Query psy6707
Match_columns 257
No_of_seqs 227 out of 841
Neff 4.3
Searched_HMMs 46136
Date Sat Aug 17 00:58:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0528|consensus 100.0 2.5E-37 5.3E-42 298.7 15.0 131 106-238 319-459 (511)
2 KOG0527|consensus 99.9 7.6E-29 1.7E-33 232.6 3.7 82 105-188 55-143 (331)
3 cd01389 MATA_HMG-box MATA_HMG- 99.9 8.4E-23 1.8E-27 152.9 2.9 70 112-183 1-77 (77)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 1.8E-20 3.9E-25 138.9 2.4 65 112-178 1-72 (72)
5 PTZ00199 high mobility group p 99.6 9.3E-17 2E-21 125.8 1.0 71 104-176 14-93 (94)
6 smart00398 HMG high mobility g 99.5 3.3E-15 7.2E-20 106.8 1.2 63 112-176 1-70 (70)
7 PF00505 HMG_box: HMG (high mo 99.5 7.1E-16 1.5E-20 111.2 -3.1 62 113-176 1-69 (69)
8 cd00084 HMG-box High Mobility 99.4 4.1E-14 8.8E-19 100.1 1.3 59 113-173 1-66 (66)
9 cd01390 HMGB-UBF_HMG-box HMGB- 99.4 3.9E-14 8.5E-19 101.0 1.2 58 113-172 1-65 (66)
10 KOG3248|consensus 99.4 8.8E-14 1.9E-18 131.5 3.6 69 110-180 189-264 (421)
11 PF09011 HMG_box_2: HMG-box do 99.3 1.7E-13 3.7E-18 101.8 -2.1 64 110-175 1-72 (73)
12 KOG0381|consensus 99.2 1.6E-12 3.5E-17 99.9 1.1 66 109-176 17-92 (96)
13 COG5648 NHP6B Chromatin-associ 99.2 1.5E-12 3.3E-17 116.1 1.0 70 105-176 63-139 (211)
14 KOG0526|consensus 99.2 3.7E-12 8.1E-17 126.0 3.2 72 104-180 527-603 (615)
15 KOG2746|consensus 98.6 2.9E-08 6.3E-13 100.6 3.5 72 106-181 175-255 (683)
16 COG5648 NHP6B Chromatin-associ 97.7 4.1E-06 8.9E-11 75.3 -2.1 106 52-174 96-210 (211)
17 KOG4715|consensus 97.5 8.7E-05 1.9E-09 70.8 4.1 72 106-179 58-136 (410)
18 PF14887 HMG_box_5: HMG (high 92.7 0.1 2.2E-06 41.1 2.6 38 140-177 35-72 (85)
19 PF06382 DUF1074: Protein of u 91.7 0.037 8.1E-07 49.1 -0.8 50 116-165 80-132 (183)
20 PF04769 MAT_Alpha1: Mating-ty 91.2 0.098 2.1E-06 47.0 1.3 53 106-162 37-92 (201)
21 PTZ00199 high mobility group p 67.2 9.8 0.00021 29.7 4.2 33 180-212 13-45 (94)
22 cd01388 SOX-TCF_HMG-box SOX-TC 60.4 0.13 2.7E-06 37.9 -7.3 39 52-97 27-67 (72)
23 cd01389 MATA_HMG-box MATA_HMG- 55.3 0.24 5.3E-06 36.8 -6.5 41 52-100 27-69 (77)
24 TIGR03481 HpnM hopanoid biosyn 50.7 15 0.00032 32.5 2.9 43 133-175 64-108 (198)
25 PF05494 Tol_Tol_Ttg2: Toluene 40.3 27 0.00058 29.5 2.8 42 135-176 40-83 (170)
26 KOG0527|consensus 39.3 3.9 8.5E-05 39.4 -2.7 54 53-112 89-144 (331)
27 PF05388 Carbpep_Y_N: Carboxyp 35.9 46 0.001 27.4 3.4 33 136-168 46-78 (113)
28 PRK15117 ABC transporter perip 30.9 42 0.00091 30.0 2.6 44 133-176 68-113 (211)
29 KOG0526|consensus 22.9 11 0.00024 39.0 -2.8 41 51-101 558-600 (615)
30 COG3064 TolA Membrane protein 22.7 92 0.002 30.7 3.4 28 12-39 111-138 (387)
31 PF12336 SOXp: SOX transcripti 21.5 37 0.0008 27.0 0.4 18 177-194 1-18 (84)
32 KOG0871|consensus 21.5 97 0.0021 27.2 3.0 34 23-59 118-151 (156)
No 1
>KOG0528|consensus
Probab=100.00 E-value=2.5e-37 Score=298.69 Aligned_cols=131 Identities=51% Similarity=0.824 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCccc
Q psy6707 106 NMYSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178 (257)
Q Consensus 106 ~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~ 178 (257)
+...+.|||||||| ||+|.++.|++ ++|.+||||||.+|+.||..||+||+++.++|...|.++||||||+
T Consensus 319 ~~ss~PHIKRPMNA--FMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYk 396 (511)
T KOG0528|consen 319 RASSEPHIKRPMNA--FMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYK 396 (511)
T ss_pred cCCCCccccCCcch--hhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccC
Confidence 45677899999999 99999999975 7899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccchhhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCC---CCCCCcc
Q psy6707 179 PRPKRTCIVDGKKMRISEYKTLMRQRRNEMRQLWCRGEAGPSGSGGPAFPFPG---DGSLSPS 238 (257)
Q Consensus 179 Prrk~k~~~~gkk~~~s~y~~l~~~rr~E~r~~w~~~~~~~s~~~~~s~~~~~---~gs~s~~ 238 (257)
||.||||+++|||+++++|+.+|+.||+|||++||.+..+....+.+.+++|+ +|..+++
T Consensus 397 PRPKRTCvvdGKklRigEYK~lMr~rrqemrq~~~i~~q~q~~~s~a~v~~~ga~~a~~~s~~ 459 (511)
T KOG0528|consen 397 PRPKRTCVVDGKKLRIGEYKALMRNRRQEMRQFFDIGSQAQIPISLAGVVYPGAAMAGMPSPH 459 (511)
T ss_pred CCCCceeeecCceeehHHHHHHHHhHHHHhhcccccCCccCccccccccccccccccCCCCcc
Confidence 99999999999999999999999999999999999998776555566667775 3444443
No 2
>KOG0527|consensus
Probab=99.95 E-value=7.6e-29 Score=232.64 Aligned_cols=82 Identities=34% Similarity=0.588 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcc
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 177 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY 177 (257)
..++..+|||||||| ||||++..|++ +||+||||+||++||.|+++||.||+++|++||++|+++||||||
T Consensus 55 ~~k~~~~hIKRPMNA--FMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKY 132 (331)
T KOG0527|consen 55 KDKTSTDRIKRPMNA--FMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKY 132 (331)
T ss_pred cCCCCccccCCCcch--hhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCccc
Confidence 367888999999999 99999999964 899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q psy6707 178 RPRPKRTCIVD 188 (257)
Q Consensus 178 ~Prrk~k~~~~ 188 (257)
+||||++....
T Consensus 133 RPRRKkk~~~~ 143 (331)
T KOG0527|consen 133 RPRRKKKKRPK 143 (331)
T ss_pred ccccccccccc
Confidence 99999886654
No 3
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.86 E-value=8.4e-23 Score=152.87 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=66.2
Q ss_pred CCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCCCC
Q psy6707 112 HDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183 (257)
Q Consensus 112 ~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prrk~ 183 (257)
|||||+|| ||||+++.|.. ++++|||++||++|+.|++++|++|.++|++++++|.++||+|+|+|+++.
T Consensus 1 ~~kRP~na--f~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~~~~ 77 (77)
T cd01389 1 KIPRPRNA--FILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRKSS 77 (77)
T ss_pred CCCCCCcH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCC
Confidence 79999999 99999999962 678999999999999999999999999999999999999999999999863
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.79 E-value=1.8e-20 Score=138.86 Aligned_cols=65 Identities=38% Similarity=0.638 Sum_probs=61.9
Q ss_pred CCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCccc
Q psy6707 112 HDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178 (257)
Q Consensus 112 ~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~ 178 (257)
|||||+|| ||+|+++.|.. +++.|||++||++|+.||+++|++|.++|++++++|.++||||+|+
T Consensus 1 ~iKrP~na--f~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y~ 72 (72)
T cd01388 1 HIKRPMNA--FMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72 (72)
T ss_pred CCCCCCcH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 79999999 99999999952 6889999999999999999999999999999999999999999996
No 5
>PTZ00199 high mobility group protein; Provisional
Probab=99.61 E-value=9.3e-17 Score=125.82 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCCccchhhhcccCCCC-------CC--CCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy6707 104 DKNMYSPHHDKSEEQDLLMSVWGAGGESP-------YK--MPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 174 (257)
Q Consensus 104 ~k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~--n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPd 174 (257)
.+..+||++||||+|| ||||+.++|.. ++ +++||++||++|+.||+++|.+|.++|+.++++|..++..
T Consensus 14 ~k~~kdp~~PKrP~sA--Y~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~ 91 (94)
T PTZ00199 14 KRKKKDPNAPKRALSA--YMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAE 91 (94)
T ss_pred CCCCCCCCCCCCCCcH--HHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999 99999999952 33 5799999999999999999999999999999999999888
Q ss_pred Cc
Q psy6707 175 YR 176 (257)
Q Consensus 175 YK 176 (257)
|+
T Consensus 92 Y~ 93 (94)
T PTZ00199 92 YA 93 (94)
T ss_pred Hh
Confidence 74
No 6
>smart00398 HMG high mobility group.
Probab=99.51 E-value=3.3e-15 Score=106.77 Aligned_cols=63 Identities=24% Similarity=0.426 Sum_probs=58.8
Q ss_pred CCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 112 HDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 112 ~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
.||||+|+ ||||+++.|.. ++..+|+++||++|+.|++++|.+|.++|+.++++|.+++++|+
T Consensus 1 ~pkrp~~~--y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSA--FMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcH--HHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999 99999999853 56789999999999999999999999999999999999999995
No 7
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.50 E-value=7.1e-16 Score=111.17 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=56.2
Q ss_pred CCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 113 DKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 113 pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
||||+|| ||||+++.+. .+++.+|+++||++|+.|++++|.+|.++|++++++|.+++++|+
T Consensus 1 PkrP~~a--f~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNA--FMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--H--HHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCH--HHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999 9999999885 267899999999999999999999999999999999999999885
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.42 E-value=4.1e-14 Score=100.06 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=55.1
Q ss_pred CCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCC
Q psy6707 113 DKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHP 173 (257)
Q Consensus 113 pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yP 173 (257)
||||+|+ ||+|+++.|.. ++..+|+++||.+|+.|++++|.+|.++|+.++++|.++||
T Consensus 1 pkrp~~a--f~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~~ 66 (66)
T cd00084 1 PKRPLSA--YFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66 (66)
T ss_pred CCCCCcH--HHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7999999 99999999953 56799999999999999999999999999999999999876
No 9
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.42 E-value=3.9e-14 Score=101.05 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=53.9
Q ss_pred CCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhC
Q psy6707 113 DKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKH 172 (257)
Q Consensus 113 pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~y 172 (257)
||||+|| ||+|+++.|.. +++.+|+++||++|+.||+++|.+|.++|++++++|.+++
T Consensus 1 Pkrp~sa--f~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSA--YFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcH--HHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999 99999999953 5789999999999999999999999999999999998864
No 10
>KOG3248|consensus
Probab=99.41 E-value=8.8e-14 Score=131.51 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=62.1
Q ss_pred CCCCCCCCCccchhhhcccCCCC------C-CCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCC
Q psy6707 110 PHHDKSEEQDLLMSVWGAGGESP------Y-KMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPR 180 (257)
Q Consensus 110 P~~pKRP~nAnaFmlF~~e~R~~------l-~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Pr 180 (257)
-.|||.|+|| ||||.++.|.+ + ..++|.+|||++|..||.||...|+++|.++++.|++.||+|.-|-.
T Consensus 189 kphiKKPLNA--FmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdN 264 (421)
T KOG3248|consen 189 KPHIKKPLNA--FMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 264 (421)
T ss_pred CccccccHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 3679999999 99999999975 2 35889999999999999999999999999999999999999975543
No 11
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.29 E-value=1.7e-13 Score=101.76 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=54.8
Q ss_pred CCCCCCCCCccchhhhcccCCCC--------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy6707 110 PHHDKSEEQDLLMSVWGAGGESP--------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 175 (257)
Q Consensus 110 P~~pKRP~nAnaFmlF~~e~R~~--------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdY 175 (257)
|+.||||+|| |+||+.+++.. ....||++.||.+|+.||+++|.+|.++|..++++|..++..|
T Consensus 1 p~kpK~~~sa--y~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~ 72 (73)
T PF09011_consen 1 PKKPKRPPSA--YNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEW 72 (73)
T ss_dssp SSS--SSSSH--HHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCH--HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999 99999998753 3568999999999999999999999999999999999887554
No 12
>KOG0381|consensus
Probab=99.24 E-value=1.6e-12 Score=99.89 Aligned_cols=66 Identities=24% Similarity=0.426 Sum_probs=59.8
Q ss_pred CC--CCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCC-CCc
Q psy6707 109 SP--HHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHP-DYR 176 (257)
Q Consensus 109 dP--~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yP-dYK 176 (257)
|| +.||||++| ||+|+.+.|.. ++..||+|+||++|+.|++++|.+|...|..++++|..+.. .|+
T Consensus 17 ~p~~~~pkrp~sa--~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~ 92 (96)
T KOG0381|consen 17 DPNAQAPKRPLSA--FFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYK 92 (96)
T ss_pred CCCCCCCCCCCcH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77 499999999 99999997752 56789999999999999999999999999999999999988 664
No 13
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.24 E-value=1.5e-12 Score=116.06 Aligned_cols=70 Identities=19% Similarity=0.356 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
++.+|||.||||++| ||+|+.+.|. .++.++|+++||++|++|++++|+||+++|..++++|...--.|.
T Consensus 63 r~k~dpN~PKRp~sa--yf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~ 139 (211)
T COG5648 63 RKKKDPNGPKRPLSA--YFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYN 139 (211)
T ss_pred HHhcCCCCCCCchhH--HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhh
Confidence 467999999999999 9999999995 277899999999999999999999999999999999998888775
No 14
>KOG0526|consensus
Probab=99.23 E-value=3.7e-12 Score=125.99 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCCCccchhhhcccCCCC-----CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCccc
Q psy6707 104 DKNMYSPHHDKSEEQDLLMSVWGAGGESP-----YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178 (257)
Q Consensus 104 ~k~~kdP~~pKRP~nAnaFmlF~~e~R~~-----l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~ 178 (257)
.|+.||||+|||+++| ||+|.+.-|.. ++.+||+|.+|++|+.|+. |.+|.++|+..|++|..++-+|+ .
T Consensus 527 ~kk~kdpnapkra~sa--~m~w~~~~r~~ik~dgi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk-~ 601 (615)
T KOG0526|consen 527 GKKKKDPNAPKRATSA--YMLWLNASRESIKEDGISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYK-N 601 (615)
T ss_pred cccCCCCCCCccchhH--HHHHHHhhhhhHhhcCchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhc-C
Confidence 5678999999999999 99999999975 6789999999999999999 99999999999999999999998 4
Q ss_pred CC
Q psy6707 179 PR 180 (257)
Q Consensus 179 Pr 180 (257)
+.
T Consensus 602 g~ 603 (615)
T KOG0526|consen 602 GQ 603 (615)
T ss_pred CC
Confidence 43
No 15
>KOG2746|consensus
Probab=98.58 E-value=2.9e-08 Score=100.62 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCccchhhhcccCCC---------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 106 NMYSPHHDKSEEQDLLMSVWGAGGES---------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 106 ~~kdP~~pKRP~nAnaFmlF~~e~R~---------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
.+.|-+||.||||| ||||++.+|- ...|..||||||+.|..|-..||+.|.++|.+.|+.|.+. +++
T Consensus 175 nkr~k~HirrPMna--f~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka--e~~ 250 (683)
T KOG2746|consen 175 NKRDKDHIRRPMNA--FHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA--EWK 250 (683)
T ss_pred CcCcchhhhhhhHH--HHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh--hcc
Confidence 34677899999999 9999999992 1568999999999999999999999999999999999997 555
Q ss_pred ccCCC
Q psy6707 177 YRPRP 181 (257)
Q Consensus 177 Y~Prr 181 (257)
..++-
T Consensus 251 k~sk~ 255 (683)
T KOG2746|consen 251 KDSKE 255 (683)
T ss_pred cccch
Confidence 44443
No 16
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.68 E-value=4.1e-06 Score=75.28 Aligned_cols=106 Identities=17% Similarity=0.271 Sum_probs=90.5
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccchhhhcccC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYSPHDKNMYSPHHDKSEEQDLLMSVWGAGG 129 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~P~~k~~kdP~~pKRP~nAnaFmlF~~e~ 129 (257)
+.|.+.++ |++|+.++ +.|+.+|+..+. .|..+|..+.. -|.+ +.| +++|..+ |+-+....
T Consensus 96 l~~~e~~k~~~e~WK~Lt--d~eke~y~k~~~-----~~~erYq~ek~-~y~~-----k~~--~~~~~~~--~~e~~~~~ 158 (211)
T COG5648 96 LTFGEVGKLLSEKWKELT--DEEKEPYYKEAN-----SDRERYQREKE-EYNK-----KLP--NKAPIGP--FIENEPKI 158 (211)
T ss_pred CChHHHHHHHHHHHHhcc--HhhhhhHHHHHh-----hHHHHHHHHHH-hhhc-----ccC--CCCCCch--hhhccHHh
Confidence 57888888 99999999 999999999998 99999998877 6633 333 4567777 88888888
Q ss_pred CCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy6707 130 ESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 174 (257)
Q Consensus 130 R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPd 174 (257)
|+. -.-.++-+++|..|..|++..|.+|.+.+.+++.+|...||+
T Consensus 159 r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~~ 210 (211)
T COG5648 159 RPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPE 210 (211)
T ss_pred ccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhccc
Confidence 874 124788999999999999999999999999999999998885
No 17
>KOG4715|consensus
Probab=97.52 E-value=8.7e-05 Score=70.81 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCccc
Q psy6707 106 NMYSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178 (257)
Q Consensus 106 ~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~ 178 (257)
..+.|.-|-+|+-. ||-|++..... +.--||.|++|.||..|++++|+.|..+-+.+|.+|.+.+-.|.-.
T Consensus 58 ~pkpPkppekpl~p--ymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~s 135 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMP--YMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNS 135 (410)
T ss_pred CCCCCCCCCcccch--hhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45678888899999 99999887753 4568999999999999999999999999999999999999888644
Q ss_pred C
Q psy6707 179 P 179 (257)
Q Consensus 179 P 179 (257)
|
T Consensus 136 p 136 (410)
T KOG4715|consen 136 P 136 (410)
T ss_pred c
Confidence 3
No 18
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=92.67 E-value=0.1 Score=41.12 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=34.9
Q ss_pred HHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcc
Q psy6707 140 PDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 177 (257)
Q Consensus 140 KiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY 177 (257)
+.++..|++|++.+|-+|+..|.++..+|+.++-.|+-
T Consensus 35 kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~ 72 (85)
T PF14887_consen 35 KAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRS 72 (85)
T ss_dssp HHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999863
No 19
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=91.68 E-value=0.037 Score=49.14 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=42.9
Q ss_pred CCCccchhhhcccCCCC---CCCCCccHHHhhhhccCChhhhhhhHHHHHHHH
Q psy6707 116 EEQDLLMSVWGAGGESP---YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLS 165 (257)
Q Consensus 116 P~nAnaFmlF~~e~R~~---l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lK 165 (257)
|...|+|+=|.+++|.. ++..|+....+.+|..||+++|..|..++....
T Consensus 80 pvTnnaYLNFLReFRrkh~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~~ 132 (183)
T PF06382_consen 80 PVTNNAYLNFLREFRRKHCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPSVR 132 (183)
T ss_pred CccchHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcchhh
Confidence 45567799999999975 788999999999999999999999999876544
No 20
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=91.21 E-value=0.098 Score=46.98 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCccchhhhcccCCC---CCCCCCccHHHhhhhccCChhhhhhhHHHHH
Q psy6707 106 NMYSPHHDKSEEQDLLMSVWGAGGES---PYKMPEETPDKGARWKAMSNAEKQPYYEEQS 162 (257)
Q Consensus 106 ~~kdP~~pKRP~nAnaFmlF~~e~R~---~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~ 162 (257)
.+..+.+.|||.|+ ||+|+.-+-. .+...++|.+|+..|..-+. |..|.-.|.
T Consensus 37 ~~~~~~~~kr~lN~--Fm~FRsyy~~~~~~~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak 92 (201)
T PF04769_consen 37 RKRSPEKAKRPLNG--FMAFRSYYSPIFPPLPQKELSGILTKLWEKDPF--KNKWSLMAK 92 (201)
T ss_pred ccccccccccchhH--HHHHHHHHHhhcCCcCHHHHHHHHHHHHhCCcc--HhHHHHHhh
Confidence 44566788999999 9999887663 36789999999999998554 444655554
No 21
>PTZ00199 high mobility group protein; Provisional
Probab=67.23 E-value=9.8 Score=29.71 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 180 RPKRTCIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 180 rrk~k~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
+++++.+.+.++.+.++|..|+...|.++....
T Consensus 13 ~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~ 45 (94)
T PTZ00199 13 NKRKKKDPNAPKRALSAYMFFAKEKRAEIIAEN 45 (94)
T ss_pred cCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 345556788899999999999999999887653
No 22
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=60.39 E-value=0.13 Score=37.91 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=33.3
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDK 97 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~ 97 (257)
+.+.++|+ ++.|..|+ .++|.+|.+++. .++..|..++.
T Consensus 27 ~~~~eisk~l~~~Wk~ls--~~eK~~y~~~a~-----~~k~~y~~~~p 67 (72)
T cd01388 27 KENRAISKILGDRWKALS--NEEKQPYYEEAK-----KLKELHMKLYP 67 (72)
T ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH-----HHHHHHHHHCc
Confidence 47889999 88999999 999999999999 88887766554
No 23
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=55.30 E-value=0.24 Score=36.78 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=36.1
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMY 100 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y 100 (257)
+.++++|+ ++.|..|+ .++|.+|.++|. .++.+|..++. .|
T Consensus 27 ~~~~eisk~~g~~Wk~ls--~eeK~~y~~~A~-----~~k~~~~~~~p-~Y 69 (77)
T cd01389 27 LTNNEISRIIGRMWRSES--PEVKAYYKELAE-----EEKERHAREYP-DY 69 (77)
T ss_pred CCHHHHHHHHHHHHhhCC--HHHHHHHHHHHH-----HHHHHHHHHCC-CC
Confidence 47889999 89999999 999999999999 89988887775 55
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=50.75 E-value=15 Score=32.51 Aligned_cols=43 Identities=12% Similarity=0.355 Sum_probs=35.3
Q ss_pred CCCCCccH-HHhhhhccCChhhhhhhHHHHHH-HHHHHHHhCCCC
Q psy6707 133 YKMPEETP-DKGARWKAMSNAEKQPYYEEQSR-LSKLHMEKHPDY 175 (257)
Q Consensus 133 l~n~eISK-iLGe~Wk~LS~eeK~pY~e~A~~-lKe~H~k~yPdY 175 (257)
++...||+ .||..|+.+|+++|+.|.+.-.. +..-|...+-.|
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y 108 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSY 108 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677877 79999999999999999998888 677786666555
No 25
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=40.29 E-value=27 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=29.2
Q ss_pred CCCccH-HHhhhhccCChhhhhhhHHHHHHH-HHHHHHhCCCCc
Q psy6707 135 MPEETP-DKGARWKAMSNAEKQPYYEEQSRL-SKLHMEKHPDYR 176 (257)
Q Consensus 135 n~eISK-iLGe~Wk~LS~eeK~pY~e~A~~l-Ke~H~k~yPdYK 176 (257)
...||+ .||.-|+.+|+++++.|.+.-... ..-|...+..|.
T Consensus 40 ~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~ 83 (170)
T PF05494_consen 40 FERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYS 83 (170)
T ss_dssp HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344443 689999999999999999877665 556666655554
No 26
>KOG0527|consensus
Probab=39.31 E-value=3.9 Score=39.45 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=37.0
Q ss_pred ccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy6707 53 NYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYSPHDKNMYSPHH 112 (257)
Q Consensus 53 n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~P~~k~~kdP~~ 112 (257)
+=+|+|| =..|+.|+ ..||.+|.|+|+.+.--+-+. | |.= -|.|++|+++.+..
T Consensus 89 HNSEISK~LG~~WK~Ls--e~EKrPFi~EAeRLR~~Hmke-h-PdY--KYRPRRKkk~~~~~ 144 (331)
T KOG0527|consen 89 HNSEISKRLGAEWKLLS--EEEKRPFVDEAERLRAQHMKE-Y-PDY--KYRPRRKKKKRPKL 144 (331)
T ss_pred hhHHHHHHHHHHHhhcC--HhhhccHHHHHHHHHHHHHHh-C-CCc--cccccccccccccc
Confidence 4579999 66799999 999999999999655433331 1 111 26788766555443
No 27
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=35.94 E-value=46 Score=27.41 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=27.0
Q ss_pred CCccHHHhhhhccCChhhhhhhHHHHHHHHHHH
Q psy6707 136 PEETPDKGARWKAMSNAEKQPYYEEQSRLSKLH 168 (257)
Q Consensus 136 ~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H 168 (257)
..|++.||+.++.|+.|.|+-|.|.....-+.-
T Consensus 46 ~~~~~~l~e~l~~Lt~e~k~~W~E~~~~fP~~~ 78 (113)
T PF05388_consen 46 EKISKYLNEPLKSLTSEAKALWDEMMLLFPDAV 78 (113)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHCcHHH
Confidence 347788999999999999999999887654443
No 28
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=30.93 E-value=42 Score=29.97 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCCCCccH-HHhhhhccCChhhhhhhHHHHHHH-HHHHHHhCCCCc
Q psy6707 133 YKMPEETP-DKGARWKAMSNAEKQPYYEEQSRL-SKLHMEKHPDYR 176 (257)
Q Consensus 133 l~n~eISK-iLGe~Wk~LS~eeK~pY~e~A~~l-Ke~H~k~yPdYK 176 (257)
++...||+ .||.-|+.+|+++|+.|.+.-..+ ..-|....-+|.
T Consensus 68 ~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~ 113 (211)
T PRK15117 68 VQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYH 113 (211)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566766 799999999999999999877665 556766666664
No 29
>KOG0526|consensus
Probab=22.90 E-value=11 Score=38.98 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=35.2
Q ss_pred eeccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCC
Q psy6707 51 VFNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYS 101 (257)
Q Consensus 51 ~~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~ 101 (257)
-+.+.+++| -+.|+.|+ . |.+.++-|. .|+.||..+|+ .|-
T Consensus 558 gi~~~dv~kk~g~~wk~ms--~--k~~we~ka~-----~dk~ry~~em~-~yk 600 (615)
T KOG0526|consen 558 GISVGDVAKKAGEKWKQMS--A--KEEWEDKAA-----VDKQRYEDEMK-EYK 600 (615)
T ss_pred CchHHHHHHHHhHHHhhhc--c--cchhhHHHH-----HHHHHHHHHHH-hhc
Confidence 456788888 88999999 4 888999999 99999999998 663
No 30
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=22.70 E-value=92 Score=30.69 Aligned_cols=28 Identities=36% Similarity=0.357 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6707 12 LASESQQKQQMEIHRFHQEQFKRQQEHL 39 (257)
Q Consensus 12 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 39 (257)
|...+.|+|+-|..+|.+.+++.|.+|-
T Consensus 111 ~~a~e~qkq~eEa~kq~~~~qkqqeEqa 138 (387)
T COG3064 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQA 138 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888887777766654
No 31
>PF12336 SOXp: SOX transcription factor; InterPro: IPR022097 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: KKDK and LPG. This family is made up of SOX transcription factors. These are involved in upregulation of nestin, a neural promoter. ; PDB: 2LE4_A.
Probab=21.55 E-value=37 Score=26.96 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=3.7
Q ss_pred ccCCCCCCCCCCCCcccc
Q psy6707 177 YRPRPKRTCIVDGKKMRI 194 (257)
Q Consensus 177 Y~Prrk~k~~~~gkk~~~ 194 (257)
||||||.|-..+.-|..+
T Consensus 1 YRPRRKtKtLlKKdKy~l 18 (84)
T PF12336_consen 1 YRPRRKTKTLLKKDKYSL 18 (84)
T ss_dssp S-SS--S-----------
T ss_pred CCCcccchhhhccccccC
Confidence 899999987665444443
No 32
>KOG0871|consensus
Probab=21.53 E-value=97 Score=27.25 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccceeccccccc
Q psy6707 23 EIHRFHQEQFKRQQEHLLQQQHKIQELQVFNYSSLSS 59 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~sefSk 59 (257)
||++||||-|+++.+.+ .|+|. ....-+.+++++
T Consensus 118 EL~~qQqeLf~~ARar~-~~~~~--sv~~p~~~~~~~ 151 (156)
T KOG0871|consen 118 ELLRQQQELFAKARARL-MQQAA--SVAQPVAAENSG 151 (156)
T ss_pred HHHHHHHHHHHHHHHHH-Hhccc--cccCCccccccC
Confidence 78999999888888655 33332 233334555555
Done!