RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6707
(257 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 48.6 bits (116), Expect = 1e-08
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183
GA WK +S EK+P+ +E RL LHM++HPDY+YRPR K
Sbjct: 38 GAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 78
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 47.5 bits (113), Expect = 4e-08
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPK 182
G +WK ++ AEK P+++E +L +H EK+P+Y+YRPR K
Sbjct: 40 GYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRK 79
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 47.6 bits (113), Expect = 4e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183
G RW A+S E+ YYE + +LHM+ +P + R +
Sbjct: 38 GRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGK 78
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 45.6 bits (108), Expect = 2e-07
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 134 KMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPK 182
+ + G W + +KQPY ++ ++L + + + YR + +P
Sbjct: 29 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 77
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 42.1 bits (99), Expect = 2e-06
Identities = 26/33 (78%), Positives = 31/33 (93%)
Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 175
G+RWKAM+N EKQPYYEEQ+RLSK H+EK+PDY
Sbjct: 38 GSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 70
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 38.0 bits (88), Expect = 2e-04
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 143 GARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183
+WK +S EK Y+++ + K + + + +
Sbjct: 49 SQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEE 89
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 35.6 bits (82), Expect = 9e-04
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 134 KMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKR 183
+ E + G+RW+ +S ++K+ Y + + + + P+
Sbjct: 33 PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQD 82
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 34.4 bits (79), Expect = 0.001
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 133 YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRY 177
K+ E G W+AM +K + + ++ + ++
Sbjct: 29 IKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAVKEFEA 71
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 33.7 bits (77), Expect = 0.003
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 130 ESPYKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHMEKHPDY 175
++ E + RWK MS EK + + + + Y
Sbjct: 26 DASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 32.9 bits (75), Expect = 0.006
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 145 RWKAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRP 179
+WKA++ EKQPY + K + + Y
Sbjct: 58 KWKALTPEEKQPYEAKAQADKKRYESEKELYNATL 92
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 32.2 bits (73), Expect = 0.010
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 133 YKMPEETPDKGARWKAMSNAEKQPYYEEQSRLSKLHM-------EKHPDYRYRPR 180
+ T ++K + +K Y ++ R + E HPD +
Sbjct: 36 MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAK 90
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 27.2 bits (60), Expect = 0.71
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 145 RWKAMSNAEKQPYYEEQSRLSKLHMEK 171
W +S +K Y ++ L K
Sbjct: 58 MWNDLSEKKKAKYKAREAALKAQSERK 84
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.1 bits (63), Expect = 0.97
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 147 KAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVDGKKMRISEYK 198
K MS EK EE +L K + CI+D K RI+ +K
Sbjct: 117 KQMSKEEKLKIKEENEKLLKEYG--------------FCIMDNHKERIANFK 154
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.6 bits (59), Expect = 2.9
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 147 KAMSNAEKQPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVDGKKMRISEYK 198
K +++ EK+ E+ + + + C +DG++ ++ +K
Sbjct: 109 KQLTSQEKKQIRLEREKFEE--------------DYKFCELDGRREQVGNFK 146
>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus
anthracis, Dlp-2 [TaxId: 1392]}
Length = 146
Score = 24.7 bits (53), Expect = 8.8
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 22 MEIHRFHQEQFKRQQEHLLQQQHKIQELQVFNYSSLSSSAGKMSMSSPGKEKTPEYNMHG 81
+H +E + ++ + +I L+ +++ S + G K M
Sbjct: 37 FTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYL-ATSSVNEGTSKESAEEMVQ 95
Query: 82 MYSPHHDKNMY 92
+ +
Sbjct: 96 TLVNDYSALIQ 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.384
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 954,959
Number of extensions: 43672
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 28
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)