BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6704
         (332 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
           (4fe-4s) Cluster In The Crystal
 pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
           (4fe-4s) Cluster In The Crystal
 pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
           Nitroisocitrate Bound
          Length = 754

 Score = 27.7 bits (60), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 204 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 239


>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
 pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
          Length = 753

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 203 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 238


>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
          Length = 753

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 203 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 238


>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
          Length = 753

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 203 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 238


>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
          Length = 754

 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 204 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 239


>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
           Nitrocitrate Bound
 pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
           Nitrocitrate Bound
          Length = 754

 Score = 27.7 bits (60), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 204 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 239


>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
 pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
 pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
           Nitroisocitrate Bound
          Length = 754

 Score = 27.7 bits (60), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 204 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 239


>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
           Mechanism
 pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
           Mechanism
          Length = 754

 Score = 27.7 bits (60), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE 272
           G+ + G    WT+ KD+ LK V G LT+    G  +E
Sbjct: 204 GVKLTGSLSGWTSPKDVILK-VAGILTVKGGTGAIVE 239


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,049,946
Number of Sequences: 62578
Number of extensions: 422076
Number of successful extensions: 717
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 9
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)