BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6708
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 23/175 (13%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI--SYFP-ENRGQLYGSSMDW 98
+FD+++VGAG AG+++A+RL E ++L++EAG N+ + P G + S DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
+ T Q+G + + P G+ LGGSSS+H + RG + D+D + G + + +
Sbjct: 62 NYTTTAQAGY----NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 155 DNVLKYFKKSEFMT----DSSKYNEF----HGTQGPFVVK----PSPRVDKTFDT 197
DN+ ++ +K+E + + + EF HGT G + P+P D+ T
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLAT 172
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF-PENRGQLYGSSMDWAFVT 102
D +IVG G+AGS+LA+RL+E +LL+EAG +P++ + P L G S DW + T
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRT 78
Query: 103 EEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVL 158
E Q+G + + G+ +GGSS +H++ Y RG D+ W G + +D +L
Sbjct: 79 EAQAGT----AGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL 134
Query: 159 KYFKKSE 165
F+ E
Sbjct: 135 PVFQAIE 141
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN---ISYFPENRGQLYGSSMD 97
+ +D+II G G G +A++L E +L++E G SN I P GQ++G+++D
Sbjct: 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82
Query: 98 WAFVTEEQSGMFLSLSNQRTT-IPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAF 152
++T + L N RT I GKGLGGS+ I+ +TR D D W G + +
Sbjct: 83 QNYLT-------VPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGW 135
Query: 153 KFDNVLKYFKKSE 165
+DN+ +Y KK+E
Sbjct: 136 NWDNMFEYMKKAE 148
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG-GDPSNISYF--PENRGQLYGSSMDW 98
FDF+IVG GTAG+ +A RLAE + +L+VEAG G+P +I P + L S DW
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 99 AFVTEEQSGMFLSLSNQRTTIPC--GKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFK 153
A+ T M +R P GK LGGSSS++ + G +D+W G +
Sbjct: 66 AYKTT----MVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 154 FDNVLKYFKKSEFMTDSSK 172
+D ++ Y +KS D +
Sbjct: 122 WDPLVPYLRKSATYHDDPR 140
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENR---GQLYGSSMD 97
+ D+II G G G A+RL E + ++L++E+G S+ E+ G ++GSS+D
Sbjct: 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 77
Query: 98 WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFK 153
A+ T E L+ +NQ I G GLGGS+ ++ +TR D W G + +
Sbjct: 78 HAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 154 FDNVLKYFKKSE 165
+DNV Y ++E
Sbjct: 133 WDNVAAYSLQAE 144
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NR-GQLYGSSMDW 98
+EFD+I+VG G+AG+ +A+RL+E + ++ LVEAG D + + +R +L S DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
+ E Q + + R + +GG SS +S D DEW G +
Sbjct: 72 DYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 155 DNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
+ +K+ E D+ HG GP + P D T
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NR-GQLYGSSMDW 98
+EFD+I+VG G+AG+ +A+RL+E + ++ LVEAG D + + +R +L S DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
+ E Q + + R + +GG SS +S D DEW G +
Sbjct: 72 DYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 155 DNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
+ +K+ E D+ HG GP + P D T
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY-------GSS 95
+D++IVG GT+G LA+ L+E + +L++E G P+ G +Y G +
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 96 MDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYD 150
FV+E+ + N R G+ LGG+S I++ Y R ++ Y G D
Sbjct: 85 PVERFVSED------GIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGVD 128
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY-------GSS 95
+D++IVG GT+G LA+ L+E + +L++E G P+ G +Y G +
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 96 MDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYD 150
FV+E+ + N R G+ LGG+S I++ Y R ++ Y G D
Sbjct: 85 PVERFVSED------GIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGVD 128
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NR-GQLYGSSMDW 98
+EFD+I+VG G+AG+ +A+RL+E + ++ LVEAG D + + +R +L S DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
+ E Q + + R + +GG SS ++ D DEW G +
Sbjct: 72 DYPIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGATGWNA 126
Query: 155 DNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
+ +K+ E D+ HG GP + P D T
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVT 102
+D++IVG GT+G LA+ L+E + +L++E G P+ + G +Y +
Sbjct: 27 YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGTLPTAYPNLLTSDGFIYNLQQE----D 80
Query: 103 EEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYD----EWGYD 150
+ Q+ + +S G+ LGG+S I++ Y R +++ + EW D
Sbjct: 81 DGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWDMD 132
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 43 FDFIIVGAGTAGSILASRLA 62
FD++IVGAG AGS+LA RLA
Sbjct: 30 FDYLIVGAGFAGSVLAERLA 49
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
+D+IIVGAG G I A RL+E +LL+E GG
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGG 35
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
+D+IIVGAG G I A RL+E +LL+E GG
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGG 40
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN 80
P+ FD I++G G GS LAS +A +R +LL+E P +
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVA-MRGHRVLLLEREAFPRH 44
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 32.0 bits (71), Expect = 0.25, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
P P + P + D +IVG G AG LA++LA +VE P
Sbjct: 20 PLAPAHTEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP 68
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF 84
Q P+E D ++VGAG +G RL E+ ++ ++E GD + Y+
Sbjct: 12 QPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWYW 57
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF 84
Q P+E D ++VGAG +G RL E+ ++ ++E GD + Y+
Sbjct: 12 QPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWYW 57
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF 84
Q P+E D ++VGAG +G RL E+ ++ ++E GD + Y+
Sbjct: 12 QPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWYW 57
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF 84
Q P+E D ++VGAG +G RL E+ ++ ++E GD + Y+
Sbjct: 12 QPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWYW 57
>pdb|2Q74|A Chain A, Mycobacterium Tuberculosis Suhb
pdb|2Q74|B Chain B, Mycobacterium Tuberculosis Suhb
pdb|2Q74|C Chain C, Mycobacterium Tuberculosis Suhb
Length = 299
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 56 ILASRLAEVRSWNILLVEAGGDPSNISYFPENR 88
+L RLA++R + +L E GG P++++ P +R
Sbjct: 66 LLRDRLAQLRPGDPILGEEGGGPADVTATPSDR 98
>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
Length = 344
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
E D +IVGAG+ G A L+ +R I +VEAG P ++ GQL+ A
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG---GQLFS-----AM 130
Query: 101 VTEEQSGMFL 110
V + + +FL
Sbjct: 131 VMRKPADVFL 140
>pdb|3FBS|A Chain A, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
pdb|3FBS|B Chain B, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
Length = 297
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+FD II+G AG A +L R NILLV+AG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARK-NILLVDAG 34
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 37 DQWPQEFDFIIVGAGTAGSILASRLAEV-----RSWNILLVE 73
+++ +E D +IVGAG AG A+RL ++ + + LVE
Sbjct: 30 ERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVE 71
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSS 129
SGMF+ +N R T+ G+ LGGSS
Sbjct: 803 SGMFIEDANTRLTLLTGQPLGGSS 826
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSS 129
SGMF+ +N R T+ G+ LGGSS
Sbjct: 833 SGMFIEDANTRLTLLTGQPLGGSS 856
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSS 129
SGMF+ +N R T+ G+ LGGSS
Sbjct: 833 SGMFIEDANTRLTLLTGQPLGGSS 856
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSS 129
SGMF+ +N R T+ G+ LGGSS
Sbjct: 833 SGMFIEDANTRLTLLTGQPLGGSS 856
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSS 129
SGMF+ +N R T+ G+ LGGSS
Sbjct: 833 SGMFIEDANTRLTLLTGQPLGGSS 856
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSS 129
SGMF+ +N R T+ G+ LGGSS
Sbjct: 833 SGMFIEDANTRLTLLTGQPLGGSS 856
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEA 74
I+VGAG +G A RL+E ++L++EA
Sbjct: 8 IVVGAGMSGISAAKRLSEAGITDLLILEA 36
>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|B Chain B, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|C Chain C, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|D Chain D, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1BXZ|A Chain A, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|B Chain B, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|C Chain C, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|D Chain D, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
Length = 352
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 49 GAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGM 108
G G +I+A A++ + + +V+ GG +N++YF E L ++W GM
Sbjct: 233 GKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGE-VLPVPRLEWG------CGM 285
Query: 109 FLSLSNQRTTIPCGKGLGGSSSIHSL----YYTRGDSRDYDEWGYDAFKFDNVLKYFKKS 164
TI G GG + L +Y R D + FDN+ K F
Sbjct: 286 ------AHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRG--FDNIEKAFM-- 335
Query: 165 EFMTDSSK 172
M D K
Sbjct: 336 -LMKDKPK 342
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
+D+IIVG+G G++ A+ L ++ +L++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNK-KVLVIE 31
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEA 74
I+VGAG +G A RL+E ++L++EA
Sbjct: 8 IVVGAGMSGISAAKRLSEAGITDLLILEA 36
>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|B Chain B, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|C Chain C, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|D Chain D, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
Length = 352
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 49 GAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGM 108
G G +I+A A++ + + +V+ GG +N++YF E G +D V + G
Sbjct: 233 GKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGE------GEVLD---VPRLEWGC 283
Query: 109 FLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMT 168
++ + + G L I ++Y R D + FDN+ K F M
Sbjct: 284 GMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRG--FDNIEKAFM---LMK 338
Query: 169 DSSK 172
D K
Sbjct: 339 DKPK 342
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 650
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 37 DQWPQEFDFIIVGAGTAGSILAS 59
D P +FD I++G G SI+A+
Sbjct: 3 DNLPSDFDVIVIGTGLPESIIAA 25
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 650
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 37 DQWPQEFDFIIVGAGTAGSILAS 59
D P +FD I++G G SI+A+
Sbjct: 3 DNLPSDFDVIVIGTGLPESIIAA 25
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
Length = 538
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 44 DFIIVGAGTAGSILASRLAEV--RSWNILLVEAGGDP 78
+ +IVG GTAG + AS L + NI L+E+ P
Sbjct: 7 NIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP 43
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 44 DFIIVGAGTAGSILASRLAEV--RSWNILLVEAGGDP 78
+ +IVG GTAG + AS L + NI L+E+ P
Sbjct: 7 NIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP 43
>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of C. Beijerinckii
Adh By T. Brockii Adh
Length = 351
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 49 GAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE 86
G G +I+A A++ + + +V+ GG +N++YF E
Sbjct: 233 GKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGE 270
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNV 157
T+ CG I SL Y D++ + +WG D K+DN
Sbjct: 98 TLTCG------GHIASLGYEDIDAKTWAKWGIDYLKYDNC 131
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 34 QDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+ P+ FD +++G G +G A L+E + N+L++EA
Sbjct: 13 EKPNLAGHMFDVVVIGGGISGLAAAKLLSEYKI-NVLVLEA 52
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEV 64
Q+FD +++GAG G + A R A++
Sbjct: 2 QKFDVVVIGAGPGGYVAAIRAAQL 25
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 133 SLYYTRGDSRDYDEWGYDAFKFDNV 157
SL Y D+ D+ +WG D K+DN
Sbjct: 110 SLGYEDVDAADFADWGVDYLKYDNC 134
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
++D +I+G G AGS A +L+ R ILLV++
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDS 37
>pdb|3UPG|A Chain A, Loop Deletion Mutant Of Salmonella Typhi Osmoporin
(Ompc):an Outer Membrane Protein
Length = 338
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 19/77 (24%)
Query: 63 EVRSWNILLVEAGGDPSNISYFPENRGQLYGS-----------SMDWAFVTEEQSGMFLS 111
+V SW +L E GGD F + RG Y + +D+A + ++G S
Sbjct: 99 DVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKNG---S 155
Query: 112 LSNQRTTIPCGKGLGGS 128
L NQ G G GGS
Sbjct: 156 LLNQN-----GDGYGGS 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,179,214
Number of Sequences: 62578
Number of extensions: 253919
Number of successful extensions: 673
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 64
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)