Query psy6707
Match_columns 257
No_of_seqs 227 out of 841
Neff 4.3
Searched_HMMs 29240
Date Sat Aug 17 00:58:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i11_A Transcription factor SO 99.9 5.3E-25 1.8E-29 164.6 1.1 73 110-184 2-81 (81)
2 1j46_A SRY, sex-determining re 99.9 5.3E-24 1.8E-28 161.0 3.5 76 109-186 1-83 (85)
3 3u2b_C Transcription factor SO 99.9 2.9E-24 9.9E-29 159.1 1.9 72 111-184 1-79 (79)
4 1hry_A Human SRY; DNA, DNA-bin 99.9 6.3E-24 2.2E-28 156.5 3.0 69 109-179 1-76 (76)
5 3f27_D Transcription factor SO 99.9 4.1E-24 1.4E-28 159.9 1.7 74 109-184 3-83 (83)
6 4euw_A Transcription factor SO 99.9 6.4E-24 2.2E-28 167.6 1.8 81 102-184 19-106 (106)
7 2e6o_A HMG box-containing prot 99.9 2.4E-23 8.1E-28 158.3 2.8 71 105-177 10-87 (87)
8 1gt0_D Transcription factor SO 99.9 3.2E-23 1.1E-27 154.4 2.7 72 111-184 1-79 (80)
9 2yrq_A High mobility group pro 99.9 2.1E-25 7.3E-30 187.5 -11.0 117 52-178 43-172 (173)
10 1wz6_A HMG-box transcription f 99.9 9.5E-23 3.3E-27 152.7 2.9 73 107-181 2-81 (82)
11 2lef_A LEF-1 HMG, protein (lym 99.8 2.5E-22 8.5E-27 151.8 3.1 72 111-184 1-79 (86)
12 1k99_A Upstream binding factor 99.8 1.9E-22 6.4E-27 157.4 2.1 77 104-182 2-92 (99)
13 2gzk_A Sex-determining region 99.8 1.9E-24 6.4E-29 178.9 -11.2 115 52-176 30-157 (159)
14 2gzk_A Sex-determining region 99.8 9.7E-21 3.3E-25 156.6 5.5 101 110-212 2-111 (159)
15 1hme_A High mobility group pro 99.8 9E-21 3.1E-25 139.9 1.4 69 107-177 1-76 (77)
16 2crj_A SWI/SNF-related matrix- 99.8 4E-21 1.4E-25 147.3 -1.4 73 107-181 2-81 (92)
17 2co9_A Thymus high mobility gr 99.8 5.6E-21 1.9E-25 149.4 -0.9 78 104-183 9-93 (102)
18 4a3n_A Transcription factor SO 99.8 2.2E-20 7.5E-25 135.2 0.0 64 111-176 1-71 (71)
19 1aab_A High mobility group pro 99.8 1.7E-19 6E-24 135.2 4.3 68 107-176 2-78 (83)
20 2yrq_A High mobility group pro 99.8 2.2E-19 7.7E-24 150.7 4.6 106 105-212 8-124 (173)
21 2eqz_A High mobility group pro 99.8 8.5E-20 2.9E-24 138.1 0.9 73 102-176 5-86 (86)
22 2lhj_A High mobility group pro 99.8 1.1E-19 3.7E-24 140.5 1.2 72 104-177 14-94 (97)
23 3tmm_A Transcription factor A, 99.7 2.2E-22 7.5E-27 178.5 -16.4 117 52-178 67-213 (238)
24 3tq6_A Transcription factor A, 99.7 2.6E-22 8.9E-27 175.6 -16.0 117 52-178 35-181 (214)
25 1cg7_A Protein (NON histone pr 99.7 8.1E-20 2.8E-24 140.5 -2.0 72 104-177 12-90 (93)
26 2cs1_A PMS1 protein homolog 1; 99.7 1.7E-19 5.9E-24 138.2 -1.1 72 107-180 2-80 (92)
27 1wgf_A Upstream binding factor 99.7 3.5E-19 1.2E-23 136.2 -0.7 69 105-175 13-88 (90)
28 1v64_A Nucleolar transcription 99.7 1.1E-18 3.7E-23 138.5 -1.0 71 104-176 8-82 (108)
29 1wxl_A Single-strand recogniti 99.7 1.7E-18 5.9E-23 127.1 -0.0 63 110-176 1-70 (73)
30 3nm9_A HMG-D, high mobility gr 99.7 2.5E-18 8.7E-23 126.2 -2.3 63 110-176 1-70 (73)
31 1ckt_A High mobility group 1 p 99.6 1.4E-17 5E-22 120.7 1.0 62 112-175 1-71 (71)
32 2cto_A Novel protein; high mob 99.6 4.3E-17 1.5E-21 127.3 3.7 65 106-172 4-76 (93)
33 2d7l_A WD repeat and HMG-box D 99.6 6.3E-18 2.2E-22 128.4 -2.3 69 109-182 2-78 (81)
34 3fgh_A Transcription factor A, 99.6 2.6E-17 8.8E-22 118.8 -0.7 63 111-175 1-66 (67)
35 1v63_A Nucleolar transcription 99.6 3.3E-17 1.1E-21 128.5 -0.6 68 107-176 3-75 (101)
36 3tmm_A Transcription factor A, 99.6 9.4E-18 3.2E-22 148.8 -7.8 100 106-207 35-164 (238)
37 3tq6_A Transcription factor A, 99.6 2.2E-17 7.4E-22 144.4 -7.0 99 108-208 5-133 (214)
38 2yuk_A Myeloid/lymphoid or mix 99.5 6.5E-17 2.2E-21 126.0 -5.5 61 105-171 15-84 (90)
39 1l8y_A Upstream binding factor 99.5 2.3E-15 7.9E-20 117.6 0.6 65 111-177 3-73 (91)
40 1l8y_A Upstream binding factor 94.5 0.00014 4.8E-09 56.5 -9.5 43 53-103 30-74 (91)
41 1aab_A High mobility group pro 91.7 0.0022 7.5E-08 47.2 -6.4 44 52-103 35-80 (83)
42 1ckt_A High mobility group 1 p 91.0 0.0018 6.2E-08 46.0 -7.2 39 52-97 29-69 (71)
43 1wgf_A Upstream binding factor 89.4 0.0064 2.2E-07 45.7 -5.7 42 52-100 46-89 (90)
44 2lef_A LEF-1 HMG, protein (lym 86.2 0.0044 1.5E-07 45.9 -8.3 42 52-101 28-71 (86)
45 2lhj_A High mobility group pro 85.5 0.01 3.5E-07 45.0 -6.7 39 52-97 50-90 (97)
46 1v63_A Nucleolar transcription 85.0 0.0017 5.8E-08 50.3 -11.5 44 49-100 29-74 (101)
47 3fgh_A Transcription factor A, 77.9 0.0035 1.2E-07 44.3 -11.1 38 53-97 25-64 (67)
48 1k99_A Upstream binding factor 77.7 2.4 8.1E-05 32.1 4.1 33 180-212 1-33 (99)
49 2cs1_A PMS1 protein homolog 1; 77.2 0.015 5.1E-07 43.7 -8.4 42 52-101 33-76 (92)
50 2d7l_A WD repeat and HMG-box D 74.6 0.13 4.6E-06 38.2 -3.7 27 53-81 33-61 (81)
51 2cto_A Novel protein; high mob 73.0 0.037 1.3E-06 42.6 -7.3 40 51-97 33-77 (93)
52 2eqz_A High mobility group pro 72.7 4 0.00014 29.7 4.1 33 180-212 6-38 (86)
53 1wz6_A HMG-box transcription f 70.5 0.047 1.6E-06 39.9 -7.0 41 52-100 33-75 (82)
54 1gt0_D Transcription factor SO 69.2 0.032 1.1E-06 40.5 -8.1 42 52-101 28-71 (80)
55 2co9_A Thymus high mobility gr 68.8 4.7 0.00016 30.5 3.8 32 181-212 9-40 (102)
56 4euw_A Transcription factor SO 65.9 0.032 1.1E-06 43.2 -9.1 41 52-100 55-97 (106)
57 2e6o_A HMG box-containing prot 52.1 13 0.00043 27.1 3.5 32 181-212 9-40 (87)
58 1cg7_A Protein (NON histone pr 43.1 9.3 0.00032 28.2 1.5 28 184-211 15-42 (93)
59 1hme_A High mobility group pro 42.7 22 0.00075 24.9 3.4 28 185-212 2-29 (77)
60 1v64_A Nucleolar transcription 37.2 21 0.00072 27.3 2.7 29 181-209 8-37 (108)
61 2crj_A SWI/SNF-related matrix- 36.0 34 0.0011 25.0 3.6 28 185-212 3-30 (92)
62 3nm9_A HMG-D, high mobility gr 35.3 33 0.0011 23.9 3.3 25 188-212 2-26 (73)
63 2qgu_A Probable signal peptide 32.2 31 0.0011 29.4 3.2 43 134-176 73-117 (211)
64 1wxl_A Single-strand recogniti 32.1 41 0.0014 23.3 3.4 25 188-212 2-26 (73)
65 1hry_A Human SRY; DNA, DNA-bin 26.9 54 0.0018 22.7 3.2 25 188-212 3-27 (76)
66 1j46_A SRY, sex-determining re 23.5 73 0.0025 22.7 3.5 26 187-212 2-27 (85)
No 1
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=5.3e-25 Score=164.63 Aligned_cols=73 Identities=51% Similarity=0.843 Sum_probs=60.2
Q ss_pred CCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCCC
Q psy6707 110 PHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPK 182 (257)
Q Consensus 110 P~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prrk 182 (257)
+++||||+|| ||||++++|. .++++|||++||++|+.||+++|++|.++|++++++|.++||+|+|+|+++
T Consensus 2 ~~~pkRP~na--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~ 79 (81)
T 1i11_A 2 SPHIKRPMNA--FMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 79 (81)
T ss_dssp -CCSCCSCCH--HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-------
T ss_pred cCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCC
Confidence 5899999999 9999999985 277899999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy6707 183 RT 184 (257)
Q Consensus 183 ~k 184 (257)
+|
T Consensus 80 ~~ 81 (81)
T 1i11_A 80 RT 81 (81)
T ss_dssp --
T ss_pred CC
Confidence 75
No 2
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.88 E-value=5.3e-24 Score=160.98 Aligned_cols=76 Identities=30% Similarity=0.609 Sum_probs=71.1
Q ss_pred CCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCC
Q psy6707 109 SPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRP 181 (257)
Q Consensus 109 dP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prr 181 (257)
.|++||||+|| ||||++++|. .++++|||++||++|+.||+++|++|.++|++++++|.++||+|+|+||+
T Consensus 1 ~p~~pKRP~~a--f~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr 78 (85)
T 1j46_A 1 MQDRVKRPMNA--FIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR 78 (85)
T ss_dssp CCCCCCCCCCH--HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCcCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 48999999999 9999999994 27889999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy6707 182 KRTCI 186 (257)
Q Consensus 182 k~k~~ 186 (257)
+++..
T Consensus 79 ~~~~~ 83 (85)
T 1j46_A 79 KAKML 83 (85)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 87654
No 3
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=2.9e-24 Score=159.14 Aligned_cols=72 Identities=33% Similarity=0.591 Sum_probs=65.6
Q ss_pred CCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCCCC
Q psy6707 111 HHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183 (257)
Q Consensus 111 ~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prrk~ 183 (257)
+|||||+|| ||||+++.|. .++++|||++||++|+.|++++|++|.++|++++++|.++||+|+|+|+++.
T Consensus 1 G~iKRP~na--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~~ 78 (79)
T 3u2b_C 1 GHIKRPMNA--FMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKV 78 (79)
T ss_dssp CCCCCCCCH--HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC--
T ss_pred CCCCCCCCH--HHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCC
Confidence 589999999 9999999884 2678999999999999999999999999999999999999999999999875
Q ss_pred C
Q psy6707 184 T 184 (257)
Q Consensus 184 k 184 (257)
+
T Consensus 79 k 79 (79)
T 3u2b_C 79 K 79 (79)
T ss_dssp -
T ss_pred C
Confidence 4
No 4
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.88 E-value=6.3e-24 Score=156.53 Aligned_cols=69 Identities=30% Similarity=0.632 Sum_probs=63.8
Q ss_pred CCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccC
Q psy6707 109 SPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 179 (257)
Q Consensus 109 dP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~P 179 (257)
||++||||+|| ||||++++|. .++++|||++||++|+.||+++|++|.++|++++++|.++||+|+|+|
T Consensus 1 dp~~pkrP~~a--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 1 VQDRVKRPMNA--FIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp --CCCCCCCCH--HHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred CcCCCCCCCCH--HHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 79999999999 9999999984 278999999999999999999999999999999999999999999998
No 5
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.88 E-value=4.1e-24 Score=159.89 Aligned_cols=74 Identities=32% Similarity=0.615 Sum_probs=64.4
Q ss_pred CCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCC
Q psy6707 109 SPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRP 181 (257)
Q Consensus 109 dP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prr 181 (257)
++++||||+|| ||||+++.|. .++++|||++||++|+.|++++|++|.++|++++++|.++||+|+|+|++
T Consensus 3 ~~~~pKrP~~a--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~ 80 (83)
T 3f27_D 3 FTSRIRRPMNA--FMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRR 80 (83)
T ss_dssp ----CCCCCCH--HHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCcc
Confidence 57899999999 9999999984 27789999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy6707 182 KRT 184 (257)
Q Consensus 182 k~k 184 (257)
+++
T Consensus 81 kk~ 83 (83)
T 3f27_D 81 RKQ 83 (83)
T ss_dssp ---
T ss_pred CCC
Confidence 863
No 6
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.88 E-value=6.4e-24 Score=167.57 Aligned_cols=81 Identities=27% Similarity=0.538 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy6707 102 PHDKNMYSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 174 (257)
Q Consensus 102 P~~k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPd 174 (257)
+-....++|++||||+|| ||||+++.|.. ++++|||++||++|+.|++++|++|.++|++++++|.++||+
T Consensus 19 ~~~~~~k~~~~pKRP~na--f~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 96 (106)
T 4euw_A 19 LYFQSSKNKPHVKRPMNA--FMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPD 96 (106)
T ss_dssp ---------CCCCCCCCH--HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhhccCCCCcCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334467999999999999 99999999852 778999999999999999999999999999999999999999
Q ss_pred CcccCCCCCC
Q psy6707 175 YRYRPRPKRT 184 (257)
Q Consensus 175 YKY~Prrk~k 184 (257)
|+|+|++|++
T Consensus 97 Yky~PrrkKs 106 (106)
T 4euw_A 97 YKYQPRRRKS 106 (106)
T ss_dssp CCC-------
T ss_pred cCcCCCCCCC
Confidence 9999998863
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-23 Score=158.26 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcc
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 177 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY 177 (257)
++.+||++||||+|| ||||++++|. .+++.|||++||++|+.|++++|++|.++|++++++|.++||+|+|
T Consensus 10 ~~~kdp~~pKrP~~a--f~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 10 VSATSPNKCKRPMNA--FMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp CCCCCCSSCCCCCCH--HHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 467899999999999 9999999995 2788999999999999999999999999999999999999999998
No 8
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.86 E-value=3.2e-23 Score=154.36 Aligned_cols=72 Identities=39% Similarity=0.736 Sum_probs=67.8
Q ss_pred CCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCCCC
Q psy6707 111 HHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183 (257)
Q Consensus 111 ~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prrk~ 183 (257)
++||||+|| ||||+++.|.. ++++|||++||++|+.||+++|++|.++|++++++|.++||+|+|+|++++
T Consensus 1 ~~pkrP~~a--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~ 78 (80)
T 1gt0_D 1 DRVKRPMNA--FMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 78 (80)
T ss_dssp CCCCCCCCH--HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred CcCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCC
Confidence 589999999 99999998842 678999999999999999999999999999999999999999999999887
Q ss_pred C
Q psy6707 184 T 184 (257)
Q Consensus 184 k 184 (257)
+
T Consensus 79 k 79 (80)
T 1gt0_D 79 K 79 (80)
T ss_dssp C
T ss_pred C
Confidence 6
No 9
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-25 Score=187.46 Aligned_cols=117 Identities=24% Similarity=0.350 Sum_probs=107.2
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCCCC----CCCCCCCCCCCCCCCccchhhh
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYSPH----DKNMYSPHHDKSEEQDLLMSVW 125 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~P~----~k~~kdP~~pKRP~nAnaFmlF 125 (257)
++|+++|+ ++.|.+|+ ..||.+|.++|. .|+.+|..++. .|.+. .++.+||++||||+|| ||||
T Consensus 43 ~~~~eisk~lg~~Wk~ls--~~eK~~y~~~A~-----~~k~~y~~e~~-~y~~~~~~~kk~~kdp~~pKrP~sa--f~lf 112 (173)
T 2yrq_A 43 VNFSEFSKKCSERWKTMS--AKEKGKFEDMAK-----ADKARYEREMK-TYIPPKGETKKKFKDPNAPKRPPSA--FFLF 112 (173)
T ss_dssp CCHHHHHHHHHHHHHHSC--HHHHHHHHHHHH-----HHHHHTHHHHH-HCCCCCCCSSCSCCCSSSCCCCCCH--HHHH
T ss_pred CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHH-----HHHHHHHHHhh-hhhhhhhhhcccccCCccccCcccH--HHHH
Confidence 68999999 99999999 999999999999 89999999988 77654 3456899999999999 9999
Q ss_pred cccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCccc
Q psy6707 126 GAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178 (257)
Q Consensus 126 ~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~ 178 (257)
++++|.. +++.||+++||++|+.||+++|++|.++|+.++++|.+++++|++.
T Consensus 113 ~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 113 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999842 7889999999999999999999999999999999999999999864
No 10
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.85 E-value=9.5e-23 Score=152.67 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccC
Q psy6707 107 MYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 179 (257)
Q Consensus 107 ~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~P 179 (257)
..||++||||+|| ||||++++|. .+++.|||++||++|+.||+++|++|.++|++++++|.++||+|+|+|
T Consensus 2 ~~~~~~pkrP~~a--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 2 SSGSSGARRPMNA--FLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp CSSCCCSCCCCCH--HHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 3689999999999 9999999984 278999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy6707 180 RP 181 (257)
Q Consensus 180 rr 181 (257)
+|
T Consensus 80 ~~ 81 (82)
T 1wz6_A 80 SS 81 (82)
T ss_dssp TC
T ss_pred CC
Confidence 87
No 11
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=2.5e-22 Score=151.85 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=66.6
Q ss_pred CCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCCCC
Q psy6707 111 HHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183 (257)
Q Consensus 111 ~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prrk~ 183 (257)
.+||||+|| ||||+++.|. .++++|||++||++|++||+++|++|.++|+.++++|.++||+|+|+|++++
T Consensus 1 ~~pKRP~na--f~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~~ 78 (86)
T 2lef_A 1 MHIKKPLNA--FMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 78 (86)
T ss_dssp CCCCCCCCH--HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTT
T ss_pred CCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC
Confidence 379999999 9999999984 2788999999999999999999999999999999999999999999998654
Q ss_pred C
Q psy6707 184 T 184 (257)
Q Consensus 184 k 184 (257)
+
T Consensus 79 ~ 79 (86)
T 2lef_A 79 K 79 (86)
T ss_dssp S
T ss_pred C
Confidence 3
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.84 E-value=1.9e-22 Score=157.43 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHH-------HH
Q psy6707 104 DKNMYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKL-------HM 169 (257)
Q Consensus 104 ~k~~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~-------H~ 169 (257)
+|+.+||++||||+|| ||||+++.|. .++++|||++||++|+.||+++|++|.++|++++++ |.
T Consensus 2 kkk~kdp~~PKRP~sa--f~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~ 79 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTP--YFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFR 79 (99)
T ss_dssp CCCCSSSSSCCCSCCH--HHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999 9999999984 278999999999999999999999999999999999 88
Q ss_pred HhCCCCcccCCCC
Q psy6707 170 EKHPDYRYRPRPK 182 (257)
Q Consensus 170 k~yPdYKY~Prrk 182 (257)
..||+|+|+|++-
T Consensus 80 ~~~P~~~~~~~~~ 92 (99)
T 1k99_A 80 EDHPDLIQNAKKL 92 (99)
T ss_dssp GCCCCCSCCCCC-
T ss_pred HHCCCccCCCccc
Confidence 9999999999863
No 13
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.84 E-value=1.9e-24 Score=178.95 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=104.8
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCCCC----CCCCCCCCCCCCCCCccchhhh
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYSPH----DKNMYSPHHDKSEEQDLLMSVW 125 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~P~----~k~~kdP~~pKRP~nAnaFmlF 125 (257)
++++|+|+ ++.|++|+ ..+|.+|.++|. .++.+|..++. .|.+. .++.+||++||||+|| ||||
T Consensus 30 ~~~~eisk~lg~~Wk~ls--~~eK~~y~~~A~-----~~k~~y~~~~~-~y~~~k~~~kk~~kdp~~pKrp~sa--y~lf 99 (159)
T 2gzk_A 30 MRNSEISKQLGYQWKMLT--EAEKWPFFQEAQ-----KLQAMHREKYP-NYKYRKGETKKKFKDPNAPKRPPSA--FFLF 99 (159)
T ss_dssp CCHHHHHHHHHHHHHHSC--HHHHHHHHHHHH-----HHHHHHHHHCS-SCSCCCCCCGGGSCCTTCCCCCCCH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhh--HHHhccHHHHHH-----HHHHHHHHHhh-ccccccccccccccccccccccccc--cchh
Confidence 78999999 99999999 999999999999 89999988887 67654 2246899999999999 9999
Q ss_pred cccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 126 GAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 126 ~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
++++|.. ++++||+++||++|+.||+++|++|.++|+.++++|.+++++|+
T Consensus 100 ~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 100 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999852 77899999999999999999999999999999999999999996
No 14
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.81 E-value=9.7e-21 Score=156.63 Aligned_cols=101 Identities=23% Similarity=0.416 Sum_probs=91.1
Q ss_pred CCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCCCC
Q psy6707 110 PHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPK 182 (257)
Q Consensus 110 P~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Prrk 182 (257)
|++||||+|| ||||+.+.|. .++++|||++||++|+.||+++|.+|.++|+.++++|..+||+|+|.|+++
T Consensus 2 ~~~~Krp~~a--f~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~ 79 (159)
T 2gzk_A 2 QDRVKRPMNA--FIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGET 79 (159)
T ss_dssp TTCCCCCCCH--HHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCC
T ss_pred cCCCCCCCcH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 7899999999 9999998773 378999999999999999999999999999999999999999999999865
Q ss_pred CC--CCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 183 RT--CIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 183 ~k--~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
++ .+.+.++.+.++|..||...|.++....
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~ 111 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 111 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhC
Confidence 54 4566789999999999999999887763
No 15
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.79 E-value=9e-21 Score=139.91 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcc
Q psy6707 107 MYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 177 (257)
Q Consensus 107 ~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY 177 (257)
++||++||||+|| ||||+++.|. .++++|||++||++|+.||+++|++|.++|+.++++|.+++|+|+.
T Consensus 1 kkdp~~pKrP~sa--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSA--FFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCT--THHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999 9999999984 2778999999999999999999999999999999999999999974
No 16
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.79 E-value=4e-21 Score=147.31 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccC
Q psy6707 107 MYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 179 (257)
Q Consensus 107 ~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~P 179 (257)
.+||++||||+|| ||||++++|. .+++.|||++||++|+.|++++|++|.++|++++++|.+++|+|+++|
T Consensus 2 ~kdp~~pKrP~~a--f~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTG--YVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCH--HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 5899999999999 9999999994 278899999999999999999999999999999999999999999887
Q ss_pred CC
Q psy6707 180 RP 181 (257)
Q Consensus 180 rr 181 (257)
..
T Consensus 80 ~~ 81 (92)
T 2crj_A 80 AY 81 (92)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 17
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=5.6e-21 Score=149.38 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 104 DKNMYSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 104 ~k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
+++.+||++||||+|| ||||++++|.. +++.|||++||++|+.|++++|++|.++|++++++|.+++|+|+
T Consensus 9 kk~~kdp~~pKrP~sa--y~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSA--YALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSSCCCCCSCCCCCCH--HHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999 99999999842 77899999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy6707 177 YRPRPKR 183 (257)
Q Consensus 177 Y~Prrk~ 183 (257)
|++..+.
T Consensus 87 ~~~~~~~ 93 (102)
T 2co9_A 87 ASLVSKS 93 (102)
T ss_dssp HHHTSSC
T ss_pred hhccccc
Confidence 9876543
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.77 E-value=2.2e-20 Score=135.16 Aligned_cols=64 Identities=31% Similarity=0.563 Sum_probs=54.3
Q ss_pred CCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 111 HHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 111 ~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
++||||+|| ||||+++.|. .++++|||++||++|+.||+++|++|.++|++++++|.++||+||
T Consensus 1 gk~krP~~a--f~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNA--FMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCH--HHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 479999999 9999999884 267899999999999999999999999999999999999999996
No 19
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.77 E-value=1.7e-19 Score=135.15 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCccchhhhcccCCCC-------CC--CCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 107 MYSPHHDKSEEQDLLMSVWGAGGESP-------YK--MPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 107 ~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~--n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
++||++||||+|| ||||++++|.. ++ +.|||++||++|+.||+++|++|.++|++++++|.+++++|+
T Consensus 2 kkdp~~PKrP~sa--y~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 78 (83)
T 1aab_A 2 KGDPKKPRGKMSS--YAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 78 (83)
T ss_dssp CCCTTCCCCCCCH--HHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999 99999999842 44 499999999999999999999999999999999999999996
No 20
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-19 Score=150.75 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=92.0
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCCC---------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGESP---------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 175 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~~---------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdY 175 (257)
+..+||++||||+|| ||||+++.|.. +++.|||++||++|+.||+++|++|.++|+.++++|.+++++|
T Consensus 8 ~~k~dp~~PKrp~sa--y~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSS--YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp SSSCCSSSCCCCCCH--HHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 356899999999999 99999999842 4779999999999999999999999999999999999999999
Q ss_pred cccCC--CCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 176 RYRPR--PKRTCIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 176 KY~Pr--rk~k~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
+.... +++....+.++.+.++|+.|++..|.++....
T Consensus 86 ~~~~~~~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~ 124 (173)
T 2yrq_A 86 IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 124 (173)
T ss_dssp CCCCCCSSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhcccccCCccccCcccHHHHHHHHHHHHHHHHC
Confidence 75432 23334667889999999999999999887764
No 21
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-20 Score=138.13 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhcccCCCC-------CCC--CCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhC
Q psy6707 102 PHDKNMYSPHHDKSEEQDLLMSVWGAGGESP-------YKM--PEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKH 172 (257)
Q Consensus 102 P~~k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n--~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~y 172 (257)
..++..+||++||||+|| ||||++++|.. +++ .|||++||++|+.|++++|++|.++|+.++++|.+++
T Consensus 5 ~~~~~~kdp~~PKrP~sa--y~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 82 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSA--YAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREM 82 (86)
T ss_dssp CSSCSSCCSSSCCCCCCH--HHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcH--HHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567999999999999 99999999852 443 8999999999999999999999999999999999999
Q ss_pred CCCc
Q psy6707 173 PDYR 176 (257)
Q Consensus 173 PdYK 176 (257)
++|+
T Consensus 83 ~~Y~ 86 (86)
T 2eqz_A 83 KDYG 86 (86)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 9885
No 22
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.75 E-value=1.1e-19 Score=140.52 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCCCccchhhhcccCCCC-------CC--CCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCC
Q psy6707 104 DKNMYSPHHDKSEEQDLLMSVWGAGGESP-------YK--MPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPD 174 (257)
Q Consensus 104 ~k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~--n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPd 174 (257)
.++.+||++||||+|| ||||++++|.. ++ ++|||++||++|+.||+++|++|.++|++++++|.+++++
T Consensus 14 ~k~~kdp~~pKrP~sa--y~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 91 (97)
T 2lhj_A 14 RKAKKDPNAPKRALSS--YMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAE 91 (97)
T ss_dssp TCTTSCCCCCCCCCCS--STHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999 99999999963 56 8999999999999999999999999999999999999999
Q ss_pred Ccc
Q psy6707 175 YRY 177 (257)
Q Consensus 175 YKY 177 (257)
|+.
T Consensus 92 y~~ 94 (97)
T 2lhj_A 92 YAQ 94 (97)
T ss_dssp HHH
T ss_pred HHh
Confidence 964
No 23
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.2e-22 Score=178.53 Aligned_cols=117 Identities=13% Similarity=0.132 Sum_probs=104.4
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCC----CCC---------------------
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYS----PHD--------------------- 104 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~----P~~--------------------- 104 (257)
+.|+|||+ ++.|++|+ .+||.+|+++|. .++.+|..+|. .|. |..
T Consensus 67 ~~~~eisk~lge~Wk~Ls--~~EK~~y~~~A~-----~~k~~y~~e~~-~y~~~~~p~~~~~~~~~~~~k~~krk~~~kk 138 (238)
T 3tmm_A 67 AKTTELIRRIAQRWRELP--DSKKKIYQDAYR-----AEWQVYKEEIS-RFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK 138 (238)
T ss_dssp SCHHHHHHHHHHHHHHSC--HHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHH-----HHHHHHHHHHH-HHHhcCCHHHHHHHHHHHhhhhhhhhcccch
Confidence 35899999 99999999 999999999999 99999999887 562 321
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCCCC---CCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCccc
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGESPY---KMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~~l---~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~ 178 (257)
+..+||++||||+|| |||||+++|..+ +..||+|+||++|+.|++++|++|.++|++++++|.+++++|+..
T Consensus 139 k~~kdp~~PKrP~sa--y~lF~~e~r~~~k~~~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 139 KELTLLGKPKRPRSA--YNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHHHTTCCCCCCCH--HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234799999999999 999999999864 346899999999999999999999999999999999999999976
No 24
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.75 E-value=2.6e-22 Score=175.56 Aligned_cols=117 Identities=13% Similarity=0.132 Sum_probs=103.8
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCC----CCC---------------------
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYS----PHD--------------------- 104 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~----P~~--------------------- 104 (257)
+.|+|||+ ++.|++|+ .+||.+|+++|. .++.+|..+|. .|. |..
T Consensus 35 ~~~~eisk~lge~Wk~Ls--~~EK~~y~~~A~-----~~k~~y~~e~~-~y~~~~tp~q~~~~~~~~~~~~~krk~~kkk 106 (214)
T 3tq6_A 35 AKTTELIRRIAQRWRELP--DSKKKIYQDAYR-----AEWQVYKEEIS-RFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK 106 (214)
T ss_dssp SCHHHHHHHHHHHHHHSC--HHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccC--HHhhhHHHHHHH-----HHHHHHHHHhh-hhcccCCHHHHHHHHHHHHHHHhhhcchhhh
Confidence 45899999 99999999 999999999999 89999998887 562 321
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCCCC---CCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCccc
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGESPY---KMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~~l---~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~ 178 (257)
+..+||++||||+|| |||||++.|..+ +..||+++||++|++|++++|++|.++|++++++|.+++++|+..
T Consensus 107 k~~kdp~~PKrP~sa--y~lF~~e~r~~~k~~~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 107 KELTLLGKPKRPRSA--YNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHTTCCCCCCCH--HHHHHHHHTTTSSCSSHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccch--hhhhHHHHHHhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 224699999999999 999999999864 346999999999999999999999999999999999999999876
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.73 E-value=8.1e-20 Score=140.47 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=66.3
Q ss_pred CCCCCCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 104 DKNMYSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 104 ~k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
.++.+||++||||+|| ||||++++|.. ++++|||++||++|+.||+++|++|.++|+.++++|.+++++|+
T Consensus 12 ~k~~kdp~~pKrP~sa--f~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 12 TRKKKDPNAPKRALSA--YMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCSSCCCSCCCH--HHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999 99999999964 56799999999999999999999999999999999999999996
Q ss_pred c
Q psy6707 177 Y 177 (257)
Q Consensus 177 Y 177 (257)
.
T Consensus 90 ~ 90 (93)
T 1cg7_A 90 A 90 (93)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-19 Score=138.18 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccC
Q psy6707 107 MYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 179 (257)
Q Consensus 107 ~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~P 179 (257)
..+|++||||+|| ||||++++|. .+++.|||++||++|+.|++++|++|.++|++++++|.+++++|+++.
T Consensus 2 ~~~p~~pKrP~sa--y~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~ 79 (92)
T 2cs1_A 2 SSGSSGIKKPMSA--SALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE 79 (92)
T ss_dssp CCCCSSSCCCCCH--HHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999 9999999994 277899999999999999999999999999999999999999998774
Q ss_pred C
Q psy6707 180 R 180 (257)
Q Consensus 180 r 180 (257)
.
T Consensus 80 ~ 80 (92)
T 2cs1_A 80 S 80 (92)
T ss_dssp T
T ss_pred C
Confidence 3
No 27
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.72 E-value=3.5e-19 Score=136.16 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 175 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdY 175 (257)
++.+||++||||+|| ||||++++|. .+++.|||++||++|+.|++++|++|.++|+.++++|.+++-.+
T Consensus 13 k~~kdp~~pKrP~sa--y~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 13 GGKGGSEKPKRPVSA--MFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp CCSSCCCCCCCCCCH--HHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred cCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999 9999999994 27889999999999999999999999999999999999887654
No 28
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.69 E-value=1.1e-18 Score=138.54 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=66.9
Q ss_pred CCCCCCCCCC-CCCCCccchhhhcccCCCC---CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 104 DKNMYSPHHD-KSEEQDLLMSVWGAGGESP---YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 104 ~k~~kdP~~p-KRP~nAnaFmlF~~e~R~~---l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
.++.+||++| |||+|| ||||++++|.. ++++||+++||++|+.|++++|++|.++|+.++++|.+++++|+
T Consensus 8 ~kk~kd~~~P~KrP~sa--y~lF~~e~r~~~k~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNS--YSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CSSCCTTTSCCCCCSSH--HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999 999999 99999999864 67899999999999999999999999999999999999999996
No 29
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.7e-18 Score=127.10 Aligned_cols=63 Identities=16% Similarity=0.346 Sum_probs=59.6
Q ss_pred CCCCCCCCCccchhhhcccCCC-------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 110 PHHDKSEEQDLLMSVWGAGGES-------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 110 P~~pKRP~nAnaFmlF~~e~R~-------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
|++||||+|| ||||+++.|. .++++||||+||++|+.| ++|++|.++|++++++|.+++++|+
T Consensus 1 P~~pKrP~sa--y~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~ 70 (73)
T 1wxl_A 1 SHMPKRATTA--FMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYK 70 (73)
T ss_dssp CCCCCCCCCH--HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGT
T ss_pred CccCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999 9999999984 278899999999999999 9999999999999999999999996
No 30
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.66 E-value=2.5e-18 Score=126.19 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=58.9
Q ss_pred CCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 110 PHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 110 P~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
+++||||+|| ||||++++|.. ++++|||++||++|+.|++ |++|.++|++++++|.+++++|+
T Consensus 1 s~~PKrP~sa--y~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~ 70 (73)
T 3nm9_A 1 SDKPKRPLSA--YALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFE 70 (73)
T ss_dssp CCCCCCCCCH--HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999 99999999852 7889999999999999997 99999999999999999999996
No 31
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.65 E-value=1.4e-17 Score=120.73 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=57.7
Q ss_pred CCCCCCCccchhhhcccCCC------C-CCC--CCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy6707 112 HDKSEEQDLLMSVWGAGGES------P-YKM--PEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 175 (257)
Q Consensus 112 ~pKRP~nAnaFmlF~~e~R~------~-l~n--~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdY 175 (257)
+||||+|| ||||+++.|. | +++ +|||++||++|+.||+++|++|.++|+.++++|.+++..|
T Consensus 1 kPKrP~sa--y~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSS--YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCH--HHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCH--HHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999 9999999984 2 565 9999999999999999999999999999999999999987
No 32
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-17 Score=127.32 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCccchhhhcccCCCC-----CCCCCccHHH---hhhhccCChhhhhhhHHHHHHHHHHHHHhC
Q psy6707 106 NMYSPHHDKSEEQDLLMSVWGAGGESP-----YKMPEETPDK---GARWKAMSNAEKQPYYEEQSRLSKLHMEKH 172 (257)
Q Consensus 106 ~~kdP~~pKRP~nAnaFmlF~~e~R~~-----l~n~eISKiL---Ge~Wk~LS~eeK~pY~e~A~~lKe~H~k~y 172 (257)
...++++||||+|| ||||++++|.. ++++||||+| |++|+.|+++||++|+++|+++|++|.++.
T Consensus 4 ~~~~~~~PKRP~sA--f~lF~~e~R~~ik~e~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 4 GSSGMPNRKASRNA--YYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCCSSCCH--HHHHHHTTHHHHHHHTCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 45789999999999 99999999974 7899999999 999999999999999999999999999886
No 33
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-18 Score=128.36 Aligned_cols=69 Identities=10% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCCCCCCCCccchhhhcccCCCC-------CC-CCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcccCC
Q psy6707 109 SPHHDKSEEQDLLMSVWGAGGESP-------YK-MPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPR 180 (257)
Q Consensus 109 dP~~pKRP~nAnaFmlF~~e~R~~-------l~-n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY~Pr 180 (257)
+|++||||+|| ||||+++.|.. ++ ++||||+||++|+.|++++|++|+++|+.+. ..++++|++++|
T Consensus 2 ~~~~PKRP~sa--y~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~---~~~~~e~kkRkr 76 (81)
T 2d7l_A 2 SSGSSGRPKTG--FQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET---ASEGTEAKKRKS 76 (81)
T ss_dssp CCCCSSCCCCH--HHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS---SSSCCCCGGGCC
T ss_pred CCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hhhhhhhhhccc
Confidence 78999999999 99999999852 76 8999999999999999999999999999985 456888887665
Q ss_pred CC
Q psy6707 181 PK 182 (257)
Q Consensus 181 rk 182 (257)
..
T Consensus 77 ~~ 78 (81)
T 2d7l_A 77 GP 78 (81)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 34
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.62 E-value=2.6e-17 Score=118.79 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCCCCCCCccchhhhcccCCCC---CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Q psy6707 111 HHDKSEEQDLLMSVWGAGGESP---YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 175 (257)
Q Consensus 111 ~~pKRP~nAnaFmlF~~e~R~~---l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdY 175 (257)
++||||+|| ||||+++.|.. .+.+||+++||++|+.||+++|.+|.++|++++++|.+++..|
T Consensus 1 g~PKrP~sa--y~~F~~~~r~~~k~~~p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSA--YNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCH--HHHHHHHHHHHHCSSSHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999 99999999964 3458999999999999999999999999999999999988776
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.61 E-value=3.3e-17 Score=128.46 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCccchhhhcccCCC--C---CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCc
Q psy6707 107 MYSPHHDKSEEQDLLMSVWGAGGES--P---YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176 (257)
Q Consensus 107 ~kdP~~pKRP~nAnaFmlF~~e~R~--~---l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYK 176 (257)
..+..+||||+|| ||||+++++. . ++++||+|+||++|+.|++++|++|.++|++++++|.+++++|+
T Consensus 3 s~~~~~PKrP~sa--y~lF~~e~~~~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 75 (101)
T 1v63_A 3 SGSSGPKKPPMNG--YQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWV 75 (101)
T ss_dssp CCCCSSCCCCSSS--HHHHHHHHHHHCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCH--HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999 9999999874 2 45579999999999999999999999999999999999999995
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.57 E-value=9.4e-18 Score=148.78 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=85.2
Q ss_pred CCCCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcc-
Q psy6707 106 NMYSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY- 177 (257)
Q Consensus 106 ~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY- 177 (257)
..+||++||||+|| ||||+++.|.. ++++||||+||++|+.|++++|.+|+++|+.++++|.+++++|+-
T Consensus 35 s~~~p~~PKrP~sa--y~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 112 (238)
T 3tmm_A 35 SSVLASCPKKPVSS--YLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 112 (238)
T ss_dssp CCHHHHSCCCCCCH--HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999999 99999999852 789999999999999999999999999999999999999999952
Q ss_pred -cCC---------------------CCCCCCCCCCcccchhhHHHHHHHHHH
Q psy6707 178 -RPR---------------------PKRTCIVDGKKMRISEYKTLMRQRRNE 207 (257)
Q Consensus 178 -~Pr---------------------rk~k~~~~gkk~~~s~y~~l~~~rr~E 207 (257)
.|- ++..++.+.++.+.++|+.||+..|.+
T Consensus 113 ~~p~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~r~~ 164 (238)
T 3tmm_A 113 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQE 164 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHHHHH
Confidence 221 111235678899999999999987643
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.56 E-value=2.2e-17 Score=144.39 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCccchhhhcccCCCC-------CCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcc--c
Q psy6707 108 YSPHHDKSEEQDLLMSVWGAGGESP-------YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY--R 178 (257)
Q Consensus 108 kdP~~pKRP~nAnaFmlF~~e~R~~-------l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY--~ 178 (257)
.+|++||||+|| ||||+++.|.. ++++|||++||++|+.||+++|.+|+++|..++++|.+++++|+- .
T Consensus 5 ~~p~~PKrP~sa--y~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~t 82 (214)
T 3tq6_A 5 VLASCPKKPVSS--YLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 82 (214)
T ss_dssp HHHHSCCCCCCH--HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 468899999999 99999999852 788999999999999999999999999999999999999999952 2
Q ss_pred CC---------------------CCCCCCCCCCcccchhhHHHHHHHHHHH
Q psy6707 179 PR---------------------PKRTCIVDGKKMRISEYKTLMRQRRNEM 208 (257)
Q Consensus 179 Pr---------------------rk~k~~~~gkk~~~s~y~~l~~~rr~E~ 208 (257)
|- ++..++.+.++.+.++|+.||+..|.++
T Consensus 83 p~q~~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e~r~~~ 133 (214)
T 3tq6_A 83 PSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEA 133 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHHHHHHhh
Confidence 31 1112356788999999999999876543
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.53 E-value=6.5e-17 Score=125.97 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCCCC-------CC--CCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHh
Q psy6707 105 KNMYSPHHDKSEEQDLLMSVWGAGGESP-------YK--MPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEK 171 (257)
Q Consensus 105 k~~kdP~~pKRP~nAnaFmlF~~e~R~~-------l~--n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~ 171 (257)
|..+|||+||||++| |||||+++|+. ++ ++||| ++|+.|++++|+||+++|+++|++|+.+
T Consensus 15 k~~kDpnaPKRp~sA--f~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVA--PVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSS--HHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccH--HHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 346899999999999 99999999976 34 56666 9999999999999999999999999864
No 39
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.50 E-value=2.3e-15 Score=117.61 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCCCCCCCccchhhhcccCCC------CCCCCCccHHHhhhhccCChhhhhhhHHHHHHHHHHHHHhCCCCcc
Q psy6707 111 HHDKSEEQDLLMSVWGAGGES------PYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 177 (257)
Q Consensus 111 ~~pKRP~nAnaFmlF~~e~R~------~l~n~eISKiLGe~Wk~LS~eeK~pY~e~A~~lKe~H~k~yPdYKY 177 (257)
+.||||++| ||||+++.|. +-+++||+|.||++|+.|++++|+||+++|+.+|++|.+++.+|+.
T Consensus 3 ~kPKrP~SA--y~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~ 73 (91)
T 1l8y_A 3 KLPESPKRA--EEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 73 (91)
T ss_dssp CCCCCCCHH--HHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 689999999 9999998884 2367999999999999999999999999999999999999999964
No 40
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=94.45 E-value=0.00014 Score=56.53 Aligned_cols=43 Identities=14% Similarity=0.001 Sum_probs=39.6
Q ss_pred ccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCCCC
Q psy6707 53 NYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYSPH 103 (257)
Q Consensus 53 n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~P~ 103 (257)
++++|++ +++|++|+ .++|.+|+++|. .|+.+|+.+|. .|.+.
T Consensus 30 ~~~evsK~lGe~Wk~ls--~~eK~pye~kA~-----~dK~rYekEm~-~Y~~~ 74 (91)
T 1l8y_A 30 DRVKALKAMEMTWNNME--KKEKLMWIKKAA-----EDQKRYERELS-EMRAP 74 (91)
T ss_dssp THHHHHHHHHHHHHTTG--GGHHHHHHHHHH-----HHHHHHHHHHH-TTSCG
T ss_pred CHHHHHHHHHHHHhcCC--HHHHHHHHHHHH-----HHHHHHHHHHH-HHHcc
Confidence 6799999 99999999 999999999999 99999999998 78553
No 41
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=91.72 E-value=0.0022 Score=47.22 Aligned_cols=44 Identities=36% Similarity=0.391 Sum_probs=39.5
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYSPH 103 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~P~ 103 (257)
++|+++|+ ++.|.+|+ ..+|.+|.++|. .++.+|..+|. .|.+.
T Consensus 35 ~~~~eisk~lg~~Wk~ls--~~eK~~y~~~A~-----~~k~~y~~e~~-~y~~~ 80 (83)
T 1aab_A 35 VNFSEFSKKCSERWKTMS--AKEKGKFEDMAK-----ADKARYEREMK-TYIPP 80 (83)
T ss_dssp CCSSSSHHHHHHHHTTSC--TTHHHHHHHHHH-----HHHHHHHHHTT-TCCCC
T ss_pred CcHHHHHHHHHHHHHhCC--HHHHHHHHHHHH-----HHHHHHHHHHH-HHhcc
Confidence 46899999 99999999 999999999999 99999999988 77553
No 42
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=91.02 E-value=0.0018 Score=46.04 Aligned_cols=39 Identities=36% Similarity=0.340 Sum_probs=34.9
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDK 97 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~ 97 (257)
++|+++|+ ++.|++|+ ..+|.+|.++|. .++.+|..+|.
T Consensus 29 ~~~~eisk~lg~~Wk~ls--~~eK~~y~~~A~-----~~k~~y~~e~~ 69 (71)
T 1ckt_A 29 VNFSEFSKKCSERWKTMS--AKEKGKFEDMAK-----ADKARYEREMK 69 (71)
T ss_dssp CCHHHHHHHHHHHHHTCC--TTTSHHHHHHHH-----HHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhhCC--HHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 46899999 99999999 999999999999 88888887775
No 43
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=89.44 E-value=0.0064 Score=45.69 Aligned_cols=42 Identities=14% Similarity=-0.030 Sum_probs=38.5
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMY 100 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y 100 (257)
++++++|+ ++.|..|+ ..+|.+|.++|. .++.+|..+|...|
T Consensus 46 ~~~~eisk~lg~~Wk~ls--~eeK~~Y~~~A~-----~~k~~y~~e~~~~~ 89 (90)
T 1wgf_A 46 LSESELTRLLARMWNDLS--EKKKAKYKAREA-----ALKAQSERKSGPSS 89 (90)
T ss_dssp SCHHHHHHHHHHHHHHSC--HHHHHHHHHHHH-----HHTTTTCCCCSSCC
T ss_pred CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHH-----HHHHHHHHHHHHhc
Confidence 68899999 99999999 999999999999 99999999998554
No 44
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=86.23 E-value=0.0044 Score=45.93 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=37.5
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYS 101 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~ 101 (257)
++++++|+ ++.|.+|+ ..+|.+|.++|. .++.+|..++. .|.
T Consensus 28 ~~~~eisk~lg~~Wk~ls--~eeK~~y~~~A~-----~~k~~y~~~~~-~Yk 71 (86)
T 2lef_A 28 KESAAINQILGRRWHALS--REEQAKYYELAR-----KERQLHMQLYP-GWS 71 (86)
T ss_dssp CCHHHHHHHHHHHHTTSC--HHHHHHHHHHHH-----HHHHHHHHHST-TCC
T ss_pred CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH-----HHHHHHHHHcc-ccc
Confidence 57889999 89999999 999999999999 89999988877 675
No 45
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=85.48 E-value=0.01 Score=45.04 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDK 97 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~ 97 (257)
++|+++|+ ++.|.+|+ ..+|.+|.++|. .++.+|..++.
T Consensus 50 ~~~~eisk~lg~~Wk~ls--~eeK~~Y~~~A~-----~~k~~y~~e~~ 90 (97)
T 2lhj_A 50 KDVAAIGKMIGAAWNALS--DEEKKPYERMSD-----EDRVRYEREKA 90 (97)
T ss_dssp TCSSHHHHHHHHTSSSSC--STTTSSSSHHHH-----HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC--HHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 45899999 99999999 999999999998 78888776654
No 46
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=84.97 E-value=0.0017 Score=50.30 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=39.0
Q ss_pred cceeccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCC
Q psy6707 49 LQVFNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMY 100 (257)
Q Consensus 49 ~~~~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y 100 (257)
+..++|.|+++ ++.|++|+ ..||.+|+++|. .|+.+|..+|. .|
T Consensus 29 ~~~~~~~eisK~lge~Wk~ls--~~eK~~Y~~~A~-----~~k~~Y~~e~~-~Y 74 (101)
T 1v63_A 29 LNHLPLKERMVEIGSRWQRIS--QSQKEHYKKLAE-----EQQRQYKVHLD-LW 74 (101)
T ss_dssp TTTSCHHHHHHHHHHHHTTSC--HHHHHHHHHHHH-----HHHHHHHHHHH-HH
T ss_pred CCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHH-----HHHHHHHHHHH-HH
Confidence 34568899999 99999999 999999999999 99999998887 55
No 47
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=77.93 E-value=0.0035 Score=44.33 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=33.0
Q ss_pred ccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccC
Q psy6707 53 NYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDK 97 (257)
Q Consensus 53 n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~ 97 (257)
|..++|+ ++.|++|+ ..+|.+|.++|. .|+.+|..+|.
T Consensus 25 ~p~ei~k~lg~~Wk~ls--~~eK~~y~~~A~-----~~k~~Y~~e~~ 64 (67)
T 3fgh_A 25 SPQEKLKTVKENWKNLS--DSEKELYIQHAK-----EDETRYHNEMK 64 (67)
T ss_dssp SHHHHHHHHHHHHHTCC--HHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCC--HHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3468888 99999999 999999999999 88888887765
No 48
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=77.67 E-value=2.4 Score=32.12 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 180 RPKRTCIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 180 rrk~k~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
++|++++.+.++.++++|+.|++..|.++....
T Consensus 1 ~kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~ 33 (99)
T 1k99_A 1 MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLH 33 (99)
T ss_dssp CCCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 456677888999999999999999999988753
No 49
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.20 E-value=0.015 Score=43.70 Aligned_cols=42 Identities=14% Similarity=0.000 Sum_probs=37.8
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYS 101 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~ 101 (257)
+.++++|+ ++.|+.|+ ..+|.+|.++|. .|+.+|..+|. .|.
T Consensus 33 ~~~~eisk~lg~~Wk~ls--~eeK~~y~~~A~-----~~k~~y~~e~~-~y~ 76 (92)
T 2cs1_A 33 TSLEDATLQIEELWKTLS--EEEKLKYEEKAT-----KDLERYNSQMK-RAI 76 (92)
T ss_dssp SCHHHHHHHHHHHHHSSC--HHHHHHHHHHHH-----TTTHHHHHHHH-HHT
T ss_pred CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH-----HHHHHHHHHHH-HHH
Confidence 46789999 99999999 999999999999 99999999987 663
No 50
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.63 E-value=0.13 Score=38.23 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=25.9
Q ss_pred ccccccc--cccccccCCCCCCCCccccccC
Q psy6707 53 NYSSLSS--SAGKMSMSSPGKEKTPEYNMHG 81 (257)
Q Consensus 53 n~sefSk--S~~~~sms~~~kek~~~~~~a~ 81 (257)
||+|+|+ ++.|++|+ ..+|.+|+++|.
T Consensus 33 ~~~eisK~lge~Wk~ls--~eeK~~y~~~A~ 61 (81)
T 2d7l_A 33 DEADIIKEGMIRFRVLS--TEERKVWANKAK 61 (81)
T ss_dssp SHHHHHHHHHHHHSSSC--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Confidence 6999999 99999999 999999999999
No 51
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.99 E-value=0.037 Score=42.64 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=34.4
Q ss_pred eeccccccc-----cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccC
Q psy6707 51 VFNYSSLSS-----SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDK 97 (257)
Q Consensus 51 ~~n~sefSk-----S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~ 97 (257)
.++|+++|+ ++.|++|+ ..||.+|+++|. .++..|...+.
T Consensus 33 ~~~~~eisK~l~~cGe~Wk~ls--~eEK~pYe~~A~-----~~K~~y~kd~~ 77 (93)
T 2cto_A 33 GLPVARVADAIPYCSSDWALLR--EEEKEKYAEMAR-----EWRAAQGKDPG 77 (93)
T ss_dssp TCCCSSHHHHTGGGHHHHHHSC--HHHHHHHHHHHH-----HHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHH-----HHHHHHhcccc
Confidence 367889888 78999999 999999999999 88888876653
No 52
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.72 E-value=4 Score=29.73 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 180 RPKRTCIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 180 rrk~k~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
+++++.+.+.++.++++|..|++..|.++....
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~ 38 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKN 38 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 345556788899999999999999999998774
No 53
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=70.46 E-value=0.047 Score=39.87 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=37.1
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMY 100 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y 100 (257)
++++++|+ ++.|..|+ ..+|.+|.++|. .++.+|..++. .|
T Consensus 33 ~~~~eisk~lg~~Wk~ls--~~eK~~y~~~A~-----~~k~~y~~~~~-~y 75 (82)
T 1wz6_A 33 LDNRGATKILADWWAVLD--PKEKQKYTDMAK-----EYKDAFMKANP-GY 75 (82)
T ss_dssp SCTTHHHHHHHHHHHTCC--HHHHHHHHHHHH-----HHHHHHCCSCS-SC
T ss_pred CCHHHHHHHHHHHHhhCC--HHHHHHHHHHHH-----HHHHHHHHHhH-Hh
Confidence 57889999 89999999 999999999999 89999988887 66
No 54
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=69.16 E-value=0.032 Score=40.53 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=37.5
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYS 101 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y~ 101 (257)
++++++|+ ++.|..|+ ..+|.+|.++|. .++.+|..++. .|.
T Consensus 28 ~~~~eisk~lg~~Wk~ls--~eeK~~y~~~A~-----~~k~~y~~~~~-~Yk 71 (80)
T 1gt0_D 28 MHNSEISKRLGAEWKLLS--ETEKRPFIDEAK-----RLRALHMKEHP-DYK 71 (80)
T ss_dssp SCHHHHHHHHHHHHTTSC--HHHHHHHHHHHH-----HHHHHHHHHCT-TCC
T ss_pred CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHH-----HHHHHHHHHCc-ccc
Confidence 57889999 99999999 999999999999 89999988887 663
No 55
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=68.77 E-value=4.7 Score=30.50 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 181 PKRTCIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 181 rk~k~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
++++.+.+.++.++++|+.|++..|.++....
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~ 40 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQN 40 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 34445788899999999999999999988764
No 56
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=65.92 E-value=0.032 Score=43.25 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=36.4
Q ss_pred eccccccc--cccccccCCCCCCCCccccccCCCCCCCCCCCCCcccCCCC
Q psy6707 52 FNYSSLSS--SAGKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMY 100 (257)
Q Consensus 52 ~n~sefSk--S~~~~sms~~~kek~~~~~~a~~~sph~dk~~y~~~~~~~y 100 (257)
+.+.++|+ ++.|.+|+ ..+|.+|+++|. .++.+|..++. .|
T Consensus 55 ~~~~eisk~lg~~Wk~ls--~eeK~~Y~~~A~-----~~k~~y~~e~~-~Y 97 (106)
T 4euw_A 55 LHNAELSKTLGKLWRLLN--ESEKRPFVEEAE-----RLRVQHKKDHP-DY 97 (106)
T ss_dssp SCHHHHHHHHHHHHTTCC--HHHHHHHHHHHH-----HHHHHHHHHCT-TC
T ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH-----HHHHHHHHHhh-hc
Confidence 56789999 99999999 999999999999 89999988876 55
No 57
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=52.09 E-value=13 Score=27.09 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 181 PKRTCIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 181 rk~k~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
++++++.+..+.+.++|+.|++..|.++....
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~ 40 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMY 40 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 34556777899999999999999999888764
No 58
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=43.13 E-value=9.3 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHhh
Q psy6707 184 TCIVDGKKMRISEYKTLMRQRRNEMRQL 211 (257)
Q Consensus 184 k~~~~gkk~~~s~y~~l~~~rr~E~r~~ 211 (257)
+.+.+.++.+.++|..|++..|.++...
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~ 42 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSE 42 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3467788999999999999988877654
No 59
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=42.68 E-value=22 Score=24.86 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=23.6
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 185 CIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 185 ~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
++.+.++.+.++|..|++..|.++....
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~ 29 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEH 29 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 4566788999999999999999887763
No 60
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=37.16 E-value=21 Score=27.32 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=22.9
Q ss_pred CCCCCCCCCC-cccchhhHHHHHHHHHHHH
Q psy6707 181 PKRTCIVDGK-KMRISEYKTLMRQRRNEMR 209 (257)
Q Consensus 181 rk~k~~~~gk-k~~~s~y~~l~~~rr~E~r 209 (257)
.++.+..+.+ +.+.++|..|++..|.++.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k 37 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK 37 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4445567777 8899999999999888764
No 61
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=35.98 E-value=34 Score=25.02 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=23.7
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 185 CIVDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 185 ~~~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
++.+.++.+.++|+.|++..|.++....
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~ 30 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRH 30 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 4566788999999999999999988764
No 62
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=35.26 E-value=33 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.5
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 188 DGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 188 ~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
+.++.+.++|+.|++..|.++....
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~ 26 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKREN 26 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHC
Confidence 4578899999999999999888764
No 63
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=32.20 E-value=31 Score=29.37 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCCCccH-HHhhhhccCChhhhhhhHHHHHHH-HHHHHHhCCCCc
Q psy6707 134 KMPEETP-DKGARWKAMSNAEKQPYYEEQSRL-SKLHMEKHPDYR 176 (257)
Q Consensus 134 ~n~eISK-iLGe~Wk~LS~eeK~pY~e~A~~l-Ke~H~k~yPdYK 176 (257)
+...||+ .||.-|+.+|+++++.|.+.-..+ ..-|...+-.|.
T Consensus 73 D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 73 DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445554 579999999999999999866554 566766555453
No 64
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=32.08 E-value=41 Score=23.34 Aligned_cols=25 Identities=8% Similarity=0.132 Sum_probs=21.4
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 188 DGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 188 ~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
+.++.+.++|..|++..|.++....
T Consensus 2 ~~pKrP~say~lf~~~~r~~~~~~~ 26 (73)
T 1wxl_A 2 HMPKRATTAFMLWLNDTRESIKREN 26 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHC
Confidence 4578899999999999999988764
No 65
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=26.90 E-value=54 Score=22.72 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 188 DGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 188 ~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
+..+.+.++|+.+++..|.++....
T Consensus 3 ~~pkrP~~af~lf~~~~r~~~~~~~ 27 (76)
T 1hry_A 3 DRVKRPMNAFIVWSRDQRRKMALEN 27 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 4578899999999999999988764
No 66
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=23.53 E-value=73 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCCCcccchhhHHHHHHHHHHHHhhh
Q psy6707 187 VDGKKMRISEYKTLMRQRRNEMRQLW 212 (257)
Q Consensus 187 ~~gkk~~~s~y~~l~~~rr~E~r~~w 212 (257)
.+..+.+.++|+.|++..|.++....
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~ 27 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALEN 27 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHS
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHC
Confidence 34578899999999999999888764
Done!