RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6707
         (257 letters)



>gnl|CDD|238684 cd01388, SOX-TCF_HMG-box, SOX-TCF_HMG-box, class I member of the
           HMG-box superfamily of DNA-binding proteins. These
           proteins contain a single HMG box, and bind the minor
           groove of DNA in a highly sequence-specific manner.
           Members include SRY and its homologs in insects and
           vertebrates, and transcription factor-like proteins,
           TCF-1, -3, -4, and LEF-1. They appear to bind the minor
           groove of the A/T C A A A G/C-motif.
          Length = 72

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 9/54 (16%)

Query: 134 KMPEETPDK---------GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYR 178
           K+ +E P K         G RWKA+SN EKQPYYEE  +L +LHM+ +PDY++R
Sbjct: 19  KVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72


>gnl|CDD|189580 pfam00505, HMG_box, HMG (high mobility group) box. 
          Length = 69

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176
           G +WK +S  EK+PY E+  +    + + +P Y+
Sbjct: 36  GEKWKNLSEEEKKPYEEKAEKEKARYEKAYPAYK 69


>gnl|CDD|197700 smart00398, HMG, high mobility group. 
          Length = 70

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYR 176
           G RWK +S  EK PY E+  +  + + E+ P+Y+
Sbjct: 37  GERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70


>gnl|CDD|238685 cd01389, MATA_HMG-box, MATA_HMG-box, class I member of the HMG-box
           superfamily of DNA-binding proteins. These proteins
           contain a single HMG box, and bind the minor groove of
           DNA in a highly sequence-specific manner. Members
           include the fungal mating type gene products MC, MATA1
           and Ste11.
          Length = 77

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183
           G  W++ S   K  Y E      + H  ++PDY+Y PR   
Sbjct: 37  GRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRKSS 77


>gnl|CDD|238037 cd00084, HMG-box, High Mobility Group (HMG)-box is found in a
           variety of eukaryotic chromosomal proteins and
           transcription factors. HMGs bind to the minor groove of
           DNA and have been classified by DNA binding preferences.
           Two phylogenically distinct groups of Class I proteins
           bind DNA in a sequence specific fashion and contain a
           single HMG box. One group (SOX-TCF) includes
           transcription factors, TCF-1, -3, -4; and also SRY and
           LEF-1, which bind four-way DNA junctions and duplex DNA
           targets. The second group (MATA) includes fungal mating
           type gene products MC, MATA1 and Ste11. Class II and III
           proteins (HMGB-UBF) bind DNA in a non-sequence specific
           fashion and contain two or more tandem HMG boxes. Class
           II members include non-histone chromosomal proteins,
           HMG1 and HMG2, which bind to bent or distorted DNA such
           as four-way DNA junctions, synthetic DNA cruciforms,
           kinked cisplatin-modified DNA, DNA bulges, cross-overs
           in supercoiled DNA, and can cause looping of linear DNA.
           Class III members include nucleolar and mitochondrial
           transcription factors, UBF and mtTF1, which bind
           four-way DNA junctions.
          Length = 66

 Score = 34.1 bits (79), Expect = 0.006
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHP 173
           G  WK++S  EK+ Y E+  +  + + ++ P
Sbjct: 36  GEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66


>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
           A system-associated.  Members of this protein family
           occur, one to three members per genome, in the same
           species of Euryarchaeota as contain the predicted
           protein-sorting enzyme archaeosortase (TIGR04125) and
           its cognate protein-sorting signal PGF-CTERM
           (TIGR04126).
          Length = 815

 Score = 35.0 bits (81), Expect = 0.032
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 122 MSVWGAG-GESPYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLH 168
           M+ W AG   S Y M    P          +   Q YYE  +  ++LH
Sbjct: 598 MATWLAGEDPSDYYMTVYQPGPQTTGYGTVSVPTQRYYE--TMEARLH 643


>gnl|CDD|113156 pfam04375, HemX, HemX.  This family consists of several bacterial
           HemX proteins. The hemX gene is not essential for haem
           synthesis in B. subtilis. HemX is a polytopic membrane
           protein which by an unknown mechanism down-regulates the
           level of HemA.
          Length = 372

 Score = 32.6 bits (74), Expect = 0.17
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7   LSSLKLASESQQKQQM-EIHRFHQEQFKRQQEHLLQQQHKIQELQ 50
           L+ L  A E+Q  Q++  + R +QE   + ++ L Q    + ELQ
Sbjct: 69  LTQLAQALEAQLAQEVRVLIRDNQEALAQLEKVLGQLDKSLAELQ 113


>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
           domain [Chromatin structure and dynamics].
          Length = 211

 Score = 31.0 bits (70), Expect = 0.38
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 134 KMPEETPDKGARWKAMSNAEKQPYYEE-QSRLSKLHMEKHPD 174
              E       +WK +++ EK+PYY+E  S   +   EK   
Sbjct: 97  TFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEY 138


>gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III
           members of the HMG-box superfamily of DNA-binding
           proteins. These proteins bind the minor groove of DNA in
           a non-sequence specific fashion and contain two or more
           tandem HMG boxes. Class II members include non-histone
           chromosomal proteins, HMG1 and HMG2, which bind to bent
           or distorted DNA such as four-way DNA junctions,
           synthetic DNA cruciforms, kinked cisplatin-modified DNA,
           DNA bulges, cross-overs in supercoiled DNA, and can
           cause looping of linear DNA. Class III members include
           nucleolar and mitochondrial transcription factors, UBF
           and mtTF1, which bind four-way DNA junctions.
          Length = 66

 Score = 28.7 bits (65), Expect = 0.55
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 143 GARWKAMSNAEKQPYYEE 160
           G +WK +S  EK+ Y E+
Sbjct: 36  GEKWKELSEEEKKKYEEK 53


>gnl|CDD|217933 pfam04156, IncA, IncA protein.  Chlamydia trachomatis is an
           obligate intracellular bacterium that develops within a
           parasitophorous vacuole termed an inclusion. The
           inclusion is non-fusogenic with lysosomes but intercepts
           lipids from a host cell exocytic pathway. Initiation of
           chlamydial development is concurrent with modification
           of the inclusion membrane by a set of C.
           trachomatis-encoded proteins collectively designated
           Incs. One of these Incs, IncA, is functionally
           associated with the homotypic fusion of inclusions. This
           family probably includes members of the wider Inc family
           rather than just IncA.
          Length = 186

 Score = 30.1 bits (68), Expect = 0.76
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 4   SVILSSLKLASESQQKQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQVFNYSSLS 58
           ++ L  L L +  Q  +  ++     E     ++ L + Q ++++L+       S
Sbjct: 54  ALGLLCLLLKAPVQSVRPQKLEELQGEL-SELKQQLSELQEELEDLEERIAELES 107


>gnl|CDD|153354 cd07670, BAR_SNX18, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
           Nexin 18.  BAR domains are dimerization, lipid binding
           and curvature sensing modules found in many different
           proteins with diverse functions. Sorting nexins (SNXs)
           are Phox homology (PX) domain containing proteins that
           are involved in regulating membrane traffic and protein
           sorting in the endosomal system. SNXs differ from each
           other in their lipid-binding specificity, subcellular
           localization and specific function in the endocytic
           pathway. A subset of SNXs also contain BAR domains. The
           PX-BAR structural unit determines the specific membrane
           targeting of SNXs. SNX18 is localized to peripheral
           endosomal structures, and acts in a trafficking pathway
           that is clathrin-independent but relies on AP-1 and
           PACS1. BAR domains form dimers that bind to membranes,
           induce membrane bending and curvature, and may also be
           involved in protein-protein interactions.
          Length = 207

 Score = 30.3 bits (68), Expect = 0.80
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)

Query: 23  EIHRFHQ---EQFKRQQEHLLQQQ 43
           EIH FH+     FK Q +H LQQQ
Sbjct: 166 EIHHFHKIRVRDFKSQMQHFLQQQ 189


>gnl|CDD|204115 pfam09011, DUF1898, Domain of unknown function (DUF1898).  This
           domain is predominantly found in Maelstrom homolog
           proteins. It has no known function.
          Length = 69

 Score = 28.2 bits (63), Expect = 0.84
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 134 KMPEETPDKGARWKAMSNAEKQPYYEE 160
            + E +     +WKAMS  EK+ Y E+
Sbjct: 31  GVAEFSKLCSEKWKAMSEEEKEKYEEK 57


>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
          Length = 520

 Score = 29.7 bits (67), Expect = 1.7
 Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 174 DYRYRPRPKRTCIVDGKKMRISEYKTLMRQRRNEMRQLWCRGEAGPSGSGGPAFPFPGDG 233
           D R+R    RT   D        +  ++R    E R+     E      GG     P   
Sbjct: 360 DDRFRADMLRTW--DDWDAFALWHARVLRGEFAERRRPRGPPENEDEADGGGGLAPP--- 414

Query: 234 SLSPSDMMPFSPGSPGSMDSHDED 257
              P    P  P  P   D  D++
Sbjct: 415 ---PEPPRPPPPPFPDDDDEGDDE 435


>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
           envelope biogenesis, outer membrane].
          Length = 387

 Score = 29.1 bits (65), Expect = 2.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 13  ASESQQKQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQV 51
           A E + KQ  E  R  Q + +R +    Q+Q +  E Q 
Sbjct: 89  AEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQA 127



 Score = 27.6 bits (61), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 11  KLASESQQKQQMEIHRFHQEQFKRQQEHLLQQ---QHKIQE 48
           +L ++ QQKQ  E  +  Q + K+Q+E   +    Q K  E
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150


>gnl|CDD|218351 pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase.  Members of
           this family are thought to be Formiminotransferase-
           cyclodeaminase enzymes EC:4.3.1.4. This domain is found
           in the C-terminus of the bifunctional animal members of
           the family.
          Length = 176

 Score = 28.3 bits (64), Expect = 3.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 133 YKMPEETP-DKGARWKAMSNAEKQ 155
           YK+P+ET  +K AR  A+  A KQ
Sbjct: 86  YKLPKETEEEKAAREAAIQEALKQ 109


>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal.  This domain
          corresponds to the alpha helical C terminal domain of
          phospholipase C beta.
          Length = 181

 Score = 27.5 bits (61), Expect = 5.0
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 15 ESQQKQQMEIHRFHQEQF----KRQQEHLLQQQHKIQEL 49
          + + +QQ E+    +EQ+    KR+++HL +Q  K+ EL
Sbjct: 7  DLKDRQQQELLELREEQYDSEKKRKEQHLKEQIQKLTEL 45


>gnl|CDD|218061 pfam04394, DUF536, Protein of unknown function, DUF536.  This
          family aligns the C-terminal region from several
          bacterial proteins of unknown function that may be
          involved in a theta-type replication mechanism.
          Length = 41

 Score = 25.4 bits (56), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 29 QEQFKRQQEHLLQQQHKIQELQ 50
          Q+   +QQ+  LQ   K++EL+
Sbjct: 16 QKLLDQQQQLALQANKKLEELE 37


>gnl|CDD|226044 COG3513, COG3513, Predicted CRISPR-associated nuclease, contains
           McrA/HNH-nuclease and RuvC-like nuclease domain [Defense
           mechanisms].
          Length = 1088

 Score = 28.3 bits (63), Expect = 5.5
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 17/119 (14%)

Query: 3   KSVILSSLKLASE------SQQKQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQVFNYSS 56
              IL + K+ +          +  +E+ R   + FK         +  I++ Q  NY +
Sbjct: 486 LRAILQARKVVNALVKVYGKPARIVIEMAREVGKTFK--------GRKNIEKRQEENYKA 537

Query: 57  LSSSA---GKMSMSSPGKEKTPEYNMHGMYSPHHDKNMYSPHDKNMYSPHDKNMYSPHH 112
              +    G++    P + K+ +     +Y   + K MYS  + +++   DK  Y   H
Sbjct: 538 REKAIKEFGQILKEHPLENKSKDILKLRLYYLQNGKCMYSGQEIDIHRLSDKGYYEIDH 596


>gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis
           [Coenzyme metabolism].
          Length = 391

 Score = 27.8 bits (62), Expect = 5.6
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 6   ILSSLKLASESQQ--KQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQ 50
            L +L+LA E+Q+   Q   +    Q +  R +  L   Q ++ ELQ
Sbjct: 71  QLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQ 117


>gnl|CDD|151029 pfam10456, BAR_3_WASP_bdg, WASP-binding domain of Sorting nexin
           protein.  The C-terminal region of the Sorting nexin
           group of proteins appears to carry a BAR-like
           (Bin/amphiphysin/Rvs) domain. This domain is very
           diverse and the similarities with other BAR domains are
           few. In the Sorting nexins it is associated with family
           PX, pfam00787.13, and in combination with PX appears to
           be necessary to bind WASP along with p85 to form a
           multimeric signalling complex.
          Length = 237

 Score = 27.8 bits (62), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 21  QMEIHRFHQEQ---FKRQQEHLLQQQ 43
           Q E++ FH  +   FK Q +H L+QQ
Sbjct: 193 QAEMNHFHSNRIYDFKSQMQHYLEQQ 218


>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3.  The
           C.elegans Notch pathway, involved in the control of
           growth, differentiation and patterning in animal
           development, relies on either of the receptors GLP-1 or
           LIN-12. Both these receptors promote signalling by the
           recruitment of LAG-3 to target promoters, where it then
           acts as a transcriptional activator. LAG-3 works as a
           ternary complex together with the DNA binding protein,
           LAG-1.
          Length = 476

 Score = 28.0 bits (61), Expect = 6.0
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 15  ESQQKQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQ 50
           + +Q+Q M  H+  Q+Q  +QQ+ LLQQQ ++ +LQ
Sbjct: 347 QQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQ 382


>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
          Length = 1004

 Score = 28.1 bits (62), Expect = 6.1
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 15/57 (26%)

Query: 64  MSMSSPGKEKTPEYNMHGMYSPHHDKNMY---------------SPHDKNMYSPHDK 105
            +  SP KE    Y+ +   SP    N+Y               S   KN++S  DK
Sbjct: 787 KNKKSPKKESFKIYDYYLKASPDFYHNLYFKNFNSGKSMKLVNASDEHKNIFSEEDK 843


>gnl|CDD|129204 TIGR00096, TIGR00096, probable S-adenosylmethionine-dependent
          methyltransferase, YraL family.  No member of this
          family is characterized, but pfam00590 (tetrapyrrole
          methylase) demonstrates homology between this family
          and its other members, which include several methylases
          for the tetrapyrrole class of compound, as well as the
          enzyme diphthine synthase [Unknown function, Enzymes of
          unknown specificity].
          Length = 276

 Score = 27.5 bits (61), Expect = 6.1
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 10/52 (19%)

Query: 19 KQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQVFNYSSLSSSAGKMSMSSPG 70
            +            +++++LL       +L++ N  ++SS AG   + S  
Sbjct: 48 TPKAFHIDNEF----QEKQNLL-----AAKLEIGNNIAVSSDAG-PPLISDP 89


>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional.
          Length = 457

 Score = 27.8 bits (62), Expect = 6.2
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 11/85 (12%)

Query: 131 SPYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKL------HMEKHPDYRYRPRPKRT 184
           SP +M +  P     W+ + +A+ +P  E   +   +       M      +Y       
Sbjct: 114 SPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFAAGMHGMRHMQ--QYAAANTPQ 171

Query: 185 CIVDGKKMRISEY-KTLMRQRRNEM 208
            I        S       R++RN +
Sbjct: 172 AIFIA--FDASNLVSAQAREQRNTL 194


>gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional.
          Length = 684

 Score = 28.0 bits (63), Expect = 6.2
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 12  LASESQQKQQMEIHRFHQEQ--FKRQQEHLLQQQ 43
           + ++   +Q   I R  Q+     R Q   LQQQ
Sbjct: 98  ILAQVLPQQLDLIARLTQQDKWLTRSQVSGLQQQ 131


>gnl|CDD|114278 pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6.  The
           insect pathogenic Gram-positive Bacillus thuringiensis
           secretes immune inhibitor A, a metallopeptidase, which
           specifically cleaves host antibacterial proteins. A
           homologue of immune inhibitor A, PrtV, has been
           identified in the Gram-negative human pathogen Vibrio
           cholerae.
          Length = 646

 Score = 27.9 bits (62), Expect = 7.0
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 18/69 (26%)

Query: 94  PHDKNMYSPHDKNMYSPHHDKSEEQDLLMSVWGAGGESPYKMPEETPDKGARWKAMSNAE 153
           PH  N  +     MY   +D+   QD+L       G+  Y  P+     G    +     
Sbjct: 27  PH--NNITKEPTYMYYEDYDQEHYQDMLF------GDEGYTGPD-----GENVNSF---- 69

Query: 154 KQPYYEEQS 162
           KQ YYEEQS
Sbjct: 70  KQ-YYEEQS 77


>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
           TolA; Provisional.
          Length = 387

 Score = 27.5 bits (61), Expect = 7.7
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 13  ASESQQKQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQ 50
           A E QQKQ  E  R  Q + +R      Q+Q K  E  
Sbjct: 89  AEELQQKQAAEQERLKQLEKERLAA---QEQKKQAEEA 123


>gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family
           protein.  A newly defined histidine kinase (TIGR03785)
           and response regulator (TIGR03787) gene pair occurs
           exclusively in Proteobacteria, mostly of marine origin,
           nearly all of which contain a subfamily 6 sortase
           (TIGR03784) and its single dedicated target protein
           (TIGR03788) adjacent to to the sortase. This protein
           family shows up in only in those species with the
           histidine kinase/response regulator gene pair, and often
           adjacent to that pair. It belongs to the OmpA protein
           family (pfam00691). Its function is unknown. We assign
           the gene symbol pdsO, for Proteobacterial Dedicated
           Sortase system OmpA family protein.
          Length = 239

 Score = 27.1 bits (60), Expect = 8.2
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 17  QQKQQMEIHRFHQEQFKRQQEHLLQQQHKIQELQVFNYSSLSSSAGKMS 65
           QQ+QQM      Q+  ++ +    Q Q  ++ LQ      L   A  M+
Sbjct: 88  QQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLLEELALGMN 136


>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
           Provisional.
          Length = 624

 Score = 27.3 bits (60), Expect = 9.2
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 6/42 (14%)

Query: 212 WCRGEAGPSGSGGPAFPFPGDGSLSPSDMMPFSPGSPGSMDS 253
           W      P  SG P  P P     SP       PG+P S+ S
Sbjct: 436 WDDAPPAPPRSGIPPRPAPRMPEASP------VPGAPDSVAS 471


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,751,246
Number of extensions: 1149783
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1089
Number of HSP's successfully gapped: 60
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.1 bits)