
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P + + G+ V++KP E+ W+H G ELQ++ +I
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI----HYTNTSGV 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ LE+ D +D+G Y+ N+ GE + TL++
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 79.6 bits (197), Expect = 2e-18
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 95 GKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS 152
G + APR + H G +++ P ++ WY ++++ +I +
Sbjct: 1 GPFTLD--HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT 58
Query: 153 KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
+ +L LEI + DD G YR N GE++ L+ GG+
Sbjct: 59 N-----TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 78.1 bits (193), Expect = 8e-18
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP + R G + +KP EVKW+ ++ESSKI + +
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT----NTSGV 63
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
+ EI D DSGTYR N GE++ L++
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 47.3 bits (113), Expect = 4e-07
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 2 TFPKELKSYT-LEGEPTK---QIEANFQMNM--YHKGSLLKMSDRLSSTLVQDQSRLYYL 55
++S+ G+ T+ +++ + YH G L+ S ++ T L
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL--- 66
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
I + DSG Y+ + N GE S L+
Sbjct: 67 ---EILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 41.5 bits (98), Expect = 4e-05
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQV 508
TL P I + + + V S V W ++E +K H
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI--HYTNT 60
Query: 509 KDVS 512
V
Sbjct: 61 SGVL 64
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 85.0 bits (211), Expect = 3e-20
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
PPTF +S + G+ V+M +V+ +P P + W + ++ R + +
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRR---FAEEAEGGL 61
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
RL + + D G Y C N +G L +
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 78.1 bits (193), Expect = 7e-18
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
G+ P+F G + M + +P+P V W + + V+ + E
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 263 DTYEIIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
+C I D+G Y C NE+G L + E
Sbjct: 61 -----LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 70.0 bits (172), Expect = 5e-15
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 103 KAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
P F ++G ++M ++ P P + W + + + R +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA----EEAEG 59
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
L RL I + D G Y C A N G L +G
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 45.3 bits (108), Expect = 2e-06
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
++ R + + L L I ++ D+G Y A N+ G L
Sbjct: 40 LRNRQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Query: 89 N 89
Sbjct: 95 E 95
Score = 42.6 bits (101), Expect = 2e-05
Identities = 8/53 (15%), Positives = 24/53 (45%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
P + ++ + + V++ +V +P V+W++ + V+ D + +
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 84.0 bits (208), Expect = 5e-20
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG-DKY 369
PT S + VK P P + WF+ G L ++ I + + +Y
Sbjct: 4 APTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
H L++ +P + G Y KN +G+ ++ +
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
Score = 83.3 bits (206), Expect = 1e-19
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 104 APRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
AP + PT + ++ +P P + W+ ++ ++ I Y
Sbjct: 4 APTITFLESPTSDHH---WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
L+++NPT + G+Y A N G+ I+ +F G
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 83.3 bits (206), Expect = 1e-19
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
FAP+ + + P+P ++WF ++ ES I ++ + T
Sbjct: 3 FAPTITFLESPTSDHHWCI---PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 266 EIIC-EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
C ++ +P ++G Y KNE+G+ ++ +
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 59.4 bits (144), Expect = 3e-11
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
++ G++L S + + + Y+ L + N ++G+Y +IAKN+ G+ ++
Sbjct: 36 FYNGAILNESKYICTKIHVTNHTEYH-GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
Query: 89 NFSE 92
+F
Sbjct: 95 HFMG 98
Score = 39.0 bits (91), Expect = 4e-04
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 3/63 (4%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMN 514
P I + I V +P++ W + E I +
Sbjct: 5 PTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 515 FEL 517
L
Sbjct: 62 GCL 64
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 83.5 bits (207), Expect = 6e-20
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P + + + G +E P P W + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE----LLVDAKSST 57
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ ++ D+G YK +KN GE A + ++
Sbjct: 58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 78.5 bits (194), Expect = 3e-18
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P + R I ++G ++ P P W D + ++ + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI- 60
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302
DSG Y+ VKNE GE A + ++
Sbjct: 61 ---FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 71.6 bits (176), Expect = 1e-15
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 104 APRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
P+ + + G +E +P P W G + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD-----AKSS 56
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+ + + D GNY+ N +GE A + Q
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 52.3 bits (126), Expect = 7e-09
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 12/77 (15%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
G P S ++ L + + + +++DSG YK
Sbjct: 27 IGAPDPTAT------WTVGDSGAALAPELLVDAKSSTT------SIFFPSAKRADSGNYK 74
Query: 73 VIAKNKNGEGSSTVNLN 89
+ KN+ GE + +
Sbjct: 75 LKVKNELGEDEAIFEVI 91
Score = 40.4 bits (95), Expect = 9e-05
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
P I + + I T +E + +P+ TW + + +V +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK 54
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 83.5 bits (207), Expect = 8e-20
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
P + P E+ + ++ G +V KP PE W+ G +++++DRI W
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
L ++D ED+ N GE +++ L ++
Sbjct: 61 V---CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
Score = 77.7 bits (192), Expect = 9e-18
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP E+ + G+ + + KP PE +W+K ++ S +I E +
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---- 60
Query: 267 IIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
+C I D G DS + N GE++++ L ++A+
Sbjct: 61 -VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 76.2 bits (188), Expect = 3e-17
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 100 PGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
P +AP+ ++ G + P P+ WY+ IE + RI
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
L I + T +D + A N GE++++ L Q
Sbjct: 61 VCE----LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 47.3 bits (113), Expect = 4e-07
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
Y G ++ SDR+ + + L I++V DS V A N GE SS L
Sbjct: 40 YKNGVKIERSDRI--YWYWPEDNVC---ELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
Query: 89 NFSEE 93
+
Sbjct: 95 LVQAK 99
Score = 37.6 bits (88), Expect = 0.001
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
P I E + T+ + +V+ +P W K ++ ++ + +
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE 58
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 83.1 bits (206), Expect = 1e-19
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
P P + + + + K +P P +W +GK + Q + ++
Sbjct: 2 PISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYK--LSEDK 59
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
+ LE+ D+GLY C +KN G ++++ L I+ +
Sbjct: 60 GGF--FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 75.0 bits (185), Expect = 9e-17
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
P + + S ++ + K + +PRP W K K + + K K+ E +
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLS--EDKGGFF 63
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
+ EI DSG Y C VKN G +++ L I+A
Sbjct: 64 L--EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 69.6 bits (171), Expect = 7e-15
Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 100 PGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
P P T + P P IW + K I G+ K+S+
Sbjct: 2 PISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE---- 57
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
D LEI+ D G Y C NS G +++ L +
Sbjct: 58 -DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 45.0 bits (107), Expect = 3e-06
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G + + L +D+ L I SDSG Y KN G SS+ L
Sbjct: 41 TKDGKAITQGGKY--KLSEDKG----GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 39.2 bits (92), Expect = 3e-04
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 451 LSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
+S PVI + T+S K P+ W K+ + + K+ + ++
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 83.6 bits (207), Expect = 1e-19
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKY 369
P FI KP+ + G V +EC++ A P P++ W + +Q TDRIS + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS---LYQDNTG 71
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ L +KD K+D G Y + N G N L++
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Score = 75.9 bits (187), Expect = 7e-17
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP FI KP+ G ++++C+ SA P P++ W + +++V+ ++ + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315
+ I D D+G Y + NE G + N L++ A P
Sbjct: 75 L--LIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA-------RPNQT 114
Score = 75.5 bits (186), Expect = 8e-17
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 103 KAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKD 159
+AP F KP +GD + +EC + A P P + W + ++++ +T RI + + + G+
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
T L I + K D G Y +A N G + N L+
Sbjct: 74 T----LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+++ + S + R L IK+V K D+G Y V A N+ G + L
Sbjct: 50 KRNNEMVQFNTDRISLYQDNTGR----VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Query: 89 N 89
+
Sbjct: 106 D 106
Score = 42.4 bits (100), Expect = 3e-05
Identities = 8/65 (12%), Positives = 25/65 (38%)
Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
+ P+ P+ + + +V +EC++ ++ P + W + V+ +
Sbjct: 3 HHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDR 62
Query: 502 VVHIE 506
+ +
Sbjct: 63 ISLYQ 67
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 85.9 bits (212), Expect = 2e-19
Identities = 31/212 (14%), Positives = 61/212 (28%), Gaps = 23/212 (10%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWY------QGTKVIEDTGRIKMSKKSIGKDTY 161
PK+ G + +EC + ++ + R + ++ +
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 67
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
L I + D G YRC + + A RI+
Sbjct: 68 LFH--IPSVQVRDSGQYRCLVICGAAWDYKYLTVKV--------KASYMRIDTRILEVPG 117
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
+Q+ C+ P EV W S + + Y++ + S
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSH-----IRTPEGLYQVTSVLRLKPQ-PSRN 171
Query: 282 YRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
+ C N + + ++ + EP+ P T
Sbjct: 172 FSCMFWNAHMKELTSAIIDPLSRMEPK-VPRT 202
Score = 66.2 bits (161), Expect = 9e-13
Identities = 27/190 (14%), Positives = 62/190 (32%), Gaps = 19/190 (10%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-----IIVNEQDDTYEIICEITDPIG 276
G+ + ++C + E++ +A E+ ++ EQ + + I
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
DSG YRC V L + + +I G V + C+ +
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKV--------KASYMRIDTRILEVPGTGEVQLTCQAR 128
Query: 337 AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
P+ E+ W + + + Y + ++ + + + + C N H +
Sbjct: 129 GYPLAEVSWQNVSVPANTSHIRTPEGL-----YQVTSVLR-LKPQPSRNFSCMFWNAHMK 182
Query: 397 LNANLTLNIE 406
+ ++
Sbjct: 183 ELTSAIIDPL 192
Score = 58.9 bits (142), Expect = 3e-10
Identities = 17/136 (12%), Positives = 39/136 (28%), Gaps = 17/136 (12%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
A+ I +VQ DSG+Y+ + + + ++ + P
Sbjct: 67 ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG--------- 117
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
+ + C P+ ++ W + + + G L +
Sbjct: 118 -TGEVQLTCQARGYPLAEVSWQNVSVPANTS----HIRTPEGLYQVTSVLRLKP---QPS 169
Query: 176 GNYRCNACNSIGESNA 191
N+ C N+ +
Sbjct: 170 RNFSCMFWNAHMKELT 185
Score = 42.3 bits (99), Expect = 1e-04
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDKYHIR---LEVKDPRK 380
G V +EC + E+ + T S TL ++ + + +
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 381 EDTGLYKCNIKNFHGELNANLTLNIEM 407
D+G Y+C + LT+ ++
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKA 103
Score = 31.9 bits (72), Expect = 0.31
Identities = 8/75 (10%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 35 LKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED 94
+S +++ ++ LY V ++ ++ S + + N + + ++
Sbjct: 138 QNVSVPANTSHIRTPEGLYQ--VTSVLRLKPQPSRNFSCMFWNAHMKELTSAI------- 188
Query: 95 GKLKVPGGKAPRFPK 109
+ P+ P+
Sbjct: 189 --IDPLSRMEPKVPR 201
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 85.1 bits (210), Expect = 2e-19
Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 32/198 (16%)
Query: 112 TIHQDGDLLVMECVLEASPMPDI--IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN 169
T+ G +++ C L S W +G V+++ E
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK------------TEFKV 55
Query: 170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKC 229
+ D G Y C ANI L+ P G + C
Sbjct: 56 DSDDQWGEYSCVFLPEPM-GTANIQLHGP---------PRVKAVKSSEHINEGETAMLVC 105
Query: 230 KCSAKPRP-EVKWFKA----DKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYR 283
K + P + W+K DK + S+ + V+ E+ I + D G YR
Sbjct: 106 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELH--IENLNMEADPGQYR 163
Query: 284 CNVKNEFGESNANLNLNI 301
CN + G A + L +
Sbjct: 164 CNGTSSKGSDQAIITLRV 181
Score = 78.9 bits (194), Expect = 3e-17
Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 27/192 (14%)
Query: 220 ESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
+ G+ I + C + +W K ++KE + E + D
Sbjct: 11 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFKVDSDD---- 59
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
G Y C E N+ + PP G+ ++ CK ++
Sbjct: 60 QWGEYSCVFLPE---PMGTANIQLHG-------PPRVKAVKSSEHINEGETAMLVCKSES 109
Query: 338 KP-MPEIVWFHEGKELQQ--TDRISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCNIKNF 393
P + + W+ + + + + L +++ + D G Y+CN +
Sbjct: 110 VPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169
Query: 394 HGELNANLTLNI 405
G A +TL +
Sbjct: 170 KGSDQAIITLRV 181
Score = 75.1 bits (184), Expect = 7e-16
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 19/146 (13%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--IHQ 115
K GEY + G++ + L+ PR +
Sbjct: 51 TEFKVDSDDQWGEYSCVFLP-EPMGTANIQLHG-------------PPRVKAVKSSEHIN 96
Query: 116 DGDLLVMECVLEASP-MPDIIWYQGTKVIEDTGRIKMSKK-SIGKDTYLLRLEINNPT-K 172
+G+ ++ C E+ P + D WY+ T + + + L I N +
Sbjct: 97 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156
Query: 173 DDGGNYRCNACNSIGESNANIALNFQ 198
D G YRCN +S G A I L +
Sbjct: 157 ADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 48.1 bits (114), Expect = 1e-06
Identities = 22/174 (12%), Positives = 40/174 (22%), Gaps = 65/174 (37%)
Query: 326 GKLVVMECKVKAKPMPEI--VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
G +++ C + W G L++ E K +
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-----------TEFKVDSDDQW 61
Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
G Y C F E + +
Sbjct: 62 GEYSCV---FLPEPMGTANIQLH------------------------------------- 81
Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTV 495
P ++ V I++ +T ++ CK S P W K ++
Sbjct: 82 ---------GPPRVKAVKSSEHINEGETAMLVCKSES-VPPVTDWAWYKITDSE 125
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 87.2 bits (215), Expect = 4e-19
Identities = 42/332 (12%), Positives = 94/332 (28%), Gaps = 75/332 (22%)
Query: 104 APRF---PKKPTIHQDGDLLVMECVLEAS-PMPDIIWYQ----GTKVIEDTGRIKMSKKS 155
A K GD + + P+P + Y +T
Sbjct: 2 AFTVSIQSNKRCFLA-GDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT------- 53
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
L + + T ++ G+Y+ ++ ++ + I +P+
Sbjct: 54 ---------LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEE----AELIVNITEPQ 100
Query: 216 IIPNESGTLIQMKCKC---SAKPRPEV-----KWFKADKLVKESSKIKIIVNEQDDTYEI 267
S T +++ K + W K + ++ + I
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI------------- 147
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ--G 325
I + +G Y V E +S A+ + I +++ + S+
Sbjct: 148 --TIQEFTADKNGVYTVKVWGESEDSAASASTKIML-------ATMNVDQDVVESKTVAL 198
Query: 326 GKLVVMECKV------KAKPMPEIV----WFHEGKELQQTDRISWNVTLKGDKYHI---- 371
G + + V + MP + W+ + + I V + + I
Sbjct: 199 GNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG 258
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
L + +DT + C K + + + +
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 83.3 bits (205), Expect = 8e-18
Identities = 34/270 (12%), Positives = 73/270 (27%), Gaps = 57/270 (21%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--I 113
A LT+ + ++G YKV ++ + S + + + +P
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEV--------FLMEEAELIVNITEPQHFY 103
Query: 114 HQDGDLLVMECVLEAS---PMPDII-----WYQGTKVIEDTGRIKMSKKSIGKDTYLLRL 165
+ + ++ S D W +G VI+ T +
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ----------------DI 147
Query: 166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR-----IIPNE 220
I T D G Y +S A+ + A +++ +
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIM-------LATMNVDQDVVESKTVALGN 200
Query: 221 SGTL---IQMKCKCSAKPRPEV----KWFKADKLVKESSKIKIIVNEQDDTYEII----C 269
+L + + P + W+ + + I V E + + I
Sbjct: 201 EISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHL 260
Query: 270 EITDPIGPDSGTYRCNVKNEFGESNANLNL 299
D+ + C K + + +
Sbjct: 261 FKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 57.9 bits (139), Expect = 2e-09
Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 41/209 (19%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSA-KPRPE---VKWFKADKLVKESSKIKIIVNEQD 262
A + + +G + + +P P W K D+ + ++ + +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATS 61
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
+ ++G+Y+ V++ ++ + + EAE I +P+
Sbjct: 62 E--------------NAGSYKVTVQDTDTMTSVESEVFLMEEAEL----IVNITEPQHFY 103
Query: 323 EQGGKLVVMECKVKA---KPMPEIVWFHEGKELQQTDRISWNVTLKGDKY---HIRLEVK 376
V + VK K + H SW KG+ + ++
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELH----------YSW---SKGEDVIDTTQDITIQ 150
Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ + G+Y + + A+ + I
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAASASTKI 179
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 85.7 bits (211), Expect = 5e-19
Identities = 32/237 (13%), Positives = 65/237 (27%), Gaps = 53/237 (22%)
Query: 222 GTLIQMKCKC---SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP- 277
G +++ C + P + W K + + K N Q + + +
Sbjct: 17 GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFG 76
Query: 278 ------------------------DSGTYRCNVKN-----EFGESNANLNLNIEAEAEPE 308
D G Y C V EFG ++ L +
Sbjct: 77 DFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPS- 135
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
+ ++ G + M C + W+ + + ++ ++
Sbjct: 136 --NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193
Query: 369 YHIR-----------------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
+ I L ++ + D G C + GEL+A+ + I V
Sbjct: 194 FGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
Score = 82.7 bits (203), Expect = 6e-18
Identities = 36/243 (14%), Positives = 64/243 (26%), Gaps = 52/243 (21%)
Query: 108 PKKPTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT---- 160
G + + C + + P I W +G T K + G+
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 161 ----------YLLR----------LEINNPTKDDGGNYRCNACNS-----IGESNANIAL 195
+L R L + + DGG Y C G ++ L
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127
Query: 196 NFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK 255
G + ++ + G I M C C+ V W+ +
Sbjct: 128 KVTGH---TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGT 184
Query: 256 IIVNEQDDTYEIICEITDPIGP-----------------DSGTYRCNVKNEFGESNANLN 298
+ + I ++ G D+G C + GE +A+ +
Sbjct: 185 YQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244
Query: 299 LNI 301
I
Sbjct: 245 STI 247
Score = 74.6 bits (182), Expect = 3e-15
Identities = 26/162 (16%), Positives = 43/162 (26%), Gaps = 26/162 (16%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPR-----FPKK 110
L + +V D G Y + + LKV G +
Sbjct: 90 PTLRLTHVHPQDGGRYWCQVAQWSIRT----EFGLDAKSVVLKVTGHTPSNNVHVSTAEV 145
Query: 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR----IKMSKKSIGKDTYLLR-- 164
+ + G+ + M C ++ WY G E+ +K G +
Sbjct: 146 VQVDE-GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA 204
Query: 165 ----------LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L I D G C GE +A+ +
Sbjct: 205 GRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Score = 53.8 bits (128), Expect = 3e-08
Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 23/192 (11%)
Query: 326 GKLVVMECKVKA---KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
G V + C + P I W + T N +G+ + D KE
Sbjct: 17 GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG--LGFVESDSYKES 74
Query: 383 TGLYKCNIKNFHGELNANLTLNIEMVRFI---KYRVR-SNKGIVGKMGLVKTRSYHRDFS 438
G + A TL + V +Y + + I + GL +
Sbjct: 75 FGDFLGRA---SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG 131
Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED 498
P V +VV + + + + C +VTW +
Sbjct: 132 HTPSN-----------NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENY 180
Query: 499 NKHVVHIEQVKD 510
K+
Sbjct: 181 ETGTYQPLANKN 192
Score = 43.0 bits (100), Expect = 1e-04
Identities = 8/70 (11%), Positives = 20/70 (28%)
Query: 20 IEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN 79
E + + S+ + ++ L I+ + +D+G
Sbjct: 177 FENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236
Query: 80 GEGSSTVNLN 89
GE + +
Sbjct: 237 GELDADRSST 246
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 80.1 bits (198), Expect = 2e-18
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ AP F K + G + C+ + P+P++ WFK K + S I
Sbjct: 1 GSSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
+ D T + T D G Y N G + L ++A
Sbjct: 61 DLDGTCSL--HTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 78.6 bits (194), Expect = 6e-18
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
+ P F K K G V C+V P P+I WF +GK++ + +
Sbjct: 2 SSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQR 60
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
D L +D G Y N G ++ L ++
Sbjct: 61 DLDGTC-SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101
Score = 73.2 bits (180), Expect = 5e-16
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGK 158
AP F K + +G + C + +P P I W+ G ++ + + + G
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG- 64
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENG 203
L T DD GNY A N G + L Q +G
Sbjct: 65 ---TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 45.0 bits (107), Expect = 3e-06
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 2 TFPKELKSYT-LEGEPTK---QIEANFQMNM--YHKGSLLKMSDRLSSTLVQDQSRLYYL 55
F +LK Y EG P ++ N + + + G + +
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT---- 65
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L D G Y ++A N G S T L
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 39.6 bits (93), Expect = 3e-04
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
P K I + V C+V +P + W K+ + + H
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYT 57
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 82.2 bits (203), Expect = 2e-18
Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 29/186 (15%)
Query: 119 LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR----LEINNPTKDD 174
L + + + DI W + + + K + KDTY L L+I + DD
Sbjct: 18 NLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDD 77
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
Y+ + ++ G++ + + + KP+I + + + C+
Sbjct: 78 QDIYKVSIYDTKGKNVLEKIFDLKI------QER--VSKPKI--SWTCINTTLTCEVMNG 127
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
PE+ ++ K +K S ++ S ++C N+ + +
Sbjct: 128 TDPELNLYQDGKHLKLSQRVITHKWTTS---------------LSAKFKCTAGNKVSKES 172
Query: 295 ANLNLN 300
+ ++
Sbjct: 173 SVEPVS 178
Score = 79.5 bits (196), Expect = 2e-17
Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 31/188 (16%)
Query: 9 SYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS 68
+ I+ + K + + + +D +L+ L IK+++ D
Sbjct: 22 PSFQMSDDIDDIKWEKTSD---KKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78
Query: 69 GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA 128
YKV + G+ + K++ KP I + C +
Sbjct: 79 DIYKVSIYDTKGKNVLEKIFDL-----KIQER-------VSKPKISWTCINTTLTCEVMN 126
Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
P++ YQ K ++ + R+ + T ++C A N + +
Sbjct: 127 GTDPELNLYQDGKHLKLSQRVI----------------THKWTTSLSAKFKCTAGNKVSK 170
Query: 189 SNANIALN 196
++ ++
Sbjct: 171 ESSVEPVS 178
Score = 73.8 bits (181), Expect = 2e-15
Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 32/187 (17%)
Query: 225 IQMKCKCSAK--PRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIIC----EITDPIGP 277
I + ++KW K DK + + ++ DTY++ +I
Sbjct: 17 INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD 76
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
D Y+ ++ + G++ +++ + KPKI + C+V
Sbjct: 77 DQDIYKVSIYDTKGKNVLEKIFDLKIQERVS--------KPKISWT--CINTTLTCEVMN 126
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397
PE+ + +GK L+ + R+ + +KC N +
Sbjct: 127 GTDPELNLYQDGKHLKLSQRVI---------------THKWTTSLSAKFKCTAGNKVSKE 171
Query: 398 NANLTLN 404
++ ++
Sbjct: 172 SSVEPVS 178
Score = 50.3 bits (120), Expect = 2e-07
Identities = 20/183 (10%), Positives = 49/183 (26%), Gaps = 54/183 (29%)
Query: 333 CKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKYHIR----LEVKDPRKEDTGLYK 387
+ + +I W + + R + D Y + L++K + +D +YK
Sbjct: 23 SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYK 82
Query: 388 CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
+I + G+ +++
Sbjct: 83 VSIYDTKGKNVLEKIFDLK----------------------------------------- 101
Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
+ V K + C+VM+ +P + ++ +K + + H
Sbjct: 102 --------IQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWT 153
Query: 508 VKD 510
Sbjct: 154 TSL 156
Score = 35.6 bits (82), Expect = 0.016
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEE 93
+ S S ++K A NK + SS ++ E+
Sbjct: 147 VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 78.3 bits (193), Expect = 6e-18
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 311 PPTFIEKPKIRSE----QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
P + K+ V C PMP + W GKE +Q RI K
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKV 60
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
H L ++ D G Y C ++N +G +N L++
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 69.0 bits (169), Expect = 1e-14
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 103 KAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
+AP + + + + C +PMP + W + K + RI K
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+ L + + D GNY C N G N L+
Sbjct: 63 QHWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 68.6 bits (168), Expect = 2e-14
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 207 APSFIEKPRIIPNE----SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
AP + ++ + ++ +C P P ++W K K K+ +I
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
I+ + D G Y C V+NE+G N +L++
Sbjct: 64 HWSLIMESVVP---SDKGNYTCVVENEYGSINHTYHLDV 99
Score = 46.7 bits (111), Expect = 8e-07
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G K R+ V++Q L +++V SD G Y + +N+ G + T +L
Sbjct: 43 LKNGKEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
Query: 89 N 89
+
Sbjct: 98 D 98
Score = 29.3 bits (66), Expect = 0.86
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
+ ++ + TV C P++ W+K K+++
Sbjct: 8 TNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 80.4 bits (198), Expect = 8e-18
Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 31/186 (16%)
Query: 119 LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR----LEINNPTKDD 174
L + + ++ W +G+ ++ + R K + + + L+I N T+DD
Sbjct: 15 NLNIPNFQMTDDIDEVRWERGSTLVAEFKR--KMKPFLKSGAFEILANGDLKIKNLTRDD 72
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
G Y ++ G N AL+ + E + KP I + + C+
Sbjct: 73 SGTYNVTVYSTNGTRILNKALDLRILE--------MVSKPMIYWE--CSNATLTCEVLEG 122
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
E+K ++ + ++ + + + ++C N + +
Sbjct: 123 TDVELKLYQGKEHLRSLRQKTMSYQWTN---------------LRAPFKCKAVNRVSQES 167
Query: 295 ANLNLN 300
+N
Sbjct: 168 EMEVVN 173
Score = 73.5 bits (180), Expect = 2e-15
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 28/139 (20%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L IKN+ + DSG Y V + NG L+ + KP I+ +
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL------------RILEMVSKPMIYWEC 110
Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
+ C + ++ YQG + + + MS + +
Sbjct: 111 SNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW----------------TNLRAP 154
Query: 178 YRCNACNSIGESNANIALN 196
++C A N + + + +N
Sbjct: 155 FKCKAVNRVSQESEMEVVN 173
Score = 64.2 bits (156), Expect = 3e-12
Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 35/192 (18%)
Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC----EITDP 274
L + EV+W + LV E + K+ + +EI+ +I +
Sbjct: 11 GHGINL-NIPNFQMTDDIDEVRWERGSTLVAEFKR-KMKPFLKSGAFEILANGDLKIKNL 68
Query: 275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
DSGTY V + G N L++ + KP I E + C+
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKALDLRILEM--------VSKPMIYWE--CSNATLTCE 118
Query: 335 VKAKPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
V E+ + + L+ + +S+ T +KC N
Sbjct: 119 VLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------------NLRAPFKCKAVN 161
Query: 393 FHGELNANLTLN 404
+ + +N
Sbjct: 162 RVSQESEMEVVN 173
Score = 51.1 bits (122), Expect = 1e-07
Identities = 19/179 (10%), Positives = 50/179 (27%), Gaps = 54/179 (30%)
Query: 336 KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKDPRKEDTGLYKCNIK 391
+ E+ W + + R LK + I L++K+ ++D+G Y +
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKM-KPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVY 81
Query: 392 NFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTL 451
+ +G N L++ +
Sbjct: 82 STNGTRILNKALDLRI-------------------------------------------- 97
Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKD 510
+ V K + + + C+V+ + + + K ++ + + +
Sbjct: 98 -----LEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL 151
Score = 30.3 bits (68), Expect = 0.91
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 48 DQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
+ L L T+ + +K A N+ + S +N E
Sbjct: 132 GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCPE 176
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 78.1 bits (192), Expect = 9e-18
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKL-VKESSKIKIIVNEQD 262
F+ +P+ G I + + P VKWFK + + + +++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 263 DTYEIIC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
D + ITD +G+YRC V + +N NL +
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 77.0 bits (189), Expect = 2e-17
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLK-- 365
F+ +P+ G + +V + P + WF GK + + ++ ++ L
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDS 62
Query: 366 ----GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
Y L + D + TG Y+C + +N L +
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 61.6 bits (149), Expect = 5e-12
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPM---PDIIWYQGTKV---IEDTGRIKMSKK- 154
F +P G + + + + P + W++G V + +++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
YL L I + G+YRC +N L
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 50.4 bits (120), Expect = 5e-08
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 36 KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
K+ L D++ YL L I + Q + +G Y+ K+ S NL E
Sbjct: 52 KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 34.2 bits (78), Expect = 0.022
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMS---MYEPSVTWMKEKN 493
+ P+ ++ ++ +V + P V W K K
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW 46
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 78.9 bits (194), Expect = 9e-18
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 9/114 (7%)
Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN--- 361
F++ P + G V + C+ P+PEI W+ EG+ W+
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74
Query: 362 --VTLKGDKYHIR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
YH + + +EDTG Y+C N + ++ VR
Sbjct: 75 LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128
Score = 68.9 bits (168), Expect = 3e-14
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI-----KIIV 258
F++ P G +++ C+ P PE++W+ + + ++
Sbjct: 18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDR 77
Query: 259 NEQDDTYEIIC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
TY I + D+GTY C N+ ++ +
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 65.8 bits (160), Expect = 3e-13
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 99 VPGGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
G F + P Q G + + C SP+P+I W+ + D +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 157 GKDTYLLR--------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
+ + I+ ++D G Y C A N ++ A +
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126
Score = 50.0 bits (119), Expect = 1e-07
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 35 LKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
L RL + + + ++I + + D+G Y+ A N T
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
Score = 34.2 bits (78), Expect = 0.035
Identities = 9/67 (13%), Positives = 22/67 (32%)
Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
V S + + P +V + C+ + P + W E + + +
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74
Query: 508 VKDVSMN 514
+ V ++
Sbjct: 75 LDRVHIH 81
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 77.0 bits (190), Expect = 2e-17
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P+F K + G+ V++C V+ P+P I W G+ +Q +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-------EAGV 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L ++D ED G Y C +N G+++ + + +
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 64.3 bits (157), Expect = 5e-13
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
AP F +G V++C + +P+P I W + I+ +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC--------EAG 62
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
+ L I + +D G Y C A N++G+ + + +
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 63.9 bits (156), Expect = 6e-13
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
APSF + G ++C P P + W + ++ + + E
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-----CEAGVAE 65
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
+ I D + D GTY C +N G+ + + + +
Sbjct: 66 L--HIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 40.8 bits (96), Expect = 9e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
A L I++ D G Y +A+N G+ S + +
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVK------EDNKHV 502
+ V P V K + + + V++C V P +TW+ ++ E
Sbjct: 6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE 65
Query: 503 VHIEQV 508
+HI+
Sbjct: 66 LHIQDA 71
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 79.9 bits (197), Expect = 3e-17
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
TY P + + +G + V + C+V A P
Sbjct: 1 ATYAAASSALVP-------------RGSHMYAPKLQGPVAVYTWEGNQ-VNITCEVFAYP 46
Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
I WF +G+ L ++ N+ + LEV + D G Y C N G+ +
Sbjct: 47 SATISWFRDGQLLPSSNYS--NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESL 104
Query: 400 NLTLNI 405
L
Sbjct: 105 EFILVQ 110
Score = 69.9 bits (171), Expect = 7e-14
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
Y + + +AP ++ P + G + + C+ A P
Sbjct: 1 ATYAAASSALVPR-------------GSHMYAP-KLQGPVAVYTWEGNQVNITCEVFAYP 46
Query: 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
+ WF+ +L+ S+ I + + E+T D G Y C N G+ +
Sbjct: 47 SATISWFRDGQLLPSSNYSNIKIYNTPSASYL--EVTPDSENDFGNYNCTAVNRIGQESL 104
Query: 296 NLNLNIEAEAEPEGDPPTFI 315
L A+ P
Sbjct: 105 EFILVQ---ADTPSSPSIDQ 121
Score = 66.0 bits (161), Expect = 1e-12
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 104 APRFPKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
AP+ ++ +G+ + + C + A P I W++ +++ + + + +
Sbjct: 19 APKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS-- 76
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
LE+ +++D GNY C A N IG+ + L
Sbjct: 77 -YLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Score = 49.4 bits (118), Expect = 6e-07
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 23/131 (17%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ G LL S+ + + S + L + ++D G Y A N+ G+ S L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSA----SYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
Query: 89 NFSEEDGKLKVPGGKAPRFPKKPTIH-----------QDGDLLVMECVLEASPMPDIIWY 137
++ P +P + G + +++ E + + +W+
Sbjct: 109 VQAD------TPS--SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH 160
Query: 138 QGTKVIEDTGR 148
++
Sbjct: 161 SKWYDAKEASM 171
Score = 43.7 bits (103), Expect = 4e-05
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSM 513
P ++ P V + V I C+V + +++W ++ + N + I S
Sbjct: 20 PKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASY 77
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 75.5 bits (186), Expect = 7e-17
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
E PT + ++ G+ + + C P P+I+WF + + L + I LK
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI----VLKDG 62
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
L ++ RKED GLY C + G IE
Sbjct: 63 NR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 74.3 bits (183), Expect = 2e-16
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 96 KLKVPGGKAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSK 153
+L V AP G+ + + C +P P I+W++ + + + I +
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61
Query: 154 KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
+ L I K+D G Y C AC+ +G + +G +
Sbjct: 62 GN-------RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
Score = 68.1 bits (167), Expect = 2e-14
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP+ G I++ C S P P++ WFK ++ + E S I + +D
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL----KDGNRN 65
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
+ I D G Y C + G + IE E
Sbjct: 66 LT--IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ L + L L TI+ V+K D G Y A + G
Sbjct: 45 FKDNETLVEDSGI--VLKDGNRNL------TIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96
Query: 89 N 89
Sbjct: 97 I 97
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
+ + V P I + T S +++ + C P + W K+ T+ ED+ V+
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 75.1 bits (185), Expect = 7e-17
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
G + + + G L+ + C+++ I W +G +L +++R + G+
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTR----ITGE- 54
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+EV+D D+GLY C + G ++N+
Sbjct: 55 ---EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Score = 67.0 bits (164), Expect = 4e-14
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
G + + GDLL + C L I W + + ++ R +++ +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE---- 55
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+E+ + D G Y C + G ++N
Sbjct: 56 -----VEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
Score = 62.0 bits (151), Expect = 3e-12
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
G + S + G L+Q++C+ + W + + ES++ +I T
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-------T 52
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
E + E+ D + DSG Y C + G ++N+ +A P G P +
Sbjct: 53 GEEV-EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS-DALPSG-PSS 98
Score = 42.8 bits (101), Expect = 2e-05
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
+ +++ +DSG Y + + +G ++ ++N
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
Score = 38.5 bits (90), Expect = 5e-04
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE--QVKDVS 512
+ + + + C++ S+ W+++ + E N+ + E +V+D
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 77.5 bits (190), Expect = 1e-16
Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 18/192 (9%)
Query: 107 FPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P+ + Q GD + + C P W T + + L
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWR--------TQIDSPLNGKVTNEGTTSTLT 57
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
+N + + +Y C A + I + P E P E+G I
Sbjct: 58 MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYS-------FPKDPEIHLSGPLEAGKPIT 110
Query: 227 MKCKCSA---KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
+KC + R E+ K D L+K ++ + +T + T I
Sbjct: 111 VKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV 170
Query: 284 CNVKNEFGESNA 295
C K E ++
Sbjct: 171 CRAKLHIDEMDS 182
Score = 67.5 bits (164), Expect = 4e-13
Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 17/183 (9%)
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
+ G + + C + P W +S + NE + + ++ +
Sbjct: 14 QIGDSVSLTCSTTGCESPFFSWRTQI----DSPLNGKVTNEGTTSTLTMNPVSFG---NE 66
Query: 280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-- 337
+Y C E + + + I + P E + GK + ++C V
Sbjct: 67 HSYLCTATCESRKLEKGIQVEIYS-------FPKDPEIHLSGPLEAGKPITVKCSVADVY 119
Query: 338 -KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
EI ++ + + + + + ++ + C K E
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 397 LNA 399
+++
Sbjct: 180 MDS 182
Score = 61.7 bits (149), Expect = 3e-11
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 13/138 (9%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
LT+ V + Y A ++ + + + + +
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE---------IYSFPKDPEIHLSGPLEA 105
Query: 117 GDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
G + ++C V + P I +G +++ ++ + + +T L + +D
Sbjct: 106 GKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL-ETKSLEVTFTPVIED 164
Query: 174 DGGNYRCNACNSIGESNA 191
G C A I E ++
Sbjct: 165 IGKVLVCRAKLHIDEMDS 182
Score = 45.5 bits (107), Expect = 1e-05
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 7/101 (6%)
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
Q G V + C P W + N + + L + +
Sbjct: 14 QIGDSVSLTCSTTGCESPFFSWRTQ-------IDSPLNGKVTNEGTTSTLTMNPVSFGNE 66
Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK 424
Y C +L + + I S GK
Sbjct: 67 HSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGK 107
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 74.4 bits (183), Expect = 2e-16
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 5/110 (4%)
Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362
+ +G IE + Q G C++ + WF + L + +
Sbjct: 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE--I 62
Query: 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
+ YH L ++ +D+G + A L + + F +
Sbjct: 63 DAQPGGYH-VLTLRQLALKDSGTIYFEAGDQRAS--AALRVTEKPSVFSR 109
Score = 59.3 bits (144), Expect = 4e-11
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
IE + + G+ +C+ S V WF + + +I
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP 318
+ ++ DSGT G+ A+ L + + P F
Sbjct: 73 TLRQLAL---KDSGTIYFEA----GDQRASAALRVTEK------PSVFSRSG 111
Score = 56.6 bits (137), Expect = 4e-10
Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 6/83 (7%)
Query: 102 GKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
G+ + Q+G C + + + W+ + ++ + G
Sbjct: 11 GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY- 69
Query: 160 TYLLRLEINNPTKDDGGNYRCNA 182
L + D G A
Sbjct: 70 ---HVLTLRQLALKDSGTIYFEA 89
Score = 40.1 bits (94), Expect = 2e-04
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
I E + V + + + C++ V W +K + + + + +
Sbjct: 14 VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ 65
Score = 39.7 bits (93), Expect = 2e-04
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
+ + L ++ Q VLT++ + DSG A ++ + V
Sbjct: 48 FLDKTPLHANELNE-IDAQPGGY----HVLTLRQLALKDSGTIYFEAGDQRASAALRV 100
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 73.6 bits (181), Expect = 5e-16
Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE---QGGKLVVMECKVKAKPMPEIVWFH 347
G S ++ L +PP +R + G+ + + + KP P++VW
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
G L T R+ + + V+ + D+G Y+ +++ + + A + + +
Sbjct: 61 GGAPLD-TSRVHVRTS----DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 66.3 bits (162), Expect = 1e-13
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 199 GGENGAG------FAPSFIEKPRIIPNES---------GTLIQMKCKCSAKPRPEVKWFK 243
G +G E P+I G + + KPRP+V W K
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
+ ++S++ + ++ D + + DSG Y +V+ E + A + + +
Sbjct: 61 GGAPL-DTSRVHVRTSDFDTVFFV----RQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 63.9 bits (156), Expect = 9e-13
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 75 AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDI 134
+ +G + V + E K+++P R ++ I + G+ L + + P P +
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLP-----RHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56
Query: 135 IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
+W +G + DT R+ + + DT + + D G Y + + A I
Sbjct: 57 VWTKGGAPL-DTSRVHVR--TSDFDT---VFFVRQAARSDSGEYELSVQIENMKDTATIR 110
Query: 195 LN 196
+
Sbjct: 111 IR 112
Score = 49.3 bits (118), Expect = 1e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
V ++ +SDSGEY++ + +N + ++T+ +
Sbjct: 79 TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 32.0 bits (73), Expect = 0.13
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 455 PVI---REVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDV 511
P I R + + + + + P V W K + VH+
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSR---VHVRTSDFD 78
Query: 512 S 512
+
Sbjct: 79 T 79
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 72.4 bits (178), Expect = 6e-16
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
+ + G V CK++ ++ W+ ++L+ +++ +T +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYE--ITYEDGVA--I 59
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
L VKD K D G Y+C + N +GE ++ L ++ VR
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 67.0 bits (164), Expect = 5e-14
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 220 ESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPD 278
E G ++ CK + +V W+ + ++ S K +I +D + + D D
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEIT--YEDGVAIL--YVKDITKLD 69
Query: 279 SGTYRCNVKNEFGESNANLNLNIEAEAE 306
GTYRC V N++GE ++ L ++ E
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELFVKGVRE 97
Score = 66.6 bits (163), Expect = 6e-14
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
+ ++G + C +E + WY G + +E++ + +++ +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-----ED 55
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
+ L + + TK D G YRC N GE ++ L +G
Sbjct: 56 GVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
Score = 51.2 bits (123), Expect = 2e-08
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 3 FPKELKSYT-LEGEPTK---QIEAN---FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYL 55
++ EG K +IE Q+ Y L+ S++ T +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDG------V 57
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
A+L +K++ K D G Y+ N GE SS L
Sbjct: 58 AILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Score = 34.6 bits (80), Expect = 0.014
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPS-VTWMKEKNTVKEDNKHVVHIEQ 507
++ + V CK+ + + + VTW ++ K+ + E
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED 55
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 73.1 bits (179), Expect = 7e-16
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS---WNVTLKGD 367
P + ++ + + V +P P + W G L +T I
Sbjct: 3 MPASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
H L + P + G Y N G+ +A++
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Score = 69.2 bits (169), Expect = 2e-14
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 214 PRIIPNESGTLIQMKCKC---SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC- 269
P + + + C +P P ++W ++ E+S I E +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 270 --EITDPIGPDSGTYRCNVKNEFGESNANLNLNI-EAEAEPEGDPPTFIEKPKIRS 322
+ P ++G Y N FG+++A++ + E + P
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119
Score = 66.1 bits (161), Expect = 2e-13
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR--LEINNPTKDDGGNYR 179
+ ++ P P + W V+ +T I + + L +N PT + GNY
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 180 CNACNSIGESNANIALNFQG 199
A N G+++A+I F
Sbjct: 80 LLAANPFGQASASIMAAFMD 99
Score = 57.3 bits (138), Expect = 3e-10
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYL-AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
GS+L + + + ++ + L + ++G Y ++A N G+ S+++
Sbjct: 35 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 94
Query: 88 LNFSEEDGKLKVPG 101
F + +
Sbjct: 95 AAFMDNPFEFNPED 108
Score = 28.8 bits (64), Expect = 1.8
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMN 514
P ++ V + I V PS+ W+ + + E + +
Sbjct: 4 PASVQLHTAVEMHH---WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 515 FELWLGI 521
L +
Sbjct: 61 RHGCLRL 67
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 74.6 bits (183), Expect = 9e-16
Identities = 29/207 (14%), Positives = 60/207 (28%), Gaps = 41/207 (19%)
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT--------GRIKMSKKSIGKDT 160
KK + + GD + + C W ++ G K++ ++ + +
Sbjct: 2 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 161 YLLR----LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
+ L I N +D Y C + E + F + +
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV------------FGLTANSDTHL 109
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
+ +S TL + P V+ + K + +
Sbjct: 110 LQGQSLTL---TLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQ------------- 153
Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEA 303
DSGT+ C V + +++ + A
Sbjct: 154 -DSGTWTCTVLQNQKKVEFKIDIVVLA 179
Score = 72.7 bits (178), Expect = 4e-15
Identities = 23/197 (11%), Positives = 53/197 (26%), Gaps = 42/197 (21%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN-------------EQDDTYEII 268
G +++ C S K + W ++++ ++ + D
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
I + DS TY C V+++ E QG
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLL--------------VFGLTANSDTHLLQGQS- 114
Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ + + P + + Q + L V +D+G + C
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGKT--------------LSVSQLELQDSGTWTC 160
Query: 389 NIKNFHGELNANLTLNI 405
+ ++ + + +
Sbjct: 161 TVLQNQKKVEFKIDIVV 177
Score = 66.5 bits (162), Expect = 5e-13
Identities = 20/155 (12%), Positives = 35/155 (22%), Gaps = 40/155 (25%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH- 114
L IKN++ DS Y +++ E V H
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV------------------FGLTANSDTHL 109
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
G L + P + G+ L ++ D
Sbjct: 110 LQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT---------------LSVSQLELQD 154
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPS 209
G + C + + I + F +
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVL------AFQKA 183
Score = 50.7 bits (121), Expect = 1e-07
Identities = 20/197 (10%), Positives = 51/197 (25%), Gaps = 68/197 (34%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG-------------DKYHIR 372
G V + C K + W + + ++ S+ D+ +
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRS 432
L +K+ + ED+ Y C +++ E
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEE------------------------------------ 93
Query: 433 YHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEK 492
+L + + + +++ + + PSV +
Sbjct: 94 -------------VQLLVFGLT-----ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPR 135
Query: 493 NTVKEDNKHVVHIEQVK 509
+ K + + Q++
Sbjct: 136 GKNIQGGK-TLSVSQLE 151
Score = 34.2 bits (78), Expect = 0.050
Identities = 10/72 (13%), Positives = 21/72 (29%)
Query: 460 VPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWL 519
+ KVV K TV + C W N+ + ++ +
Sbjct: 1 MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 60
Query: 520 GIVEKRGPSIKI 531
+ ++ + I
Sbjct: 61 SLWDQGNFPLII 72
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 74.5 bits (182), Expect = 2e-15
Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 37/210 (17%)
Query: 103 KAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
K +Q+ +++ C + +I W++ K+I K
Sbjct: 4 IKGNHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKK----------- 49
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGE--------------SNANIALNFQGGENGAGFAP 208
+ + + KD G Y+C + + + ++
Sbjct: 50 -KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGS 108
Query: 209 SFIEKPRIIPNESGTLI----QMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
E+ I + + C P E+ W DK + K I D
Sbjct: 109 DGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNI---GSDE 165
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESN 294
+ + + SG Y C + E
Sbjct: 166 DHLSLKEFSELE-QSGYYVCYPRGSKPEDA 194
Score = 65.3 bits (158), Expect = 2e-12
Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 37/182 (20%)
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
+ WFK K++ ++ K N + + G Y+C +
Sbjct: 28 EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-----------PRGMYQCKGSQNKSKPL 76
Query: 295 ANLNLNIEAE--------------------AEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
A+ + I + + G V++ C
Sbjct: 77 QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP 136
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
P EI+W H K + + G + E +G Y C +
Sbjct: 137 QY--PGSEILWQHNDKNIGGDEDDK----NIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 395 GE 396
E
Sbjct: 191 PE 192
Score = 56.1 bits (134), Expect = 3e-09
Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 35/183 (19%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
K+ Q V++ C I WF +GK + + +
Sbjct: 11 KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDK-----------KKWNLGSN 56
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS 438
K+ G+Y+C + +G K + +D +
Sbjct: 57 AKDPRGMYQCKGSQNKSK------------------PLQVYYRMGSADDAKKDAAKKDDA 98
Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED 498
KK + I + P V+IS TV++ C + W + D
Sbjct: 99 KKDDAKKDGSDGNEEMGGITQTPYKVSISGT-TVILTCPQYP--GSEILWQHNDKNIGGD 155
Query: 499 NKH 501
Sbjct: 156 EDD 158
Score = 55.3 bits (132), Expect = 5e-09
Identities = 23/151 (15%), Positives = 39/151 (25%), Gaps = 25/151 (16%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSST-VNLNFSEEDGKLKVPGGKAPRF--------- 107
+ + K G Y+ + + +++ K A +
Sbjct: 51 WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDG 110
Query: 108 --------PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
+ G +++ C P +I+W K I K IG D
Sbjct: 111 NEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKN----IGSD 164
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESN 190
L L + G Y C S E
Sbjct: 165 EDHLSL-KEFSELEQSGYYVCYPRGSKPEDA 194
Score = 35.6 bits (81), Expect = 0.024
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNV-QKSDSGEYKVIAKNKNGEGSST 85
H + + + + L++K + SG Y + E ++
Sbjct: 146 QHNDKNIGGDEDDKNIGSDEDH-------LSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 27.6 bits (60), Expect = 7.9
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 462 KVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
KV + +V++ C + ++TW K+ + +
Sbjct: 11 KVYDYQEDGSVLLTCDAEA---KNITWFKDGKMIGFLTEDKKK 50
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 71.8 bits (175), Expect = 2e-15
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFK---ADKLVKESSKIKI--IVN 259
F++KP + E+G + K + K +P +KWFK + K ++ N
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
+ Y + I + D G YR VK + + N+++EA
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
Score = 64.4 bits (156), Expect = 7e-13
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 302 EAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRI 358
+ E F++KP S + GK V+ KV K + P I WF +GK L+ +
Sbjct: 3 SGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWF-KGKWLELGSKS 61
Query: 359 SWNVTLK------GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
+ K + Y + L + D G Y+ +K + +++E R
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 49.4 bits (117), Expect = 1e-07
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 103 KAPRFPKKPTIHQ--DGDLLVMECVLEASPM---PDIIWYQGTKV---IEDTGRIKMSKK 154
F KKP G V+ + + P I W++G + + R +
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 155 -SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+ + Y + L I D G YR + ++
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 41.3 bits (96), Expect = 8e-05
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 36 KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
K R S + + Y L I V D G Y++ K K+ S N++
Sbjct: 60 KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 31.7 bits (71), Expect = 0.18
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 459 EVPKVVTISKKKTVVIECKVMS---MYEPSVTWMKEKN 493
+ P V++ K V+ KV +P++ W K K
Sbjct: 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKW 54
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 70.5 bits (173), Expect = 4e-15
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
++ + + + V +C+V + W+ G E++ + RI+ ++ G +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRIT--ISHVGRFH- 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
+L + D R ED G Y + + LN ++
Sbjct: 64 -KLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102
Score = 59.7 bits (145), Expect = 3e-11
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ ++ + ++ KC+ S + KW+K V+ S +I I
Sbjct: 1 GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEVS-DEKVTGKWYKNGVEVRPSKRITIS-- 57
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
++++ I D D G Y +A LN
Sbjct: 58 HVGRFHKLV--IDDVRPEDEGDYTFVPDGYALSLSAKLN 94
Score = 54.3 bits (131), Expect = 2e-09
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 104 APRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
+ T+ + V +C + + WY+ + + RI +S
Sbjct: 8 QLEVLQDIADLTVKA-AEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISH-----VG 60
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNA 191
+L I++ +D G+Y +A
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALSLSA 91
Score = 44.3 bits (105), Expect = 5e-06
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
Y G ++ S R+ T+ L I +V+ D G+Y + S+ +N
Sbjct: 42 YKNGVEVRPSKRI--TISHVGRF----HKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 73.3 bits (179), Expect = 5e-15
Identities = 23/209 (11%), Positives = 56/209 (26%), Gaps = 16/209 (7%)
Query: 206 FAPSFIEKPRI--IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
F S ++ + I + + C S V + I D
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRIS--WDS 62
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
I + +G C K + + + + +
Sbjct: 63 KKGFT--IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI---YDVVLSPSHGIEL 117
Query: 324 QGGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKD 377
G+ +V+ C + + + W + + Q ++ ++ + + L +
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+ D GLY C + + + +
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
Score = 71.4 bits (174), Expect = 2e-14
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 10/144 (6%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
TI + S +G AK + S + + V P G
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV-----LSPSHGIELSVG 120
Query: 118 DLLVMECVLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR---LEINNPTK 172
+ LV+ C W + + + K+ L I+ T+
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 173 DDGGNYRCNACNSIGESNANIALN 196
D G Y C A + + + +
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVR 204
Score = 45.6 bits (107), Expect = 1e-05
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 11 TLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYL--AVLTIKNVQKSDS 68
T E I+ N + S + ++ L + LTI V +SD
Sbjct: 128 TARTELNVGID----FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 183
Query: 69 GEYKVIAKNKNGEGSSTVNLN 89
G Y A + ++ +
Sbjct: 184 GLYTCAASSGLMTKKNSTFVR 204
Score = 35.2 bits (80), Expect = 0.032
Identities = 23/215 (10%), Positives = 58/215 (26%), Gaps = 55/215 (25%)
Query: 312 PTFIEKPKIR--SEQGGKLVVMECKVKAKPMPEIVWFHEGKE---LQQTDRISWNVTLKG 366
+ ++ + +E K VV+ C + + E + +RISW+
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDS---- 62
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
+ G+ C K + + + +
Sbjct: 63 ---KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV--------------------- 98
Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSV 486
V+ + V+ + +S + +V+ C + +
Sbjct: 99 ---------------------VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 487 TWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGI 521
+ E + K +K +V+ + + +L
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172
Score = 31.7 bits (71), Expect = 0.49
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 454 VPVIREVPKVVTIS--KKKTVVIECKVMSMYEPSVTWMKEKNTVK 496
+ + + VV I+ K KTVVI C S+ +V+ +
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKR 50
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 69.3 bits (170), Expect = 9e-15
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P I+ + + G+ V + C++ P + W + K ++++ + V +G
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYD--VVCEGTMA- 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L ++ +D G Y C ++ A+L
Sbjct: 64 -MLVIRGASLKDAGEYTCEVEASKST--ASLH 92
Score = 56.2 bits (136), Expect = 3e-10
Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ + I+ G ++++C+ S P V W K K +++S K ++
Sbjct: 1 GSSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVV-- 57
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
+ ++ I D+G Y C V+ + +L++E +A
Sbjct: 58 CEGTMAMLV--IRGASLKDAGEYTCEVEASKSTA----SLHVEEKASG 99
Score = 53.1 bits (128), Expect = 4e-09
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 105 PRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
K G+ + + C L + P + W + K I + + + + +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGTM 62
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANI 193
L I + D G Y C S ++ ++
Sbjct: 63 AMLVIRGASLKDAGEYTCEVEASKSTASLHV 93
Score = 42.7 bits (101), Expect = 2e-05
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
++ S + +V + + A+L I+ D+GEY + S V
Sbjct: 42 LKDRKAIRKSQKYD--VVCEGTM----AMLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 68.6 bits (168), Expect = 1e-14
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKY 369
PP ++ P ++ +++CK P+P I W EG D R + + +G
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRAT--IQEQGT-- 63
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
L++K+ R DTG Y C + GE + + L++
Sbjct: 64 ---LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 62.0 bits (151), Expect = 3e-12
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ P ++ P +KCK + P P + W K I
Sbjct: 1 GSSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE 60
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
T +I + D+GTY C + GE++ + L++
Sbjct: 61 --QGTL----QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 60.9 bits (148), Expect = 7e-12
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDT 160
P + P +++C P+P I W +G R + ++
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT---- 63
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L+I N D G Y C A +S GE++ + L+
Sbjct: 64 ----LQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 43.9 bits (104), Expect = 6e-06
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 44 TLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
T R L IKN++ SD+G Y +A + +GE S + L+
Sbjct: 48 TFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-------HIEQ 507
P+I + P T++ T +++CK P ++W+KE T + I+
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKN 68
Query: 508 VK 509
++
Sbjct: 69 LR 70
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 68.6 bits (168), Expect = 2e-14
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
++ K G+ EC + +W GK + + R T +G KY
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQ--ATRQGRKY 65
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L V++ D G +++ + A+L
Sbjct: 66 --ILVVREAAPSDAGEVVFSVRGLTSK--ASLI 94
Score = 50.9 bits (122), Expect = 3e-08
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIV 258
G +G+ ++ + + G +C S W K V SS+ +
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT- 59
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL 297
Q Y ++ + + D+G +V+ S A+L
Sbjct: 60 -RQGRKYILV--VREAAPSDAGEVVFSVRGL--TSKASL 93
Score = 50.5 bits (121), Expect = 4e-08
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 105 PRFPK--KPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
K K +G+ ECVL S +W G K + + R + + +
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT-----RQGR 63
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGE 188
L + D G + +
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLTSK 90
Score = 41.2 bits (97), Expect = 6e-05
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
G + S R + + +L ++ SD+GE + + S V
Sbjct: 44 TVGGKTVGSSSRF--QATRQGRK----YILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96
Score = 33.9 bits (78), Expect = 0.022
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMY-EPSVTWMKEKNTVKEDNKHVVHIE 506
I + K + + + ++ EC + W TV ++ +
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ 61
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 68.1 bits (167), Expect = 2e-14
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
+ G+ E ++ ++P W +G+ L + + G K+
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCE--IIEDGKKH- 60
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L + + + TG N ANL
Sbjct: 61 -ILILHNCQLGMTGEVSFQAANTKSA--ANLK 89
Score = 50.0 bits (120), Expect = 4e-08
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
GA + + G + + S +P +W + + S +II + +
Sbjct: 1 GAMALIEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
+ + +G N +S ANL
Sbjct: 60 HI----LILHNCQLGMTGEVSFQAANT--KSAANLK 89
Score = 48.8 bits (117), Expect = 1e-07
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
K G+ E L + P W + + + ++ + D
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DG 57
Query: 161 YLLRLEINNPTKDDGGNYRCNACNS 185
L ++N G A N+
Sbjct: 58 KKHILILHNCQLGMTGEVSFQAANT 82
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
KG L S +++D + +L + N Q +GE A N + V
Sbjct: 39 KLKGQPLAASPDCE--IIEDGKK----HILILHNCQLGMTGEVSFQAANTKSAANLKV 90
Score = 33.0 bits (76), Expect = 0.042
Identities = 5/53 (9%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
+ + + V + +T E ++ S + W + + + +
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIED 56
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 68.1 bits (167), Expect = 2e-14
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P + + + G V M +V ++ +++W G EL + D K D
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L D +ED G Y+ E A L
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCE--AELI 96
Score = 50.0 bits (120), Expect = 5e-08
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ + G ++M + S + +V W K + K
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYR 59
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
+ D I +D + D G Y+ G+ A L
Sbjct: 60 FKKDGKRHILIFSDVVQEDRGRYQVITNG--GQCEAELI 96
Score = 45.8 bits (109), Expect = 1e-06
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 102 GKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
Q GD + M + + ++W + + K ++ KD
Sbjct: 6 SGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKD 63
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANI 193
L ++ ++D G Y+ G+ A +
Sbjct: 64 GKRHILIFSDVVQEDRGRYQVITNG--GQCEAEL 95
Score = 39.2 bits (92), Expect = 3e-04
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKD 510
+I + + V + +V S V WMK + ++ KD
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 29 YHKGSLLKMSDRLSS--TLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
G L D + +D R +L +V + D G Y+VI E V
Sbjct: 42 MKNGVELTREDSFKARYRFKKDGKR----HILIFSDVVQEDRGRYQVITNGGQCEAELIV 97
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 68.6 bits (168), Expect = 2e-14
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 310 DPPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
D ++I P + + VV+ C++ +P E+ W +G+E+ ++ + L+
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL----LLQK 63
Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
+ RL + + ED+G Y C I + + +T+ VR I
Sbjct: 64 EDTVRRLVLPAVQLEDSGEYLCEIDD--ESASFTVTVTEPPVRIIY 107
Score = 57.1 bits (138), Expect = 2e-10
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 95 GKLKVPGGKAPRFPKKPTIHQD-----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI 149
G G + P+ + +V+ C L P ++ W + + + ++ +
Sbjct: 1 GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL 59
Query: 150 KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
+ K + + RL + +D G Y C
Sbjct: 60 LLQK-----EDTVRRLVLPAVQLEDSGEYLCEI 87
Score = 55.5 bits (134), Expect = 8e-10
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 207 APSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
S+I P + + + C+ +P EV+W K + V ES + + ++D
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQ--KEDT 66
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
++ + DSG Y C + +E ++ + + +PP I S
Sbjct: 67 VRRLV--LPAVQLEDSGEYLCEIDDE--SASFTVTVT---------EPPVRIIYSGPSS 112
Score = 37.4 bits (87), Expect = 0.001
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
G + S L L ++ + L + VQ DSGEY + S++ +
Sbjct: 47 TKDGEEVVESPAL--LLQKEDTV----RRLVLPAVQLEDSGEYLCEI----DDESASFTV 96
Query: 89 N 89
Sbjct: 97 T 97
Score = 37.4 bits (87), Expect = 0.002
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 447 SVLTLSVVPVIREVPKV---VTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
S + + V P V + + VV+ C++ V W K+ V E ++
Sbjct: 3 SGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLL 61
Query: 504 HIE 506
E
Sbjct: 62 QKE 64
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 68.1 bits (167), Expect = 2e-14
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
F E+ + V CK P + W EL+ + + + +G
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQ--PSQEGLTL- 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
RL + K D+ Y C+I A L
Sbjct: 64 -RLTISALEKADSDTYTCDIGQAQSR--AQLL 92
Score = 60.8 bits (148), Expect = 9e-12
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ A F E+ + E CK P V W K ++ S K +
Sbjct: 1 GSSGSSGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPS-- 57
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
++ T + I+ DS TY C++ +S A L
Sbjct: 58 QEGLTLRLT--ISALEKADSDTYTCDIGQA--QSRAQLL 92
Score = 58.1 bits (141), Expect = 7e-11
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 102 GKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
A F ++ T Q + V C E P + W +G + +G+ + S+ +
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQ-----E 59
Query: 160 TYLLRLEINNPTKDDGGNYRCNA 182
LRL I+ K D Y C+
Sbjct: 60 GLTLRLTISALEKADSDTYTCDI 82
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
L+ S + Q+ LTI ++K+DS Y G+ S L
Sbjct: 42 RKGLLELRASGKHQ--PSQEGLT----LRLTISALEKADSDTYTCDI----GQAQSRAQL 91
Query: 89 N 89
Sbjct: 92 L 92
Score = 39.2 bits (92), Expect = 3e-04
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
E + + +K T V CK +VTW K ++ KH E
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE 59
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 68.2 bits (167), Expect = 3e-14
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P F + K + G ++C++ + + W + L+ R S + G +
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYS--LKQDGTRC- 62
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
L++ D D G Y C A LT+ RF +
Sbjct: 63 -ELQIHDLSVADAGEYSCMCGQERTS--ATLTVRALPARFTE 101
Score = 58.2 bits (141), Expect = 8e-11
Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ F + + G ++C+ S V+W K + +++ + +
Sbjct: 1 GSSGSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLK-- 56
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
+ E+ I D D+G Y C E ++A L + P F E
Sbjct: 57 QDGTRCELQ--IHDLSVADAGEYSCMCGQE--RTSATLTV--------RALPARFTEGSG 104
Score = 54.3 bits (131), Expect = 2e-09
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
RF + +G ++C E S + + W +G + + D GR + +D
Sbjct: 7 GPARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLK-----QDG 59
Query: 161 YLLRLEINNPTKDDGGNYRCNA 182
L+I++ + D G Y C
Sbjct: 60 TRCELQIHDLSVADAGEYSCMC 81
Score = 41.2 bits (97), Expect = 6e-05
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
L+ R S L QD +R L I ++ +D+GEY + + + TV
Sbjct: 41 KKGPETLRDGGRYS--LKQDGTR----CELQIHDLSVADAGEYSCMCGQERTSATLTVR 93
Score = 36.6 bits (85), Expect = 0.003
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
+ K S+ T ++C++ V W K T+++ ++ + +
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSK--VAPVEWKKGPETLRDGGRYSLKQD 58
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 67.4 bits (165), Expect = 4e-14
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
+ ++ GK + ++C++ W G +Q++DR+ V KG +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLK--VVQKGRIH- 61
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
+L + + ED G Y ++ L A + +
Sbjct: 62 -KLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93
Score = 53.5 bits (129), Expect = 3e-09
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 207 APSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
+ + + L KC KW K V+ES ++K++
Sbjct: 7 GLKILTPLTDQTVNLGKEICL-----KCEISENIPGKWTKNGLPVQESDRLKVVQK--GR 59
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299
++++ I + + D G Y A +++
Sbjct: 60 IHKLV--IANALTEDEGDYVFAPDAYNVTLPAKVHV 93
Score = 51.6 bits (124), Expect = 1e-08
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
G + G + ++C E S W + ++++ R+K+ +
Sbjct: 4 GSSGLKILTPLTDQTVNLGKEICLKC--EISENIPGKWTKNGLPVQESDRLKVVQ----- 56
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192
+ +L I N +D G+Y A
Sbjct: 57 KGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK 90
Score = 43.9 bits (104), Expect = 7e-06
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 2 TFPKELKSYT-LEGEPTK---QIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAV 57
L T G+ +I N G ++ SDRL +VQ
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRL--KVVQKGRI----HK 62
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
L I N D G+Y + ++
Sbjct: 63 LVIANALTEDEGDYVFA--PDAYNVTLPAKVHVIS 95
Score = 35.4 bits (82), Expect = 0.007
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
I T++ K + ++C++ W K V+E ++ V +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQK 57
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 66.7 bits (163), Expect = 5e-14
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P + + G L+ + C+++ + I W +G +L +++R + G+
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTR----ITGE--- 60
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+EV+D D+GLY C + G ++N+
Sbjct: 61 -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 60.6 bits (147), Expect = 9e-12
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 105 PRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
P + GDLL + C L I W + + ++ R +++ +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEE------- 61
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+E+ + D G Y C + G ++N
Sbjct: 62 --VEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 55.6 bits (134), Expect = 5e-10
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
+ + G L+Q++C+ + W + + ES++ +I
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE-------- 60
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
E+ D I DSG Y C + G ++N+
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 42.5 bits (100), Expect = 2e-05
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
+ +++ +DSG Y + + +G ++ ++N
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 36.7 bits (85), Expect = 0.002
Identities = 5/60 (8%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-----HIEQVK 509
+ + + + + + C++ S+ W+++ + E N+ + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 67.5 bits (165), Expect = 6e-14
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKY 369
PP + P ++ V+ C P+P I+W +G + D RI G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK--QLENGV-- 63
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
L+++ + DTG Y C GE + + ++
Sbjct: 64 ---LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 62.1 bits (151), Expect = 4e-12
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 13/120 (10%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ P + P + C + P P + W K LV +
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL- 59
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
++ +I D+G Y C GE+ + + ++ + ++ P+
Sbjct: 60 -ENGVL----QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ-------EFGVPVQPPR 107
Score = 61.7 bits (150), Expect = 6e-12
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 104 APRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKD 159
P + P T+ V+ CV SP+P I+W + G V RIK + +
Sbjct: 8 PPVIRQGPVNQTV-AVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV--- 63
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
L+I D G Y C A GE+ + + Q ++ PR
Sbjct: 64 -----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE-------FGVPVQPPR 107
Score = 43.6 bits (103), Expect = 1e-05
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
PVIR+ P T++ T V+ C P++ W K+ V + + +E
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE 60
Score = 42.8 bits (101), Expect = 3e-05
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 43 STLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVP 100
+ SR+ L VL I+ + D+G Y IA +GE + + ++V
Sbjct: 47 VLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSA---------YIEVQ 97
Query: 101 GGKAPRFPKKPT 112
P P +PT
Sbjct: 98 EFGVPVQPPRPT 109
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 67.6 bits (165), Expect = 6e-14
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 80 GEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-QDGDLLVMECVLEASPMPD-IIWY 137
G S+ L + P P T H G+ ++C + ++P PD I W
Sbjct: 1 GSSGSSGTLT-------VNGP----PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWS 49
Query: 138 QGTKVIE--DTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGESNANIA 194
V+E +GR + S + + L I+N + D Y C A NS G I
Sbjct: 50 WKENVLESGTSGRYTVETISTE-EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 108
Query: 195 LNFQGGE 201
L QG E
Sbjct: 109 LKEQGSE 115
Score = 64.9 bits (158), Expect = 6e-13
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 12/120 (10%)
Query: 291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEG 349
G S ++ L + PP + G K ++C +++ P P+ I W +
Sbjct: 1 GSSGSSGTLTVNG-------PPIISSTQTQHALHGEK-GQIKCFIRSTPPPDRIAWSWKE 52
Query: 350 KELQ--QTDRISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFHGELNANLTLNIE 406
L+ + R + + L + + + D +Y C N G + L +
Sbjct: 53 NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 62.6 bits (152), Expect = 3e-12
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTY 265
P I + G Q+KC + P P+ + W + +++ + + V
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 266 EIICE--ITDPIGPDSGT-YRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
+I I++ + D T Y C N FG + L + P +
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS--GPSS 121
Score = 43.7 bits (103), Expect = 1e-05
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD-SGEYKVIAKNKNGEGSSTVN 87
K ++L+ T+ + ++ LTI N+ ++D Y A N G + +
Sbjct: 49 SWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 108
Query: 88 L 88
L
Sbjct: 109 L 109
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 66.6 bits (163), Expect = 7e-14
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
F +KP+ G V E + + ++ W G ++ +++ + +G ++
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYG--LATEGTRH- 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L V++ D G Y + + +L
Sbjct: 64 -TLTVREVGPADQGSYAVIAGSSKVK--FDLK 92
Score = 51.2 bits (123), Expect = 1e-08
Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
+F +KPR + +G+ + + + +V+W + + S+K + + + +
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETE-RAGVKVRWQRGGSDISASNKYGLA--TEGTRHTL 65
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
+ + D G+Y + + +L
Sbjct: 66 T--VREVGPADQGSYAVIAGSS--KVKFDLK 92
Score = 48.1 bits (115), Expect = 2e-07
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 105 PRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
F KKP + G V E + W +G I + + ++ +
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLAT-----EGTR 62
Query: 163 LRLEINNPTKDDGGNYRCNA 182
L + D G+Y A
Sbjct: 63 HTLTVREVGPADQGSYAVIA 82
Score = 40.4 bits (95), Expect = 1e-04
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
GS + S++ L + +R LT++ V +D G Y VIA G +L
Sbjct: 42 QRGGSDISASNKYG--LATEGTR----HTLTVREVGPADQGSYAVIA----GSSKVKFDL 91
Query: 89 NFSE 92
E
Sbjct: 92 KVIE 95
Score = 37.7 bits (88), Expect = 0.001
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
V + P+ V ++ V E + V W + + + NK+ + E
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATE 59
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 69.3 bits (169), Expect = 1e-13
Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 33/226 (14%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPD-----IIWYQGTKVI---------------EDTG 147
PK + + G + +EC D + W K I
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
R ++ K + L+ I + D G YRC + G I +
Sbjct: 67 RARLLKDQLSLGNAALQ--ITDVKLQDAGVYRCMI-SYGGADYKRITVKVN-------AP 116
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
+ I + ++ + + ++ C+ P+ EV W +D V ++ + +
Sbjct: 117 YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV 176
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
+ + + C + E N L I P PP
Sbjct: 177 TSTLRINTT-TNEIFYCTFRRLDPEENHTAELVI--PELPLAHPPN 219
Score = 59.6 bits (144), Expect = 3e-10
Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 14/141 (9%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
A L I +V+ D+G Y+ + + +KV + +
Sbjct: 80 AALQITDVKLQDAGVYRCMISYG----------GADYKRITVKVNAPYNKINQRILVVDP 129
Query: 116 DGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ C E P ++IW +V+ SK+ L IN
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---TT 186
Query: 175 GGNYRCNACNSIGESNANIAL 195
+ C E N L
Sbjct: 187 NEIFYCTFRRLDPEENHTAEL 207
Score = 57.3 bits (138), Expect = 2e-09
Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 32/197 (16%)
Query: 231 CSAKPRPE-------VKWFKADKLVKESSKIKIIVNEQDDTY--------EIICE----- 270
C + V W DK + + + + Q +Y + +
Sbjct: 23 CKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAAL 82
Query: 271 -ITDPIGPDSGTYRCNVKN-EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
ITD D+G YRC + + +N P I + + +
Sbjct: 83 QITDVKLQDAGVYRCMISYGGADYKRITVKVN---------APYNKINQRILVVDPVTSE 133
Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ C+ + P E++W ++ + N + +++ ++ ++ C
Sbjct: 134 HELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR-INTTTNEIFYC 192
Query: 389 NIKNFHGELNANLTLNI 405
+ E N L I
Sbjct: 193 TFRRLDPEENHTAELVI 209
Score = 36.1 bits (83), Expect = 0.016
Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 38/186 (20%)
Query: 326 GKLVVMECKVKAKPMPE-----IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK 380
G + +ECK + + + W E K + Q ++ ++ Y R
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR-------- 67
Query: 381 EDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVN 440
L K + N L I V+ + G+ Y S
Sbjct: 68 --ARLLKDQLSL------GNAALQITDVKL------QDAGV-----------YRCMISYG 102
Query: 441 PQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNK 500
K + ++ +V + C+ + V W + V
Sbjct: 103 GADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKT 162
Query: 501 HVVHIE 506
+ +
Sbjct: 163 TTTNSK 168
Score = 28.8 bits (64), Expect = 3.8
Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 36 KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+S + ++T + + +L+ V + + + + + + + E + T L
Sbjct: 157 VLSGKTTTTNSKREEKLFN--VTSTLRINTTTNEIFYCTFRRLDPEENHTAEL 207
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 65.8 bits (161), Expect = 1e-13
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P F E K G + C + + P + W + L+ D+ S + +G
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYS--LRQEGAML- 63
Query: 371 IRLEVKDPRKEDTGLYKC 388
L V++ R +D+G Y C
Sbjct: 64 -ELVVRNLRPQDSGRYSC 80
Score = 54.3 bits (131), Expect = 2e-09
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
G +G+ F E + + G ++C S+ P VKW + +++ K +
Sbjct: 1 GSSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLR-- 57
Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
++ E++ + + DSG Y C+ ++ ++A L
Sbjct: 58 QEGAMLELV--VRNLRPQDSGRYSCSFGDQ--TTSATLT 92
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
RF + +G + CVL + P + W G V+ + + + +
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EG 60
Query: 161 YLLRLEINNPTKDDGGNYRCNA 182
+L L + N D G Y C+
Sbjct: 61 AMLELVVRNLRPQDSGRYSCSF 82
Score = 38.1 bits (89), Expect = 0.001
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ ++L+ D+ S L Q+ + L ++N++ DSG Y G+ +++ L
Sbjct: 42 CYGNNVLRPGDKYS--LRQEGAM----LELVVRNLRPQDSGRYSCSF----GDQTTSATL 91
Query: 89 N 89
Sbjct: 92 T 92
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 65.5 bits (160), Expect = 2e-13
Identities = 17/95 (17%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 311 PPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
P I P+ + + VV+ C++ ++ W+ +G+++++++ + V + G
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLV--VKMDGR 63
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
K+ RL + + + +D+G ++C + +T
Sbjct: 64 KH--RLILPEAKVQDSGEFECRTEGVSAF--FGVT 94
Score = 56.3 bits (136), Expect = 4e-10
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 207 APSFIEKPRIIPN---ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
P I P+ + + + + C+ S + W+K + V+ES + +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELS-RVDFPATWYKDGQKVEESELLVVK--MDGR 63
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
+ +I + + DSG + C + + +
Sbjct: 64 KHRLI--LPEAKVQDSGEFECRTEGV--SAFFGVT 94
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 104 APRFPKKPTIHQD-----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
P P + +V+ C L + WY+ + +E++ + +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM----- 60
Query: 159 DTYLLRLEINNPTKDDGGNYRCNA 182
D RL + D G + C
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRT 84
Score = 40.8 bits (96), Expect = 9e-05
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
Y G ++ S+ L + D + L + + DSGE++ + + TV
Sbjct: 44 YKDGQKVEESELLV--VKMDGRK----HRLILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96
Score = 35.1 bits (81), Expect = 0.010
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
V + + +T + + VV+ C++ S + TW K+ V+E VV ++
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMD 61
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 65.8 bits (161), Expect = 2e-13
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 288 NEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347
+ + L + A P F E + G V+ C++ M + W+
Sbjct: 2 SSGSSGRTSAMLTVRAL------PIKFTEGLRNEEATEGATAVLRCELS--KMAPVEWWK 53
Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ L+ DR S + G + L+++ ED G Y C
Sbjct: 54 GHETLRDGDRHS--LRQDGARC--ELQIRGLVAEDAGEYLC 90
Score = 59.3 bits (144), Expect = 4e-11
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 77 NKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDI 134
+ G ++ L +F + +G V+ C E S M +
Sbjct: 2 SSGSSGRTSAMLTVRA----------LPIKFTEGLRNEEATEGATAVLRC--ELSKMAPV 49
Query: 135 IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
W++G + + D R + +D L+I +D G Y C
Sbjct: 50 EWWKGHETLRDGDRHSLR-----QDGARCELQIRGLVAEDAGEYLCMC 92
Score = 51.6 bits (124), Expect = 2e-08
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
F E R G ++C+ S V+W+K + +++ + + D
Sbjct: 19 PIKFTEGLRNEEATEGATAVLRCELS--KMAPVEWWKGHETLRDGDRHSLR----QDGAR 72
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
+I + D+G Y C E ++A L
Sbjct: 73 CELQIRGLVAEDAGEYLCMCGKE--RTSAMLT 102
Score = 39.7 bits (93), Expect = 3e-04
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ L+ DR +L QD +R L I+ + D+GEY + G+ ++ L
Sbjct: 52 WKGHETLRDGDRH--SLRQDGAR----CELQIRGLVAEDAGEYLCMC----GKERTSAML 101
Query: 89 N 89
Sbjct: 102 T 102
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 450 TLSVV---PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
L+V E + ++ T V+ C++ V W K T+++ ++H +
Sbjct: 12 MLTVRALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDGDRHSL 66
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 66.4 bits (162), Expect = 4e-13
Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 39/201 (19%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
+P I + + C+ + P + ++WF L+ ++ ++
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN--- 61
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
DSG Y C +L + ++ P + ++G
Sbjct: 62 -----------DSGEYTCQTGQTSLSDPVHLTVLF---------EWLVLQTPHLEFQEG- 100
Query: 327 KLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ +++ C KP+ ++ +F GK + + + I +G
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------LDPTFSIP----QANHSHSGD 148
Query: 386 YKCNIKNFHGELNAN-LTLNI 405
Y C + ++ +T+ +
Sbjct: 149 YHCTGNIGYTLFSSKPVTITV 169
Score = 64.5 bits (157), Expect = 2e-12
Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 50/206 (24%)
Query: 108 PKKPTI--------HQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGK 158
P K + D + + C SP D I W+ +I +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------- 51
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
+D G Y C + + L F ++ P +
Sbjct: 52 -----PSYRFKANNNDSGEYTCQTGQTSLSDPVH--LTVL-------FEWLVLQTPHLEF 97
Query: 219 NESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
E G I ++C KP +V +F+ K K S D T+ I
Sbjct: 98 QE-GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------LDPTFSI-----PQANH 143
Query: 278 -DSGTYRCNVKNEFGESNAN-LNLNI 301
SG Y C + ++ + + +
Sbjct: 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 62.5 bits (152), Expect = 1e-11
Identities = 22/136 (16%), Positives = 36/136 (26%), Gaps = 26/136 (19%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
+DSGEY S V+L E L+ P Q+G
Sbjct: 53 SYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVLQTP----------HLEFQEG 100
Query: 118 DLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
+ +++ C + ++Q K K D I G
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQ----------KFSHLDP---TFSIPQANHSHSG 147
Query: 177 NYRCNACNSIGESNAN 192
+Y C ++
Sbjct: 148 DYHCTGNIGYTLFSSK 163
Score = 37.1 bits (86), Expect = 0.006
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSS-TVNLN 89
+I S SG+Y SS V +
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT 168
Score = 35.6 bits (82), Expect = 0.019
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNKHVVHIE 506
V++ P + + ++ +V + C+ E S+ W N + + +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFK 57
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 68.4 bits (166), Expect = 5e-13
Identities = 36/255 (14%), Positives = 74/255 (29%), Gaps = 57/255 (22%)
Query: 117 GDLLVMECVL---EASPMPDIIWY--QGTKVIEDTGRIKMSKKSIGKDTYLLR------- 164
G+ ++M CV+ E + + W + + S S+ + R
Sbjct: 20 GESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDT 79
Query: 165 ------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
L + + K D G Y C + E+PR +
Sbjct: 80 FHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW----------VLPEEPRDLR 129
Query: 219 NESGTLIQMKCKCSAKPRPE---VKWFKADK-------LVKESSKIKIIVNEQDDTYEII 268
G QM+C + V W + ++ S ++ + +
Sbjct: 130 VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNR 189
Query: 269 CEITDPIGP-------------DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315
++T I D G Y C++ ES + L++ +
Sbjct: 190 VDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD------EFQRT 243
Query: 316 EKPKIRSEQGGKLVV 330
P +++G + ++
Sbjct: 244 ISPTPPTDKGQQGIL 258
Score = 65.3 bits (158), Expect = 5e-12
Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 34/176 (19%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
L +++VQK+D G Y + KN + +L V P P+ +
Sbjct: 84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV-------ELWVL----PEEPRDLRVRV 132
Query: 116 DGDLLVMECVLEASPMPDII---WY--QGTKVIEDTGRIKMSKKSIGKDTYLLR------ 164
GD M C ++++ + W G+ E+T S GK L R
Sbjct: 133 -GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191
Query: 165 -----------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPS 209
+++ + D G Y C+ ES I L+ E +P+
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPT 247
Score = 65.3 bits (158), Expect = 6e-12
Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 52/240 (21%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSA---KPRPEVKWFK-------ADKLVKESSKIKII 257
P + G + M C K V W ++ ++ S + +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 258 VNEQDDTYEIICE---------ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
+ ++ + + D D G Y C ++ + + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV----- 120
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE---IVWFHEGKELQQTDRISW----- 360
E+P+ + G M C +++ + W + + +
Sbjct: 121 -----LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNM 175
Query: 361 -------------NVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
V L GD ++++ ++ D G+Y C+I E + L++
Sbjct: 176 RSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
Score = 53.3 bits (127), Expect = 5e-08
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKA---KPMPEIVWFHEGKELQQTDRISW---NVTL 364
P G+ V+M C V+ K + + W + ++ + + N+++
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 365 KGDKYHIR-------------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
++ R L ++D +K D G+Y C I+ + + + + ++
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 412 KYRVRSNKG 420
+R G
Sbjct: 125 PRDLRVRVG 133
Score = 31.4 bits (70), Expect = 0.63
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMY---EPSVTWMKEKNTVKEDNKHVVHIEQVK 509
+P + + + ++V++ C V V W+ K+ + + +
Sbjct: 4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 510 DVSMNFE---LWLGIVEKRGPSIKI 531
+ F+ +G S+ +
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLL 88
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 63.9 bits (156), Expect = 6e-13
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
++ + + G+ V +EC+V ++ + WF G+E+ ++ +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGP--KSRYRIRVEGKK 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L ++ K D Y A L+
Sbjct: 64 HILIIEGATKADAAEYSVMTTGGQSS--AKLS 93
Score = 51.6 bits (124), Expect = 1e-08
Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
++ G ++++C+ S + VKWFK + + K + + + +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
+I I D+ Y G+S+A L+++ ++ P
Sbjct: 66 LI--IEGATKADAAEYSVMTTG--GQSSA--KLSVDLKSGP 100
Score = 46.9 bits (112), Expect = 6e-07
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--EDTGRIKMSKKSI 156
G K+ T G+ + +EC + + ++ W++ + I R ++
Sbjct: 4 GSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV--- 59
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI 193
+ L I TK D Y G+S+A +
Sbjct: 60 --EGKKHILIIEGATKADAAEYSVMTTG--GQSSAKL 92
Score = 39.6 bits (93), Expect = 2e-04
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
+ G + + + + + +L I+ K+D+ EY V+ +V+L
Sbjct: 41 FKNGEEIIPGPKSRYRIRVEGKK----HILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 96
Score = 33.8 bits (78), Expect = 0.022
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
++ + + T + V +EC+V S + +V W K + K I
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV 59
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 64.4 bits (157), Expect = 6e-13
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD---RIS 359
E PP +E P G+ + CK + +P P I W+ G+ ++ R
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 360 WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL---NANLTLN 404
+ G + +R+ + D G+Y C +N+ GE +A+L +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
Score = 57.9 bits (140), Expect = 1e-10
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD-- 159
PR + P I G+ + C E P P I WY+G + +E S + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQG 199
+ LR+ ++ D G Y C A N +GE+ + + +L
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 54.0 bits (130), Expect = 3e-09
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK---IIVNEQD 262
F P +E P + G + CK +P P ++W+K + V+ ++
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEA 303
+ + PD G Y C +N GE+ +A+L + A
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
Score = 38.3 bits (89), Expect = 8e-04
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
S+ P I E P + +SK + + CK P++ W K V+ D
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
Score = 28.6 bits (64), Expect = 2.3
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 19/100 (19%)
Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMS--DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70
EG PT IE Y G ++ D S ++ L++L ++ + + D G
Sbjct: 34 EGRPTPTIE------WYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGR-KSRPDEGV 86
Query: 71 YKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK 110
Y +A+N GE S L+V A
Sbjct: 87 YVCVARNYLGEAVSHD--------ASLEVAA--AAHHHHH 116
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 64.0 bits (156), Expect = 7e-13
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 311 PPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
F ++ E G + C+V A+ E+ W+ +GK+L + ++ V G
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVR--VEAVGC 64
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
RL V+ + + G Y C L
Sbjct: 65 TR--RLVVQQAGQAEAGEYSCEAGGQQLS--FRLQ 95
Score = 57.0 bits (138), Expect = 2e-10
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 104 APRFPKKPTIHQD-----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
F K+ H++ G + C + A ++ WY+ K + + ++++
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEA----- 61
Query: 159 DTYLLRLEINNPTKDDGGNYRCNA 182
RL + + + G Y C A
Sbjct: 62 VGCTRRLVVQQAGQAEAGEYSCEA 85
Score = 52.8 bits (127), Expect = 5e-09
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 200 GENGAGFAPSFIEKPRIIPN---ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI 256
G +G+ F ++ E+G + C+ + + + EV W+K K + SSK+++
Sbjct: 1 GSSGSSGKVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRV 59
Query: 257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA 305
T ++ + ++G Y C G + L + +
Sbjct: 60 E--AVGCTRRLV--VQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100
Score = 39.7 bits (93), Expect = 2e-04
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
Y G L S ++ + L ++ ++++GEY A + V
Sbjct: 45 YKDGKKLSSSSKV--RVEAVGCT----RRLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 37.4 bits (87), Expect = 0.002
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
V + + V + + C+V + + VTW K+ + +K V
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAV 62
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 65.5 bits (159), Expect = 2e-12
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 17/138 (12%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSS-TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
L + + D G Y + ++N + TV P T ++
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRF--------HVHQPVTQPFLQVTNTTVKE 124
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
D + + C+ +I W ++ ++ T R+ +S+ L I+ ++D G
Sbjct: 125 LDSVTLTCLSN-DIGANIQWLFNSQSLQLTERMTLSQ---NNSI----LRIDPIKREDAG 176
Query: 177 NYRCNACNSIGESNANIA 194
Y+C N + +N
Sbjct: 177 EYQCEISNPVSVRRSNSI 194
Score = 57.4 bits (138), Expect = 1e-09
Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 28/205 (13%)
Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY-------E 266
P++ + + L+ W+K + + + + N + E
Sbjct: 9 PQVAEDNNVLLL---VHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65
Query: 267 IICE-----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIR 321
II D G Y ++ +E +
Sbjct: 66 IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA-----TVRFHVHQPVTQPFLQVTNT 120
Query: 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
+ + V + C I W + LQ T+R+ TL + L + ++E
Sbjct: 121 TVKELDSVTLTCLSN-DIGANIQWLFNSQSLQLTERM----TLSQNNSI--LRIDPIKRE 173
Query: 382 DTGLYKCNIKNFHGELNAN-LTLNI 405
D G Y+C I N +N + L+I
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 43.1 bits (101), Expect = 7e-05
Identities = 11/109 (10%), Positives = 28/109 (25%), Gaps = 12/109 (11%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW----NVTLKGDKYHIR--------L 373
V++ + W+ + + N+ G Y R L
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIV 422
+ +D G+Y ++ + + + ++ V
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTV 122
Score = 39.3 bits (91), Expect = 0.001
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS-TVN 87
L++++R+ TL Q+ S +L I +++ D+GEY+ N S ++
Sbjct: 144 LFNSQSLQLTERM--TLSQNNS------ILRIDPIKREDAGEYQCEISNPVSVRRSNSIK 195
Query: 88 LN 89
L+
Sbjct: 196 LD 197
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 61.6 bits (150), Expect = 4e-12
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 311 PPTFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
F + P + ++GG+ V ++ A P E+ W+ G+E++ + + KG +
Sbjct: 7 GAAFAKILDPAYQVDKGGR-VRFVVEL-ADPKLEVKWYKNGQEIRPSTKYI--FEHKGCQ 62
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKN 392
L + + + D Y +
Sbjct: 63 R--ILFINNCQMTDDSEYYVTAGD 84
Score = 54.7 bits (132), Expect = 1e-09
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 101 GGKAPRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
G F K G + L A P ++ WY+ + I + +
Sbjct: 4 GSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFE----- 57
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNA 182
L INN D Y A
Sbjct: 58 HKGCQRILFINNCQMTDDSEYYVTA 82
Score = 52.4 bits (126), Expect = 7e-09
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 207 APSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
+F + + G ++ + + P+ EVKW+K + ++ S+K +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFE--HKGCQR 63
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
+ I + D Y +E + + L
Sbjct: 64 ILF--INNCQMTDDSEYYVTAGDE--KCSTELF 92
Score = 37.0 bits (86), Expect = 0.002
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
Y G ++ S + + +L I N Q +D EY V A ++ V
Sbjct: 42 YKNGQEIRPSTKY--IFEHKGCQ----RILFINNCQMTDDSEYYVTAGDEKCSTELFV 93
Score = 36.2 bits (84), Expect = 0.003
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDV 511
S + + + K V ++ + + V W K ++ K E
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTK--YIFEHKGCQ 62
Query: 512 S 512
Sbjct: 63 R 63
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 63.7 bits (155), Expect = 4e-12
Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 39/200 (19%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
+P+ + +KC+ + P +WF + L+ + I +
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVN--- 64
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
DSG YRC L ++ ++ P+ ++
Sbjct: 65 -----------DSGEYRCQTNLSTLSDPVQLEVH---------IGWLLLQAPRWVFKEE- 103
Query: 327 KLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ + C ++ + GK+ + +HI +D+G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHIP----KATLKDSGS 151
Query: 386 YKCNIKNFHGELNANLTLNI 405
Y C +++ T+NI
Sbjct: 152 YFCRGLVGSKNVSSE-TVNI 170
Score = 61.0 bits (148), Expect = 4e-11
Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 44/201 (21%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P+ ++ + D + ++C SP + W+ +I
Sbjct: 14 PQWYSVLE-KDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS---------------SYF 57
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
I+ T +D G YRC S L ++ PR + E I
Sbjct: 58 IDAATVNDSGEYRCQTNLSTLSDPVQ--LEVH-------IGWLLLQAPRWVFKE-EDPIH 107
Query: 227 MKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRC 284
++C +V + + K K + + I DSG+Y C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHI-----PKATLKDSGSYFC 154
Query: 285 NVKNEFG-ESNANLNLNI-EA 303
S+ +N+ I +A
Sbjct: 155 RGLVGSKNVSSETVNITITQA 175
Score = 57.2 bits (138), Expect = 8e-10
Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 26/132 (19%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
I +DSGEY+ S V L L+ P + ++
Sbjct: 56 YFIDAATVNDSGEYRCQT--NLSTLSDPVQLEVHIGWLLLQAP----------RWVFKEE 103
Query: 118 DLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
D + + C + + + Q K + I T D G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD-------------FHIPKATLKDSG 150
Query: 177 NYRCNACNSIGE 188
+Y C
Sbjct: 151 SYFCRGLVGSKN 162
Score = 39.9 bits (93), Expect = 7e-04
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 17/96 (17%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV-WFHEGKELQQTDRISWNVTLKGDKY 369
+P+ S V ++C+ P WFH +
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS------------ 54
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ D+G Y+C L+ + L +
Sbjct: 55 --SYFIDAATVNDSGEYRCQTNL--STLSDPVQLEV 86
Score = 37.9 bits (88), Expect = 0.003
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNG-EGSSTVNLNFSE 92
I DSG Y + S TVN+ ++
Sbjct: 139 FHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174
Score = 31.8 bits (72), Expect = 0.33
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNK 500
V+ P+ ++ +K +V ++C+ E S W ++ +
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS 54
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 63.8 bits (155), Expect = 5e-12
Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 50/206 (24%)
Query: 108 PKKPTI--------HQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGK 158
P+KP + G+ + + C W+ + E+T
Sbjct: 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------- 51
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
L I N +D G Y+C + + ++ +
Sbjct: 52 -----SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSD---------WLLLQASAEVV 97
Query: 219 NESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
E G + ++C +V ++K + +K ++ I
Sbjct: 98 ME-GQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISI-----TNATV 143
Query: 278 -DSGTYRCNVKNEFGESNAN-LNLNI 301
DSGTY C K + + LN+ +
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 62.6 bits (152), Expect = 1e-11
Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 39/201 (19%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
P P G + + C + KWF L +E++ IVN + +
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFE--- 61
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
DSG Y+C + L + D ++ E G
Sbjct: 62 -----------DSGEYKCQHQQVNESEPVYLEVFS--------DWLLLQASAEVVME--G 100
Query: 327 KLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ + + C + +++++ +G+ L+ + I + ED+G
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISIT----NATVEDSGT 148
Query: 386 YKCNIKNFHGELNAN-LTLNI 405
Y C K + + + L + +
Sbjct: 149 YYCTGKVWQLDYESEPLNITV 169
Score = 56.8 bits (137), Expect = 1e-09
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 26/138 (18%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L I N + DSGEYK + S V L + L+ + +G
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLLQAS----------AEVVMEG 100
Query: 118 DLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
L + C + + +I+Y+ + ++ + I N T +D G
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH-------------NISITNATVEDSG 147
Query: 177 NYRCNACNSIGESNANIA 194
Y C + +
Sbjct: 148 TYYCTGKVWQLDYESEPL 165
Score = 38.0 bits (88), Expect = 0.003
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSS-TVNLN 89
++I N DSG Y K + S +N+
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168
Score = 31.8 bits (72), Expect = 0.29
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDN 499
P + P I K + V + C + +E S W + +E N
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN 50
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 61.3 bits (149), Expect = 5e-12
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
+ +P+ + G V + C+V A+P P+I W +G L
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV----------- 58
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHG--ELNANLTLNI 405
L + + +D G Y C + + + ++++I
Sbjct: 59 --LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 53.2 bits (128), Expect = 3e-09
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
+ +P G + + C+ A+P P++ W K +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLI 60
Query: 267 IICEITDPIGP-DSGTYRCNVKNEFG--ESNANLNLNI 301
+ IGP D GTY C + + + ++++I
Sbjct: 61 L-----PEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 51.3 bits (123), Expect = 1e-08
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 16/95 (16%)
Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
+ +P G + + C + A P P I W + D + + +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK------DGVPLPLPPSPV----- 58
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L + D G Y C A +S + A++
Sbjct: 59 ---LILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
Score = 43.2 bits (102), Expect = 1e-05
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
+ P+ ++ TV + C+V + P + WMK+ + V+ + ++
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIG 65
Score = 39.3 bits (92), Expect = 2e-04
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
VL + + D G Y +A + + + ++
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 60.8 bits (148), Expect = 5e-12
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
G +P + G +V++C P+P WF L +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
V E G Y C++ N ++
Sbjct: 52 ----YMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 55.0 bits (133), Expect = 7e-10
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 18/97 (18%)
Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGK 158
G + +PT G LV++CV SP+P W++ + +T ++
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
+ + G Y C+ N ++
Sbjct: 52 ------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
Score = 49.3 bits (118), Expect = 7e-08
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
+P G+ + ++C P P +WFK + + +K +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM---------- 53
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNAN 296
+ GTY C+V N+ ++
Sbjct: 54 ---VPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 41.9 bits (99), Expect = 3e-05
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
I P + T+V++C + P W K + + + K + + V
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVD 58
Score = 41.2 bits (97), Expect = 5e-05
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLNFSE 92
+ + V G Y N S V + E
Sbjct: 50 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 61.2 bits (149), Expect = 7e-12
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 311 PPTFIEK-PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
F +K G + + ++ A E+ W G+E+Q + +
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGS---KYIFESIGA 70
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
L + D Y+C + L
Sbjct: 71 KRTLTISQCSLADDAAYQCVVGGEKCS--TELF 101
Score = 49.7 bits (119), Expect = 7e-08
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 207 APSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
+ +F +K G I++ + + EVKW K + ++ S K I
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGS-KYIFESIGAKR 72
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
+ I+ D Y+C V E + + L
Sbjct: 73 TLT--ISQCSLADDAAYQCVVGGE--KCSTELF 101
Score = 48.5 bits (116), Expect = 2e-07
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 103 KAPRFPKKPTIHQ---DGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGK 158
K+ F KK G + + L A ++ W + G ++ +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES----- 67
Query: 159 DTYLLRLEINNPTKDDGGNYRCNA 182
L I+ + D Y+C
Sbjct: 68 IGAKRTLTISQCSLADDAAYQCVV 91
Score = 40.0 bits (94), Expect = 2e-04
Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 446 YSVLTLSV---VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
+ ++ +++ +SK + + ++ + ++ V W+K ++
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKY 63
Query: 503 VHIEQ 507
+
Sbjct: 64 IFESI 68
Score = 38.1 bits (89), Expect = 9e-04
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
G ++MS R LTI +D Y+ + + V
Sbjct: 50 LKNGQEIQMSGSKYIFESIGAKR-----TLTISQCSLADDAAYQCVVGGEKCSTELFV 102
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 62.3 bits (151), Expect = 1e-11
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 32/139 (23%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
LTI N+ SD EY++ + N + L E V KP I+ +
Sbjct: 62 LTIYNLTSSDEDEYEMESPNIT--DTMKFFLYVLE-----MVS---------KPMIYWEC 105
Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
+ C + ++ YQG + + + ++ +
Sbjct: 106 SNATLTCEVLEGTDVELKLYQGKEHLRSLR----------------QKTMSYQWTNLRAP 149
Query: 178 YRCNACNSIGESNANIALN 196
++C A N + + + +N
Sbjct: 150 FKCKAVNRVSQESEMEVVN 168
Score = 61.1 bits (148), Expect = 3e-11
Identities = 21/177 (11%), Positives = 51/177 (28%), Gaps = 34/177 (19%)
Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL-----RLEINNPTKDDGGNYRCNAC 183
P+ +++W + + + + S K+ L L I N T D Y +
Sbjct: 21 VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80
Query: 184 NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK 243
N + + + KP I + + C+ E+K ++
Sbjct: 81 NITDTMKFFLYV----------LEM--VSKPMI--YWECSNATLTCEVLEGTDVELKLYQ 126
Query: 244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300
+ ++ + + + ++C N + + +N
Sbjct: 127 GKEHLRSLRQKTMSYQWTNL---------------RAPFKCKAVNRVSQESEMEVVN 168
Score = 47.6 bits (113), Expect = 1e-06
Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 35/176 (19%)
Query: 235 PRPEVKWFKADKLVKE--SSKIKIIVNEQDDTYEIIC----EITDPIGPDSGTYRCNVKN 288
P EV W K V E +S+ + + ++ Y I + D Y N
Sbjct: 22 PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81
Query: 289 EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE 348
L + + + KP I E + C+V E+ +
Sbjct: 82 ITDTMKFFLYVL---------EMVS---KPMIYWECSN--ATLTCEVLEGTDVELKLYQG 127
Query: 349 GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404
+ L+ + + +KC N + + +N
Sbjct: 128 KEHLRSLRQ---------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
Score = 38.4 bits (89), Expect = 0.002
Identities = 17/191 (8%), Positives = 43/191 (22%), Gaps = 60/191 (31%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQ--TDRISWNVTLKGDKYHIR----LEVKDPR 379
V P+ E++W + ++ + + K Y L + +
Sbjct: 10 YGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
D Y+ N + L
Sbjct: 69 SSDEDEYEMESPNITDTMKFFLY------------------------------------- 91
Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
V+ V K + + + C+V+ + + + K ++
Sbjct: 92 ----------------VLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR 135
Query: 500 KHVVHIEQVKD 510
+ + +
Sbjct: 136 QKTMSYQWTNL 146
Score = 33.4 bits (76), Expect = 0.10
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 38 SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
+ L Q + L L T+ + +K A N+ + S +N E
Sbjct: 117 GTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCPE 171
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 61.3 bits (148), Expect = 1e-11
Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 30/131 (22%)
Query: 305 AEPEGDPPTFIEKPKIRSEQG-----GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS 359
+PP R G + ++ + P P ++W + +
Sbjct: 7 HSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARP 66
Query: 360 WN-------------------------VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
V ++ K V+ KED G+Y +KN
Sbjct: 67 APDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPV 126
Query: 395 GELNANLTLNI 405
GE NLT+ +
Sbjct: 127 GEDQVNLTVKV 137
Score = 52.8 bits (126), Expect = 1e-08
Identities = 21/119 (17%), Positives = 31/119 (26%), Gaps = 25/119 (21%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
P I +G +++ S P P V W KA ++ +D
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 78
Query: 268 ICEITDPIGP-------------------------DSGTYRCNVKNEFGESNANLNLNI 301
+ D G Y VKN GE NL + +
Sbjct: 79 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 48.6 bits (115), Expect = 3e-07
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 35/128 (27%)
Query: 98 KVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTK---------------- 141
K+ R P + G+ L ++ + P P +IW +
Sbjct: 15 KIHLDCPGRIPDTIVV-VAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 142 -------------VIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
+ E GR+++ + K+D G Y N +GE
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTK-----DRSIFTVEGAEKEDEGVYTVTVKNPVGE 128
Query: 189 SNANIALN 196
N+ +
Sbjct: 129 DQVNLTVK 136
Score = 48.2 bits (114), Expect = 5e-07
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 54 YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
++ T++ +K D G Y V KN GE + +
Sbjct: 101 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 32.0 bits (72), Expect = 0.17
Identities = 5/51 (9%), Positives = 15/51 (29%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
+ +P + + + ++ + P+V W K +
Sbjct: 18 LDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAP 68
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 66.0 bits (161), Expect = 1e-11
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 201 ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260
+ + P FI KP G C+ A P V W K D+ +K+S K N
Sbjct: 476 WDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN- 534
Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
+ Y + I G D G Y KN +G + LN+
Sbjct: 535 -GNDYGLT--INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 64.5 bits (157), Expect = 4e-11
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 302 EAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361
+A + P FI KP G+ C+V A P + W + +EL+Q+ +
Sbjct: 473 DAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK---- 528
Query: 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ + L + + +D G Y KN +G + LN+
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 54.1 bits (130), Expect = 8e-08
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+G C + AS P + W++ + ++ + + + L IN DD
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY-----NGNDYGLTINRVKGDD 549
Query: 175 GGNYRCNACNSIGESNANIALN 196
G Y A NS G + LN
Sbjct: 550 KGEYTVRAKNSYGTKEEIVFLN 571
Score = 44.8 bits (106), Expect = 5e-05
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
LTI V+ D GEY V AKN G V LN
Sbjct: 537 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 36.7 bits (85), Expect = 0.019
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 407 MVRFIKYRVRSNKGIVGKMG-LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVT 465
+ IK + + + +G + S + + P P
Sbjct: 434 IRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTE 493
Query: 466 ISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
+ + ++ C+V++ P VTW K+ +K+ K+
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY 529
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 61.4 bits (149), Expect = 3e-11
Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 31/139 (22%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L I NV K D G+Y + ++ + + E KP I+ +
Sbjct: 71 LRIYNVSKEDRGDYYMRMLHETE-DQWKITMEVYEM--------------VSKPMIYWEC 115
Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
+ C + ++ YQG + + + MS + +
Sbjct: 116 SNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW----------------TNLRAP 159
Query: 178 YRCNACNSIGESNANIALN 196
++C A N + + + +N
Sbjct: 160 FKCKAVNRVSQESEMEVVN 178
Score = 53.0 bits (127), Expect = 3e-08
Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 42/180 (23%)
Query: 132 PDIIWYQG--TKVIEDTGRIKMSKKSIGKDTYLLR---------LEINNPTKDDGGNYRC 180
+ W K++E KK++ + + R L I N +K+D G+Y
Sbjct: 30 QRLTWLHTTNQKILE---YFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86
Query: 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVK 240
+ E I + + + KP I + + C+ E+K
Sbjct: 87 RMLHE-TEDQWKITMEV--------YEM--VSKPMIYWE--CSNATLTCEVLEGTDVELK 133
Query: 241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300
++ + ++ + + + ++C N + + +N
Sbjct: 134 LYQGKEHLRSLRQKTMSYQWTN---------------LRAPFKCKAVNRVSQESEMEVVN 178
Score = 44.1 bits (104), Expect = 2e-05
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 32/129 (24%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
D G Y + +E E + + + + KP I E + C+V
Sbjct: 80 DRGDYYMRMLHE-TEDQWKITMEVYEM----------VSKPMIYWE--CSNATLTCEVLE 126
Query: 338 KPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
E+ + + L+ + +S+ T +KC N
Sbjct: 127 GTDVELKLYQGKEHLRSLRQKTMSYQWT-----------------NLRAPFKCKAVNRVS 169
Query: 396 ELNANLTLN 404
+ + +N
Sbjct: 170 QESEMEVVN 178
Score = 36.8 bits (85), Expect = 0.007
Identities = 17/195 (8%), Positives = 44/195 (22%), Gaps = 62/195 (31%)
Query: 326 GKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEV--------- 375
G V + + W H + + T+ + R+++
Sbjct: 14 GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRI 73
Query: 376 KDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHR 435
+ KED G Y + + +
Sbjct: 74 YNVSKEDRGDYYMRMLHETED---------------------------------QWKIT- 99
Query: 436 DFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTV 495
+ V V K + + + C+V+ + + + K +
Sbjct: 100 ------------------MEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL 141
Query: 496 KEDNKHVVHIEQVKD 510
+ + + +
Sbjct: 142 RSLRQKTMSYQWTNL 156
Score = 29.9 bits (67), Expect = 1.6
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 47 QDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
Q + L L T+ + +K A N+ + S +N
Sbjct: 136 QGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 178
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 60.7 bits (146), Expect = 6e-11
Identities = 28/190 (14%), Positives = 55/190 (28%), Gaps = 46/190 (24%)
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
SGT +++ C +KW K + + + +++ + + DSG
Sbjct: 13 SGTSVELTC--PLDSDENLKWEKNGQELPQKHDKHLVLQDFSEV------------EDSG 58
Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGD------------------PPTFIEKPKIRS 322
Y C + L + + + + D ++
Sbjct: 59 YYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118
Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
+G V++ C + I W +G + + L KDPR
Sbjct: 119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNLGN-------NAKDPR--- 165
Query: 383 TGLYKCNIKN 392
G Y+C
Sbjct: 166 -GTYQCQGAK 174
Score = 48.7 bits (115), Expect = 9e-07
Identities = 19/150 (12%), Positives = 35/150 (23%), Gaps = 32/150 (21%)
Query: 58 LTIKNV-QKSDSGEYKVIAKNKNGEGSSTVNLNFSE----------------EDGKLKVP 100
L +++ + DSG Y N + +D K
Sbjct: 46 LVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGS 105
Query: 101 GGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
+ + + +++ C I W + +I K
Sbjct: 106 QTNKAKNLVQVDGSRGDGSVLLTCG---LTDKTIKWLKDGSIISPLNATKN--------- 153
Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESN 190
+ N KD G Y+C
Sbjct: 154 ---TWNLGNNAKDPRGTYQCQGAKETSNPL 180
Score = 46.8 bits (110), Expect = 3e-06
Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 43/194 (22%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G + + C L+ ++ W + + + + + + +D G
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSE-------------VEDSG 58
Query: 177 NYRCNACNS--------------IGESNANIALNFQGGENGAG--FAPSFIEKPRIIPNE 220
Y C S ++ + A ++ A + + K + +
Sbjct: 59 YYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
S + C +KW K ++ + K T+ + DP G
Sbjct: 119 SRGDGSVLLTCGL-TDKTIKWLKDGSIISPLNATKN-------TWNLGNNAKDP----RG 166
Query: 281 TYRCNVKNEFGESN 294
TY+C E
Sbjct: 167 TYQCQGAKETSNPL 180
Score = 34.5 bits (78), Expect = 0.046
Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 40/177 (22%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD-PRKEDTG 384
G V + C + + W G+EL K+ L ++D ED+G
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELP-------------QKHDKHLVLQDFSEVEDSG 58
Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
Y C + N N L + K VG K + +D + K
Sbjct: 59 YYVC----YTPASNKNTYLYL-------------KARVGSADDAKKDAAKKDDAKKDDAK 101
Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
K T ++ +V +V++ C + ++ W+K+ + + N
Sbjct: 102 KDGSQTNKAKNLV----QVDGSRGDGSVLLTCGLTD---KTIKWLKDGSIISPLNAT 151
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 59.5 bits (144), Expect = 2e-10
Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 42/188 (22%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P+ + + D + ++C SP W+ +I
Sbjct: 14 PQWYRVLE-KDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS---------------SYF 57
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
I+ T DD G YRC S S+ + L ++ PR + E I
Sbjct: 58 IDAATVDDSGEYRCQTQLSTL-SDP-VQLEVH-------IGWLLLQAPRWVFKE-EDPIH 107
Query: 227 MKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRC 284
++C +V + + K K + + I DSG+Y C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKYFH--------HNSDFYI-----PKATLKDSGSYFC 154
Query: 285 NVKNEFGE 292
Sbjct: 155 RGLVGSKN 162
Score = 58.0 bits (140), Expect = 6e-10
Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 26/132 (19%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
I DSGEY+ + S V L L+ P + ++
Sbjct: 56 YFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAP----------RWVFKEE 103
Query: 118 DLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
D + + C + + + Q K + I T D G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNS-------------DFYIPKATLKDSG 150
Query: 177 NYRCNACNSIGE 188
+Y C
Sbjct: 151 SYFCRGLVGSKN 162
Score = 58.0 bits (140), Expect = 7e-10
Identities = 26/201 (12%), Positives = 59/201 (29%), Gaps = 39/201 (19%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
+P+ + +KC+ + P + +WF + L+ + I D
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVD--- 64
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
DSG YRC + L ++ ++ P+ ++
Sbjct: 65 -----------DSGEYRCQTQLSTLSDPVQLEVH---------IGWLLLQAPRWVFKE-E 103
Query: 327 KLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
+ + C ++ + GK + ++I +D+G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKGRKYFH--------HNSDFYIP----KATLKDSGS 151
Query: 386 YKCNIKNFHGELN-ANLTLNI 405
Y C ++ + + I
Sbjct: 152 YFCRGLVGSKNVSSETVQITI 172
Score = 34.1 bits (78), Expect = 0.061
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNG-EGSSTVNLNFSE 92
I DSG Y + S TV + ++
Sbjct: 139 FYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174
Score = 31.4 bits (71), Expect = 0.59
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNK 500
V+ P+ + +K +V ++C+ E S W ++ +
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS 54
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 58.8 bits (142), Expect = 3e-10
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 23/140 (16%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L + N++ D+G Y+ K S+ L + ++V
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT-------NHSQLFQNMT 124
Query: 118 DLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
L + C +E A W + + +S +P
Sbjct: 125 CELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS---------------WDPRISSEQ 169
Query: 177 NYRCNACNSIGESNANIALN 196
+Y C A N++ + +++
Sbjct: 170 DYTCIAENAVSNLSFSVSAQ 189
Score = 57.3 bits (138), Expect = 1e-09
Identities = 20/201 (9%), Positives = 53/201 (26%), Gaps = 41/201 (20%)
Query: 117 GDLLVMECVLEASPMPD-IIWYQGTKVIE-------DTGRIKMSKKSIGKDTYLLR---L 165
G+ + + A + I W + + I ++ GK + L
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN-----E 220
+++N +D G+YR ++ L + ++ +
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR----------QLRNIQVTNHSQLFQN 122
Query: 221 SGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
+ + C A +W + + + + +
Sbjct: 123 MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS--------------SE 168
Query: 280 GTYRCNVKNEFGESNANLNLN 300
Y C +N + +++
Sbjct: 169 QDYTCIAENAVSNLSFSVSAQ 189
Score = 50.8 bits (121), Expect = 2e-07
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 24/130 (18%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK- 336
D+G+YR + + ++ L + + + + C V+
Sbjct: 81 DTGSYRAQISTKTSAKLSSYTLR-----ILRQLRNIQVTNHSQLFQNMTCELHLTCSVED 135
Query: 337 AKPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
A W G L +SW DPR Y C +N
Sbjct: 136 ADDNVSFRWEALGNTLSSQPNLTVSW----------------DPRISSEQDYTCIAENAV 179
Query: 395 GELNANLTLN 404
L+ +++
Sbjct: 180 SNLSFSVSAQ 189
Score = 33.8 bits (77), Expect = 0.071
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 326 GKLVVMECKVKAKPMPE-IVWFHEGK---ELQQTDRISWNVTLKGDKYHIR--------L 373
G+ V + + A I W + + S + + K R L
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
++ + + EDTG Y+ I ++ TL
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTL 102
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 60.3 bits (145), Expect = 3e-10
Identities = 46/308 (14%), Positives = 87/308 (28%), Gaps = 43/308 (13%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ--GTKVIEDTGRIKMSKKSIGKDTYLLRL 165
P K + + G +++ C + K + G
Sbjct: 6 PSKVILPR-GGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG------------NNRKVY 52
Query: 166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTL 224
E++N +D C + G+S A L + P +E P G
Sbjct: 53 ELSNVQED--SQPMCYSNCPDGQSTAKTFLTVY-------WTPERVELAPLPSWQPVGKN 103
Query: 225 IQMKCKCSA-KPRPE--VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
+ ++C+ PR V + +K +K + T ++
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---TTTVLVRRDH----HGAN 156
Query: 282 YRCNVKNEFGESNANLNLNIEAEAEPE--GDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
+ C + + L N A + + P T + R + + C +
Sbjct: 157 FSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLF 216
Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK--CNIKNFHGEL 397
H Q R++ VT D + + V ED G + C + +
Sbjct: 217 PVSEAQVHLALGDQ---RLNPTVTYGNDSFSAKASVS-VTAEDEGTQRLTCAVILGNQSQ 272
Query: 398 NANLTLNI 405
T+ I
Sbjct: 273 ETLQTVTI 280
Score = 55.6 bits (133), Expect = 9e-09
Identities = 34/261 (13%), Positives = 75/261 (28%), Gaps = 33/261 (12%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
V + NV + + + +G+ ++ L P + P+
Sbjct: 51 VYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTV------YWTP--ERVELAPLPSWQPV 100
Query: 117 GDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
G L + C V +P + ++ +G K + ++ + + +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKEL--------KREPAVGEPAEVTTTVLVRRDH 152
Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFA----PSFIEKPRIIPNESGTLIQMKC 229
G N+ C + + N F P + PR++ E T + C
Sbjct: 153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL--EVDTQGTVVC 210
Query: 230 KCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPD-SGTYRCNVK 287
P E + L ++ V +D++ ++ + + C V
Sbjct: 211 SLDGLFPVSEAQVH----LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVI 266
Query: 288 NEFGESNANLNLNIEAEAEPE 308
+ I + P
Sbjct: 267 LGNQSQETLQTVTIYSFPAPN 287
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 58.2 bits (140), Expect = 8e-10
Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 16/135 (11%)
Query: 278 DSGTYRCNVKNE-FGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
D G+Y C G + ++ L + A P + + G + + C
Sbjct: 89 DEGSYTCLFVTFPQGSRSVDIWLRVLA-------KPQNTAEVQKVQLTGEPVPMARCVST 141
Query: 337 -AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR--LEVKDPRKEDTGLYKCNIKN- 392
+P +I W + + QT ++ + + + D C +++
Sbjct: 142 GGRPPAQITWHSDLGGMPQTSQVPGF---LSGTVTVTSLWILVPSSQVDGKQVTCKVEHE 198
Query: 393 -FHGELNANLTLNIE 406
F ++L +
Sbjct: 199 SFEKPQLLTVSLTVY 213
Score = 53.9 bits (129), Expect = 2e-08
Identities = 28/214 (13%), Positives = 67/214 (31%), Gaps = 32/214 (14%)
Query: 117 GDLLVMECVLEASPMPD-----IIWYQGTK-------------VIEDTGRIKMSKKSIGK 158
GD + + C L+ M + W + + ++ R++ +G
Sbjct: 14 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 73
Query: 159 DTYLLRLEINNPTKDDGGNYRCN-ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
+ L + +D G+Y C G + +I L P + + +
Sbjct: 74 ELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA-------KPQNTAEVQKV 126
Query: 218 PNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI--ICEITDP 274
+ +C + +P ++ W + ++S+ + T + + +
Sbjct: 127 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ---VPGFLSGTVTVTSLWILVPS 183
Query: 275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
D C V++E E L +++
Sbjct: 184 SQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHH 217
Score = 53.5 bits (128), Expect = 3e-08
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 56 AVLTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
A L + ++ D G Y + G S + L ++ + +K +
Sbjct: 78 ASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWL-------RVLAKP-QNTAEVQKVQLT 129
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ + P I W+ + T ++ G T + ++ D
Sbjct: 130 GEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLS--GTVTVTSLWILVPSSQVD 187
Query: 175 GGNYRCNACN 184
G C +
Sbjct: 188 GKQVTCKVEH 197
Score = 35.4 bits (81), Expect = 0.024
Identities = 23/199 (11%), Positives = 47/199 (23%), Gaps = 65/199 (32%)
Query: 326 GKLVVMECKVKAKPMP-----EIVWFHE-------------GKELQQTDRISWNVTLKGD 367
G V + C ++ M ++ W G ++ R+ + G
Sbjct: 14 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 73
Query: 368 KYH-IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
+ L + R ED G Y C F
Sbjct: 74 ELRDASLRMFGLRVEDEGSYTCLFVTF--------------------------------- 100
Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPS 485
R + L + P + V ++ + + C
Sbjct: 101 ----PQGSRSVDIW--------LRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQ 148
Query: 486 VTWMKEKNTVKEDNKHVVH 504
+TW + + + ++
Sbjct: 149 ITWHSDLGGMPQTSQVPGF 167
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 57.0 bits (137), Expect = 2e-09
Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 20/180 (11%)
Query: 129 SPMPDIIWYQGTKVIED------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
S + Y K +ED GR + + I LR I+N T D G Y C
Sbjct: 45 SLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALR--IHNVTASDSGKYLCYF 102
Query: 183 CNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKW 241
+ A + L S + + G I ++C+ + P+P+++W
Sbjct: 103 QDGDFYEKALVELKVAA-------LGSDLHVDVKGYKDGG--IHLECRSTGWYPQPQIQW 153
Query: 242 FKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
+ + +V + Y + + G C +++ +++I
Sbjct: 154 SNNKGENIPTVE-APVVADGVGLYAVAASVIMR-GSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 48.9 bits (116), Expect = 9e-07
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 15/141 (10%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
A L I NV SDSG+Y ++ + + V L +
Sbjct: 83 AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL-----------GSDLHVDVKGY 131
Query: 116 DGDLLVMECV-LEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
+ +EC P P I W T + +G + +
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG---SS 188
Query: 175 GGNYRCNACNSIGESNANIAL 195
G C +S+ ++
Sbjct: 189 GEGVSCTIRSSLLGLEKTASI 209
Score = 43.5 bits (102), Expect = 6e-05
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 32/187 (17%)
Query: 238 EVKWFKAD--KLVKESSKIKIIVNEQDDTY-EIICEITDPIGP-------------DSGT 281
E+KW + ++V + K + + Q Y + D I DSG
Sbjct: 38 ELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGK 97
Query: 282 YRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPM 340
Y C ++ A + L + A ++ K + +EC+ P
Sbjct: 98 YLCYFQDGDFYEKALVELKVAALGSD---LHVDVKGYK------DGGIHLECRSTGWYPQ 148
Query: 341 PEIVWF-HEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398
P+I W ++G+ + V G Y + V R C I++ L
Sbjct: 149 PQIQWSNNKGENIPTV---EAPVVADGVGLYAVAASVI-MRGSSGEGVSCTIRSSLLGLE 204
Query: 399 ANLTLNI 405
+++I
Sbjct: 205 KTASISI 211
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 54.7 bits (131), Expect = 2e-09
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIW---YQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
P G+ LV+ C I + Y +K + K G +
Sbjct: 14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 73
Query: 165 --LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L I+ T+ D G Y C A + + + +
Sbjct: 74 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 53.2 bits (127), Expect = 6e-09
Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 326 GKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKDPR 379
G+ +V+ C + + + W + + Q ++ ++ + + L +
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
+ D GLY C + + + + F+
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV 114
Score = 44.3 bits (104), Expect = 7e-06
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 11 TLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70
T E I+ N++ ++ L + +L+ LTI V +SD G
Sbjct: 31 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ--SGSEMKKFLSTLTIDGVTRSDQGL 88
Query: 71 YKVIAKNKNGEGSSTVNLN 89
Y A + ++ +
Sbjct: 89 YTCAASSGLMTKKNSTFVR 107
Score = 44.0 bits (103), Expect = 1e-05
Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 19/110 (17%)
Query: 222 GTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDTYEIICE----ITDPI 275
G + + C + + W + + + Q + I
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
D G Y C + + + + EKP + G
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVRVH-------------EKPFVAFGSG 119
Score = 31.6 bits (71), Expect = 0.18
Identities = 9/69 (13%), Positives = 26/69 (37%)
Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
+ V+ + +S + +V+ C + + + E + K +K +V+ +
Sbjct: 7 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 513 MNFELWLGI 521
+ +L
Sbjct: 67 SEMKKFLST 75
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 53.7 bits (129), Expect = 3e-09
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
+E+ + +S + G V C K+K P +VW + + +N L
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGIL----- 64
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
+++ + D G Y C N TL+++
Sbjct: 65 ----TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 48.3 bits (115), Expect = 2e-07
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 108 PKKPTIHQDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
++ + G + C SP ++W T+ S+ L
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVW---TR---LHNGKLPSRAMDFNGI----LT 65
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
I N D G Y C N L+ Q
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 45.6 bits (108), Expect = 2e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
+LTI+NVQ SD+G Y N T L+
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 43.6 bits (103), Expect = 8e-06
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 207 APSFI--EKPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
P + E+ R G + C S P + W + S + + +
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFNG 62
Query: 264 TYEIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIE 302
I + P D+GTY C N F L+++
Sbjct: 63 ILTI-----RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 32.5 bits (74), Expect = 0.061
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMY-EPSVTWMKEKNT 494
+ V E + ++ V C S ++ W + N
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG 51
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 55.4 bits (133), Expect = 5e-09
Identities = 23/196 (11%), Positives = 61/196 (31%), Gaps = 16/196 (8%)
Query: 117 GDLLVMECVLEASPM----PDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLR----LE 166
++ + C S I W + K++ +G + + + + + + +
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
I D G Y C ++ + A + + +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREH---LAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 227 MKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
+ C S P P + W + + + + + + + + Y + ++ + + ++ C
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTT-NHSFMCL 183
Query: 286 VKNEFGESNANLNLNI 301
+K N N N
Sbjct: 184 IKYGHLRVNQTFNWNT 199
Score = 45.8 bits (108), Expect = 1e-05
Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 16/133 (12%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE--QGGKLVVMECKV 335
D GTY C V ++ E AE P I + + C
Sbjct: 76 DEGTYECVVLKYEKDAFKR-----EHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICST 130
Query: 336 K-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI--RLEVKDPRKEDTGLYKCNIKN 392
P P + W G+EL + + + + + Y + +L+ + C IK
Sbjct: 131 SGGFPEPHLSWLENGEELNAIN-TTVSQDPETELYAVSSKLDFNMTTNHS---FMCLIK- 185
Query: 393 FHGELNANLTLNI 405
+G L N T N
Sbjct: 186 -YGHLRVNQTFNW 197
Score = 40.0 bits (93), Expect = 7e-04
Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 17/138 (12%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--- 114
+ I ++ SD G Y+ + + E ++ + P+I
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFK------REHLAEVTL---SVKADFPTPSISDFE 117
Query: 115 -QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
++ + C P P + W + + + +L+ N
Sbjct: 118 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---M 174
Query: 173 DDGGNYRCNACNSIGESN 190
++ C N
Sbjct: 175 TTNHSFMCLIKYGHLRVN 192
Score = 31.1 bits (70), Expect = 0.58
Identities = 23/195 (11%), Positives = 44/195 (22%), Gaps = 64/195 (32%)
Query: 326 GKLVVMECKVKA-------------KPMPEIVWFHEGKELQQ---TDRISWNVTLKGDKY 369
++ + C K ++ G +R + +
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTI--FDITNNLS 66
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
+ + R D G Y+C + + K + L +
Sbjct: 67 ---IVILALRPSDEGTYECVVLKY------------------------EKDAFKREHLAE 99
Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPSVTW 488
SV P I I I C + EP ++W
Sbjct: 100 VT--------------LSVKADFPTPSIS----DFEIPTSNIRRIICSTSGGFPEPHLSW 141
Query: 489 MKEKNTVKEDNKHVV 503
++ + N V
Sbjct: 142 LENGEELNAINTTVS 156
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 52.4 bits (125), Expect = 1e-08
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI--VWFHEGKELQQTDRISWNVTLKGDKY 369
P +P+ +S G V C + + W + + LQ + ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 370 HIR----LEVKDPRKEDTGLYKCNIKNFHGEL---NANLTLN 404
+ L +++ G Y+C I N G A LT+N
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 50.1 bits (119), Expect = 7e-08
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 105 PRFPKKP--TIHQDGDLLVMECVLEASPMPDI--IWYQGTKVIEDT---GRIKMSKKSIG 157
P+ +P G + C +S + W + ++D + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
Y L + N G Y+C N G S + A
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXA 107
Score = 47.0 bits (111), Expect = 9e-07
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDTY 265
P +P G+ + C ++ + W ++ ++++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 266 EIIC----EITDPIGPDSGTYRCNVKNEFGE---SNANLNLN 300
+ + + G Y+C + N FG A L +N
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 43.9 bits (103), Expect = 1e-05
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 38 SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS-----TVN 87
+ + Q + Y +L ++NV+ + G Y+ + N G S T+N
Sbjct: 58 MENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 33.9 bits (77), Expect = 0.031
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVT--WMKEKNTVKEDNKHV-VHIEQV 508
P I P+ + V C S + +T W + +++ H+
Sbjct: 8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQ 67
Query: 509 KDVSMNFELWLGI 521
M + L +
Sbjct: 68 GGELMEYTTILRL 80
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 56.3 bits (135), Expect = 2e-08
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 22/203 (10%)
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
LL + + P+ + IW R +++ + + Y + E+ T
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVI--TSGHQ 147
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
G + + + + +G +C +
Sbjct: 148 GYLAIDEVK---------------VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRT 192
Query: 236 RPEVKWFKA--DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
+ + D +IK+ + + + T D+G YRC ++ E G
Sbjct: 193 VAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR---DAGKYRCMIRTEGGVG 249
Query: 294 NANLNLNIEAEAEPEGDPPTFIE 316
+N + E PP
Sbjct: 250 ISNYAELVVKEPPVPIAPPQLAS 272
Score = 51.3 bits (122), Expect = 7e-07
Identities = 23/149 (15%), Positives = 43/149 (28%), Gaps = 9/149 (6%)
Query: 48 DQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF 107
D +R + A L I + + + + + + P + P F
Sbjct: 115 DPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH------PCTRTPHF 168
Query: 108 PKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
+ + G +C + + + D ++ S +
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA--SFN 226
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIAL 195
+ N TK D G YRC G +N A
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAE 255
Score = 50.5 bits (120), Expect = 1e-06
Identities = 24/186 (12%), Positives = 51/186 (27%), Gaps = 22/186 (11%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSK--IKIIVNEQDDTYEIICEITDPIGPDS 279
G L + K + P W + + ++ + I + I IT
Sbjct: 92 GLL-NVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVIT---SGHQ 147
Query: 280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
G + + + G+ +C +
Sbjct: 148 GYLAIDEVKVL---------------GHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRT 192
Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
+ + +G +++ VT ++ V + K D G Y+C I+ G +
Sbjct: 193 VAGDRLWLQGIDVRDAPLKEIKVT-SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS 251
Query: 400 NLTLNI 405
N +
Sbjct: 252 NYAELV 257
Score = 39.4 bits (91), Expect = 0.003
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 50 SRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEE 93
S ++A + N K D+G+Y+ + + + G G S +E
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 55.9 bits (135), Expect = 2e-08
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWY--QG 139
G + + + +G + C + P P I+W +
Sbjct: 365 GKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRK 424
Query: 140 TKV-IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
V + GR+ + LE+ D G Y C A N+ G + L+
Sbjct: 425 HLVSAKSNGRLTVFPDGT--------LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
Score = 50.1 bits (120), Expect = 1e-06
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 212 EKPRIIPNES-------GTLIQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQDD 263
+ RI ++ G +Q C+ P P + W LV S ++ V
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG- 441
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
E+ D+GTY C N G + +L++ +
Sbjct: 442 ----TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 48.9 bits (117), Expect = 2e-06
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 316 EKPKIRSEQGGKLVVME-------CKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
+ +IR + ++ V E C+ P P I+W K L +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKS--------NGR 434
Query: 369 YHIR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ LEV+ + +D G Y C N G + L++
Sbjct: 435 LTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 38.9 bits (91), Expect = 0.004
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L ++ Q D+G Y IA N G S +L+
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
Score = 28.9 bits (65), Expect = 4.7
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTV 495
+ + V + + TV C+ P++ W+ + +
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHL 426
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 53.3 bits (127), Expect = 4e-08
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 56 AVLTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
L + Q D +Y V+ G +T LN + P K T+
Sbjct: 77 GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN-------VFAKPEATEVSPNKGTLS 129
Query: 115 --QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRI--------KMSKKSIGKDTYLL 163
+D + C +P P I WY+ + +E + + +++ G +
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189
Query: 164 RLEINNPTKDDGGNYRCNACNSIGESNA 191
L + D ++ C A S+ E
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRH 217
Score = 51.7 bits (123), Expect = 1e-07
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 278 DSGTYRCNVK-NEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
D Y C V+ G + A LN+ A+ PE K + + + C +
Sbjct: 88 DERDYVCVVRAGAAGTAEATARLNVFAK--PE-ATEVSPNKGTLSVMEDSAQEIATCNSR 144
Query: 337 -AKPMPEIVWFHEGKELQQTDRI-------SWNVTLKGDKYHI--RLEVKDPRKEDTGLY 386
P P+I W+ G+ L+ + S V + L ++ + + +
Sbjct: 145 NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASF 204
Query: 387 KC 388
C
Sbjct: 205 HC 206
Score = 47.1 bits (111), Expect = 5e-06
Identities = 23/210 (10%), Positives = 54/210 (25%), Gaps = 38/210 (18%)
Query: 117 GDLLVMECVLEASPMPDII-WYQGTK-------VIEDTGRIKMSKKSIGKDTYLLR---- 164
G ++++C + ++ W+ + + ++
Sbjct: 15 GKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD 74
Query: 165 ----LEINNPTKDDGGNYRCNAC-NSIGESNANIALNFQGGENGAGFAPSFIE----KPR 215
L + D +Y C + G + A LN P E K
Sbjct: 75 SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA-------KPEATEVSPNKGT 127
Query: 216 IIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKI-------IVNEQDDTYEI 267
+ E C P P++ W++ + ++ ++ V E +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187
Query: 268 ICEITDPIGP--DSGTYRCNVKNEFGESNA 295
+ + ++ C E
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSLPEGRH 217
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 53.6 bits (129), Expect = 1e-07
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
P+ I + G + ++C PM + W + G + +S S +L
Sbjct: 356 MDAPRDLNISE-GRMAELKC--RTPPMSSVKW------LLPNGTV-LSHASRHPRISVLN 405
Query: 165 ---LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L ++ D G Y C N G SNA+ LN
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
Score = 52.4 bits (126), Expect = 2e-07
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
P ++ P+ + G++ ++C+ PM + W + +++ D
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L DTG+Y C + N G NA+ LN+
Sbjct: 409 ---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 50.9 bits (122), Expect = 7e-07
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
AP ++ PR + G + ++KC+ P VKW + V + ++ +D
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
+ D+G Y C V N G SNA+ LN+
Sbjct: 410 NFSHVLLS---DTGVYTCMVTNVAGNSNASAYLNV 441
Score = 40.1 bits (94), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L +V SD+G Y + N G +++ LN
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
Score = 30.9 bits (70), Expect = 1.2
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTV 495
P I + P+ + IS+ + ++C+ SV W+ TV
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTPP--MSSVKWLLPNGTV 391
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 52.2 bits (125), Expect = 2e-07
Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 6/102 (5%)
Query: 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT 272
K G + ++C + +V +++ V + ++
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVS-VRNGDLFF----K 306
Query: 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF 314
D G Y C E ++ L + G T
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKV-YNFTLHGHHDTL 347
Score = 51.8 bits (124), Expect = 3e-07
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
G + + C K + M ++ W E + + +V+++ L K + ED G+
Sbjct: 261 GDTLTIRCDTKQQGMTKV-WVSPSNEQVLSQGSNGSVSVRNG----DLFFKKVQVEDGGV 315
Query: 386 YKCNIKNFHGELNANLTLNI 405
Y C ++ L +
Sbjct: 316 YTCYAMGETFNETLSVELKV 335
Score = 48.3 bits (115), Expect = 4e-06
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 10/84 (11%)
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
GD L + C + M + + + + + + L
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--------LFFKKVQV 310
Query: 173 DDGGNYRCNACNSIGESNANIALN 196
+DGG Y C A ++ L
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELK 334
Score = 43.3 bits (102), Expect = 1e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L K VQ D G Y A + + +V L
Sbjct: 303 LFFKKVQVEDGGVYTCYAMGETFNETLSVELK 334
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 50.2 bits (119), Expect = 3e-07
Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 22/145 (15%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L+I + + D+G Y E V ++ + L+V + G
Sbjct: 84 LSIGDARMEDTGSYFFRV-----ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138
Query: 118 DLLVMECVL----EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
+ C L EA P W + T L + +D
Sbjct: 139 RPTRLSCSLPGSCEAGPPLTFSWTGNA-----------LSPLDPETTRSSELTLTPRPED 187
Query: 174 DGGNYRCNACNSIGE--SNANIALN 196
G N C + + + LN
Sbjct: 188 HGTNLTCQMKRQGAQVTTERTVQLN 212
Score = 46.0 bits (108), Expect = 8e-06
Identities = 18/145 (12%), Positives = 35/145 (24%), Gaps = 23/145 (15%)
Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL 224
L I + +D G+Y + P + L
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRL 143
Query: 225 I-QMKCKCSAKPRPEVKWFKADKLVKE-----SSKIKIIVNEQDDTYEIICEITDPIGPD 278
+ C A P W + SS++ + +D
Sbjct: 144 SCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDH--------------- 188
Query: 279 SGTYRCNVKNEFGE--SNANLNLNI 301
C +K + + + + LN+
Sbjct: 189 GTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 34.4 bits (78), Expect = 0.052
Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 17/184 (9%)
Query: 227 MKCKCSAKPRPEVKWFKADKLVKESSK--IKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
+ V D+ VK ++ +++ + Q + I D D+G+Y
Sbjct: 42 FRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL--SIGDARMEDTGSYFF 99
Query: 285 NVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV-VMECKVKAKPMPEI 343
V+ + + E + P + S + +L + +A P
Sbjct: 100 RVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTF 159
Query: 344 VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN--L 401
W + T + + + +D C +K ++ +
Sbjct: 160 SWTGNALSPLDPE------TTRSSELTLTPRPED----HGTNLTCQMKRQGAQVTTERTV 209
Query: 402 TLNI 405
LN+
Sbjct: 210 QLNV 213
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 50.5 bits (121), Expect = 9e-07
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
P +E P + G ++C+ + + W + + + D
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
L + +DTG+Y C + N G A+ TLN+
Sbjct: 399 ---LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 49.0 bits (117), Expect = 2e-06
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTY 265
P +E P + G ++KC+ S V W + + + K++I V D T
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLS-DGTL 399
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
T+ D+G Y C V N G + A+ LN+
Sbjct: 400 NF----TNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 48.2 bits (115), Expect = 4e-06
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 23/100 (23%)
Query: 110 KPTIHQD--------GDLLVMECVLEAS-PMPDIIWY--QGTKVIEDT--GRIKMSKKSI 156
P I + G ++C AS + + W GT + RI +
Sbjct: 341 APVIVEPPADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L N T D G Y C NS+G + A+ LN
Sbjct: 399 --------LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
Score = 40.1 bits (94), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L NV D+G Y + N G +++ LN
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
Score = 28.2 bits (63), Expect = 8.0
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTV 495
PVI E P + +++ ++C+ S SV+W+ TV
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTV 381
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 1e-06
Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 56/225 (24%)
Query: 331 MECK---------VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
+CK + + + I+ + T R+ W + K ++ + V++ +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRI 89
Query: 382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNP 441
+ YK + E ++ +I+ R R ++ N
Sbjct: 90 N---YKFLMSPIKTEQRQP---SMMTRMYIEQR-------------------DRLYNDNQ 124
Query: 442 QFKKYSVLTLSVVPVIREV-----P-KVVTI-----SKKKTVVIE-C---KVMSMYEPSV 486
F KY+V L +R+ P K V I S K V ++ C KV + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 487 TWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKI 531
W+ +K N +E ++ + + +IK+
Sbjct: 185 FWL----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Score = 34.1 bits (77), Expect = 0.13
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 42/127 (33%)
Query: 433 YHRDFSVNPQFKKYSVLTLSVVPV-------------IREVPKVVTISKKKTVVIECKVM 479
+H DF +Y ++ V ++++PK + +SK+ E +
Sbjct: 5 HHMDFETGEHQYQYK----DILSVFEDAFVDNFDCKDVQDMPKSI-LSKE-----EIDHI 54
Query: 480 SMYEPSVT-------WM---KEKNTVKEDNKHVVHIEQVKDVSMNFELWLGI-VEKRGPS 528
+ W K++ V++ +E+V ++ F L I E+R PS
Sbjct: 55 -IMSKDAVSGTLRLFWTLLSKQEEMVQK------FVEEVLRINYKF-LMSPIKTEQRQPS 106
Query: 529 IKIIYYI 535
+ YI
Sbjct: 107 MMTRMYI 113
Score = 33.7 bits (76), Expect = 0.19
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 53/178 (29%)
Query: 6 ELKSYTLEGEPTKQIEANFQMNM--------YHKGSLLKMSDRLSSTLVQDQSRLYYLAV 57
+ S TL + K + + ++ + ++S + + ++D +
Sbjct: 292 DHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLS--IIAESIRDG-------L 341
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDG---KLKVPGGKAPRFPKKPTIH 114
T N + + + I + SS L +E +L V FP
Sbjct: 342 ATWDNWKHVNCDKLTTIIE------SSLNVLEPAEYRKMFDRLSV-------FPP----- 383
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI--KMSKKS-IGKDTYLLRLEINN 169
+ +L +IW+ K D + K+ K S + K + I +
Sbjct: 384 ---SAHIPTILLS------LIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTISIPS 430
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 48.4 bits (115), Expect = 3e-06
Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 29/233 (12%)
Query: 135 IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
I+ Q + S K D + I+N T D G Y C + +
Sbjct: 49 IYNQKEGHFPRVTTVSESTKRENMDFSI---SISNITPADAGTYYCVKFRK---GSPDTE 102
Query: 195 LNFQGG---ENGAGFAPSFIEKP--RIIPNESGTLIQMKCKCSAK---PRP-EVKWFKAD 245
G A + + P R P + + C + PR +KWFK
Sbjct: 103 FKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFT-----CESHGFSPRDITLKWFKNG 157
Query: 246 KLVKESSKIKIIVNEQDDTYEIICEITDPI--GPDSGTYRCNVKNEFGESNANLNLNIEA 303
+ + + + +Y I + C V + + +
Sbjct: 158 NELS-DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDP----LRGT 212
Query: 304 EAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQ 354
E + + + V + C+V+ P ++ W G +
Sbjct: 213 ANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT 265
Score = 37.6 bits (87), Expect = 0.008
Identities = 31/259 (11%), Positives = 80/259 (30%), Gaps = 21/259 (8%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
++I N+ +D+G Y K +GS AP
Sbjct: 74 FSISISNITPADAGTYYC---VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARAT 130
Query: 116 DGDLLVMECVLEA-SPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKD-TYLLR--LEINNP 170
+ C SP + W++ + D + + +G+ +Y + ++
Sbjct: 131 PQHTVSFTCESHGFSPRDITLKWFKNGNELSDF---QTNVDPVGESVSYSIHSTAKVVLT 187
Query: 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230
+D C + + + + P + + + C+
Sbjct: 188 REDVHSQVICEVAHVTLQGDPLRG----TANLSETIRVPPTLEVTQQPVRAENQVNVTCQ 243
Query: 231 CSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP--DSGTYRCNV 286
P+ ++ W + + + + + N+ D TY + + + D C V
Sbjct: 244 VRKFYPQRLQLTWLENGNVSRTETASTVTENK-DGTYNWMSWLLVNVSAHRDDVKLTCQV 302
Query: 287 KNEFGESNANLNLNIEAEA 305
+++ G+ + + +++
Sbjct: 303 EHD-GQPAVSKSHDLKVST 320
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 43.3 bits (102), Expect = 1e-05
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 12/88 (13%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI--------RLEVKD 377
G ++ C+V + W + QQT L+ ++ + + V D
Sbjct: 21 GGTAILTCRVDQNDNTSLQWSNPA---QQTLYFDDKKALRDNRIELVRASWHELSISVSD 77
Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNI 405
D G Y C++ + L +
Sbjct: 78 VSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
Score = 38.3 bits (89), Expect = 7e-04
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS----IGKDTYLLRLEINNPTK 172
G ++ C ++ + + W + K + + + + L + +++ +
Sbjct: 21 GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSL 80
Query: 173 DDGGNYRC 180
D G Y C
Sbjct: 81 SDEGQYTC 88
Score = 31.8 bits (72), Expect = 0.15
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 460 VPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
+ + VT+ + T ++ C+V S+ W +
Sbjct: 12 LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKA 55
Score = 31.0 bits (70), Expect = 0.31
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 58 LTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLN 89
+++ +V SD G+Y + +S L
Sbjct: 73 ISVSDVSLSDEGQYTCSL--FTMPVKTSKAYLT 103
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-------IVNEQDDTYEIICEITDP 274
G + C+ ++W + K +V I ++D
Sbjct: 21 GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI--SVSDV 78
Query: 275 IGPDSGTYRCNV 286
D G Y C++
Sbjct: 79 SLSDEGQYTCSL 90
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 46.5 bits (110), Expect = 2e-05
Identities = 37/290 (12%), Positives = 82/290 (28%), Gaps = 47/290 (16%)
Query: 107 FPKKPTIHQDGDLLVMECVLE-------ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
P+ P + Q CVL+ I+W I + +
Sbjct: 9 SPESPVV-QLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII-------N 60
Query: 160 TYLLRLEINNPTKDDGGNYRCN--ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
+ + + CN + ++ I + +G P + I
Sbjct: 61 RTASSVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITII-------SGLPPEKPKNLSCI 112
Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
NE M+C+ ++ K + K ++D + + +
Sbjct: 113 VNEGKK---MRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS-TVYF 168
Query: 278 DSGTYRCNVKNEFGESNA-NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVV------ 330
+ +N G+ + ++N + + +P +PP + E L +
Sbjct: 169 VNIEVWVEAENALGKVTSDHINFDPVYKVKP--NPPHNL-SVINSEELSSILKLTWTNPS 225
Query: 331 ------MECKVKAKPMPEIVWFHEGKELQQTDRISWNVT--LKGDKYHIR 372
++ ++ + W E + R S+ V +Y R
Sbjct: 226 IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 275
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 42.7 bits (100), Expect = 4e-05
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
+ + + + G+ + ++C + + W T ++ LK KY +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPS---GFTIFLNEYPVLKNSKYQL 58
Query: 372 --------RLEVKDPRKEDTGLYKCNIKNFH-GELNANLT 402
+ V + +D G+YKC + +
Sbjct: 59 LHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVI 98
Score = 41.1 bits (96), Expect = 1e-04
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 115 QDGDLLVMECVLEASPMPDIIW--------YQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
++G L ++CV + W + + + ++ S + L +
Sbjct: 14 EEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ----LSIT 69
Query: 167 INNPTKDDGGNYRCNA 182
+ N T D G Y+C
Sbjct: 70 VPNVTLQDEGVYKCLH 85
Score = 33.4 bits (76), Expect = 0.054
Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-------IVNE 260
S I E G + +KC S + ++W ++ + +++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNE-FGESNANLNLNIEAEAEPEGDP 311
+ I + + D G Y+C ++ + + + E P
Sbjct: 62 SANQLSI--TVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYP 111
Score = 33.0 bits (75), Expect = 0.063
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
+ + +T+ + +T+ ++C S+ W+ N++ V
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPV 50
Score = 33.0 bits (75), Expect = 0.067
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
+T+ NV D G YK + + + V + K + P + H
Sbjct: 68 ITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATM---KGEFCRYPSHWRPLEHHH 121
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 42.0 bits (98), Expect = 2e-04
Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 15/143 (10%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
+ +++ + + + + + P P
Sbjct: 53 ARQLVDIR-EPETQPVCFFRCARRTLQARGLIRT------FQRP--DRVELMPLPPWQPV 103
Query: 117 GDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
G+ + C V A P + +G + + R + + +L + +D
Sbjct: 104 GENFTLSCRVPGAGPRASLTLTLLRGAQELI---RRSFAGEPPRARGAVLTATVLARRED 160
Query: 174 DGGNYRCNACNSIGESNANIALN 196
G N+ C A + + N
Sbjct: 161 HGANFSCRAELDLRPHGLGLFEN 183
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 41.8 bits (98), Expect = 3e-04
Identities = 37/263 (14%), Positives = 74/263 (28%), Gaps = 49/263 (18%)
Query: 40 RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNG-----EGSSTVNLNFSEED 94
+ + + + V + +G Y + + S+ V + +
Sbjct: 58 KEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGN- 116
Query: 95 GKLKVPGGKAPRFPKKPTIHQDGDLLVME-------CVLEASPMPDI-IWYQGTKVIEDT 146
+KP++ LV C + M + ++ + +
Sbjct: 117 -------------HRKPSLLAHPGPLVKSGERVILQC--WSDIMFEHFFLHKEGISKDPS 161
Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN---SIGESNANIALNFQGGENG 203
+ + K + I G YRC S + L+
Sbjct: 162 RLVGQIHDGVSKANF----SIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY 217
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
+ S P++ ES TL CS++ + + L +E + +
Sbjct: 218 EKPSLSAQPGPKVQAGESVTL-----SCSSRSSYD--MY---HLSREGGAHERRLPAVRK 267
Query: 264 TYEIICEITDPIGP--DSGTYRC 284
+ P+GP GTYRC
Sbjct: 268 VNR-TFQADFPLGPATHGGTYRC 289
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 40.2 bits (93), Expect = 0.001
Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 41/242 (16%)
Query: 104 APRFPKKPTIHQD------GDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
APR + + GD + + C +E + W
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR- 60
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
RL + + D GNY C + + L P +
Sbjct: 61 -------RLLLRSVQLHDSGNYSCYRAGRPAGT---VHLL-------VDVPPEEPQLSCF 103
Query: 217 IPNESGTLIQMKCKCSAKPRPE------VKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
+ ++ C PR + + ++ + C+
Sbjct: 104 RKSPLSNVV-----CEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQ 158
Query: 271 ITDPIGPDSGTY--RCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
+ P G S Y V + G S + + + DPP I + L
Sbjct: 159 LAVPEGDSS-FYIVSMCVASSVG-SKFSKTQTFQGCGILQPDPPANI-TVTAVARNPRWL 215
Query: 329 VV 330
V
Sbjct: 216 SV 217
Score = 40.2 bits (93), Expect = 0.001
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 8/80 (10%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECK-VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
P + + G V + C V+ + + W G
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH---PSRWAGMGR-- 60
Query: 370 HIRLEVKDPRKEDTGLYKCN 389
RL ++ + D+G Y C
Sbjct: 61 --RLLLRSVQLHDSGNYSCY 78
Score = 34.8 bits (79), Expect = 0.059
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE-PSVTWMKEKNTVKEDNKHVV 503
L P V+T +V + C + + +V W+ K
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA 56
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 39.5 bits (92), Expect = 0.002
Identities = 26/125 (20%), Positives = 34/125 (27%), Gaps = 20/125 (16%)
Query: 164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT 223
+ I + G Y C S + L+ E S P +I E T
Sbjct: 61 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 120
Query: 224 LIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP----DS 279
C F L+KE + E P+GP
Sbjct: 121 F-----YCRLDTATS--MF---LLLKEGRSSHVQRGYGKVQAEF------PLGPVTTAHR 164
Query: 280 GTYRC 284
GTYRC
Sbjct: 165 GTYRC 169
Score = 29.9 bits (67), Expect = 1.9
Identities = 14/101 (13%), Positives = 22/101 (21%), Gaps = 12/101 (11%)
Query: 43 STLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG---SSTVNLNFSEEDGKLKV 99
S+ VQ A + V + G Y+ N S V L + +
Sbjct: 140 SSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN--- 195
Query: 100 PGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGT 140
+ E D + T
Sbjct: 196 -----TSLAPEDPTFPADTWGTYLLTTETGLQKDHALWDHT 231
Score = 29.5 bits (66), Expect = 2.1
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 28/119 (23%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
+G Y C + S + L++ D PT P G K V C++
Sbjct: 71 MAGQYSCIYRVGELWSEPSNLLDLVVTEMY--DTPTLSVHPGPEVISGEK-VTFYCRLDT 127
Query: 338 KPMPEIVWFHEGK--ELQQTDRISW------NVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ EG+ +Q+ VT G Y+C
Sbjct: 128 ATSM-FLLLKEGRSSHVQRGYGKVQAEFPLGPVTT----------------AHRGTYRC 169
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 39.1 bits (91), Expect = 0.002
Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 35/188 (18%)
Query: 110 KPTI--HQD-----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
P I + ++C +A + K ++ ++ ++ +
Sbjct: 9 MPFISAKSSPVIPLDGSVKIQC--QAIREAYLTQLMIIK---NSTYREIGRRLKFWNETD 63
Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR--IIPNE 220
I++ + G Y+C + L G P ++P E
Sbjct: 64 PEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV--TGLYGKPFLSADRGLVLMPGE 121
Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP--- 277
+ +L CS+ P ++ L KE + +GP
Sbjct: 122 NISL-----TCSSAHIPFDRFS----LAKEGELSLPQHQSGEHPANF------SLGPVDL 166
Query: 278 -DSGTYRC 284
SG YRC
Sbjct: 167 NVSGIYRC 174
Score = 35.6 bits (82), Expect = 0.024
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 15/119 (12%)
Query: 274 PIGP----DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV 329
I +G Y+C + + L + P + G +
Sbjct: 67 VIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLY--GKPFLSADRGLVLMPGEN-I 123
Query: 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ C P EG+ + + + +G+Y+C
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLPQHQSGE--------HPANFSLGPVDLNVSGIYRC 174
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.1 bits (85), Expect = 0.002
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 212 EKPRIIPNE-----SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
E I SGT + + C P E+ W DK + K I + D+ +
Sbjct: 6 EMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS--DEDHL 61
Query: 267 IICEITDPIGPDSGTYRCNVKNEFGES 293
+ E ++ SG Y C + E
Sbjct: 62 SLKEFSE--LEQSGYYVCYPRGSKPED 86
Score = 34.0 bits (77), Expect = 0.027
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK-EDTG 384
G V++ C P EI+W H K + + + + L +K+ + E +G
Sbjct: 21 GTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDH-----LSLKEFSELEQSG 73
Query: 385 LYKCNIKNFHGE 396
Y C + E
Sbjct: 74 YYVCYPRGSKPE 85
Score = 29.4 bits (65), Expect = 1.1
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
G +++ C P +I+W K I K+IG D L L+ + G
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGG----DEDDKNIGSDEDHLSLK-EFSELEQSG 73
Query: 177 NYRCNACNSIGES 189
Y C S E
Sbjct: 74 YYVCYPRGSKPED 86
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 38.6 bits (90), Expect = 0.002
Identities = 28/125 (22%), Positives = 37/125 (29%), Gaps = 20/125 (16%)
Query: 164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT 223
L I + G YRC+ N S + L A + S P + T
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVT 112
Query: 224 LIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP----DS 279
L +C + + F L KE E+ PI S
Sbjct: 113 L-----QCQTRYGFD--QF---ALYKEGDPAPYKNPERWYRASF------PIITVTAAHS 156
Query: 280 GTYRC 284
GTYRC
Sbjct: 157 GTYRC 161
Score = 30.2 bits (68), Expect = 1.2
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
+G YRC+ +N S + L + A P+ +P GG V ++C+ +
Sbjct: 63 LAGRYRCSYQNGSLWSLPSDQLELVATGVF--AKPSLSAQPGPAVSSGGD-VTLQCQTR- 118
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ + EG + W Y + +G Y+C
Sbjct: 119 YGFDQFALYKEGDPAPYKNPERW--------YRASFPIITVTAAHSGTYRC 161
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 37.3 bits (86), Expect = 0.002
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
+ + G+ V + WF G+EL+ + V +Y
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEG-QVEPGALRYR 64
Query: 371 I-------RLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
I RL + + +D+G + +A LT
Sbjct: 65 IEQKGLQHRLILHAVKHQDSGALVGFSCP-GVQDSAALT 102
Score = 28.8 bits (64), Expect = 1.9
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS-----KKSIGKDTYLLRLEINN 169
DG+ V + S + W+ + ++ + I + RL ++
Sbjct: 21 YDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHA 78
Query: 170 PTKDDGGNYRCNACNSIGES 189
D G +C + +S
Sbjct: 79 VKHQDSGALVGFSCPGVQDS 98
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 38.9 bits (90), Expect = 0.003
Identities = 27/230 (11%), Positives = 60/230 (26%), Gaps = 48/230 (20%)
Query: 117 GDLLVMECVLEASPMPD-----IIWYQ---------------GTKVIEDTGRIKMSKKSI 156
D + + C + S + I W+ G +S +
Sbjct: 18 NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRL 77
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPS--FIEKP 214
LR + ++ G YRC + ++ + L +P+ +
Sbjct: 78 KSGDASLR--LPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA-------SPASRLLLDQ 128
Query: 215 RIIPNESGTLIQMKCKCSAK---PRP-EVKWFK------ADKLVKESSKIKIIVNEQDDT 264
+ + C + P + W K + E + D T
Sbjct: 129 VGMKENEDKYM-----CESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGT 183
Query: 265 YEI--ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPP 312
+ + ++ Y+C V++ + N + A +
Sbjct: 184 FNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETE 233
Score = 31.6 bits (71), Expect = 0.57
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 19/134 (14%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
A L + +Q ++GEY+ + TV L ++ + + + +
Sbjct: 82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL-------EVVAS-PASRLLLDQVGMKE 133
Query: 116 DGDLLVMECVLEA-SPMP-DIIWYQ----GTKVIEDTGRIKMSKKSIGKD-TYLL--RLE 166
+ D + C P +I W + IE + + D T+ + L+
Sbjct: 134 NEDKYM--CESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLK 191
Query: 167 INNPTKDDGGNYRC 180
+N+ +D G Y+C
Sbjct: 192 LNSSQEDPGTVYQC 205
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 37.2 bits (85), Expect = 0.003
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 210 FIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADK----LVKESSKIKIIVNEQDDT 264
I++ +G L +++C RP V W K + ++ ++ E
Sbjct: 17 NIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSV 76
Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFG 291
+ D+G+Y C+
Sbjct: 77 PVFVLHFKPIHLSDNGSYSCSTNFNSQ 103
Score = 32.5 bits (73), Expect = 0.090
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 107 FPKKPTIH--QDGDLLVMEC-VLEASPMPDIIWY----QGTKVIEDTGRIKMSKKSIGKD 159
K+ + H G+L +EC V P++ W +E ++ S + +
Sbjct: 17 NIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEEN-RS 75
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIG 187
+ L D G+Y C+ +
Sbjct: 76 VPVFVLHFKPIHLSDNGSYSCSTNFNSQ 103
Score = 29.5 bits (65), Expect = 1.0
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 35 LKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVNLNFSEE 93
+ + +++R + VL K + SD+G Y + S +V ++ E
Sbjct: 58 VPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVRER 117
Query: 94 DG 95
Sbjct: 118 SQ 119
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 38.3 bits (88), Expect = 0.003
Identities = 27/225 (12%), Positives = 51/225 (22%), Gaps = 45/225 (20%)
Query: 108 PKKPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
P+ G + C L A + W + S ++ DT L
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWR----------GLDTSLGAVQSDTGRSVLT 62
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
+ N + G C + L F P + +
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY------AFPNQLTVSPAALVPGDPEV-- 114
Query: 227 MKCKCSA-----KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD-------- 273
C + ++ + + V E+++ + ++
Sbjct: 115 -ACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRL 173
Query: 274 -PIGPDSG-TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIE 316
P+G C + L E P IE
Sbjct: 174 PPLGTPVPPALYCQAT---------MRLP-GLELSHRQAIPVLIE 208
Score = 36.0 bits (82), Expect = 0.015
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 13/104 (12%)
Query: 311 PPTFIEKP--KIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
P +E P + G + C++ A + W L + L
Sbjct: 6 KPLQVEPPEPVVAVALGASRQL-TCRLACADRGASVQWRGLDTSLGAVQSDTGRSVL--- 61
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
V++ G C + L +
Sbjct: 62 ------TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQ 99
Score = 31.8 bits (71), Expect = 0.45
Identities = 24/163 (14%), Positives = 43/163 (26%), Gaps = 25/163 (15%)
Query: 208 PSFIEKP-RIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
P +E P ++ G Q+ C+ + A V+W D + Q DT
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---------AVQSDTG 57
Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
+ + + +GT C + L + A P +
Sbjct: 58 RSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGD------ 111
Query: 326 GKLVVMECKV-----KAKPMPEIVWFHEGKELQQTDRISWNVT 363
+ C G+EL+ + V
Sbjct: 112 ---PEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQ 151
Score = 29.1 bits (64), Expect = 3.2
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 40 RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
L ++L QS +VLT++N S +G + TV L
Sbjct: 44 GLDTSLGAVQS-DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL 92
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 37.1 bits (85), Expect = 0.003
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
+ + + + +A A+ + G VV++C+VK + W
Sbjct: 14 RQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWS 73
Query: 347 HEGKELQQTDRISWNVTLKGDKYHI--------RLEVKDPRKEDTGLYKCNI 390
+ + QT L+ ++ + + + + D G Y C+I
Sbjct: 74 NPAQ---QTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI 122
Score = 36.3 bits (83), Expect = 0.006
Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 75 AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDI 134
+ ++ + + + + + + + T+ G +V++C ++ +
Sbjct: 12 FERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETV-VAGGTVVLKCQVKDHEDSSL 70
Query: 135 IWYQGTKVIEDTGRIKMSKKS----IGKDTYLLRLEINNPTKDDGGNYRC 180
W + G + + + + + L + I+N D G Y C
Sbjct: 71 QWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
Score = 29.8 bits (66), Expect = 1.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 58 LTIKNVQKSDSGEY 71
++I NV +D GEY
Sbjct: 105 ISISNVALADEGEY 118
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 39.0 bits (89), Expect = 0.004
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 7/106 (6%)
Query: 283 RCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE 342
+ + L E + P + + G ++C K +
Sbjct: 505 TATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQK-SNLAR 563
Query: 343 IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ W + L+ + K L + + + D+G+Y+C
Sbjct: 564 VFWKFQNGVLKAESPKYGLMGRKN------LLIFNLSEGDSGVYQC 603
Score = 37.8 bits (86), Expect = 0.010
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
+ + + G ++C + S + + W V++
Sbjct: 536 SKGSYRQHFFKHGGTAELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRKN------- 587
Query: 165 LEINNPTKDDGGNYRCNA 182
L I N ++ D G Y+C +
Sbjct: 588 LLIFNLSEGDSGVYQCLS 605
Score = 34.4 bits (77), Expect = 0.11
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 227 MKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
+ KCS K V W + ++K S ++ ++ I + DSG Y+C
Sbjct: 551 AELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLL------IFNLSEGDSGVYQC- 603
Query: 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMEC 333
+ E ++ + + E + P + + G + +
Sbjct: 604 LSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKV 651
Score = 30.1 bits (66), Expect = 2.4
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
L I N+ + DSG Y+ +++ + + + VP K P + +G
Sbjct: 588 LLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAKHVLEVKVVP--KPVVAPTLSVVQTEG 644
Query: 118 DLLVMECVLEASP 130
+ + ++ ++
Sbjct: 645 SRIATKVLVASTK 657
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 38.1 bits (87), Expect = 0.007
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
+ P + + C +E S W V + S I
Sbjct: 503 DKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNCI-------- 553
Query: 165 LEINNPTKDDGGNYRCNAC-NSIGESNANIALNFQGG 200
L I N T G+Y C A S + L + G
Sbjct: 554 LFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPEDG 590
Score = 34.6 bits (78), Expect = 0.081
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
P + S + C +++ W H+ Q + +
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNC------ 552
Query: 371 IRLEVKDPRKEDTGLYKC 388
L +++ + G Y C
Sbjct: 553 -ILFIENLTAQQYGHYFC 569
Score = 30.4 bits (67), Expect = 1.8
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
HK ++ + + + +L I+N+ G Y A+ +
Sbjct: 534 RHKENVEQSCEPGHQSPNC---------ILFIENLTAQQYGHYFCEAQE-GSYFREAQHW 583
Query: 89 NFSEEDG 95
EDG
Sbjct: 584 QLLPEDG 590
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 35.7 bits (82), Expect = 0.009
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
L I+NV+ SD G Y ++ + + + V L +
Sbjct: 85 VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121
Score = 35.3 bits (81), Expect = 0.013
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 16/82 (19%)
Query: 238 EVKWFKAD--KLVKESSKIKIIVNEQDDTYEI-ICEITDPIGP-------------DSGT 281
EV W+++ ++V K EQ Y + + IG D G
Sbjct: 40 EVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG 99
Query: 282 YRCNVKNEFGESNANLNLNIEA 303
Y C ++ + A + L +E
Sbjct: 100 YTCFFRDHSYQEEAAVELKVED 121
Score = 32.6 bits (74), Expect = 0.11
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 336 KAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDKYHIR---LEVKDPRKEDTGLYKCNI 390
++ + + GK+ +Q L + L +++ R D G Y C
Sbjct: 45 RSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFF 104
Query: 391 KNFHGELNANLTLNIE 406
++ + A + L +E
Sbjct: 105 RDHSYQEEAAVELKVE 120
Score = 28.7 bits (64), Expect = 2.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
L I N D G Y C + + A + L
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 118
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 36.3 bits (84), Expect = 0.010
Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 17/126 (13%)
Query: 164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT 223
R I + T+D G YRC + +G S + L + S + P + +S T
Sbjct: 59 RFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVT 118
Query: 224 LIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP----D 278
L C ++ + K +Q P+ P
Sbjct: 119 L-----LCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQA-------EFPMSPVTSVH 166
Query: 279 SGTYRC 284
GTYRC
Sbjct: 167 GGTYRC 172
Score = 28.6 bits (64), Expect = 3.7
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 7/111 (6%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
+G YRC ++ G S + L + PT P G V + C+ ++
Sbjct: 69 YAGRYRCYYRSPVGWSQPSDPLELVMTGAY--SKPTLSALPSPLVTSGKS-VTLLCQSRS 125
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
F KE + ++ + G Y+C
Sbjct: 126 PM----DTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 34.9 bits (80), Expect = 0.016
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNG-EGSSTVNLN 89
L I VQK D+ Y + K G E + L
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
Score = 30.7 bits (69), Expect = 0.47
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 338 KPMPEIVWFHEGKEL---QQTDRISWNVTLKGDKYHI-----RLEVKDPRKEDTGLYKCN 389
+ ++ WF+ + + + + + + + L + +KED Y
Sbjct: 32 ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMR 91
Query: 390 IKNFHGE 396
+ G
Sbjct: 92 VLKKTGN 98
Score = 27.6 bits (61), Expect = 5.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 130 PMPDIIWYQG--TKVIEDTGRIKMSKKSIGKDTYLL-----RLEINNPTKDDGGNYRCNA 182
+ W+ K++E R +S K L L I+ K+D Y
Sbjct: 33 NYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRV 92
Query: 183 CNSIGES 189
G
Sbjct: 93 LKKTGNE 99
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 34.8 bits (79), Expect = 0.017
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 221 SGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-D 278
+G +++C RP V W K + + + +++ +P+ P D
Sbjct: 25 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 84
Query: 279 SGTYRCNVKNEFG 291
+G+YRC+ +
Sbjct: 85 NGSYRCSANFQSN 97
Score = 32.9 bits (74), Expect = 0.080
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 107 FPKKPTIH--QDGDLLVMEC-VLEASPMPDIIW--YQGTKVIEDTGRIKMSKKSIGKDTY 161
+ K+ + H GD +EC V + P + W GT ++ R K+ K+
Sbjct: 14 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEE--KNIS 71
Query: 162 LLRLEINNPTKDDGGNYRCNACNSIG 187
L +D G+YRC+A
Sbjct: 72 FFILHFEPVLPNDNGSYRCSANFQSN 97
Score = 30.2 bits (67), Expect = 0.69
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 55 LAVLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVNLNFSEEDG 95
+L + V +D+G Y+ A ++ S + L ++
Sbjct: 72 FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKH 113
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 34.5 bits (79), Expect = 0.022
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
A + + N+Q SD G Y+ K G + ++L
Sbjct: 89 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
Score = 34.1 bits (78), Expect = 0.036
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 222 GTLIQMKCKCSAKPRP----EVKWFKADKLVKESSKIKIIVNEQDDTYEIICE------- 270
G + CK + P +++W + ++ ++ I+ + + +
Sbjct: 20 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHF 79
Query: 271 -------------ITDPIGPDSGTYRCNVKNEFGESNANLNL 299
+T+ D GTY+C VK G +N ++L
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
Score = 32.9 bits (75), Expect = 0.067
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 134 IIWYQGTKVIEDT-----GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
II Y G K+ +D GR+ + + + + N D G Y+C + G
Sbjct: 57 IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN--VTNLQLSDIGTYQCKVKKAPGV 114
Query: 189 SNANIAL 195
+N I L
Sbjct: 115 ANKKIHL 121
Score = 32.5 bits (74), Expect = 0.095
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 317 KPKIRSEQGGKLVVMECKVKAKPMP----EIVWFHEGKELQQTDR--ISWN--------- 361
+ I +G + CK P +I W + Q+ D+ I ++
Sbjct: 12 EEMIEKAKGET-AYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70
Query: 362 ------VTLKGDKYHIR---LEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
V + + V + + D G Y+C +K G N + L
Sbjct: 71 PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 36.0 bits (82), Expect = 0.030
Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 32/219 (14%)
Query: 99 VPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
+P + FP+ I D+ CV + + +I + +I G
Sbjct: 196 IPDSQTKVFPQDKVILVGSDI-TFCCVSQEKVLSALIGHTNCPLIHLDGENVA------- 247
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
++I N + + N + ++ + P + P+ +
Sbjct: 248 ------IKIRNIS--VSASSGTNVVFTTEDNIFGTVIFAG--------YPP--DTPQQLN 289
Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLV----KESSKIKIIVNEQDDTYEIICEITDP 274
E+ L ++ C + + +A +++ E
Sbjct: 290 CETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQML 349
Query: 275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
+ + N N G S + + +NI + P PT
Sbjct: 350 PNQEIYNFTLNAHNPLGRSQSTILVNITEKVYP--HTPT 386
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 32.9 bits (75), Expect = 0.063
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 333 CKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
C+ + + + +G ++ R+S + + +++ +ED G Y C +
Sbjct: 32 CRPPQIFLCDKIVETKGSAGKRNGRVS--IRDSPANLSFTVTLENLTEEDAGTYWCGVDT 89
Query: 393 FHGELNANLTLNIE 406
+ + + +E
Sbjct: 90 PWLQDFHDPVVEVE 103
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 32.7 bits (75), Expect = 0.077
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 115 QDGDLLVMECVLEASPMPD--IIWYQ-----GTK-VIEDTGRIKMSKKSIGKDTYLLRLE 166
+ G+ L + CV+ S WY+ + I D GR + K L
Sbjct: 13 ETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSL---R 69
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNF 197
IN+ T D G YRC + G +A A
Sbjct: 70 INDLTVKDSGTYRCKPESRYGSYDAVCAALN 100
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune
system; 1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.5 bits (74), Expect = 0.092
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 58 LTIKNVQKSDSGEYKV 73
L I NV+K D G Y +
Sbjct: 75 LHISNVRKEDKGTYYM 90
Score = 26.7 bits (59), Expect = 7.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 373 LEVKDPRKEDTGLYKCNIKN 392
L + + RKED G Y +
Sbjct: 75 LHISNVRKEDKGTYYMRVLR 94
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 33.8 bits (77), Expect = 0.095
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 20/156 (12%)
Query: 134 IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN---SIGESN 190
+ ++ K + I + K + I +D G YRC S
Sbjct: 37 FLLHREGKFKDTLHLIGEHHDGVSKANF----SIGPMMQDLAGTYRCYGSVTHSPYQLSA 92
Query: 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE 250
+ L+ + S P ++ ES TL CS++ + + L +E
Sbjct: 93 PSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTL-----SCSSRSSYD--MYH---LSRE 142
Query: 251 SSKIKIIVNEQDDTYEIICEITDPIGP--DSGTYRC 284
+ + + P+GP GTYRC
Sbjct: 143 GEAHERRFSAGPKVNGTF-QADFPLGPATHGGTYRC 177
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 33.6 bits (76), Expect = 0.10
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 19/159 (11%)
Query: 41 LSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVP 100
L+ L+ +Q++ + V I S + + S N++ +
Sbjct: 40 LNKILLDEQAQWKHYLVSNI-----SHDTVLQCHFTCSGKQESMNSNVSVYQPP------ 88
Query: 101 GGKAPRFPKKPTIHQDGDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIG 157
+ +PT+ G +EC V P+ + ++G + + K +
Sbjct: 89 --RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 146
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+D N+ C A + NI
Sbjct: 147 AT---ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHK 182
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 32.2 bits (73), Expect = 0.11
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 9 SYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS 68
Y EG ++ + + +R+ V D S + I N+ SD+
Sbjct: 38 RYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQ--WVGDPSWKD--GSIVIHNLDYSDN 93
Query: 69 GEYKVIAKNKNGEGSSTVNLN 89
G + KN T +
Sbjct: 94 GTFTCDVKNPPDIVGKTSQVT 114
Score = 28.8 bits (64), Expect = 1.9
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 347 HEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393
+ + +RI W I + + D G + C++KN
Sbjct: 59 YIDEVGTFKERIQWVGDPSWKDGSIVI--HNLDYSDNGTFTCDVKNP 103
Score = 28.8 bits (64), Expect = 2.0
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 271 ITDPIGPDSGTYRCNVKN--EFGESNANLNLNIEAEAEPEGDPPT 313
I + D+GT+ C+VKN + + + L + + PT
Sbjct: 85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK------VPT 123
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 32.2 bits (73), Expect = 0.11
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 333 CKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391
C+ + +V ++ + DR+S + + ++D K D Y C I+
Sbjct: 38 CRGAIWRDCKILVKTSGSEQEVKRDRVS--IKDNQKNRTFTVTMEDLMKTDADTYWCGIE 95
Query: 392 NFHGELNANLTLNI 405
+L + + I
Sbjct: 96 KTGNDLGVTVQVTI 109
Score = 29.5 bits (66), Expect = 1.1
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
++ G++ R+ + + + + + K D Y C
Sbjct: 44 RDCKILVKTSGSEQEVKRDRVSIKDN---QKNRTFTVTMEDLMKTDADTYWC 92
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 33.7 bits (76), Expect = 0.12
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 108 PKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
+ G +C + D +W QG V + + K ++
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK---EIKVTSSRRFIASFN 226
Query: 167 INNPTKDDGGNYRCNACNSIGESNANIA 194
+ N TK D G YRC G +N A
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYA 254
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 32.3 bits (73), Expect = 0.13
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
Query: 338 KPMPEIVWFHEGKEL------QQTDRISWNVTLKGDKYHIRLEVKDP-------RKEDTG 384
+ FH ++R+S+ + E++D ED G
Sbjct: 47 ANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEG 106
Query: 385 LYKCNIKNF-HGELNANLTLNI 405
Y C F G + L +
Sbjct: 107 NYTCEFATFPKGSVRGMTWLRV 128
Score = 30.7 bits (69), Expect = 0.46
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 56 AVLTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLN 89
A L + + D G Y A G L
Sbjct: 93 ATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR 127
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 32.9 bits (75), Expect = 0.14
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 27/139 (19%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNG--EGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI 113
A +I ++ + +G Y+ + G E S + L F KPT+
Sbjct: 58 ARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV--------------VTGFYNKPTL 103
Query: 114 H-------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
G+ + ++C + T+ + + + +
Sbjct: 104 SALPSPVVTSGENVTLQCGSRLRFD----RFILTEEGDHKLSWTLDSQLTPSGQFQALFP 159
Query: 167 INNPTKDDGGNYRCNACNS 185
+ T RC
Sbjct: 160 VGPVTPSHRWMLRCYGSRR 178
Score = 29.5 bits (66), Expect = 1.9
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
+G YRC + G S + L + + PT P G V ++C +
Sbjct: 69 HAGRYRCYYYSPAGWSEPSDPLELVVTGFY--NKPTLSALPSPVVTSGEN-VTLQCGSRL 125
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
+ + EG + + ++ V + +C
Sbjct: 126 RFDR-FILTEEGD--HKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 32.9 bits (75), Expect = 0.15
Identities = 18/152 (11%), Positives = 42/152 (27%), Gaps = 28/152 (18%)
Query: 39 DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNG---EGSSTVNLNFSEEDG 95
+ + + + L I ++ +G Y+ + E S + L
Sbjct: 41 KKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELV------ 94
Query: 96 KLKVPGGKAPRFPKKPTIHQD-------GDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
KPT+ G + ++C + + + K ED
Sbjct: 95 --------VTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFD----GFILCKEGEDEHP 142
Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
++ + + + + + YRC
Sbjct: 143 QCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.0 bits (73), Expect = 0.15
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 115 QDGDLLVMECVLEASPMPD--IIWYQG------TKVIEDTGRIKMSKKSIGKDTYLLRLE 166
+ G+ L + CVL + WY+ + I GR + S K L
Sbjct: 13 ETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSL---R 69
Query: 167 INNPTKDDGGNYRCNACNSIG 187
IN+ T +DGG YRC + G
Sbjct: 70 INDLTVEDGGTYRCGLGVAGG 90
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 31.8 bits (72), Expect = 0.16
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPR 106
LTI+N +SDSG Y + V L+V PR
Sbjct: 75 LTIENSVESDSGLYCCRVEIPGWFNDQKVTF-------SLQVKPELVPR 116
Score = 31.4 bits (71), Expect = 0.25
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 271 ITDPIGPDSGTYRCNVKNE--FGESNANLNLNIEAEAEP 307
I + + DSG Y C V+ F + +L ++ E P
Sbjct: 77 IENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELVP 115
Score = 30.7 bits (69), Expect = 0.42
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 134 IIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
+IW G +V R + D + L I N + D G Y C
Sbjct: 46 LIWTNGHRVTYQKSSRYNLKGHISEGD---VSLTIENSVESDSGLYCC 90
Score = 29.5 bits (66), Expect = 0.96
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKN--F 393
++W + + T + S LKG + L +++ + D+GLY C ++ +
Sbjct: 41 ACQNTLIWTNGH---RVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGW 97
Query: 394 HGELNANLTLNIE 406
+ +L ++
Sbjct: 98 FNDQKVTFSLQVK 110
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 31.7 bits (72), Expect = 0.19
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 336 KAKPMPEIVWFH--EGKELQQTDRISWNVT-LKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
+ + FH +G ++ R+ + L + + L + R ED G Y C
Sbjct: 41 RHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVT 100
Query: 393 F-HGELNANLTLNI 405
F G + ++ L +
Sbjct: 101 FPQGSRSVDIWLRV 114
Score = 31.0 bits (70), Expect = 0.34
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 56 AVLTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLN 89
A L + ++ D G Y + G S + L
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 31.9 bits (72), Expect = 0.19
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
+V + +K + E K K+ ++ E+ E D GTY +++ +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD--EDEGTYTFQIQDGKATGH 123
Query: 295 ANLNLNIEA 303
+ L L +
Sbjct: 124 STLVLIGDV 132
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 31.4 bits (71), Expect = 0.22
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 342 EIVWFHEG---KELQQTDRISWNVTLKGDKYHIRLEVKDP---------RKEDTGLYKCN 389
I W + + VT+ Y+ R+ P R ED G YK +
Sbjct: 31 IIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKAD 90
Query: 390 I 390
I
Sbjct: 91 I 91
Score = 29.5 bits (66), Expect = 0.89
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
L I +++ D+G+YK + ++T
Sbjct: 74 LVISDLRMEDAGDYKADINTQADPYTTTKR 103
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 31.4 bits (71), Expect = 0.22
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 58 LTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLN 89
LT++++ +D+GEY + +G + + L
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLE 105
Score = 30.3 bits (68), Expect = 0.53
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 23/96 (23%)
Query: 326 GKLVVMECKVKAKPMP--EIVWFHEGKEL-------------QQTDRISWNVTLKGDKYH 370
G ++++C + + ++ W + + L DR++ L
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG----- 72
Query: 371 IRLEVKDPRKEDTGLYKCNIKNF-HGELNANLTLNI 405
L ++ DTG Y C + G + L +
Sbjct: 73 --LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 31.1 bits (71), Expect = 0.22
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 117 GDLLVMECVLEASPMPD--IIWYQ---GT---KVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
G+ L + CVL + WY+ G+ + I GR + L I
Sbjct: 15 GESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASL---TIR 71
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQGG 200
+ +D G Y+C A + G
Sbjct: 72 DLRVEDSGTYKCKAYRRCAFNTGV-GYKEGAG 102
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 30.3 bits (68), Expect = 0.29
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 19/89 (21%)
Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
KI E+ V + C I W +D ++ G + DP
Sbjct: 2 KIPIEELEDRVFVNCNT------SITWVEGTVGTLLSDITRLDL---GKRI------LDP 46
Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIEM 407
R G+Y+CN + + + + + ++ M
Sbjct: 47 R----GIYRCNGTDIYKDKESTVQVHYRM 71
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 32.7 bits (73), Expect = 0.30
Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 23/139 (16%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPP--TFIEKPKIRSEQGGKLVVMECKV 335
GTY + + + L L + PP + + R+ G + C V
Sbjct: 265 QEGTYLATIHLPYLQGQVTLELAVYK-------PPKVSLMPATLARAAPGEAPPELLCLV 317
Query: 336 KA-KPMP--EIVWFHEGKEL---QQTDRISWNVTLK--GD-KYHI--RLEVKDPRKEDTG 384
P E+ W G Q+ + W L+ D + L+ E G
Sbjct: 318 SHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHG 377
Query: 385 -LYKCNIKNFHGELNANLT 402
Y C I H L A+
Sbjct: 378 ARYACRIH--HPSLPASGR 394
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.0 bits (70), Expect = 0.32
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
L + N+Q D G Y+ I +K G ++ SE
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSE 105
Score = 28.3 bits (63), Expect = 2.5
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 20/89 (22%)
Query: 319 KIRSEQGGKLVVMECKVKAKP----MPEIVWF-----------HEGKEL--QQTDRISWN 361
KI++ + C+ +V++ + GKE +
Sbjct: 3 KIQAYFNET-ADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGR 61
Query: 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390
+ D L + + + +D GLY+C I
Sbjct: 62 TSFDSD--SWTLRLHNLQIKDKGLYQCII 88
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 30.8 bits (70), Expect = 0.34
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 117 GDLLVMECVLEASPMPD--IIWYQ---GT---KVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
G+ L ++CVL+ WY+ G+ K I GR + K L I+
Sbjct: 15 GESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSL---RIS 71
Query: 169 NPTKDDGGNYRCNACNSIG 187
+ +D G Y+C A S
Sbjct: 72 DLRVEDSGTYKCQADYSPS 90
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 30.8 bits (70), Expect = 0.35
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397
+ +V ++L + +R+S + + + ++D R D G+Y C I +
Sbjct: 43 RSCKTLVETDASEQLVKKNRVS--IRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDP 100
Query: 398 NANLTLNI 405
+T+NI
Sbjct: 101 MFKVTVNI 108
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 30.7 bits (69), Expect = 0.36
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 131 MPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
+++ V R ++ D + L I N T DD G Y C
Sbjct: 42 TNELLRTDERNVTYQKSSRYQLKGDLNKGD---VSLIIKNVTLDDHGTYCC 89
Score = 29.9 bits (67), Expect = 0.66
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 22/102 (21%)
Query: 326 GKLVVMECKVKAKPMPEIV----------WFHEGKELQQTD------RISWNVTLKGDKY 369
GK + C +V W EL +TD + S LKGD
Sbjct: 9 GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLN 68
Query: 370 H--IRLEVKDPRKEDTGLYKCNIKNFHGELN---ANLTLNIE 406
+ L +K+ +D G Y C I+ F G +N L L+I+
Sbjct: 69 KGDVSLIIKNVTLDDHGTYCCRIQ-FPGLMNDKKLELKLDIK 109
Score = 28.7 bits (64), Expect = 1.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 58 LTIKNVQKSDSGEY 71
L IKNV D G Y
Sbjct: 74 LIIKNVTLDDHGTY 87
Score = 26.8 bits (59), Expect = 7.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 271 ITDPIGPDSGTYRCNVKNE--FGESNANLNLNIE 302
I + D GTY C ++ + L L+I+
Sbjct: 76 IKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 30.7 bits (69), Expect = 0.38
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 134 IIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
+IW G V R ++ + + L I N DGG Y C
Sbjct: 47 LIWTNGYTVTHQRNSRYQLKGNISEGN---VSLTIENTVVGDGGPYCC 91
Score = 30.3 bits (68), Expect = 0.52
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPR 106
LTI+N D G Y + + F D L+V PR
Sbjct: 76 LTIENTVVGDGGPYCCVVEIPGA---------FHFVDYMLEVKPELVPR 115
Score = 29.6 bits (66), Expect = 1.1
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNFHG 395
+ ++W + T + + LKG+ + L +++ D G Y C ++ G
Sbjct: 42 YCIRSLIWTNGY---TVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVE-IPG 97
Query: 396 ELN---ANLTLNIEMV 408
+ L + E+V
Sbjct: 98 AFHFVDYMLEVKPELV 113
Score = 28.0 bits (62), Expect = 3.2
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
I + + D G Y C V+ + L ++ E P
Sbjct: 78 IENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 30.7 bits (69), Expect = 0.42
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 129 SPMPDIIWYQGTKVIEDT---GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
+ + I+ GR+K+S K G + L+IN DD +Y C
Sbjct: 45 DSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVS----LQINTLQMDDRNHYTC 95
Score = 29.5 bits (66), Expect = 1.0
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
L I +Q D Y + +G+ +
Sbjct: 78 VSLQINTLQMDDRNHYTCEVTWQTPDGNQVI 108
Score = 28.8 bits (64), Expect = 2.1
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 339 PMPEIVWFHEGKELQQTD---RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
+ + G +QQ R+ + + GD + L++ + +D Y C +
Sbjct: 46 SVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGD---VSLQINTLQMDDRNHYTCEVTWQTP 102
Query: 396 ELNANLTLNIEMVRFIK 412
+ N + I +R K
Sbjct: 103 DGNQVIRDKIIELRVRK 119
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 31.6 bits (71), Expect = 0.44
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 16/92 (17%)
Query: 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWF--HEGKELQ------------QTDRISWNVT 363
P+ GK ++C P + W+ G+ R + T
Sbjct: 10 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYT--AT 67
Query: 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
L D L + + D+ Y C + +
Sbjct: 68 LDADTKQSSLHITASQLSDSASYICVVSDRGS 99
Score = 30.0 bits (67), Expect = 1.6
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG 82
+ K + R ++TL D + L I Q SDS Y + ++
Sbjct: 51 IMTFSENTKSNGRYTATLDADTKQSS----LHITASQLSDSASYICVVSDRGSTL 101
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 30.9 bits (70), Expect = 0.44
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 115 QDGDLLVMECVLEASPMP--DIIWYQ---GT---KVIEDTGRIKMSKKSIGKDTYLLRLE 166
+ G+ L + CVL + D WY+ G+ + I GR + G ++ LR
Sbjct: 13 ETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK-GSKSFSLR-- 69
Query: 167 INNPTKDDGGNYRCNACNS 185
I++ +D G Y+C A
Sbjct: 70 ISDLRVEDSGTYKCQAFYV 88
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 31.7 bits (72), Expect = 0.53
Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 35/182 (19%)
Query: 36 KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY------KVIAKNKNGEGSSTVNLN 89
+S T + L + ++N+ ++DSG Y + K G G+S + +
Sbjct: 63 GISPGKYDTYGSTRKNLR----MILRNLIENDSGVYYCATWDQNYYKKLFGSGTS-LVVT 117
Query: 90 FSEEDGKLKVPGGKAPRFPKKPT------IHQDGDLLVMECVLEAS-PMPDIIWYQ---- 138
+ +K T + + C+ E S I WY+
Sbjct: 118 DKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPS 177
Query: 139 ---------GTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
G+ GR ++ K K + L I+ +D Y C S+
Sbjct: 178 KEMIFLIRQGSDEQNAKSGRYSVNFKKAAKS---VALTISALQLEDSAKYFCALGESLTR 234
Query: 189 SN 190
++
Sbjct: 235 AD 236
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 31.2 bits (69), Expect = 0.71
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
E ++ + + G++VV+ C I W + V G
Sbjct: 3 ELKKDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSE---------VLGSGK 51
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKN 392
I+++ D G Y C+
Sbjct: 52 TLTIQVK----EFGDAGQYTCHKGG 72
Score = 28.5 bits (62), Expect = 5.6
Identities = 35/199 (17%), Positives = 60/199 (30%), Gaps = 30/199 (15%)
Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
LTI+ + D+G+Y + S ++ L +EDG K + PK T
Sbjct: 52 TLTIQVKEFGDAGQYTCHKGGE--VLSHSLLLLHKKEDGIWSTDILKDQKEPKNKT---- 105
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT------YLLRLEINNP 170
+ C + W+ T + T +K S+ S L +
Sbjct: 106 ----FLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGD 161
Query: 171 TKDDGGNYRC--NACNSIGESNANIALNFQGGENG------AGFAPSFIEKPRIIPNESG 222
K+ + C ++ E + I + + F I KP N
Sbjct: 162 NKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQL 221
Query: 223 TLIQMKCKCSAKPRPEVKW 241
+ + EV W
Sbjct: 222 KPL------KNSRQVEVSW 234
Score = 28.2 bits (61), Expect = 6.9
Identities = 28/249 (11%), Positives = 63/249 (25%), Gaps = 35/249 (14%)
Query: 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--ADKLVKESSKIKIIVNEQDDTYEI 267
++ + P+ G ++ + C + W + +++ + I V E
Sbjct: 9 YVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLTIQVKEF------ 60
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK 327
D+G Y C+ E + L E + ++
Sbjct: 61 ---------GDAGQYTCHKGGEVLSHSLLLLHKKE--------DGIWSTDILKDQKEPKN 103
Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
+ C+ K W+ T + + + + G K
Sbjct: 104 KTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNK 163
Query: 388 CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
+ + ++ E + +K K Y F + K
Sbjct: 164 EYEYSVECQEDSACPAAEESLPIEVMVDAVHKL--------KYEQYTSSFFIRDIIKPDP 215
Query: 448 VLTLSVVPV 456
L + P+
Sbjct: 216 PKNLQLKPL 224
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 30.0 bits (67), Expect = 0.82
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 117 GDLLVMECVLEASP--MPDIIWYQG------TKVIEDTGRIKMSKK---SIGKDTY--LL 163
G L + C + W + +++ + M+ +I D
Sbjct: 25 GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFF 84
Query: 164 RLEINNPTKDDGGNYRC 180
+ + + ++D G+Y C
Sbjct: 85 TVTMTDLREEDSGHYWC 101
Score = 29.2 bits (65), Expect = 1.3
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 333 CKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI 390
CK + +V + + + T R + + D + + D R+ED+G Y C I
Sbjct: 47 CKEASALVCIRLVTSSKPRTMAWTSRFT--IWDDPDAGFFTVTMTDLREEDSGHYWCRI 103
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 30.8 bits (69), Expect = 0.95
Identities = 22/172 (12%), Positives = 39/172 (22%), Gaps = 33/172 (19%)
Query: 115 QDGDLLVMECVLEASPMPDIIWYQ---------------GTKVIEDTGRIKMSKKSIGKD 159
+G L + C S P + WY G V++ +
Sbjct: 22 SEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSS 81
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP- 218
+ L + D Y C L+F G P +
Sbjct: 82 FH---LRKASVHWSDSAVYFCAVSA----KGTGSKLSFGKGAKLTVSPNIQNPDPAVYQL 134
Query: 219 --NESGTLIQMKCKCSAK---PRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
++S C + V K + + + + D
Sbjct: 135 RDSKSSDKSV----CLFTDFDSQTNVSQSKDSDVYITDKCV-LDMRSMDFKS 181
Score = 28.5 bits (63), Expect = 5.3
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 24 FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
+ Y +++ + + + S + L +V SDS Y
Sbjct: 54 MLLKYYSGDPVVQGVNGFEAEFSKSDSSFH----LRKASVHWSDSAVY 97
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.5 bits (66), Expect = 1.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 58 LTIKNVQKSDSGEY 71
LTI N + DSG Y
Sbjct: 75 LTISNTNRGDSGVY 88
Score = 28.0 bits (62), Expect = 3.0
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 134 IIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
++ GT++I + + K + + L I+N + D G Y C
Sbjct: 46 LLRTDGTRIISRKSTKYTLLGKVQFGE---VSLTISNTNRGDSGVYCC 90
Score = 28.0 bits (62), Expect = 3.4
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 342 EIVWFHEGKELQQTD------RISWNVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNF 393
EL +TD R S TL G + L + + + D+G+Y C I+
Sbjct: 36 SCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIE-V 94
Query: 394 HGELN---ANLTLNIE 406
G N N+ L +
Sbjct: 95 PGWFNDVKKNVRLELR 110
Score = 27.2 bits (60), Expect = 6.1
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 271 ITDPIGPDSGTYRCNVKNE--FGESNANLNLNIEAEAEP 307
I++ DSG Y C ++ F + N+ L + P
Sbjct: 77 ISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALVP 115
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B
1a6p_A 1t6w_A
Length = 97
Score = 28.9 bits (64), Expect = 1.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGE 81
L IKN+ + DSG Y V + NG
Sbjct: 61 LKIKNLTRDDSGTYNVTVYSTNGT 84
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 30.0 bits (67), Expect = 1.5
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
K S RL TL + L I + +D+ Y
Sbjct: 49 IRSNEREKHSGRLRVTLDTSKKSSS----LLITASRAADTASY 87
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 28.8 bits (65), Expect = 1.7
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 4/48 (8%)
Query: 24 FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
F + S + +S + L I Q DS Y
Sbjct: 46 FLIRQDSYKKENATVGHYSLNFQKPKSSIG----LIITATQIEDSAVY 89
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 28.7 bits (64), Expect = 1.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 56 AVLTIKNVQKSDSGEY 71
L +K+++ DSG Y
Sbjct: 79 CNLLLKDLKPEDSGTY 94
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 29.2 bits (65), Expect = 2.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 56 AVLTIKNVQKSDSGEY 71
VLT+ K + G Y
Sbjct: 90 YVLTLNKFSKENEGYY 105
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 29.6 bits (66), Expect = 2.0
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 4/54 (7%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG 82
+ +TL + S + L + Q SDS Y +
Sbjct: 50 SFTDNKRPEHQGFHATLHKSSSSFH----LQKSSAQLSDSALYYCALFLASSSF 99
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 29.8 bits (67), Expect = 2.3
Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 21/193 (10%)
Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE----NGAGFAPS- 209
S K L I+ +D +Y C + NS S + G + P+
Sbjct: 62 SGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSY----VFGTGTKVTVLGQPKANPTV 117
Query: 210 FIEKPRIIPNESGTLIQMKCKCSAK---PRP-EVKWFKADKLVKESSKIKIIVNEQDDTY 265
+ P +E + C P V W VK + + ++ Y
Sbjct: 118 TLFPP---SSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKY 174
Query: 266 EIICEITDPIG--PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
++ +Y C V +E S + + P F P +S
Sbjct: 175 AASSYLSLTPEQWKSHRSYSCQVTHE--GSTVEKTVAPTECSASTKGPSVFPLAPSSKST 232
Query: 324 QGGKLVVMECKVK 336
GG + C VK
Sbjct: 233 SGGTAALG-CLVK 244
Score = 29.0 bits (65), Expect = 4.5
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK- 336
+ TY CNV ++ + + + + PP + I + + C V
Sbjct: 291 GTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMI-----SRTPEVTCVVVD 345
Query: 337 ---AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI--RLEVKDPRKEDTGLYKC 388
P + W+ +G ++ Y + L V D YKC
Sbjct: 346 VSHEDPQVKFNWYVDGVQVHNAKTKP-REQQYNSTYRVVSVLTVLHQNWLDGKEYKC 401
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 29.2 bits (65), Expect = 2.6
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
+ + S RL+++L + R L I Q DS Y
Sbjct: 48 LIQSSQREQTSGRLNASLDKSSGRST----LYIAASQPGDSATY 87
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 28.3 bits (63), Expect = 2.8
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
+ + ++D+G YKC + L+ +++L +
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
Score = 27.9 bits (62), Expect = 3.9
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 117 GDLLVMECVLEAS---PMPDIIWYQG------TKVIEDTGRIKMSKK---SIGKDTY--L 162
G+ + + C + W + +I G + ++
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 163 LRLEINNPTKDDGGNYRC 180
+ I ++DD G Y+C
Sbjct: 75 FVVNIAQLSQDDSGRYKC 92
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 28.2 bits (62), Expect = 2.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 58 LTIKNVQKSDSGEYKVIAKNKNGE 81
L+IK+ + DSG Y + N G+
Sbjct: 77 LSIKSAKLQDSGHYLLEITNTGGK 100
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 28.8 bits (64), Expect = 3.2
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
M K R ++ L + + L I++ Q SDS Y
Sbjct: 49 MSIFSDGDKKEGRFTAHLNKASLHVS----LHIRDSQPSDSALY 88
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 28.7 bits (64), Expect = 3.2
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
Y+ L+ R SS L + + Y L +K +Q DS Y
Sbjct: 46 SYNVLDGLEEKGRFSSFLSRSKGYSY----LLLKELQMKDSASY 85
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 28.0 bits (62), Expect = 3.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 58 LTIKNVQKSDSGEY 71
LT+ K + G Y
Sbjct: 87 LTLNKFSKENEGYY 100
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 28.4 bits (63), Expect = 4.3
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
K R+S+TL + Y L IK Q DS Y
Sbjct: 49 MTLNGDEKKKGRISATLNTKEGYSY----LYIKGSQPEDSATY 87
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 28.5 bits (63), Expect = 4.4
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
+ R S+TL +D L I D+ Y
Sbjct: 50 LVDQKDKTSNGRYSATLDKDAKHST----LHITATLLDDTATY 88
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 28.1 bits (62), Expect = 5.1
Identities = 11/100 (11%), Positives = 28/100 (28%), Gaps = 17/100 (17%)
Query: 106 RFPKKPTI------HQDGDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSI 156
P++ + G L + C V +P ++ +G K + ++
Sbjct: 84 WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE--------LKREPA 135
Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
+ + + G + C + + N
Sbjct: 136 VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN 175
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II,
I immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 28.5 bits (63), Expect = 5.2
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
+++ K + RL ST + L IK+ Q DSG Y A++
Sbjct: 46 LFYLAQGTKENGRLKSTFNSKERYST----LHIKDAQLEDSGTYFCAAEDGGSGNKLI 99
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA
binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Length = 111
Score = 27.2 bits (60), Expect = 6.1
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 251 SSKIKIIVNEQDDT-YEIICEITDPIGPDSGTYRCNVKNEFGESNANL------NLNIEA 303
+ ++ I+ +DD E I + PDS + N+ NA L + A
Sbjct: 30 TKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSA 89
Query: 304 EAEPEGDPPTFIEKPKIRSEQ 324
+ G P F+E K +Q
Sbjct: 90 QENIAGIPSAFLELKKEEIKQ 110
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C*
3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 28.1 bits (62), Expect = 6.3
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 28 MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVI 74
+++ S K + RL S + L I++ Q DSG Y
Sbjct: 48 LFYLASGTKENGRLKSAFDSKERYST----LHIRDAQLEDSGTYFCA 90
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.3 bits (61), Expect = 7.8
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 4/48 (8%)
Query: 24 FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
F + S + +S + L I Q DS Y
Sbjct: 46 FLIRQDSYKKENATVGHYSLNFQKPKSSIG----LIITATQIEDSAVY 89
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 27.5 bits (61), Expect = 8.4
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
S K R + + + + L I + Q DS Y
Sbjct: 49 IRPVSNKKEDGRFTIFFNKREKKFS----LHIADSQPGDSATY 87
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 27.8 bits (62), Expect = 9.9
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 257 IVNEQDDTYE-IICEITDPIGPDSGTYRC 284
+++ Y+ I C I G R
Sbjct: 132 LLDLDIKKYDLIFCLQEPDIHRIDGLKRM 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.392
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,006,144
Number of extensions: 477721
Number of successful extensions: 3264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1847
Number of HSP's successfully gapped: 1036
Length of query: 540
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 442
Effective length of database: 3,965,535
Effective search space: 1752766470
Effective search space used: 1752766470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.4 bits)