Query psy6704
Match_columns 332
No_of_seqs 104 out of 121
Neff 5.1
Searched_HMMs 29240
Date Sat Aug 17 00:55:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izo_F Fiber; pentameric pento 63.8 1.3E+02 0.0044 31.1 14.3 92 217-312 303-428 (581)
2 3hd7_B Syntaxin-1A; membrane p 62.5 4.4 0.00015 32.6 2.7 22 60-81 83-104 (109)
3 3aqj_A GPV, baseplate assembly 55.2 19 0.00063 29.9 5.4 60 174-247 24-83 (134)
4 3hd7_B Syntaxin-1A; membrane p 47.4 9.2 0.00032 30.7 2.2 25 53-77 79-103 (109)
5 3aqj_A GPV, baseplate assembly 43.6 71 0.0024 26.3 7.2 36 221-256 42-77 (134)
6 2ks0_A Uncharacterized protein 31.0 40 0.0014 25.4 3.3 40 229-278 7-46 (71)
7 3t5g_B Retinal ROD rhodopsin-s 28.6 83 0.0029 27.1 5.3 20 170-189 19-38 (152)
8 1zxu_A AT5G01750 protein; PFAM 25.8 42 0.0014 29.3 3.1 32 156-189 38-69 (217)
9 3izo_F Fiber; pentameric pento 24.9 5.8E+02 0.02 26.2 12.3 51 217-268 207-258 (581)
10 3qr8_A GPV, baseplate assembly 18.3 12 0.00042 33.1 -2.1 25 219-244 133-157 (211)
No 1
>3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5}
Probab=63.85 E-value=1.3e+02 Score=31.10 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=46.9
Q ss_pred CCCCceEeec---ce-EEE--EcCceeEEEeceEEEEeecceEEEe--------------------cCceEEEecCCceE
Q psy6704 217 IEDDLTLRSE---TY-TRL--KGNEGISMEGRTITWTADKDIFLKS--------------------VNGSLTLAAENGIF 270 (332)
Q Consensus 217 ~~~~L~LeS~---tr-L~~--~g~eGV~i~a~~i~~~a~~dI~L~S--------------------~~G~i~Lda~~gI~ 270 (332)
....|++++. ++ |.+ +..+|..+++.+|.+.+...+.+.+ .++.|...+++|+.
T Consensus 303 ~g~gl~~~~~~~~~~~l~v~~~~~~Gl~~~~~~i~~~~G~GL~~~n~~~~~~~~l~~~~~~gl~~~~~~~i~vklG~gL~ 382 (581)
T 3izo_F 303 YNKGLYLFTASNNSKKLEVNLSTAKGLMFDATAIAINAGDGLEFGSLNAPNSNPLKTKIGHGLEFDSNKAMVPKLGTGLS 382 (581)
T ss_pred ccCceeeeccccccccEEEeecccCCcccccceeEEeecCCcEEecccccccccccccccccceeccCCceeeeccCcee
Confidence 4455555543 11 333 5556666666666666666665544 23567777777777
Q ss_pred Eec-CCccccccc------ccccCCCCC-cceEEeEecCCCeEEEEecCC
Q psy6704 271 LEV-KKLPFVKKN------LFLDSNLHN-AAFKLCVCMPGGRIFRVKADD 312 (332)
Q Consensus 271 i~~-~~LP~~~~~------~~~~s~~~~-~~yklCvC~p~GkLFlv~~~~ 312 (332)
++- .+|-..... +..+..+.. ..|+ .++.|||++-..-
T Consensus 383 f~s~G~i~~~~~~~~~~TLWTtpdPspNc~i~~----~~D~KltL~LtK~ 428 (581)
T 3izo_F 383 FDSTGAITVGNKNNDKLTLWTTPAPSPNCRLNA----EKDAKLTLVLTKC 428 (581)
T ss_pred ecCCCcEEecCCCCCCccccCCCCCCCCeEEec----CCCcEEEEEEEec
Confidence 743 444332110 111111111 3344 3678888876643
No 2
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=62.45 E-value=4.4 Score=32.63 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy6704 60 KSFTFWALIGLLYLFALINLVL 81 (332)
Q Consensus 60 Rk~cly~~vllL~il~viNL~L 81 (332)
||+.+|++++++.+++|+-+++
T Consensus 83 rkk~~i~l~~~~i~~~i~~~~~ 104 (109)
T 3hd7_B 83 RRKKIMIIICCVILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceehHHHHHHHHHHHHHHh
Confidence 4445555544444444433333
No 3
>3aqj_A GPV, baseplate assembly protein V; bacteriophage, tail spike, iron binding, beta-helix, infecti binding protein; 1.27A {Enterobacteria phage P2}
Probab=55.17 E-value=19 Score=29.86 Aligned_cols=60 Identities=10% Similarity=0.232 Sum_probs=33.6
Q ss_pred EEeCCCCCceeEEecCCcceEecCCcccceeeeeEEeceeecCCCCCceEeecceEEEEcCceeEEEeceEEEE
Q psy6704 174 NVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWT 247 (332)
Q Consensus 174 ~V~d~~~g~~lFsad~~~~ev~ip~g~~~L~~~~V~T~~Irs~~~~~L~LeS~trL~~~g~eGV~i~a~~i~~~ 247 (332)
.++-| ||. .|.-|.+...+.+ ..+.|=.|.|+ ..+.++.|. ++++|+++|.|++..+++.
T Consensus 24 ~~~f~-DGa-~ieYd~~~~~L~i---------~g~~t~~i~a~--~~v~vta~~-i~v~A~~~vtid~p~~~~t 83 (134)
T 3aqj_A 24 HIRFP-DGA-VIEYEPETSALTV---------SGIKTASVTAS--GSVTATVPV-VMVKASTRVTLDTPEVVCT 83 (134)
T ss_dssp EEECT-TSC-EEEEETTTTEEEE---------EEEEEEEEEEE--EEEEEECSE-EEEECSSEEEEESSEEEEE
T ss_pred EEEeC-CCC-EEEEeCCCCEEEE---------eccceEEEEcC--CcEEEecCc-eEEEecccEEEecCceEEe
Confidence 34444 454 5555554444444 23344444432 456666666 7788888888888765544
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=47.44 E-value=9.2 Score=30.70 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=18.7
Q ss_pred cceeecchhhHHHHHHHHHHHHHHH
Q psy6704 53 HTGLHDGKSFTFWALIGLLYLFALI 77 (332)
Q Consensus 53 ~~Gi~GwRk~cly~~vllL~il~vi 77 (332)
.-.-|.|+-+|++++++++.|++++
T Consensus 79 qk~~rkk~~i~l~~~~i~~~i~~~~ 103 (109)
T 3hd7_B 79 QSKARRKKIMIIICCVILGIIIAST 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcceehHHHHHHHHHHHHHH
Confidence 3345778889999888888877765
No 5
>3aqj_A GPV, baseplate assembly protein V; bacteriophage, tail spike, iron binding, beta-helix, infecti binding protein; 1.27A {Enterobacteria phage P2}
Probab=43.56 E-value=71 Score=26.25 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=18.2
Q ss_pred ceEeecceEEEEcCceeEEEeceEEEEeecceEEEe
Q psy6704 221 LTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKS 256 (332)
Q Consensus 221 L~LeS~trL~~~g~eGV~i~a~~i~~~a~~dI~L~S 256 (332)
|++.....+.+.|+.+|.+.+..+.+.|...|.|++
T Consensus 42 L~i~g~~t~~i~a~~~v~vta~~i~v~A~~~vtid~ 77 (134)
T 3aqj_A 42 LTVSGIKTASVTASGSVTATVPVVMVKASTRVTLDT 77 (134)
T ss_dssp EEEEEEEEEEEEEEEEEEEECSEEEEECSSEEEEES
T ss_pred EEEeccceEEEEcCCcEEEecCceEEEecccEEEec
Confidence 334333335555555555555555555555444443
No 6
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=31.03 E-value=40 Score=25.37 Aligned_cols=40 Identities=28% Similarity=0.592 Sum_probs=25.7
Q ss_pred EEEEcCceeEEEeceEEEEeecceEEEecCceEEEecCCceEEecCCccc
Q psy6704 229 TRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPF 278 (332)
Q Consensus 229 L~~~g~eGV~i~a~~i~~~a~~dI~L~S~~G~i~Lda~~gI~i~~~~LP~ 278 (332)
|.+.|-+||. .|.. ..|.|++..|.+.+.+++ +.+.+|-.
T Consensus 7 l~itGv~~V~------sFd~-e~i~L~T~~G~L~IkG~~---L~I~~L~l 46 (71)
T 2ks0_A 7 LSLTGVSKVQ------SFDP-KEILLETIQGVLSIKGEK---LGIKHLDL 46 (71)
T ss_dssp EEECCEEEEE------EECS-SEEEEEETTEEEEEEEEC---CC-----C
T ss_pred EEEeCCcCEE------EECC-CEEEEEeCceEEEEEcCC---cEEeEeec
Confidence 7777776652 3332 378999999999999998 66677744
No 7
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=28.61 E-value=83 Score=27.05 Aligned_cols=20 Identities=10% Similarity=0.053 Sum_probs=18.0
Q ss_pred eeeEEEeCCCCCceeEEecC
Q psy6704 170 VKEFNVYDPTDHLPIFSTGF 189 (332)
Q Consensus 170 ~~~F~V~d~~~g~~lFsad~ 189 (332)
.+.|.++|.++|+.||-..+
T Consensus 19 ~~~m~iRD~dtG~vLwe~~k 38 (152)
T 3t5g_B 19 LNWMNLRDAETGKILWQGTE 38 (152)
T ss_dssp EEEEEEEETTTCCEEEEECS
T ss_pred EEEEEEEEcCCCcEEEEecC
Confidence 48899999999999999865
No 8
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=25.78 E-value=42 Score=29.34 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=13.4
Q ss_pred eeEEEcCCceEEEeeeeEEEeCCCCCceeEEecC
Q psy6704 156 RMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGF 189 (332)
Q Consensus 156 ~~L~v~~~~~~~~~~~~F~V~d~~~g~~lFsad~ 189 (332)
.+|.|-.+...+.+ +.|.|+|+ +|+++|.++.
T Consensus 38 ~~l~vkqk~~~~~~-~~f~V~D~-~G~~vf~V~~ 69 (217)
T 1zxu_A 38 IDMAIVRKMMSLTD-GNFVITDV-NGNLLFKVKE 69 (217)
T ss_dssp EEEEEECC-----C-CCEEEEET-TSCEEEEEEC
T ss_pred cEEEEEEEEeEeeC-CCEEEEeC-CCCEEEEEEc
Confidence 34444444344333 45555554 3555555554
No 9
>3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5}
Probab=24.94 E-value=5.8e+02 Score=26.23 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCCCceEeecce-EEEEcCceeEEEeceEEEEeecceEEEecCceEEEecCCc
Q psy6704 217 IEDDLTLRSETY-TRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENG 268 (332)
Q Consensus 217 ~~~~L~LeS~tr-L~~~g~eGV~i~a~~i~~~a~~dI~L~S~~G~i~Lda~~g 268 (332)
...+|.+..... |++....|+.+...++.+.....+.+.+ +|.|.|+...+
T Consensus 207 ~~~PL~~~ns~~~Ltl~~G~gL~v~n~~L~~klg~pL~~~n-nG~L~l~~~~p 258 (581)
T 3izo_F 207 YGAPLHVTDDLNTLTVATGPGVTINNTSLQTKVTGALGFDS-QGNMQLNVAGG 258 (581)
T ss_pred ecCCceeccCCCceEEecCCCeEEeCCcEEEEecCCeEEcc-cCcEEEeecCC
Confidence 345677763222 7788777888887777766666666644 46777766653
No 10
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=18.34 E-value=12 Score=33.06 Aligned_cols=25 Identities=8% Similarity=0.225 Sum_probs=13.1
Q ss_pred CCceEeecceEEEEcCceeEEEeceE
Q psy6704 219 DDLTLRSETYTRLKGNEGISMEGRTI 244 (332)
Q Consensus 219 ~~L~LeS~trL~~~g~eGV~i~a~~i 244 (332)
+...|+.++ ++++|.+.|.+++..+
T Consensus 133 ~~i~v~~~~-i~v~A~~~itl~tp~v 157 (211)
T 3qr8_A 133 GSVTATVPV-VMVKASTRVTLDTPEV 157 (211)
T ss_dssp SCCCCCCSC-CCCCCSSCCCCCSSCC
T ss_pred cceEEeccc-eEEEecceEEEeccce
Confidence 445555544 5555555555555543
Done!