BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6704
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82349|SGCB_MOUSE Beta-sarcoglycan OS=Mus musculus GN=Sgcb PE=1 SV=1
Length = 320
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 28/320 (8%)
Query: 16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
K S+R+K + +RN N+ H+ NF+AG + D TGL K +I LL++ A
Sbjct: 21 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFILA 78
Query: 76 LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
+INL++TL + ++RIG G +++E +++ D+G LYK ++
Sbjct: 79 VINLLITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 135
Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
L ITG V F T+ LS+E +T+ +DP H +FST + +
Sbjct: 136 NLVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTHNILFSTDYET 188
Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
+F LP GVK L+VQ+ T RI S DL ++ + ++GNEG+ + G+TI + D
Sbjct: 189 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGD 248
Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
+ LK+ N ++ + + +LP S +KLC+C G +F+V+
Sbjct: 249 VELKAEN---SIILNGTVMVSPTRLPSSSSGDQSGSGDW-VRYKLCMC-ADGTLFKVQVT 303
Query: 312 DIMSHNACHNINTSPEHHPC 331
HN+ +PC
Sbjct: 304 G-------HNMGCQVSDNPC 316
>sp|Q5R9U1|SGCB_PONAB Beta-sarcoglycan OS=Pongo abelii GN=SGCB PE=2 SV=1
Length = 319
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 24/315 (7%)
Query: 16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
K S+R+K + +RN N+ H+ NF+AG + D TGL K +I LL++ A
Sbjct: 20 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIILLFILA 77
Query: 76 LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
+INL++TL + ++RIG G +++E +++ D+G LYK ++
Sbjct: 78 VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 134
Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
L ITG V F T+ LS+E +T+ +DP +FST + +
Sbjct: 135 NLVITGNNQPIV-----FQQGTTK--LSVENNKTSITSDIGMQFFDPRTQNILFSTDYET 187
Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
+F LP GVK L+VQ+ T RI S DL ++ + ++GNEG+ + G+TI + +
Sbjct: 188 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGN 247
Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
+ LK+ N ++ + + +LP L S +KLC+C G +F+V+
Sbjct: 248 MELKAEN---SIILNGSVMVSTTRLPSSSSGDQLGSG-DWVRYKLCMC-ADGTLFKVQ-- 300
Query: 312 DIMSHNACHNINTSP 326
+ S N I+ +P
Sbjct: 301 -VTSQNMGCQISDNP 314
>sp|Q60538|SGCB_MESAU Beta-sarcoglycan OS=Mesocricetus auratus GN=SGCB PE=2 SV=1
Length = 320
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 28/320 (8%)
Query: 16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
K S+R+K + +RN N+ H+ NF+AG + D TGL K +I LL++ A
Sbjct: 21 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFILA 78
Query: 76 LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
+INL++TL + ++RIG G +++E +++ D+G LYK ++
Sbjct: 79 VINLLITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 135
Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
L ITG V F T+ LS+E +T+ +DP +FST + +
Sbjct: 136 NLVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTQNILFSTDYET 188
Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
+F LP GVK L+VQ+ T RI S DL ++ + ++GNEG+ + G+TI + +
Sbjct: 189 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGN 248
Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
+ LK+ N ++ + + +LP +KLC+C G +F+V+
Sbjct: 249 VELKAEN---SIILNGTVMVSPTRLPSSSSGDQSGGGDW-VRYKLCMC-ADGTLFKVQVT 303
Query: 312 DIMSHNACHNINTSPEHHPC 331
HN+ +PC
Sbjct: 304 G-------HNMGCQVADNPC 316
>sp|Q28635|SGCB_RABIT Beta-sarcoglycan OS=Oryctolagus cuniculus GN=SGCB PE=1 SV=1
Length = 318
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 151/326 (46%), Gaps = 40/326 (12%)
Query: 16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
K S+R+K + +RN N+ H+ NF+AG + D TGL K +I LL+L A
Sbjct: 19 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFLLA 76
Query: 76 LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
+INL++TL + ++RIG G +++E +++ D+G LYK ++
Sbjct: 77 VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 133
Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
L ITG V F T+ LS+E +T+ +DP +FST + +
Sbjct: 134 NLVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTQNILFSTDYET 186
Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
+F LP GVK L+VQ+ T RI S DL ++ + ++GNEG+ + G+TI +
Sbjct: 187 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEF----- 241
Query: 252 IFLKSVNGSLTLAAENGIFL------EVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRI 305
+ G++ L AEN I L +LP L +KLC+C G +
Sbjct: 242 ----HMGGNMELKAENSIILNGTVMVSTTRLPSSSSADQLGGG-DWVRYKLCMCAD-GTL 295
Query: 306 FRVKADDIMSHNACHNINTSPEHHPC 331
F+V+ N+ +PC
Sbjct: 296 FKVQVTG-------QNVGCQVSDNPC 314
>sp|Q16585|SGCB_HUMAN Beta-sarcoglycan OS=Homo sapiens GN=SGCB PE=1 SV=1
Length = 318
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 24/315 (7%)
Query: 16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
K S+R+K + +R+ N+ H+ NF+AG + D TGL K +I LL++ A
Sbjct: 19 KKSMREKAVERRSVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIILLFILA 76
Query: 76 LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
+INL++TL + ++RIG G +++E +++ D+G LYK ++
Sbjct: 77 VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 133
Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
L ITG V F T+ LS+E +T+ +DP +FST + +
Sbjct: 134 NLVITGNNQPIV-----FQQGTTK--LSVENNKTSITSDIGMQFFDPRTQNILFSTDYET 186
Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
+F LP GVK L+VQ+ T RI S DL ++ + ++GNEG+ + G+TI + +
Sbjct: 187 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGN 246
Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
+ LK+ N ++ + + +LP L S +KLC+C G +F+V+
Sbjct: 247 MELKAEN---SIILNGSVMVSTTRLPSSSSGDQLGSG-DWVRYKLCMC-ADGTLFKVQ-- 299
Query: 312 DIMSHNACHNINTSP 326
+ S N I+ +P
Sbjct: 300 -VTSQNMGCQISDNP 313
>sp|A6QP70|SGCB_BOVIN Beta-sarcoglycan OS=Bos taurus GN=SGCB PE=2 SV=1
Length = 317
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 151/327 (46%), Gaps = 42/327 (12%)
Query: 16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
K S+R+K + +RN N+ H+ NF+AG + D TGL K +I LL++ A
Sbjct: 18 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFILA 75
Query: 76 LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
+INL++TL + ++RIG G +++E +++ D+G LYK ++
Sbjct: 76 VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 132
Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
L ITG V F T+ LS+ +T+ +DP +FST + +
Sbjct: 133 NLVITGNNQPIV-----FQQGTTK--LSVGKNKTSITSDTGMQFFDPRTQNILFSTDYET 185
Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
+F LP GVK L+VQ+ T RI S DL ++ ++GNEG+ + G+TI +
Sbjct: 186 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVGGRAIVRGNEGVFIMGKTIQF----- 240
Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHN-------AAFKLCVCMPGGR 304
+ G++ L AEN I L + V N S+ + +KLC+C G
Sbjct: 241 ----HMGGNMELKAENSIILNGTVM--VSTNRLPSSSSGDQFGGDDWVRYKLCMCAD-GT 293
Query: 305 IFRVKADDIMSHNACHNINTSPEHHPC 331
+FRV+ N+ +PC
Sbjct: 294 LFRVQVTG-------QNMGCQTSDNPC 313
>sp|Q9CYP7|SESN3_MOUSE Sestrin-3 OS=Mus musculus GN=Sesn3 PE=2 SV=1
Length = 492
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 164 GVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTL 223
G R+ +V F V D + I +T ++FG+ + +L+ R R+ EDD T
Sbjct: 223 GFRLISVSSFCVCDLANDNSIENTSLAGSNFGIVDSLGELEALMERMKRLQEDREDDETT 282
Query: 224 RSETYTRLKGNEGISM 239
R E TR + + S+
Sbjct: 283 REEMTTRFEKEKKESL 298
>sp|P13368|7LESS_DROME Protein sevenless OS=Drosophila melanogaster GN=sev PE=1 SV=2
Length = 2554
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 116 GKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNV 175
G+L +D GY + K+ +R GR+ + V +EPE VR+ +
Sbjct: 1625 GQLAQDSGYLYAVKNWSIRAYGRRRQQLEYTV-----------ELEPEEVRLLQAHNYQA 1673
Query: 176 YDPTDHLPIFSTG 188
Y P + L + S+G
Sbjct: 1674 YPPKNCLLLPSSG 1686
>sp|A9A0N0|LEPA_DESOH Elongation factor 4 OS=Desulfococcus oleovorans (strain DSM 6200 /
Hxd3) GN=lepA PE=3 SV=1
Length = 598
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 144 HIDVNFGVNRT------RRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLP 197
H+D ++ V+R +L +GV V N+Y DH D +
Sbjct: 81 HVDFSYEVSRAIASCEGALILIDASQGVEAQTVA--NLYLAVDH-----------DLEII 127
Query: 198 RGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTA 248
+ K+D+ R++ IE+DL L S ++ EG+ +E T A
Sbjct: 128 PVINKIDLISADVERVMEQIEEDLGLDSSAAVKVSAKEGVGIEDLMETIVA 178
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2
SV=1
Length = 674
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 249 DKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSN 288
D + S NGS+TLA+EN I L L + KK + L++N
Sbjct: 171 DVSVSFTSSNGSVTLASENIIALASDLLNWTKKEMLLEAN 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,382,558
Number of Sequences: 539616
Number of extensions: 5575048
Number of successful extensions: 11494
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11478
Number of HSP's gapped (non-prelim): 16
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)