Query psy6704
Match_columns 332
No_of_seqs 104 out of 121
Neff 5.1
Searched_HMMs 46136
Date Sat Aug 17 00:54:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3950|consensus 100.0 1.6E-86 3.4E-91 612.3 20.9 259 47-332 20-292 (292)
2 PF04790 Sarcoglycan_1: Sarcog 100.0 6E-84 1.3E-88 609.8 27.9 249 51-320 1-264 (264)
3 PF04790 Sarcoglycan_1: Sarcog 97.5 0.011 2.5E-07 56.8 17.9 135 53-199 6-170 (264)
4 PF10106 DUF2345: Uncharacteri 92.6 0.15 3.4E-06 45.1 4.2 39 229-267 92-132 (155)
5 KOG3950|consensus 92.6 3.9 8.4E-05 39.5 13.6 189 47-257 23-241 (292)
6 PF10106 DUF2345: Uncharacteri 86.7 1.7 3.6E-05 38.5 5.8 43 229-271 74-119 (155)
7 PF12059 DUF3540: Protein of u 79.5 19 0.00041 33.5 9.9 80 175-261 32-114 (202)
8 COG4253 Uncharacterized protei 77.2 4.7 0.0001 39.3 5.4 89 171-266 107-198 (278)
9 TIGR02856 spore_yqfC sporulati 64.8 17 0.00037 29.2 5.2 55 218-276 12-67 (85)
10 PF07873 YabP: YabP family; I 56.1 17 0.00037 27.6 3.6 39 229-267 4-43 (66)
11 PF12662 cEGF: Complement Clr- 48.6 9.8 0.00021 23.9 1.0 22 296-324 3-24 (24)
12 COG2911 Uncharacterized protei 48.0 1.9E+02 0.0041 34.2 11.8 38 229-266 1052-1089(1278)
13 TIGR02972 TMAO_torE trimethyla 44.9 35 0.00076 24.9 3.5 33 57-89 8-42 (47)
14 PF12273 RCR: Chitin synthesis 42.7 19 0.0004 30.7 2.2 11 62-72 2-12 (130)
15 PF06796 NapE: Periplasmic nit 40.8 47 0.001 25.1 3.8 35 54-88 13-49 (56)
16 COG4093 Uncharacterized protei 39.3 1.5E+02 0.0032 29.8 8.0 143 54-204 7-186 (338)
17 PF11446 DUF2897: Protein of u 39.0 32 0.0007 25.7 2.7 20 62-81 3-22 (55)
18 KOG3591|consensus 38.9 1.6E+02 0.0034 26.8 7.7 86 141-247 74-162 (173)
19 PF08622 Svf1: Svf1-like; Int 37.7 4.4E+02 0.0095 26.5 11.2 91 94-191 17-124 (325)
20 PF09680 Tiny_TM_bacill: Prote 37.6 28 0.0006 22.1 1.8 13 61-73 5-17 (24)
21 KOG3825|consensus 35.6 48 0.001 33.0 4.0 42 259-300 117-160 (316)
22 TIGR01732 tiny_TM_bacill conse 35.5 35 0.00076 22.0 2.0 10 67-76 10-19 (26)
23 PF12273 RCR: Chitin synthesis 35.2 25 0.00055 29.9 1.9 22 65-86 2-23 (130)
24 PF13345 DUF4098: Domain of un 35.1 1.7E+02 0.0036 21.1 6.2 12 251-262 63-74 (76)
25 TIGR02973 nitrate_rd_NapE peri 32.7 83 0.0018 22.5 3.8 32 58-89 4-37 (42)
26 KOG4684|consensus 32.6 41 0.0009 32.1 2.9 42 48-90 195-236 (275)
27 TIGR01478 STEVOR variant surfa 32.3 43 0.00093 33.1 3.1 21 67-87 264-284 (295)
28 COG1934 Uncharacterized protei 32.1 4E+02 0.0086 24.4 10.4 42 125-169 25-66 (173)
29 PRK10834 vancomycin high tempe 31.8 51 0.0011 31.5 3.5 28 59-87 2-29 (239)
30 PTZ00370 STEVOR; Provisional 31.5 45 0.00097 33.0 3.1 21 67-87 260-280 (296)
31 PF05297 Herpes_LMP1: Herpesvi 29.5 18 0.00039 36.0 0.0 16 75-92 114-129 (381)
32 PF00858 ASC: Amiloride-sensit 29.3 63 0.0014 31.5 3.8 27 59-85 20-46 (439)
33 PF09788 Tmemb_55A: Transmembr 29.2 57 0.0012 31.7 3.3 32 48-79 183-215 (256)
34 PF14102 Caps_synth_CapC: Caps 28.4 47 0.001 28.4 2.4 20 54-73 58-77 (121)
35 PHA02673 ORF109 EEV glycoprote 28.2 50 0.0011 29.9 2.6 27 60-86 28-54 (161)
36 PF05351 GMP_PDE_delta: GMP-PD 27.8 1.5E+02 0.0033 26.7 5.6 21 170-190 11-31 (157)
37 PRK13717 conjugal transfer pro 26.6 73 0.0016 27.9 3.2 31 59-90 14-44 (128)
38 COG4253 Uncharacterized protei 26.1 1.4E+02 0.0031 29.3 5.5 55 217-271 113-171 (278)
39 PF12751 Vac7: Vacuolar segreg 25.3 1.8E+02 0.004 29.9 6.2 55 58-116 297-351 (387)
40 TIGR02892 spore_yabP sporulati 24.5 1.7E+02 0.0037 23.6 4.8 47 221-277 3-49 (85)
41 PF01445 SH: Viral small hydro 24.3 1.1E+02 0.0024 23.0 3.4 21 68-88 11-31 (57)
42 PF05656 DUF805: Protein of un 23.4 1.1E+02 0.0025 24.9 3.8 36 49-86 68-103 (120)
43 PRK13726 conjugal transfer pil 23.3 96 0.0021 28.5 3.6 36 63-102 16-51 (188)
44 COG3420 NosD Nitrous oxidase a 23.1 8.4E+02 0.018 25.1 15.0 120 130-275 50-181 (408)
45 COG1025 Ptr Secreted/periplasm 22.2 1.1E+02 0.0024 34.8 4.3 39 291-330 21-60 (937)
46 COG3595 Uncharacterized conser 22.0 8.1E+02 0.017 24.5 13.1 20 125-145 119-138 (318)
47 PF11174 DUF2970: Protein of u 21.5 54 0.0012 24.6 1.3 39 31-81 18-56 (56)
48 PF06072 Herpes_US9: Alphaherp 21.2 1.1E+02 0.0024 23.4 2.9 18 56-73 25-42 (60)
49 PF06422 PDR_CDR: CDR ABC tran 21.1 1.4E+02 0.003 24.5 3.8 46 57-102 41-87 (103)
50 COG4384 Mu-like prophage prote 20.6 6.5E+02 0.014 23.6 8.3 22 157-178 110-131 (203)
51 PF03699 UPF0182: Uncharacteri 20.6 71 0.0015 35.6 2.5 13 229-241 495-507 (774)
52 TIGR02227 sigpep_I_bact signal 20.4 4.7E+02 0.01 22.8 7.3 22 76-97 10-32 (163)
53 PRK14772 lipoprotein signal pe 20.1 3.2E+02 0.007 25.2 6.3 48 52-102 13-60 (190)
54 PLN03160 uncharacterized prote 20.1 49 0.0011 30.9 1.0 32 57-88 33-64 (219)
No 1
>KOG3950|consensus
Probab=100.00 E-value=1.6e-86 Score=612.32 Aligned_cols=259 Identities=24% Similarity=0.396 Sum_probs=245.7
Q ss_pred CCCCcccceeecchhhHHHHHHHHHHHHHHHHHHHHHHhheeeeeC-CCCceeEEEecCCeEEEeeeeece-eeeeecce
Q psy6704 47 PGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIG-WGMETIEMLPLLNMVKLYGDIDLG-KLYKDDGY 124 (332)
Q Consensus 47 ~~~~l~~~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~-~l~~~~g~ 124 (332)
.+.++|++|||||||||||+|||||||++|+||+|||||++||||+ +|||+|+|++ +|||++|+++|+ +||++ +
T Consensus 20 ~~~~~y~vGiyGWRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~Fs~dGmG~Lkit~--~GirleG~sefl~pl~ak--e 95 (292)
T KOG3950|consen 20 VGAQVYKVGIYGWRKRCLYTFVLLLMILIVVNLALTIWILKVMNFSPDGMGNLKITK--KGIRLEGDSEFLQPLYAK--E 95 (292)
T ss_pred CCceEEEEEeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccceEEcc--CcEEEechhhhhhhhhhh--h
Confidence 6899999999999999999999999999999999999999999999 9999999988 799999999997 89996 9
Q ss_pred eeecCCCCeEEEeeCCcCEEEEeecCCCceeeeEEEcCCceEEEeeeeEEEeCCCCCceeEEecCCcceEecCCccccee
Q psy6704 125 FSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLD 204 (332)
Q Consensus 125 I~s~~d~~L~i~S~~~~~V~l~~~~~~g~~~~~L~v~~~~~~~~~~~~F~V~d~~~g~~lFsad~~~~ev~ip~g~~~L~ 204 (332)
|+|++|+||.++|+| ||+||+||.+|+++++|+++++++++++ ++|||+|. +||+||+||+ .|+++ |+++|+
T Consensus 96 i~Sr~~~~l~~~S~r--nvtvnarn~~g~v~~~l~lgp~~ve~~~-~~Fev~~~-dgk~LFsad~--dEv~v--gae~LR 167 (292)
T KOG3950|consen 96 IHSRPGSPLYLQSAR--NVTVNARNPNGKVTGQLILGPKKVEAQC-KRFEVNDV-DGKLLFSADE--DEVVV--GAEKLR 167 (292)
T ss_pred hhcCCCCceEEEecc--CeeEEccCCCCceeeeEEechHHHhhhh-ceeEEecC-CCcEEEEecc--ceeEe--eeeeeE
Confidence 999999999999999 9999999999999999999999999998 99999998 8999999999 49999 999999
Q ss_pred ---------eeeEEeceeecCCCCCceEeecce-EEEEcCceeEEEece--EEEEeecceEEEecCceEEEecCCceEEe
Q psy6704 205 ---------VQQVRTSRIISPIEDDLTLRSETY-TRLKGNEGISMEGRT--ITWTADKDIFLKSVNGSLTLAAENGIFLE 272 (332)
Q Consensus 205 ---------~~~V~T~~Irs~~~~~L~LeS~tr-L~~~g~eGV~i~a~~--i~~~a~~dI~L~S~~G~i~Lda~~gI~i~ 272 (332)
.|+||||+|||+|+++|||||||| |+|+||+||+|.|+| |++.|.+||.|+|.||+|+|||++ |.
T Consensus 168 v~g~~GavF~~sveTp~VRa~P~~~LRLESPTRsl~m~Apk~v~i~a~AG~iea~~~~di~~~s~dGeirLeas~---I~ 244 (292)
T KOG3950|consen 168 VLGAEGAVFEHSVETPHVRADPFQELRLESPTRSLSMEAPKGVEIQAAAGNIEATCLTDLRLESKDGEIRLEASK---IR 244 (292)
T ss_pred eccCCcccccccccCCcccCCCCccccccCCcceeeeecCCCceeeeccCCceEEEeeeeeEeccCceEEEeece---ee
Confidence 489999999999999999999999 999999999999998 777788999999999999999999 77
Q ss_pred cCCcccccccccccCCCCCcceEEeEecCCCeEEEEecCCCCccceeeccCCCCCCCCCC
Q psy6704 273 VKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNINTSPEHHPCR 332 (332)
Q Consensus 273 ~~~LP~~~~~~~~~s~~~~~~yklCvC~p~GkLFlv~~~~~~~~~tC~~~~~~~~~~pC~ 332 (332)
|++||.++.+ ++++.|.+||+||| ||||||+++|+.+ ++|+ .++++|.
T Consensus 245 lp~L~~g~~~---psgS~q~v~eiCvC-~nGkLfLs~Ag~~---stCq-----~~s~iC~ 292 (292)
T KOG3950|consen 245 LPKLPTGSYT---PSGSRQKVFEICVC-PNGKLFLSQAGPG---STCQ-----IDSSICL 292 (292)
T ss_pred cccccCCCCC---CCCCcceEEEEEEe-cCCcEEEeccCCC---Cccc-----ccccccC
Confidence 8999999744 66777899999999 7999999999876 7997 7889994
No 2
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=100.00 E-value=6e-84 Score=609.81 Aligned_cols=249 Identities=33% Similarity=0.554 Sum_probs=230.3
Q ss_pred cccceeecchhhHHHHHHHHHHHHHHHHHHHHHHhheeeeeC-CCCceeEEEecCCeEEEeeeeece-eeeeecceeeec
Q psy6704 51 PSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIG-WGMETIEMLPLLNMVKLYGDIDLG-KLYKDDGYFSSF 128 (332)
Q Consensus 51 l~~~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~-~l~~~~g~I~s~ 128 (332)
+|+||||||||||||+||+||||++|+||||||||++||||+ +|||+|||+++ +.++|+|++||. ++|+ ++|+||
T Consensus 1 ~~~~Gi~Gwrk~cly~~vllL~il~iiNL~LTiwIl~Vl~~~~~Gm~~l~~~~~-g~~~f~g~~~~~~~l~~--~~I~s~ 77 (264)
T PF04790_consen 1 LYKTGIYGWRKRCLYLFVLLLFILAIINLALTIWILKVLRFSSNGMGSLEFIPD-GLRLFEGESEFLQPLYA--SEIHSF 77 (264)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhheeeecccCccccEEEecC-CeEEEcCceeEeeeeee--ceeeee
Confidence 689999999999999999999999999999999999999999 99999999985 556669999996 7888 599999
Q ss_pred CCCCeEEEeeCCcCEEEEeecCCCceeeeEEEcCCc-eEEEeeeeEEEeCCCCCceeEEecCCcce---------EecCC
Q psy6704 129 KDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEG-VRVTNVKEFNVYDPTDHLPIFSTGFRSAD---------FGLPR 198 (332)
Q Consensus 129 ~d~~L~i~S~~~~~V~l~~~~~~g~~~~~L~v~~~~-~~~~~~~~F~V~d~~~g~~lFsad~~~~e---------v~ip~ 198 (332)
+|+||+|+|++ ||++++||++|+.++||+|++++ ++.++ ++|+|+||++|++||+||+ |+ |+.|+
T Consensus 78 ~d~~l~i~s~~--~v~~~~r~~~g~~~~~l~v~~~~~v~~~~-~~F~V~d~~~g~~lFsad~--~~v~v~~~~lrv~~~~ 152 (264)
T PF04790_consen 78 RDSPLVIQSSR--NVTLNARNENGSVTSRLVVGPDGTVEAQS-NRFEVKDPRDGKTLFSADR--PEVVVGAEKLRVTGPE 152 (264)
T ss_pred cCCCEEEEecC--ceEEEEecCCCcccceEEECCCccEEEec-CeEEEEcCCCCceEEEecC--CceEEeeeeEEecCCc
Confidence 99999999987 99999999999999999999999 55555 9999999999999999999 67 67788
Q ss_pred cccceeeeeEEeceeecCCCCCceEeecce-EEEEcCceeEEEece--EEEEeecceEEEecCceEEEecCCceEEecCC
Q psy6704 199 GVKKLDVQQVRTSRIISPIEDDLTLRSETY-TRLKGNEGISMEGRT--ITWTADKDIFLKSVNGSLTLAAENGIFLEVKK 275 (332)
Q Consensus 199 g~~~L~~~~V~T~~Irs~~~~~L~LeS~tr-L~~~g~eGV~i~a~~--i~~~a~~dI~L~S~~G~i~Lda~~gI~i~~~~ 275 (332)
|+ |.+++||||+||||+++||+|||||| |+|+|||||+|+|++ |+|+|.+||+|+|++|+|+|||+ |||+ ++
T Consensus 153 G~--l~~~~v~T~~Irs~~~~~L~leS~trsL~~~a~egV~i~a~ag~I~~~a~~di~L~S~~G~i~Lda~-~I~l--~~ 227 (264)
T PF04790_consen 153 GA--LFEKSVQTPRIRSPPNEDLRLESPTRSLSMRAPEGVHIEAKAGDIEASARQDISLNSTDGSIVLDAE-GIRL--PN 227 (264)
T ss_pred cE--EEeeeEEeccccCCCCcccccccCCcEEEEECCCCeEEEeccCcEEEEecCCEEEEecCCeEEEecC-eEEe--CC
Confidence 88 88999999999999999999999999 999999999999999 99999999999999999999995 5776 59
Q ss_pred cccccccccccCCCCCcceEEeEecCCCeEEEEecCCCCccceee
Q psy6704 276 LPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACH 320 (332)
Q Consensus 276 LP~~~~~~~~~s~~~~~~yklCvC~p~GkLFlv~~~~~~~~~tC~ 320 (332)
||+++++ ++.++.+|||||| |+|||||+|++.+ .|||
T Consensus 228 LP~~~~~----~~~~~~~y~lCvC-~~GkLF~v~~~~~---~~c~ 264 (264)
T PF04790_consen 228 LPISSSP----SGSRQGQYKLCVC-PNGKLFLVPAGSG---STCQ 264 (264)
T ss_pred CccCCCC----CCCCCccEEEEEC-CCCCEEEeeCCCC---CCCC
Confidence 9999865 3444569999999 8999999999998 4795
No 3
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=97.46 E-value=0.011 Score=56.77 Aligned_cols=135 Identities=15% Similarity=0.186 Sum_probs=75.2
Q ss_pred cceeecchhhHHHHHHHHHHHHHHHHHHH---HHHhh----eeeeeC-CCCceeEEEecCCeEEEeeeeeceeeeeecc-
Q psy6704 53 HTGLHDGKSFTFWALIGLLYLFALINLVL---TLTLM----TMLRIG-WGMETIEMLPLLNMVKLYGDIDLGKLYKDDG- 123 (332)
Q Consensus 53 ~~Gi~GwRk~cly~~vllL~il~viNL~L---TiwIl----~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~~l~~~~g- 123 (332)
-.|+|.|=.||+.+++++|+|+-++=-+. .+||- .-|+|. +| -.+|..+.+.++ ......+....+
T Consensus 6 i~Gwrk~cly~~vllL~il~iiNL~LTiwIl~Vl~~~~~Gm~~l~~~~~g--~~~f~g~~~~~~---~l~~~~I~s~~d~ 80 (264)
T PF04790_consen 6 IYGWRKRCLYLFVLLLFILAIINLALTIWILKVLRFSSNGMGSLEFIPDG--LRLFEGESEFLQ---PLYASEIHSFRDS 80 (264)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhheeeecccCccccEEEecCC--eEEEcCceeEee---eeeeceeeeecCC
Confidence 36999999999999999988875544322 34443 458999 64 344322112211 111111111100
Q ss_pred --eeeecCCCCeEEEe-eCCcC------------E-----EEEeecC-CCceeeeEEEcCCceEEEeeeeEEEeCCCCCc
Q psy6704 124 --YFSSFKDSGLRITG-RQGGS------------V-----HIDVNFG-VNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHL 182 (332)
Q Consensus 124 --~I~s~~d~~L~i~S-~~~~~------------V-----~l~~~~~-~g~~~~~L~v~~~~~~~~~~~~F~V~d~~~g~ 182 (332)
+|+| ++++.+.. ++++. + .+.+++. .|. .-++.+.+.+++.+ +.++|..| .|.
T Consensus 81 ~l~i~s--~~~v~~~~r~~~g~~~~~l~v~~~~~v~~~~~~F~V~d~~~g~--~lFsad~~~v~v~~-~~lrv~~~-~G~ 154 (264)
T PF04790_consen 81 PLVIQS--SRNVTLNARNENGSVTSRLVVGPDGTVEAQSNRFEVKDPRDGK--TLFSADRPEVVVGA-EKLRVTGP-EGA 154 (264)
T ss_pred CEEEEe--cCceEEEEecCCCcccceEEECCCccEEEecCeEEEEcCCCCc--eEEEecCCceEEee-eeEEecCC-ccE
Confidence 2455 44444433 11111 1 1233454 344 46677777888888 99999998 454
Q ss_pred eeEEecCCcceEecCCc
Q psy6704 183 PIFSTGFRSADFGLPRG 199 (332)
Q Consensus 183 ~lFsad~~~~ev~ip~g 199 (332)
+|.-.-++|-+.-|.+
T Consensus 155 -l~~~~v~T~~Irs~~~ 170 (264)
T PF04790_consen 155 -LFEKSVQTPRIRSPPN 170 (264)
T ss_pred -EEeeeEEeccccCCCC
Confidence 8887776666665533
No 4
>PF10106 DUF2345: Uncharacterized protein conserved in bacteria (DUF2345); InterPro: IPR018769 This entry represents the C-terminal domain of a subset of the Rhs element Vgr protein family found only in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often encoded far from the type VI secretion locus.
Probab=92.60 E-value=0.15 Score=45.07 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=19.9
Q ss_pred EEEEcCceeEEEe--ceEEEEeecceEEEecCceEEEecCC
Q psy6704 229 TRLKGNEGISMEG--RTITWTADKDIFLKSVNGSLTLAAEN 267 (332)
Q Consensus 229 L~~~g~eGV~i~a--~~i~~~a~~dI~L~S~~G~i~Lda~~ 267 (332)
+.+.+.+.|+|.+ ..|.++|.+.|.|+...+.|+|++++
T Consensus 92 ~~l~A~k~i~i~S~~~~I~i~A~~~I~l~~ggs~i~l~gg~ 132 (155)
T PF10106_consen 92 MELTAKKDITITSTEGKIVITAKKEITLNAGGSYIRLSGGG 132 (155)
T ss_pred hhhhccCcEEEEECCCcEEEEecCcEEEecCCcEEEEeCCc
Confidence 4445555555555 23555555555555555555555443
No 5
>KOG3950|consensus
Probab=92.56 E-value=3.9 Score=39.49 Aligned_cols=189 Identities=16% Similarity=0.213 Sum_probs=110.7
Q ss_pred CCCCcccceeecchhhHHHHHHHHHHHHHHH--HHHHHHHh-----heeeeeC-CCCceeEEEecCCeEEEeeeeeceee
Q psy6704 47 PGGSPSHTGLHDGKSFTFWALIGLLYLFALI--NLVLTLTL-----MTMLRIG-WGMETIEMLPLLNMVKLYGDIDLGKL 118 (332)
Q Consensus 47 ~~~~l~~~Gi~GwRk~cly~~vllL~il~vi--NL~LTiwI-----l~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~~l 118 (332)
....+--.|||-|=.|.|.+++++|+|+-+. =-+|-+.= |.-|++. +|+ ++ + +--+|.--..+-.+
T Consensus 23 ~~y~vGiyGWRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~Fs~dGmG~Lkit~~Gi---rl-e--G~sefl~pl~akei 96 (292)
T KOG3950|consen 23 QVYKVGIYGWRKRCLYTFVLLLMILIVVNLALTIWILKVMNFSPDGMGNLKITKKGI---RL-E--GDSEFLQPLYAKEI 96 (292)
T ss_pred eEEEEEeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccceEEccCcE---EE-e--chhhhhhhhhhhhh
Confidence 4667777999999999999999888876443 33444333 3448888 775 33 1 12222222222222
Q ss_pred eeecc---eeeecCCCCeEEEeeCCcCEE----------------EEeecCCCceeeeEEEcCCceEEEeeeeEEEeCCC
Q psy6704 119 YKDDG---YFSSFKDSGLRITGRQGGSVH----------------IDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPT 179 (332)
Q Consensus 119 ~~~~g---~I~s~~d~~L~i~S~~~~~V~----------------l~~~~~~g~~~~~L~v~~~~~~~~~~~~F~V~d~~ 179 (332)
....+ .++|+++..+...-++ +.|+ +.+++.+|. .-.+++.|.+.+.. ...+|..+
T Consensus 97 ~Sr~~~~l~~~S~rnvtvnarn~~-g~v~~~l~lgp~~ve~~~~~Fev~~~dgk--~LFsad~dEv~vga-e~LRv~g~- 171 (292)
T KOG3950|consen 97 HSRPGSPLYLQSARNVTVNARNPN-GKVTGQLILGPKKVEAQCKRFEVNDVDGK--LLFSADEDEVVVGA-EKLRVLGA- 171 (292)
T ss_pred hcCCCCceEEEeccCeeEEccCCC-CceeeeEEechHHHhhhhceeEEecCCCc--EEEEeccceeEeee-eeeEeccC-
Confidence 22111 1566666666665555 3232 334455666 57888999998888 88999886
Q ss_pred CCceeEEecCCcceEecCCcccceeeeeEEeceeecCCCCCceEeecceEEEEcCce-eEEEece-EEEEee-cceEEEe
Q psy6704 180 DHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEG-ISMEGRT-ITWTAD-KDIFLKS 256 (332)
Q Consensus 180 ~g~~lFsad~~~~ev~ip~g~~~L~~~~V~T~~Irs~~~~~L~LeS~trL~~~g~eG-V~i~a~~-i~~~a~-~dI~L~S 256 (332)
|-.+|--.-++|.|.-..+-+ |+ .| | |...|.++.|.-+.+.|.-| +...+.. +.+++. ..|+|+|
T Consensus 172 -~GavF~~sveTp~VRa~P~~~-LR---LE-----S-PTRsl~m~Apk~v~i~a~AG~iea~~~~di~~~s~dGeirLea 240 (292)
T KOG3950|consen 172 -EGAVFEHSVETPHVRADPFQE-LR---LE-----S-PTRSLSMEAPKGVEIQAAAGNIEATCLTDLRLESKDGEIRLEA 240 (292)
T ss_pred -CcccccccccCCcccCCCCcc-cc---cc-----C-CcceeeeecCCCceeeeccCCceEEEeeeeeEeccCceEEEee
Confidence 448887777666665322221 22 11 1 45566666666655554433 4444443 666554 4677776
Q ss_pred c
Q psy6704 257 V 257 (332)
Q Consensus 257 ~ 257 (332)
+
T Consensus 241 s 241 (292)
T KOG3950|consen 241 S 241 (292)
T ss_pred c
Confidence 6
No 6
>PF10106 DUF2345: Uncharacterized protein conserved in bacteria (DUF2345); InterPro: IPR018769 This entry represents the C-terminal domain of a subset of the Rhs element Vgr protein family found only in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often encoded far from the type VI secretion locus.
Probab=86.71 E-value=1.7 Score=38.54 Aligned_cols=43 Identities=28% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEcCce-eEEEec--eEEEEeecceEEEecCceEEEecCCceEE
Q psy6704 229 TRLKGNEG-ISMEGR--TITWTADKDIFLKSVNGSLTLAAENGIFL 271 (332)
Q Consensus 229 L~~~g~eG-V~i~a~--~i~~~a~~dI~L~S~~G~i~Lda~~gI~i 271 (332)
+.+-+.+| |.|+|. .+++.|.+||.|.|.++.|.|.|.+.|.|
T Consensus 74 i~liA~~G~v~iqAq~~~~~l~A~k~i~i~S~~~~I~i~A~~~I~l 119 (155)
T PF10106_consen 74 IKLIAAQGKVEIQAQSDDMELTAKKDITITSTEGKIVITAKKEITL 119 (155)
T ss_pred eeEEEcCCcEEEEEcCCchhhhccCcEEEEECCCcEEEEecCcEEE
Confidence 44444443 445443 25555555555555555555555444443
No 7
>PF12059 DUF3540: Protein of unknown function (DUF3540); InterPro: IPR021927 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 212 to 238 amino acids in length. This protein has a conserved SCL sequence motif.
Probab=79.51 E-value=19 Score=33.47 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=48.2
Q ss_pred EeCCCCC-ceeEEe-cCCcceEecCCcccceeeeeEEeceeecCCCCCceEeecceEEEEcCceeEEEec-eEEEEeecc
Q psy6704 175 VYDPTDH-LPIFST-GFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGR-TITWTADKD 251 (332)
Q Consensus 175 V~d~~~g-~~lFsa-d~~~~ev~ip~g~~~L~~~~V~T~~Irs~~~~~L~LeS~trL~~~g~eGV~i~a~-~i~~~a~~d 251 (332)
...|.-| +.|++. +.+..-|.| .+ |....-.++++.- .-||+|++..+|.+.++++++|.|. ++++.|. .
T Consensus 32 Ll~P~~GD~VLv~~~~d~~~~yIL--AV--L~r~~~~~a~L~~--~Gdl~l~~~g~l~i~~~~~l~l~s~~~l~~~a~-~ 104 (202)
T PF12059_consen 32 LLEPAVGDTVLVSGVADEERVYIL--AV--LERADPGPATLSV--PGDLTLRSSGRLSIQAAGGLRLRSPGELSLSAP-R 104 (202)
T ss_pred ccCCCCCCEEEEeecCCCCcEEEE--EE--EecCCCCcceEec--CCceEEeeccceeeccCCceEEecchheeeECc-h
Confidence 4555533 445533 332113555 44 4444444555654 3388888866688888888888887 6877776 5
Q ss_pred eEEEecCceE
Q psy6704 252 IFLKSVNGSL 261 (332)
Q Consensus 252 I~L~S~~G~i 261 (332)
+.+.|.++.+
T Consensus 105 ~~~~a~~~~~ 114 (202)
T PF12059_consen 105 LRLSAQRADC 114 (202)
T ss_pred heeeeeeeeE
Confidence 6666665544
No 8
>COG4253 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.16 E-value=4.7 Score=39.34 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=43.5
Q ss_pred eeEEEeCCCCCceeEEecCCcceEecCCcccceeeeeEEeceeecCCCCCceEeecce-EEEEcCceeEEEec-e-EEEE
Q psy6704 171 KEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETY-TRLKGNEGISMEGR-T-ITWT 247 (332)
Q Consensus 171 ~~F~V~d~~~g~~lFsad~~~~ev~ip~g~~~L~~~~V~T~~Irs~~~~~L~LeS~tr-L~~~g~eGV~i~a~-~-i~~~ 247 (332)
+.|-+.-. ++--||.-.. .+.+=.+-.++++ +.++.-|+=...+.++|+|-+. +.+.|.+.|+|.+. + |.+.
T Consensus 107 k~~~i~a~-~~isLFA~~~---GlkliA~qG~v~v-QAq~d~i~llA~k~I~~~s~~~~V~i~Ak~~i~l~agGayitl~ 181 (278)
T COG4253 107 KNFLISAG-NGISLFAQRL---GLKLIAAQGPVDV-QAQKDDIELLAKKAITLTSTQDEIDITAKKRITLNAGGAYITLD 181 (278)
T ss_pred ceeeehcc-CceeEEeecC---ceeEEecCCceEE-EecccchhhhhccceEEEecccEEEEEeeeEEEEecCccEEEEc
Confidence 66755554 5666666333 2322111111211 4455556656666666666544 66666666666632 2 4443
Q ss_pred eecceEEEecCceEEEecC
Q psy6704 248 ADKDIFLKSVNGSLTLAAE 266 (332)
Q Consensus 248 a~~dI~L~S~~G~i~Lda~ 266 (332)
.. .|.+... |.+..-+.
T Consensus 182 ~g-~Ie~g~~-G~~~~KaA 198 (278)
T COG4253 182 GG-NIEVGTP-GEFTVKAA 198 (278)
T ss_pred CC-eEEecCC-cceEEecC
Confidence 32 4444433 44444443
No 9
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=64.79 E-value=17 Score=29.24 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=40.6
Q ss_pred CCCceEeecceEEEEcCceeEEEece-EEEEeecceEEEecCceEEEecCCceEEecCCc
Q psy6704 218 EDDLTLRSETYTRLKGNEGISMEGRT-ITWTADKDIFLKSVNGSLTLAAENGIFLEVKKL 276 (332)
Q Consensus 218 ~~~L~LeS~trL~~~g~eGV~i~a~~-i~~~a~~dI~L~S~~G~i~Lda~~gI~i~~~~L 276 (332)
-+|+.+.-|. ++|.|.+-+.|++-. |.-=....|.|++..|.+.+.|++ +.+..+
T Consensus 12 P~Dv~~~~p~-itl~gr~~~~Ien~k~I~~y~~~~I~l~t~~G~l~I~G~~---L~I~~l 67 (85)
T TIGR02856 12 PGDIILDLPR-ITLIGNEHIYIENHRGLVVFSPEEVKLNSTNGKITIEGKN---FVIKFI 67 (85)
T ss_pred ChHHhcCCCE-EEEECCcEEEEECccceEEECCCEEEEEcCceEEEEEccc---EEEeee
Confidence 3445554444 889999999999864 444445689999999999999998 544554
No 10
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=56.10 E-value=17 Score=27.57 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=26.7
Q ss_pred EEEEcCceeEEEece-EEEEeecceEEEecCceEEEecCC
Q psy6704 229 TRLKGNEGISMEGRT-ITWTADKDIFLKSVNGSLTLAAEN 267 (332)
Q Consensus 229 L~~~g~eGV~i~a~~-i~~~a~~dI~L~S~~G~i~Lda~~ 267 (332)
++|.|++-+.|++-. |.-=....|.|++.+|.+.+.|++
T Consensus 4 i~l~g~~~l~Ien~k~I~~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 4 ITLVGRKELYIENHKGILSFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp ----S-EEEEECSEEEEEEEETTEEEEEETTEEEEEEEEE
T ss_pred EEEECCCEEEEECcccEEEECCCEEEEEeCCEEEEEECce
Confidence 677788888887754 444445589999999999999997
No 11
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=48.65 E-value=9.8 Score=23.89 Aligned_cols=22 Identities=32% Similarity=0.967 Sum_probs=13.5
Q ss_pred EeEecCCCeEEEEecCCCCccceeeccCC
Q psy6704 296 LCVCMPGGRIFRVKADDIMSHNACHNINT 324 (332)
Q Consensus 296 lCvC~p~GkLFlv~~~~~~~~~tC~~~~~ 324 (332)
-|.| |.| |...+. + -+|.+++|
T Consensus 3 ~C~C-~~G--y~l~~d-~---~~C~DIdE 24 (24)
T PF12662_consen 3 TCSC-PPG--YQLSPD-G---RSCEDIDE 24 (24)
T ss_pred EeeC-CCC--CcCCCC-C---CccccCCC
Confidence 4999 688 333333 3 38987753
No 12
>COG2911 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.96 E-value=1.9e+02 Score=34.17 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=27.7
Q ss_pred EEEEcCceeEEEeceEEEEeecceEEEecCceEEEecC
Q psy6704 229 TRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAE 266 (332)
Q Consensus 229 L~~~g~eGV~i~a~~i~~~a~~dI~L~S~~G~i~Lda~ 266 (332)
|.++++.+|++.|.-++.+=..|+++.-..+.+.+.+.
T Consensus 1052 l~V~~g~~i~~~g~Gld~~L~G~L~v~q~~~~l~~~G~ 1089 (1278)
T COG2911 1052 LDVNAGDDIFVRGFGLDAELGGDLHVRQPKGNLGLNGQ 1089 (1278)
T ss_pred EEEEcCCeEEEEecccccccCceEEecccCCCccccce
Confidence 66777889999998877776777777755566666654
No 13
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=44.92 E-value=35 Score=24.93 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=25.9
Q ss_pred ecchhhHHHHHHH--HHHHHHHHHHHHHHHhheee
Q psy6704 57 HDGKSFTFWALIG--LLYLFALINLVLTLTLMTML 89 (332)
Q Consensus 57 ~GwRk~cly~~vl--lL~il~viNL~LTiwIl~VL 89 (332)
..||.++|.++++ +|.+..|.-....+|++-.+
T Consensus 8 ~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~~ 42 (47)
T TIGR02972 8 NELKALGFIIVVLFPILSVAGIGGYGFIIWMIQAF 42 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777776 47788888999999998765
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.74 E-value=19 Score=30.69 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q psy6704 62 FTFWALIGLLY 72 (332)
Q Consensus 62 ~cly~~vllL~ 72 (332)
|.||+++++++
T Consensus 2 W~l~~iii~~i 12 (130)
T PF12273_consen 2 WVLFAIIIVAI 12 (130)
T ss_pred eeeHHHHHHHH
Confidence 44444433333
No 15
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=40.85 E-value=47 Score=25.09 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=27.0
Q ss_pred ceeecchhhHHHHHHH--HHHHHHHHHHHHHHHhhee
Q psy6704 54 TGLHDGKSFTFWALIG--LLYLFALINLVLTLTLMTM 88 (332)
Q Consensus 54 ~Gi~GwRk~cly~~vl--lL~il~viNL~LTiwIl~V 88 (332)
..-..||.++|.++++ +|.+..|.-..+.+|++-.
T Consensus 13 ~k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 13 TKRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888777776 5778888999999999865
No 16
>COG4093 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.33 E-value=1.5e+02 Score=29.79 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=70.9
Q ss_pred ceeecchhhHHHHHHHHHHHHHHHHHHHHHHhhee-------------ee---eCCCCceeEEE--e------cCCeEEE
Q psy6704 54 TGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTM-------------LR---IGWGMETIEML--P------LLNMVKL 109 (332)
Q Consensus 54 ~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl~V-------------L~---~~~GMg~L~~~--~------~~~~vr~ 109 (332)
.+-.+.||+.||+++.+-+++++= =-=|++-. ++ ++-+|++|+|- | - +-|++
T Consensus 7 a~~~~~rkr~~wl~i~ivv~~g~y---SaGWFylA~rle~~~~a~~a~l~a~Gv~~~c~~l~~~GyPfRi~v~c-d~v~~ 82 (338)
T COG4093 7 APQSATRKRLFWLVIAIVVLIGAY---SAGWFYLADRLEQQADAQAADLQARGVSGECANLTFSGYPFRINVFC-DKVRV 82 (338)
T ss_pred CCCCccccchhHHHHHHHHHHHHh---cchHhhHHhHHHHHHHHhhhhhhcccccceeeceEecccceEEEEEe-cceEe
Confidence 455778999999988766654432 23455532 22 33567888871 1 0 11222
Q ss_pred eeee-----ece------eeeeecceeeecCCCCeEEEeeCCcCEEEEeecCCCceeeeEEEcCCceEEEeeee-EEEe-
Q psy6704 110 YGDI-----DLG------KLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKE-FNVY- 176 (332)
Q Consensus 110 ~G~~-----~f~------~l~~~~g~I~s~~d~~L~i~S~~~~~V~l~~~~~~g~~~~~L~v~~~~~~~~~~~~-F~V~- 176 (332)
.-.+ -|. .||.- +..----+.|.+|+.....+++++=-+-+... .-..=++++++++..+- ++-+
T Consensus 83 ~d~~~G~aas~g~l~s~AqvY~p-~~~V~~L~gpa~i~~p~~~~lsi~w~~l~asi-~~~~~~p~Risl~~~~Lt~~~~s 160 (338)
T COG4093 83 DDPTEGWAASAGQLRSAAQVYNP-GHWVLELDGPAEIRVPGGVPLSIAWDNLRASI-SLVLPGPDRISLAADGLTGQARS 160 (338)
T ss_pred cCCccchhhcccccccccccccC-CceEEecCCceEEecCCCceeEeehhhhhhee-eecccCCCceeEEeccccccccC
Confidence 1100 111 12221 11222346688888877334443322222111 11122455555554221 3333
Q ss_pred CCCCCceeEEecCCcceEecCCccccee
Q psy6704 177 DPTDHLPIFSTGFRSADFGLPRGVKKLD 204 (332)
Q Consensus 177 d~~~g~~lFsad~~~~ev~ip~g~~~L~ 204 (332)
++..--++|++++ -|.++..+--.|+
T Consensus 161 ~~T~~~~lfsA~~--~~lhlr~nG~dld 186 (338)
T COG4093 161 ANTKPFTLFSADR--MELHLRGNGGDLD 186 (338)
T ss_pred CCCCccccccccc--eeEEEcCCCCCcc
Confidence 3434468999999 5999975554444
No 17
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=39.02 E-value=32 Score=25.73 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy6704 62 FTFWALIGLLYLFALINLVL 81 (332)
Q Consensus 62 ~cly~~vllL~il~viNL~L 81 (332)
+-.|+++++.+-++|.||++
T Consensus 3 ~~~wlIIviVlgvIigNia~ 22 (55)
T PF11446_consen 3 WNPWLIIVIVLGVIIGNIAA 22 (55)
T ss_pred chhhHHHHHHHHHHHhHHHH
Confidence 34678888888889999987
No 18
>KOG3591|consensus
Probab=38.93 E-value=1.6e+02 Score=26.78 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=50.5
Q ss_pred cCEEEEeec-CCCceeeeEEEcCCceEEEeeeeEEEeCCCCCceeEEecCCcceEecCCcccceeeeeEEeceeecCCCC
Q psy6704 141 GSVHIDVNF-GVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIED 219 (332)
Q Consensus 141 ~~V~l~~~~-~~g~~~~~L~v~~~~~~~~~~~~F~V~d~~~g~~lFsad~~~~ev~ip~g~~~L~~~~V~T~~Irs~~~~ 219 (332)
..|.|++.. .-.. =++.+..+.+++++ ++.+..|. .| .+-.. + +..|.||+|++--.+.+
T Consensus 74 F~V~lDV~~F~PeE--l~Vk~~~~~l~V~g-kHeer~d~-~G-~v~R~-F-~R~y~LP~~vdp~~V~S------------ 134 (173)
T KOG3591|consen 74 FEVNLDVHQFKPEE--LKVKTDDNTLEVEG-KHEEKEDE-HG-YVSRS-F-VRKYLLPEDVDPTSVTS------------ 134 (173)
T ss_pred EEEEEEcccCcccc--eEEEeCCCEEEEEe-eeccccCC-CC-eEEEE-E-EEEecCCCCCChhheEE------------
Confidence 346666554 2233 35666666778888 88777664 33 22211 1 24799999997433322
Q ss_pred CceEeecceEEEEcCceeEEE--eceEEEE
Q psy6704 220 DLTLRSETYTRLKGNEGISME--GRTITWT 247 (332)
Q Consensus 220 ~L~LeS~trL~~~g~eGV~i~--a~~i~~~ 247 (332)
.|.+++.|+++||.--... .+.|.+.
T Consensus 135 --~LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 135 --TLSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred --eeCCCceEEEEccCCCCcCccceEEeEe
Confidence 3457788888888766554 4445443
No 19
>PF08622 Svf1: Svf1-like; InterPro: IPR013931 This entry represents oxidative stress survival proteins, such as Svf1. The protein Svf1 is required for yeast survival under conditions of oxidative stress, including cold stress []. Cells deficient in Svf1 have increased levels of reactive oxygen species (ROS) under certain conditions. ; GO: 0006979 response to oxidative stress
Probab=37.74 E-value=4.4e+02 Score=26.54 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCceeEEEecCCeEEEeeeeece-eeeeecce----------eee-cCCCCeEEEeeCCcCEEEEeecCCC-ceeeeEEE
Q psy6704 94 GMETIEMLPLLNMVKLYGDIDLG-KLYKDDGY----------FSS-FKDSGLRITGRQGGSVHIDVNFGVN-RTRRMLSI 160 (332)
Q Consensus 94 GMg~L~~~~~~~~vr~~G~~~f~-~l~~~~g~----------I~s-~~d~~L~i~S~~~~~V~l~~~~~~g-~~~~~L~v 160 (332)
-++..||+.. +.+-++-.++|. ++|-.++. +.- |+...+.+.+++ +.+.. +..| .-+=+..+
T Consensus 17 ~~gf~QvIyS-nv~Gl~~t~Qfnfkif~~~~~~~~~lW~S~~l~n~f~~d~~sf~ad~---~s~~l-~~d~~~y~Iks~~ 91 (325)
T PF08622_consen 17 YFGFVQVIYS-NVMGLYTTAQFNFKIFNPKTPEKPHLWTSTKLSNFFSFDKLSFYADN---FSIEL-NEDGTTYTIKSDV 91 (325)
T ss_pred EEEEEEEEee-cccceeeeEEEEEEEECCCCCCCCCeEEeeecccccccCCCcEEEcc---EEEEe-CCCCCEEEEEEec
Confidence 4788888873 444566668886 77754433 333 666777887777 66554 3333 22333344
Q ss_pred cCCce---EEE-eeeeEEEeCCCCCceeEEecCCc
Q psy6704 161 EPEGV---RVT-NVKEFNVYDPTDHLPIFSTGFRS 191 (332)
Q Consensus 161 ~~~~~---~~~-~~~~F~V~d~~~g~~lFsad~~~ 191 (332)
+++.. ++. ...+|.+.+ +|.++|.+|.++
T Consensus 92 ~~~~~vdl~~~r~~pGfk~g~--dG~syyg~d~~~ 124 (325)
T PF08622_consen 92 NEDSIVDLTFTRLAPGFKVGK--DGTSYYGTDPEN 124 (325)
T ss_pred CCCcEEEEEEEeccCCeEECC--CCccccCCCCCC
Confidence 55533 232 346788884 799999988753
No 20
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=37.59 E-value=28 Score=22.05 Aligned_cols=13 Identities=15% Similarity=0.444 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHH
Q psy6704 61 SFTFWALIGLLYL 73 (332)
Q Consensus 61 k~cly~~vllL~i 73 (332)
.++|..++++|+|
T Consensus 5 ~FalivVLFILLi 17 (24)
T PF09680_consen 5 GFALIVVLFILLI 17 (24)
T ss_pred cchhHHHHHHHHH
Confidence 3444444444433
No 21
>KOG3825|consensus
Probab=35.60 E-value=48 Score=32.97 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=30.6
Q ss_pred ceEEEecCCceEE--ecCCcccccccccccCCCCCcceEEeEec
Q psy6704 259 GSLTLAAENGIFL--EVKKLPFVKKNLFLDSNLHNAAFKLCVCM 300 (332)
Q Consensus 259 G~i~Lda~~gI~i--~~~~LP~~~~~~~~~s~~~~~~yklCvC~ 300 (332)
|.+.+|..+|+++ .+++.|-.+.-..-.++...+|-.+|+|+
T Consensus 117 Gv~~~d~~tgfWliHSVP~FP~~~~y~yP~s~~~ygQs~lCis~ 160 (316)
T KOG3825|consen 117 GVLLFDGTTGFWLIHSVPKFPSIDMYSYPSSAHYYGQSGLCISF 160 (316)
T ss_pred ceEEEecCccEEEEEecCCCCCccccCCCCChhhcccceEEEEE
Confidence 8889999999998 48888844432333344445889999997
No 22
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=35.49 E-value=35 Score=21.99 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy6704 67 LIGLLYLFAL 76 (332)
Q Consensus 67 ~vllL~il~v 76 (332)
++++|||+.|
T Consensus 10 livVLFILLI 19 (26)
T TIGR01732 10 LIVVLFILLV 19 (26)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 23
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.23 E-value=25 Score=29.85 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy6704 65 WALIGLLYLFALINLVLTLTLM 86 (332)
Q Consensus 65 y~~vllL~il~viNL~LTiwIl 86 (332)
|+|++++++++++=|++++|+-
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665556655553
No 24
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=35.12 E-value=1.7e+02 Score=21.09 Aligned_cols=12 Identities=8% Similarity=0.459 Sum_probs=5.3
Q ss_pred ceEEEecCceEE
Q psy6704 251 DIFLKSVNGSLT 262 (332)
Q Consensus 251 dI~L~S~~G~i~ 262 (332)
++.+++..|.|.
T Consensus 63 ~~~i~t~~G~i~ 74 (76)
T PF13345_consen 63 NVDISTSSGDIS 74 (76)
T ss_pred EEEEEecceeEE
Confidence 444444444443
No 25
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=32.67 E-value=83 Score=22.48 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=24.8
Q ss_pred cchhhHHHHHHH--HHHHHHHHHHHHHHHhheee
Q psy6704 58 DGKSFTFWALIG--LLYLFALINLVLTLTLMTML 89 (332)
Q Consensus 58 GwRk~cly~~vl--lL~il~viNL~LTiwIl~VL 89 (332)
.||.++|.++++ +|.+..|.-....+|++-.+
T Consensus 4 El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~~ 37 (42)
T TIGR02973 4 ELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQIL 37 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777766 47788888999999998654
No 26
>KOG4684|consensus
Probab=32.63 E-value=41 Score=32.11 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=30.1
Q ss_pred CCCcccceeecchhhHHHHHHHHHHHHHHHHHHHHHHhheeee
Q psy6704 48 GGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLR 90 (332)
Q Consensus 48 ~~~l~~~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl~VL~ 90 (332)
-..+..+|-|--|+||+.+|||-|.+ +|.-.+||+--++|-+
T Consensus 195 CrKvSsvGsrfar~Ra~~ffilal~~-avta~~lt~gT~s~a~ 236 (275)
T KOG4684|consen 195 CRKVSSVGSRFARRRALLFFILALTV-AVTAVILTMGTASVAP 236 (275)
T ss_pred ccchhhhhhHHhhhhhHHHHHHHHHH-HHHHHHHHhhhhhhcc
Confidence 55566788888899999998887765 6666677665555543
No 27
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.32 E-value=43 Score=33.07 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhe
Q psy6704 67 LIGLLYLFALINLVLTLTLMT 87 (332)
Q Consensus 67 ~vllL~il~viNL~LTiwIl~ 87 (332)
-.++|+||+|+=.+|-||+.+
T Consensus 264 aalvllil~vvliiLYiWlyr 284 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWLYR 284 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999875
No 28
>COG1934 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.14 E-value=4e+02 Score=24.35 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=22.8
Q ss_pred eeecCCCCeEEEeeCCcCEEEEeecCCCceeeeEEEcCCceEEEe
Q psy6704 125 FSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTN 169 (332)
Q Consensus 125 I~s~~d~~L~i~S~~~~~V~l~~~~~~g~~~~~L~v~~~~~~~~~ 169 (332)
+.+..++|+.|+||. -.++--+..-..++.+.+......+++
T Consensus 25 l~~d~~qPi~i~ad~---~el~~~~~~a~ftGNV~i~qG~~~l~A 66 (173)
T COG1934 25 LKGDRDQPITIEADQ---QELDDKNGVATFTGNVVVTQGTITLRA 66 (173)
T ss_pred ccccccCCEEEEccc---eeeeccCCEEEEEccEEEEecccEEEe
Confidence 455668999999888 333211222233444455554555555
No 29
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=31.79 E-value=51 Score=31.54 Aligned_cols=28 Identities=18% Similarity=0.010 Sum_probs=13.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhe
Q psy6704 59 GKSFTFWALIGLLYLFALINLVLTLTLMT 87 (332)
Q Consensus 59 wRk~cly~~vllL~il~viNL~LTiwIl~ 87 (332)
||++.++++.+++++++ +=+++..||..
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 29 (239)
T PRK10834 2 LKRLIYSLLVLIGLLLL-TVLGLDRWMSW 29 (239)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHhHhhee
Confidence 55544444433333222 23677888843
No 30
>PTZ00370 STEVOR; Provisional
Probab=31.52 E-value=45 Score=32.96 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhe
Q psy6704 67 LIGLLYLFALINLVLTLTLMT 87 (332)
Q Consensus 67 ~vllL~il~viNL~LTiwIl~ 87 (332)
..++|+||+|+=.+|-||+.+
T Consensus 260 aalvllil~vvliilYiwlyr 280 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYR 280 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999875
No 31
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.48 E-value=18 Score=35.95 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhheeeeeC
Q psy6704 75 ALINLVLTLTLMTMLRIG 92 (332)
Q Consensus 75 ~viNL~LTiwIl~VL~~~ 92 (332)
..+-|||++|+. ||+=
T Consensus 114 l~~lLaL~vW~Y--m~lL 129 (381)
T PF05297_consen 114 LCCLLALGVWFY--MWLL 129 (381)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHH--HHHH
Confidence 345678999998 6544
No 32
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=29.33 E-value=63 Score=31.54 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy6704 59 GKSFTFWALIGLLYLFALINLVLTLTL 85 (332)
Q Consensus 59 wRk~cly~~vllL~il~viNL~LTiwI 85 (332)
|-.|++|+++++.++++.+-.+..+|.
T Consensus 20 ~~~R~~W~~~~~~~~~~~~~~~~~~~~ 46 (439)
T PF00858_consen 20 WFERLFWLLVVVVSFILFIYQIYLLIE 46 (439)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999888888877764
No 33
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=29.23 E-value=57 Score=31.66 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=17.2
Q ss_pred CCCccccee-ecchhhHHHHHHHHHHHHHHHHH
Q psy6704 48 GGSPSHTGL-HDGKSFTFWALIGLLYLFALINL 79 (332)
Q Consensus 48 ~~~l~~~Gi-~GwRk~cly~~vllL~il~viNL 79 (332)
-..+..+|- |.||+.++|+++.+||+++-+=|
T Consensus 183 CrKvSSVG~~faRkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 183 CRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred CceeccccchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 556677887 55555544444444444443333
No 34
>PF14102 Caps_synth_CapC: Capsule biosynthesis CapC
Probab=28.36 E-value=47 Score=28.38 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.0
Q ss_pred ceeecchhhHHHHHHHHHHH
Q psy6704 54 TGLHDGKSFTFWALIGLLYL 73 (332)
Q Consensus 54 ~Gi~GwRk~cly~~vllL~i 73 (332)
+++|||||+.+.+++-+++=
T Consensus 58 ~ilyGRrrf~~~il~g~~l~ 77 (121)
T PF14102_consen 58 TILYGRRRFAAAILLGFLLK 77 (121)
T ss_pred hhcccHHHHHHHHHHHHHHH
Confidence 67999999998877776644
No 35
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=28.19 E-value=50 Score=29.92 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6704 60 KSFTFWALIGLLYLFALINLVLTLTLM 86 (332)
Q Consensus 60 Rk~cly~~vllL~il~viNL~LTiwIl 86 (332)
++||+=+|+=+.++++|+-|+.-..++
T Consensus 28 ~~R~i~l~~Ri~~~iSIisL~~l~v~L 54 (161)
T PHA02673 28 IRRYIKLFFRLMAAIAIIVLAILVVIL 54 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888887644333
No 36
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=27.80 E-value=1.5e+02 Score=26.71 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.8
Q ss_pred eeeEEEeCCCCCceeEEecCC
Q psy6704 170 VKEFNVYDPTDHLPIFSTGFR 190 (332)
Q Consensus 170 ~~~F~V~d~~~g~~lFsad~~ 190 (332)
..+|.++|.++|+.||-...+
T Consensus 11 f~~f~iRD~dtg~vlfe~~~~ 31 (157)
T PF05351_consen 11 FTRFKIRDADTGKVLFEINKD 31 (157)
T ss_dssp EEEEEEEETTTTEEEEEEESS
T ss_pred EEEEEEEECCCCcEEEEecCC
Confidence 478999999999999998875
No 37
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=26.55 E-value=73 Score=27.90 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhheeee
Q psy6704 59 GKSFTFWALIGLLYLFALINLVLTLTLMTMLR 90 (332)
Q Consensus 59 wRk~cly~~vllL~il~viNL~LTiwIl~VL~ 90 (332)
||++.+|.. -+++-++++|.+++.||.+.+.
T Consensus 14 ~~~~~~~~~-~~~~~~~~~~a~~s~~~~~~~~ 44 (128)
T PRK13717 14 RRSHWWWTV-PGCLAMVLLNAAVSYGIVRLNA 44 (128)
T ss_pred chhcchHHH-HHHHHHHHHHHHHHHHHhhcCC
Confidence 344445544 4444558899999999998764
No 38
>COG4253 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.11 E-value=1.4e+02 Score=29.32 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=25.9
Q ss_pred CCCCceEeecce-EEEEcCce-eEEEece--EEEEeecceEEEecCceEEEecCCceEE
Q psy6704 217 IEDDLTLRSETY-TRLKGNEG-ISMEGRT--ITWTADKDIFLKSVNGSLTLAAENGIFL 271 (332)
Q Consensus 217 ~~~~L~LeS~tr-L~~~g~eG-V~i~a~~--i~~~a~~dI~L~S~~G~i~Lda~~gI~i 271 (332)
+.+.|.|=.... |.+-+++| |.|+|.+ |.+.|.++|.+.|++++|.+.|...|.|
T Consensus 113 a~~~isLFA~~~GlkliA~qG~v~vQAq~d~i~llA~k~I~~~s~~~~V~i~Ak~~i~l 171 (278)
T COG4253 113 AGNGISLFAQRLGLKLIAAQGPVDVQAQKDDIELLAKKAITLTSTQDEIDITAKKRITL 171 (278)
T ss_pred ccCceeEEeecCceeEEecCCceEEEecccchhhhhccceEEEecccEEEEEeeeEEEE
Confidence 344444444343 44444444 4444432 4555555555555555555555444443
No 39
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=25.31 E-value=1.8e+02 Score=29.88 Aligned_cols=55 Identities=7% Similarity=0.078 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhheeeeeCCCCceeEEEecCCeEEEeeeeece
Q psy6704 58 DGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLG 116 (332)
Q Consensus 58 GwRk~cly~~vllL~il~viNL~LTiwIl~VL~~~~GMg~L~~~~~~~~vr~~G~~~f~ 116 (332)
+|-.+..+|+++.+++|++|-.++...+- .. +=+..++|+.-++.|-=+.|.-||
T Consensus 297 ~~~~r~~~c~~~~i~~lL~ig~~~gFv~A-tt---KpL~~v~v~~I~NVlaS~qELmfd 351 (387)
T PF12751_consen 297 SWFSRFASCIYLSILLLLVIGFAIGFVFA-TT---KPLTDVQVVSIQNVLASEQELMFD 351 (387)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHhhhh-cC---cccccceEEEeeeeeeccceEEEe
Confidence 33333333333333344455555543332 22 344455554322344434555565
No 40
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=24.53 E-value=1.7e+02 Score=23.65 Aligned_cols=47 Identities=23% Similarity=0.505 Sum_probs=29.5
Q ss_pred ceEeecceEEEEcCceeEEEeceEEEEeecceEEEecCceEEEecCCceEEecCCcc
Q psy6704 221 LTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLP 277 (332)
Q Consensus 221 L~LeS~trL~~~g~eGV~i~a~~i~~~a~~dI~L~S~~G~i~Lda~~gI~i~~~~LP 277 (332)
|.|+...++.+.|-+||. .|. ...|.|++..|.+.+.+.+ +.+++|-
T Consensus 3 l~l~nR~~l~itGV~~V~------sfd-~~~I~l~T~~G~L~I~G~~---L~I~~l~ 49 (85)
T TIGR02892 3 VSIENRKRLSITGVKEVI------SFD-DEEILLETVMGFLTIKGQE---LKMNKLD 49 (85)
T ss_pred eEEccccEEEEeccceEE------EEC-CCEEEEEeCcEEEEEEcce---eEeeEEe
Confidence 455555557777766653 222 2367888888888888887 5555553
No 41
>PF01445 SH: Viral small hydrophobic protein; InterPro: IPR001477 The mumps virus SH protein is a membrane protein and not essential for virus growth []. Its function is unknown.; GO: 0016020 membrane
Probab=24.30 E-value=1.1e+02 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhee
Q psy6704 68 IGLLYLFALINLVLTLTLMTM 88 (332)
Q Consensus 68 vllL~il~viNL~LTiwIl~V 88 (332)
.+||+++....+.|-+||+..
T Consensus 11 tfLlLill~liiTLyVwi~lt 31 (57)
T PF01445_consen 11 TFLLLILLYLIITLYVWIILT 31 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445455555666777643
No 42
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=23.43 E-value=1.1e+02 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=19.8
Q ss_pred CCcccceeecchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6704 49 GSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLM 86 (332)
Q Consensus 49 ~~l~~~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl 86 (332)
.++|-.|..|| +++..++.+.+++-++++++.++++
T Consensus 68 RRlhD~G~sg~--~~~~~~~~~~~~ip~i~~i~~l~l~ 103 (120)
T PF05656_consen 68 RRLHDIGRSGW--WILLPFVLLALLIPIIGIIVLLYLL 103 (120)
T ss_pred hhhhcCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888 3332222333333466666655554
No 43
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=23.34 E-value=96 Score=28.51 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeeeeCCCCceeEEEe
Q psy6704 63 TFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLP 102 (332)
Q Consensus 63 cly~~vllL~il~viNL~LTiwIl~VL~~~~GMg~L~~~~ 102 (332)
||..++.||+++++.|.+|++.+++..+ -....++|
T Consensus 16 ~~~~l~~l~~~~~~~~v~l~~~~~~~~~----~q~~vlvP 51 (188)
T PRK13726 16 AFIFLSVLIVLSLSVNVIQGVNNYRLQN----EQRTAVTP 51 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcEEEEEC
Confidence 4666778888888889888888775554 45555555
No 44
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=23.07 E-value=8.4e+02 Score=25.14 Aligned_cols=120 Identities=21% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCCeEEEeeCCcCEEEEeecCCCceeeeEEEcCCceEEEeeeeEEEeCCCCCceeEEecCCcceEecCCcccceeeeeEE
Q psy6704 130 DSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVR 209 (332)
Q Consensus 130 d~~L~i~S~~~~~V~l~~~~~~g~~~~~L~v~~~~~~~~~~~~F~V~d~~~g~~lFsad~~~~ev~ip~g~~~L~~~~V~ 209 (332)
|.+|++++.. +.+. +..|+. +-+.+..-.+. ++..+|++. |+.|=.-|. .+.+-+++ .
T Consensus 50 nr~l~l~ge~-ga~l----~g~g~G-~~vtv~aP~~~---v~Gl~vr~s--g~~lp~m~a---gI~v~~~a--------t 107 (408)
T COG3420 50 NRALTLRGEN-GAVL----DGGGKG-SYVTVAAPDVI---VEGLTVRGS--GRSLPAMDA---GIFVGRTA--------T 107 (408)
T ss_pred ccceeecccc-ccEE----ecCCcc-cEEEEeCCCce---eeeEEEecC--CCCcccccc---eEEeccCc--------c
Confidence 4567777777 3342 555443 55666665665 477889985 555544444 33332222 1
Q ss_pred eceeecCCCCCceEeecceEEEEcCceeEEEeceEEEEee-------cceEEEecCceEEEec-----CCceEEecCC
Q psy6704 210 TSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTAD-------KDIFLKSVNGSLTLAA-----ENGIFLEVKK 275 (332)
Q Consensus 210 T~~Irs~~~~~L~LeS~trL~~~g~eGV~i~a~~i~~~a~-------~dI~L~S~~G~i~Lda-----~~gI~i~~~~ 275 (332)
-.+|| ..+|+=.+-+ +-++|..++.+++.+|+=.++ ..|.+--+.|..++.. .+|||.+..+
T Consensus 108 ~A~Vr---~N~l~~n~~G-i~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~ 181 (408)
T COG3420 108 GAVVR---HNDLIGNSFG-IYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQ 181 (408)
T ss_pred cceEE---cccccccceE-EEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccc
Confidence 11223 3344434444 888888888888877654333 3577776667777654 5677776443
No 45
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=1.1e+02 Score=34.82 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=27.0
Q ss_pred CcceEEeEecCCCeEEEEecCCCCccceee-ccCCCCCCCC
Q psy6704 291 NAAFKLCVCMPGGRIFRVKADDIMSHNACH-NINTSPEHHP 330 (332)
Q Consensus 291 ~~~yklCvC~p~GkLFlv~~~~~~~~~tC~-~~~~~~~~~p 330 (332)
..+|+.|.| |||-.-+........+++|+ .++....+||
T Consensus 21 ~r~y~~I~L-pNGl~~LlisDP~a~ks~aAL~V~vGs~~DP 60 (937)
T COG1025 21 DRKYRAIKL-PNGLRALLVSDPQADKSSAALVVPVGSFDDP 60 (937)
T ss_pred CcceeEEEC-CCCceEEEecCCCCCccceeEEeecCCCCCh
Confidence 468999999 89976665555444367777 5556666666
No 46
>COG3595 Uncharacterized conserved protein [Function unknown]
Probab=21.97 E-value=8.1e+02 Score=24.50 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=14.8
Q ss_pred eeecCCCCeEEEeeCCcCEEE
Q psy6704 125 FSSFKDSGLRITGRQGGSVHI 145 (332)
Q Consensus 125 I~s~~d~~L~i~S~~~~~V~l 145 (332)
|.-..+..+.+++.. +++.+
T Consensus 119 i~~~~~~~~eies~s-g~~~i 138 (318)
T COG3595 119 IVPWSLSDVEIESVS-GVIRI 138 (318)
T ss_pred eccccccceEEEEec-CcEEc
Confidence 667788888888888 55543
No 47
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=21.49 E-value=54 Score=24.59 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=22.0
Q ss_pred cccccccccccccccCCCCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy6704 31 RLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVL 81 (332)
Q Consensus 31 ~~~h~~nf~ag~v~~~~~~~l~~~Gi~GwRk~cly~~vllL~il~viNL~L 81 (332)
+|+|.+.|+.+- |. +.--+|+ ...+++++.++.++|+++
T Consensus 18 ~~~~e~Df~~~~-p~----~~Ii~gi-------i~~~~fV~~Lv~lV~~vv 56 (56)
T PF11174_consen 18 SKNRERDFAQGS-PV----HFIIVGI-------ILAALFVAGLVLLVNLVV 56 (56)
T ss_pred chhHHHHHHcCC-Cc----hHHHHHH-------HHHHHHHHHHHHHHHHhC
Confidence 466777776554 22 2223444 455566666667777653
No 48
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=21.16 E-value=1.1e+02 Score=23.42 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=11.7
Q ss_pred eecchhhHHHHHHHHHHH
Q psy6704 56 LHDGKSFTFWALIGLLYL 73 (332)
Q Consensus 56 i~GwRk~cly~~vllL~i 73 (332)
+|-||++|..++.++.+.
T Consensus 25 ~r~RrRrc~~~v~~v~~~ 42 (60)
T PF06072_consen 25 SRRRRRRCRLAVAIVFAV 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455888898665555444
No 49
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.09 E-value=1.4e+02 Score=24.53 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=30.5
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHhheeeeeC-CCCceeEEEe
Q psy6704 57 HDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIG-WGMETIEMLP 102 (332)
Q Consensus 57 ~GwRk~cly~~vllL~il~viNL~LTiwIl~VL~~~-~GMg~L~~~~ 102 (332)
||+..-=+|==+.+|+..+|.+++++++.+..++.. .+-+.+.|.+
T Consensus 41 y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f~r 87 (103)
T PF06422_consen 41 YGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVFKR 87 (103)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEeC
Confidence 333333334345556666778999999999999988 6666666654
No 50
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=20.58 E-value=6.5e+02 Score=23.65 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=9.8
Q ss_pred eEEEcCCceEEEeeeeEEEeCC
Q psy6704 157 MLSIEPEGVRVTNVKEFNVYDP 178 (332)
Q Consensus 157 ~L~v~~~~~~~~~~~~F~V~d~ 178 (332)
+|.+.++++-.-.|+.|+|+.+
T Consensus 110 ~i~Lteg~~Ie~~ck~~~v~a~ 131 (203)
T COG4384 110 KIVLTEGGIIEADCKTLTVNAA 131 (203)
T ss_pred EEEEccCcEEEEeccEEEEecC
Confidence 4444444443333344544443
No 51
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.56 E-value=71 Score=35.60 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=8.4
Q ss_pred EEEEcCceeEEEe
Q psy6704 229 TRLKGNEGISMEG 241 (332)
Q Consensus 229 L~~~g~eGV~i~a 241 (332)
-+-+|.-||.|.+
T Consensus 495 ~~Y~G~GGv~l~s 507 (774)
T PF03699_consen 495 TTYDGKGGVPLGS 507 (774)
T ss_pred EEEeCCCCCccCC
Confidence 4566777777744
No 52
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=20.35 E-value=4.7e+02 Score=22.83 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHhheeeeeC-CCCce
Q psy6704 76 LINLVLTLTLMTMLRIG-WGMET 97 (332)
Q Consensus 76 viNL~LTiwIl~VL~~~-~GMg~ 97 (332)
++-+++..+++...++. +-|..
T Consensus 10 ~~~~~i~~~~~~~~~v~g~SM~P 32 (163)
T TIGR02227 10 LLALLIRTFVFFPYKIPGGSMEP 32 (163)
T ss_pred HHHHHHHhhEEEEEEECCccccc
Confidence 44466778888999988 78865
No 53
>PRK14772 lipoprotein signal peptidase; Provisional
Probab=20.15 E-value=3.2e+02 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=36.2
Q ss_pred ccceeecchhhHHHHHHHHHHHHHHHHHHHHHHhheeeeeCCCCceeEEEe
Q psy6704 52 SHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLP 102 (332)
Q Consensus 52 ~~~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl~VL~~~~GMg~L~~~~ 102 (332)
.+.+-+.||++.+..++.+.+++.++-.+.=.|+...|..+ +...+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~i~~~~~~lDQ~tK~~v~~~l~~g---~~i~vi~ 60 (190)
T PRK14772 13 TPPTRRPRRWRLLILFAGFAVFAYVFDQLTKLWVTSTMVEG---ERIPVLP 60 (190)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CcEEEEC
Confidence 45778888888888887777777788888889998887654 3455655
No 54
>PLN03160 uncharacterized protein; Provisional
Probab=20.14 E-value=49 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHhhee
Q psy6704 57 HDGKSFTFWALIGLLYLFALINLVLTLTLMTM 88 (332)
Q Consensus 57 ~GwRk~cly~~vllL~il~viNL~LTiwIl~V 88 (332)
+.++.+|+.+++.++++|+++=++|...+++.
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrP 64 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVLVFTVFRV 64 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHheeeEEEEc
Done!