RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6704
         (332 letters)



>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus
           anthracis [TaxId: 1392]}
          Length = 124

 Score = 27.3 bits (60), Expect = 1.3
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 282 NLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNINTSPEHHPC 331
            ++   N+ NA++ LC C     +F+  ++      A   +  +    P 
Sbjct: 36  KVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTKRPVPP 85


>d2pora_ f.4.3.1 (A:) Porin {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 301

 Score = 26.1 bits (56), Expect = 6.1
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 9/57 (15%)

Query: 107 VKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQ--------GGSVHIDVNFGVNRTR 155
           VKL GD  +G +Y  D  ++    S +  T           G S     + G     
Sbjct: 2   VKLSGDARMGVMYNGDD-WNFSSRSRVLFTMSGTTDSGLEFGASFKAHESVGAETGE 57


>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 180

 Score = 25.0 bits (54), Expect = 10.0
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 122 DGYFSSFKDS-------GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFN 174
           + YF   K         G  +    G  + +      N+  + LSI  +G++ +   E  
Sbjct: 42  EAYFQKEKPQSRTSGLLGPTLYAEVGDIMKVHF---KNKAHKPLSIHAQGIKYSKFSEGA 98

Query: 175 VY 176
            Y
Sbjct: 99  SY 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,993
Number of extensions: 59759
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 4
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)