Query psy6708
Match_columns 197
No_of_seqs 212 out of 1580
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:59:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 1.8E-37 4E-42 284.4 13.4 158 38-195 53-214 (623)
2 PRK02106 choline dehydrogenase 100.0 2.7E-31 5.9E-36 245.6 12.0 142 41-188 4-153 (560)
3 TIGR01810 betA choline dehydro 100.0 8.9E-31 1.9E-35 240.8 11.3 144 44-193 1-152 (532)
4 PF00732 GMC_oxred_N: GMC oxid 100.0 6.6E-31 1.4E-35 223.7 9.0 145 43-193 1-151 (296)
5 COG2303 BetA Choline dehydroge 100.0 2.4E-30 5.2E-35 238.8 10.7 150 39-193 4-161 (542)
6 PLN02785 Protein HOTHEAD 99.9 6.1E-24 1.3E-28 197.9 11.3 119 38-168 51-171 (587)
7 TIGR02462 pyranose_ox pyranose 99.6 1.1E-14 2.3E-19 134.7 10.1 124 43-171 1-164 (544)
8 COG0644 FixC Dehydrogenases (f 98.6 7.1E-08 1.5E-12 86.0 5.2 37 41-78 2-38 (396)
9 PRK06481 fumarate reductase fl 98.5 5.6E-07 1.2E-11 82.9 8.6 40 38-78 57-96 (506)
10 PRK10157 putative oxidoreducta 98.4 2.4E-07 5.2E-12 83.6 5.3 36 41-77 4-39 (428)
11 PRK10015 oxidoreductase; Provi 98.4 2.5E-07 5.4E-12 83.6 5.3 37 41-78 4-40 (429)
12 PRK07121 hypothetical protein; 98.4 4.7E-07 1E-11 82.9 7.0 49 27-78 7-55 (492)
13 KOG1298|consensus 98.3 8.7E-07 1.9E-11 78.7 6.2 40 38-78 41-80 (509)
14 PF01946 Thi4: Thi4 family; PD 98.3 5.3E-07 1.2E-11 74.6 4.1 36 42-78 17-52 (230)
15 TIGR02032 GG-red-SF geranylger 98.3 9.1E-07 2E-11 74.1 5.1 34 43-77 1-34 (295)
16 PF03486 HI0933_like: HI0933-l 98.3 7.9E-07 1.7E-11 80.1 4.7 35 43-78 1-35 (409)
17 TIGR02023 BchP-ChlP geranylger 98.3 8.6E-07 1.9E-11 78.6 4.7 32 43-75 1-32 (388)
18 PF01494 FAD_binding_3: FAD bi 98.3 1.1E-06 2.4E-11 75.0 5.1 36 42-78 1-36 (356)
19 TIGR00292 thiazole biosynthesi 98.3 1.2E-06 2.6E-11 74.1 5.1 36 42-78 21-56 (254)
20 COG2081 Predicted flavoprotein 98.3 1.2E-06 2.6E-11 78.0 5.0 39 41-80 2-40 (408)
21 PRK04176 ribulose-1,5-biphosph 98.2 1.4E-06 3.1E-11 73.7 5.1 36 42-78 25-60 (257)
22 PTZ00363 rab-GDP dissociation 98.2 1.2E-06 2.7E-11 79.6 4.7 38 40-78 2-39 (443)
23 PLN00093 geranylgeranyl diphos 98.2 1.5E-06 3.2E-11 79.2 5.1 37 40-77 37-73 (450)
24 PRK07364 2-octaprenyl-6-methox 98.2 2.1E-06 4.5E-11 76.3 6.0 39 39-78 15-53 (415)
25 PRK08274 tricarballylate dehyd 98.2 1.7E-06 3.6E-11 78.5 5.3 37 40-77 2-38 (466)
26 PRK07608 ubiquinone biosynthes 98.2 1.9E-06 4.2E-11 75.7 5.4 38 40-78 3-40 (388)
27 COG0562 Glf UDP-galactopyranos 98.2 2E-06 4.4E-11 74.7 5.0 36 42-78 1-36 (374)
28 PF13450 NAD_binding_8: NAD(P) 98.2 2.9E-06 6.3E-11 57.6 4.7 31 47-78 1-31 (68)
29 PTZ00058 glutathione reductase 98.2 4.1E-06 8.9E-11 78.3 7.1 39 37-76 43-81 (561)
30 COG1635 THI4 Ribulose 1,5-bisp 98.2 2E-06 4.2E-11 71.4 4.2 36 42-78 30-65 (262)
31 PRK08020 ubiF 2-octaprenyl-3-m 98.2 2.2E-06 4.9E-11 75.5 4.9 36 40-76 3-38 (391)
32 PLN02985 squalene monooxygenas 98.2 5.1E-06 1.1E-10 76.9 7.4 41 36-77 37-77 (514)
33 COG1233 Phytoene dehydrogenase 98.2 2.6E-06 5.5E-11 78.3 5.2 37 41-78 2-38 (487)
34 PF01266 DAO: FAD dependent ox 98.2 2.7E-06 5.8E-11 72.7 5.0 32 44-76 1-32 (358)
35 PRK11259 solA N-methyltryptoph 98.1 2.8E-06 6.1E-11 74.3 5.2 36 41-77 2-37 (376)
36 PRK08010 pyridine nucleotide-d 98.1 2.7E-06 5.7E-11 76.8 5.2 35 41-76 2-36 (441)
37 PRK08773 2-octaprenyl-3-methyl 98.1 3.3E-06 7.2E-11 74.6 5.5 37 40-77 4-40 (392)
38 TIGR01421 gluta_reduc_1 glutat 98.1 2.7E-06 5.8E-11 77.2 4.8 35 41-76 1-35 (450)
39 PF00890 FAD_binding_2: FAD bi 98.1 3E-06 6.5E-11 75.5 5.0 34 44-78 1-34 (417)
40 PRK06185 hypothetical protein; 98.1 3.4E-06 7.3E-11 74.8 5.3 37 40-77 4-40 (407)
41 TIGR02028 ChlP geranylgeranyl 98.1 2.6E-06 5.6E-11 76.2 4.6 34 43-77 1-34 (398)
42 PRK12837 3-ketosteroid-delta-1 98.1 3.8E-06 8.2E-11 77.5 5.4 39 38-78 3-41 (513)
43 TIGR01377 soxA_mon sarcosine o 98.1 3.5E-06 7.6E-11 73.8 4.9 34 43-77 1-34 (380)
44 PRK09126 hypothetical protein; 98.1 3.4E-06 7.5E-11 74.3 4.9 35 42-77 3-37 (392)
45 PRK07251 pyridine nucleotide-d 98.1 3.9E-06 8.4E-11 75.6 5.3 35 41-76 2-36 (438)
46 PRK06116 glutathione reductase 98.1 3.7E-06 8.1E-11 76.0 5.2 34 41-75 3-36 (450)
47 PF05834 Lycopene_cycl: Lycope 98.1 3.3E-06 7.2E-11 74.8 4.6 34 44-78 1-36 (374)
48 PRK12266 glpD glycerol-3-phosp 98.1 4E-06 8.7E-11 77.3 5.3 36 41-77 5-40 (508)
49 PRK13369 glycerol-3-phosphate 98.1 4E-06 8.7E-11 77.1 5.2 37 40-77 4-40 (502)
50 TIGR03364 HpnW_proposed FAD de 98.1 4.2E-06 9.1E-11 73.1 5.1 34 43-77 1-34 (365)
51 PRK07494 2-octaprenyl-6-methox 98.1 4.6E-06 1E-10 73.5 5.1 36 41-77 6-41 (388)
52 PRK12409 D-amino acid dehydrog 98.1 4.2E-06 9.1E-11 74.4 4.9 34 43-77 2-35 (410)
53 PRK07804 L-aspartate oxidase; 98.1 5.5E-06 1.2E-10 77.0 5.8 40 38-78 12-51 (541)
54 TIGR01424 gluta_reduc_2 glutat 98.1 4E-06 8.7E-11 75.9 4.7 33 42-75 2-34 (446)
55 PRK06370 mercuric reductase; V 98.1 5.4E-06 1.2E-10 75.3 5.2 35 41-76 4-38 (463)
56 PRK08013 oxidoreductase; Provi 98.1 5.4E-06 1.2E-10 73.8 5.1 35 42-77 3-37 (400)
57 PF12831 FAD_oxidored: FAD dep 98.1 4.5E-06 9.7E-11 75.4 4.6 34 44-78 1-34 (428)
58 PRK05192 tRNA uridine 5-carbox 98.0 5.1E-06 1.1E-10 78.2 5.0 35 41-76 3-37 (618)
59 PLN02463 lycopene beta cyclase 98.0 5.6E-06 1.2E-10 75.4 5.2 37 40-77 26-62 (447)
60 PRK06416 dihydrolipoamide dehy 98.0 5.3E-06 1.2E-10 75.2 5.0 35 41-76 3-37 (462)
61 TIGR01790 carotene-cycl lycope 98.0 5.4E-06 1.2E-10 73.0 4.9 34 44-78 1-34 (388)
62 PRK05976 dihydrolipoamide dehy 98.0 5.6E-06 1.2E-10 75.4 5.1 35 41-76 3-37 (472)
63 PLN02697 lycopene epsilon cycl 98.0 9.6E-06 2.1E-10 75.4 6.6 37 39-76 105-141 (529)
64 PRK05249 soluble pyridine nucl 98.0 6.2E-06 1.3E-10 74.7 5.2 36 41-77 4-39 (461)
65 TIGR01988 Ubi-OHases Ubiquinon 98.0 6E-06 1.3E-10 72.1 4.9 33 44-77 1-33 (385)
66 TIGR02730 carot_isom carotene 98.0 6E-06 1.3E-10 75.6 5.0 35 43-78 1-35 (493)
67 PRK05714 2-octaprenyl-3-methyl 98.0 5.8E-06 1.3E-10 73.4 4.7 34 42-76 2-35 (405)
68 PRK07045 putative monooxygenas 98.0 6.8E-06 1.5E-10 72.6 5.0 37 41-78 4-40 (388)
69 TIGR03329 Phn_aa_oxid putative 98.0 1.1E-05 2.3E-10 73.4 6.4 38 40-77 22-60 (460)
70 PRK11728 hydroxyglutarate oxid 98.0 6.4E-06 1.4E-10 73.1 4.9 36 42-77 2-38 (393)
71 TIGR01373 soxB sarcosine oxida 98.0 7.7E-06 1.7E-10 72.7 5.3 37 40-76 28-65 (407)
72 PRK12835 3-ketosteroid-delta-1 98.0 8.4E-06 1.8E-10 76.5 5.8 40 38-78 7-46 (584)
73 PRK06292 dihydrolipoamide dehy 98.0 7.7E-06 1.7E-10 74.0 5.3 34 41-75 2-35 (460)
74 TIGR00031 UDP-GALP_mutase UDP- 98.0 7.5E-06 1.6E-10 73.1 5.1 35 43-78 2-36 (377)
75 TIGR01350 lipoamide_DH dihydro 98.0 7.2E-06 1.6E-10 74.2 5.0 33 42-75 1-33 (461)
76 PRK11101 glpA sn-glycerol-3-ph 98.0 7.5E-06 1.6E-10 76.2 5.2 35 41-76 5-39 (546)
77 TIGR01292 TRX_reduct thioredox 98.0 8.1E-06 1.7E-10 68.7 4.9 33 43-76 1-33 (300)
78 TIGR02053 MerA mercuric reduct 98.0 8.5E-06 1.8E-10 73.9 5.0 33 43-76 1-33 (463)
79 PRK06115 dihydrolipoamide dehy 98.0 8.7E-06 1.9E-10 74.2 5.0 32 42-74 3-34 (466)
80 PTZ00367 squalene epoxidase; P 98.0 1E-05 2.3E-10 75.7 5.5 35 41-76 32-66 (567)
81 PLN02464 glycerol-3-phosphate 98.0 1.1E-05 2.3E-10 76.5 5.4 36 41-77 70-105 (627)
82 PRK08849 2-octaprenyl-3-methyl 98.0 1E-05 2.2E-10 71.6 5.0 34 42-76 3-36 (384)
83 PRK05732 2-octaprenyl-6-methox 97.9 1.1E-05 2.3E-10 71.1 4.9 34 41-75 2-38 (395)
84 PRK07333 2-octaprenyl-6-methox 97.9 1E-05 2.2E-10 71.5 4.7 35 42-77 1-37 (403)
85 PRK07818 dihydrolipoamide dehy 97.9 1.1E-05 2.3E-10 73.4 5.0 33 42-75 4-36 (466)
86 KOG0029|consensus 97.9 1.2E-05 2.6E-10 74.2 5.3 40 38-78 11-50 (501)
87 PRK08244 hypothetical protein; 97.9 1.1E-05 2.5E-10 73.7 5.1 36 42-78 2-37 (493)
88 PRK12834 putative FAD-binding 97.9 1.2E-05 2.6E-10 74.8 5.2 35 41-76 3-37 (549)
89 PTZ00139 Succinate dehydrogena 97.9 1.2E-05 2.6E-10 76.0 5.2 39 39-78 26-64 (617)
90 PRK13748 putative mercuric red 97.9 1.2E-05 2.5E-10 74.7 5.1 35 41-76 97-131 (561)
91 PRK07190 hypothetical protein; 97.9 1.2E-05 2.6E-10 73.9 5.0 36 41-77 4-39 (487)
92 PLN02661 Putative thiazole syn 97.9 1.1E-05 2.4E-10 71.3 4.6 37 42-78 92-128 (357)
93 TIGR01789 lycopene_cycl lycope 97.9 1.2E-05 2.6E-10 71.4 4.8 34 44-77 1-35 (370)
94 TIGR01984 UbiH 2-polyprenyl-6- 97.9 1.2E-05 2.6E-10 70.5 4.8 34 44-78 1-35 (382)
95 PLN02576 protoporphyrinogen ox 97.9 1.8E-05 3.9E-10 72.2 6.0 39 39-78 9-48 (496)
96 PRK11445 putative oxidoreducta 97.9 1.1E-05 2.5E-10 70.6 4.5 34 42-77 1-34 (351)
97 PRK08294 phenol 2-monooxygenas 97.9 2.8E-05 6E-10 73.7 7.3 41 37-77 27-67 (634)
98 PRK06467 dihydrolipoamide dehy 97.9 1.5E-05 3.2E-10 72.9 5.1 35 41-76 3-37 (471)
99 TIGR03143 AhpF_homolog putativ 97.9 1.5E-05 3.3E-10 74.3 5.1 36 41-77 3-38 (555)
100 PRK12842 putative succinate de 97.9 1.8E-05 3.9E-10 74.1 5.6 38 40-78 7-44 (574)
101 PRK14694 putative mercuric red 97.9 1.8E-05 3.9E-10 72.1 5.5 35 41-76 5-39 (468)
102 TIGR01813 flavo_cyto_c flavocy 97.9 1.5E-05 3.3E-10 71.7 5.0 34 44-78 1-35 (439)
103 PRK12844 3-ketosteroid-delta-1 97.9 1.8E-05 3.9E-10 73.9 5.3 38 39-77 3-40 (557)
104 PRK06184 hypothetical protein; 97.9 1.8E-05 3.8E-10 72.6 5.2 37 41-78 2-38 (502)
105 PRK05257 malate:quinone oxidor 97.9 1.7E-05 3.8E-10 73.1 5.1 37 41-77 4-41 (494)
106 PRK08243 4-hydroxybenzoate 3-m 97.9 1.7E-05 3.7E-10 70.4 4.8 35 42-77 2-36 (392)
107 TIGR02733 desat_CrtD C-3',4' d 97.9 1.8E-05 3.9E-10 72.3 5.1 35 43-78 2-36 (492)
108 PRK06327 dihydrolipoamide dehy 97.9 1.7E-05 3.6E-10 72.5 4.9 33 41-74 3-35 (475)
109 PRK06854 adenylylsulfate reduc 97.9 2E-05 4.4E-10 74.3 5.5 38 40-77 9-47 (608)
110 COG0492 TrxB Thioredoxin reduc 97.9 1.9E-05 4.2E-10 68.6 4.9 35 41-76 2-37 (305)
111 TIGR01320 mal_quin_oxido malat 97.9 1.8E-05 3.9E-10 72.7 4.9 35 43-77 1-36 (483)
112 PLN02268 probable polyamine ox 97.9 2E-05 4.4E-10 70.7 5.1 35 44-79 2-36 (435)
113 PRK14727 putative mercuric red 97.9 2.9E-05 6.3E-10 71.0 6.3 38 38-76 12-49 (479)
114 COG0665 DadA Glycine/D-amino a 97.9 2.1E-05 4.5E-10 68.9 5.1 37 41-78 3-39 (387)
115 PRK08958 sdhA succinate dehydr 97.9 1.9E-05 4.1E-10 74.3 5.1 37 41-78 6-42 (588)
116 COG0654 UbiH 2-polyprenyl-6-me 97.9 1.8E-05 3.8E-10 70.3 4.7 33 42-75 2-34 (387)
117 PRK08850 2-octaprenyl-6-methox 97.9 1.9E-05 4E-10 70.3 4.8 33 42-75 4-36 (405)
118 TIGR01989 COQ6 Ubiquinone bios 97.9 1.6E-05 3.5E-10 71.7 4.4 34 43-76 1-37 (437)
119 PRK08132 FAD-dependent oxidore 97.8 2.3E-05 5E-10 72.7 5.5 39 38-77 19-57 (547)
120 PRK07208 hypothetical protein; 97.8 2.2E-05 4.8E-10 71.2 5.3 37 41-78 3-39 (479)
121 PLN00128 Succinate dehydrogena 97.8 2E-05 4.3E-10 74.8 5.1 39 39-78 47-85 (635)
122 PRK09078 sdhA succinate dehydr 97.8 2.1E-05 4.6E-10 74.0 5.2 36 41-77 11-46 (598)
123 PRK06617 2-octaprenyl-6-methox 97.8 1.9E-05 4.1E-10 69.7 4.6 33 43-76 2-34 (374)
124 PTZ00052 thioredoxin reductase 97.8 1.9E-05 4.2E-10 72.7 4.8 32 42-74 5-36 (499)
125 PRK13339 malate:quinone oxidor 97.8 2.3E-05 5E-10 72.4 5.2 35 40-74 4-39 (497)
126 PLN02676 polyamine oxidase 97.8 4.4E-05 9.5E-10 70.2 7.1 37 41-78 25-62 (487)
127 PRK07843 3-ketosteroid-delta-1 97.8 2.4E-05 5.2E-10 73.0 5.2 38 39-77 4-41 (557)
128 PRK07395 L-aspartate oxidase; 97.8 2.1E-05 4.5E-10 73.5 4.8 39 38-78 5-43 (553)
129 PRK07057 sdhA succinate dehydr 97.8 2.8E-05 6.1E-10 73.1 5.7 36 41-77 11-46 (591)
130 PRK07803 sdhA succinate dehydr 97.8 2.5E-05 5.4E-10 73.9 5.4 36 41-77 7-42 (626)
131 PRK06996 hypothetical protein; 97.8 2.4E-05 5.1E-10 69.6 4.9 37 39-76 8-48 (398)
132 PRK06452 sdhA succinate dehydr 97.8 2.1E-05 4.6E-10 73.5 4.8 36 41-77 4-39 (566)
133 PRK06834 hypothetical protein; 97.8 2.4E-05 5.1E-10 71.9 5.0 35 42-77 3-37 (488)
134 PRK01747 mnmC bifunctional tRN 97.8 2.2E-05 4.8E-10 74.6 4.9 34 42-76 260-293 (662)
135 PLN02507 glutathione reductase 97.8 2.2E-05 4.8E-10 72.3 4.8 33 41-74 24-56 (499)
136 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 2.5E-05 5.5E-10 69.5 4.9 35 42-77 2-36 (390)
137 PRK12845 3-ketosteroid-delta-1 97.8 3.5E-05 7.5E-10 72.2 5.9 39 38-78 12-50 (564)
138 PRK06847 hypothetical protein; 97.8 2.9E-05 6.3E-10 67.9 5.1 36 41-77 3-38 (375)
139 PRK07588 hypothetical protein; 97.8 2.6E-05 5.7E-10 68.9 4.8 34 44-78 2-35 (391)
140 PRK06126 hypothetical protein; 97.8 3.4E-05 7.3E-10 71.4 5.7 37 40-77 5-41 (545)
141 PRK08275 putative oxidoreducta 97.8 2.7E-05 5.8E-10 72.6 5.0 37 41-77 8-45 (554)
142 PRK10262 thioredoxin reductase 97.8 3.3E-05 7.1E-10 66.6 5.2 36 39-75 3-38 (321)
143 PRK00711 D-amino acid dehydrog 97.8 2.8E-05 6.1E-10 69.0 4.9 33 44-77 2-34 (416)
144 PRK11883 protoporphyrinogen ox 97.8 2.7E-05 5.8E-10 69.6 4.8 34 44-78 2-37 (451)
145 TIGR01423 trypano_reduc trypan 97.8 2.5E-05 5.5E-10 71.8 4.7 34 41-75 2-36 (486)
146 PRK06183 mhpA 3-(3-hydroxyphen 97.8 3.1E-05 6.7E-10 71.7 5.3 38 40-78 8-45 (538)
147 PLN02815 L-aspartate oxidase 97.8 3.2E-05 6.9E-10 72.9 5.4 38 39-78 26-63 (594)
148 PTZ00383 malate:quinone oxidor 97.8 4E-05 8.8E-10 70.7 5.8 36 41-76 44-80 (497)
149 PRK06175 L-aspartate oxidase; 97.8 2.4E-05 5.1E-10 70.9 4.2 36 41-78 3-38 (433)
150 TIGR00562 proto_IX_ox protopor 97.8 3E-05 6.5E-10 69.9 4.9 36 42-78 2-41 (462)
151 PRK06753 hypothetical protein; 97.8 3.1E-05 6.7E-10 67.8 4.8 34 44-78 2-35 (373)
152 PLN02546 glutathione reductase 97.8 2.9E-05 6.3E-10 72.6 4.8 32 42-74 79-110 (558)
153 PRK07233 hypothetical protein; 97.8 3.4E-05 7.4E-10 68.4 5.0 34 44-78 1-34 (434)
154 PRK08401 L-aspartate oxidase; 97.8 3.2E-05 6.9E-10 70.6 4.9 34 43-77 2-35 (466)
155 PRK12843 putative FAD-binding 97.8 4.6E-05 9.9E-10 71.5 5.9 40 37-77 11-50 (578)
156 TIGR02734 crtI_fam phytoene de 97.7 3E-05 6.5E-10 70.9 4.5 33 45-78 1-33 (502)
157 PRK07573 sdhA succinate dehydr 97.7 3.6E-05 7.7E-10 73.1 5.0 36 41-77 34-69 (640)
158 PF07992 Pyr_redox_2: Pyridine 97.7 4.6E-05 1E-09 60.5 4.8 32 44-76 1-32 (201)
159 TIGR01812 sdhA_frdA_Gneg succi 97.7 3.6E-05 7.8E-10 71.8 4.8 33 44-77 1-33 (566)
160 COG3573 Predicted oxidoreducta 97.7 4.4E-05 9.6E-10 67.2 4.9 38 40-78 3-40 (552)
161 PRK06134 putative FAD-binding 97.7 5.7E-05 1.2E-09 70.8 6.1 39 38-77 8-46 (581)
162 PRK05329 anaerobic glycerol-3- 97.7 4.2E-05 9.1E-10 69.3 4.9 34 42-76 2-35 (422)
163 COG1249 Lpd Pyruvate/2-oxoglut 97.7 4E-05 8.6E-10 70.0 4.8 35 41-76 3-37 (454)
164 PTZ00153 lipoamide dehydrogena 97.7 3.9E-05 8.5E-10 73.1 4.9 33 42-75 116-148 (659)
165 PRK05945 sdhA succinate dehydr 97.7 3.5E-05 7.7E-10 72.1 4.6 36 42-77 3-39 (575)
166 PRK07236 hypothetical protein; 97.7 4.5E-05 9.8E-10 67.4 5.0 36 41-77 5-40 (386)
167 PRK08626 fumarate reductase fl 97.7 3.8E-05 8.2E-10 73.2 4.7 37 41-78 4-40 (657)
168 PRK06069 sdhA succinate dehydr 97.7 3.8E-05 8.3E-10 71.9 4.6 37 41-78 4-43 (577)
169 PRK08641 sdhA succinate dehydr 97.7 4.2E-05 9.1E-10 71.9 4.8 36 42-78 3-38 (589)
170 PRK06263 sdhA succinate dehydr 97.7 4.3E-05 9.3E-10 71.0 4.5 35 41-77 6-40 (543)
171 PRK08163 salicylate hydroxylas 97.7 5.4E-05 1.2E-09 66.8 5.0 35 42-77 4-38 (396)
172 KOG2415|consensus 97.7 4.5E-05 9.7E-10 68.7 4.3 38 41-78 75-117 (621)
173 PF13738 Pyr_redox_3: Pyridine 97.7 5.6E-05 1.2E-09 60.3 4.5 32 46-78 1-33 (203)
174 COG1231 Monoamine oxidase [Ami 97.6 7.6E-05 1.7E-09 67.5 5.4 38 40-78 5-42 (450)
175 PRK07538 hypothetical protein; 97.6 5.9E-05 1.3E-09 67.3 4.7 33 44-77 2-34 (413)
176 PRK12839 hypothetical protein; 97.6 6.8E-05 1.5E-09 70.3 5.2 36 41-77 7-42 (572)
177 TIGR01438 TGR thioredoxin and 97.6 6.3E-05 1.4E-09 69.1 4.8 33 42-75 2-34 (484)
178 TIGR00551 nadB L-aspartate oxi 97.6 6.6E-05 1.4E-09 68.9 4.8 35 42-78 2-36 (488)
179 PRK13800 putative oxidoreducta 97.6 8E-05 1.7E-09 73.2 5.6 37 40-77 11-47 (897)
180 PRK09077 L-aspartate oxidase; 97.6 6.8E-05 1.5E-09 69.7 4.7 36 41-78 7-42 (536)
181 PRK08205 sdhA succinate dehydr 97.6 6.8E-05 1.5E-09 70.4 4.7 35 41-77 4-38 (583)
182 COG0579 Predicted dehydrogenas 97.6 9.3E-05 2E-09 67.1 4.9 38 41-78 2-40 (429)
183 PRK09231 fumarate reductase fl 97.6 8.4E-05 1.8E-09 69.8 4.7 38 41-78 3-41 (582)
184 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00011 2.4E-09 66.7 4.9 35 43-78 3-37 (436)
185 TIGR02061 aprA adenosine phosp 97.5 0.0001 2.2E-09 69.7 4.8 34 44-77 1-37 (614)
186 TIGR01176 fum_red_Fp fumarate 97.5 9.1E-05 2E-09 69.6 4.5 37 42-78 3-40 (580)
187 PRK15317 alkyl hydroperoxide r 97.5 0.00013 2.8E-09 67.5 5.3 34 40-74 209-242 (517)
188 PRK08071 L-aspartate oxidase; 97.5 9.2E-05 2E-09 68.4 4.3 35 42-78 3-37 (510)
189 PRK05868 hypothetical protein; 97.5 0.00011 2.5E-09 64.9 4.8 34 44-78 3-36 (372)
190 COG2072 TrkA Predicted flavopr 97.5 0.00013 2.8E-09 66.5 5.1 39 39-78 5-44 (443)
191 PRK12416 protoporphyrinogen ox 97.5 0.00012 2.6E-09 66.2 4.9 35 44-78 3-42 (463)
192 TIGR03140 AhpF alkyl hydropero 97.5 0.00013 2.8E-09 67.4 5.0 34 40-74 210-243 (515)
193 PLN02568 polyamine oxidase 97.5 0.00014 3.1E-09 67.7 5.3 37 41-78 4-45 (539)
194 COG3380 Predicted NAD/FAD-depe 97.5 0.00014 3.1E-09 62.2 4.8 34 44-78 3-36 (331)
195 PTZ00306 NADH-dependent fumara 97.5 0.00012 2.7E-09 73.8 5.1 37 41-78 408-444 (1167)
196 PLN02172 flavin-containing mon 97.5 0.00016 3.4E-09 66.2 5.2 37 41-78 9-45 (461)
197 TIGR02731 phytoene_desat phyto 97.5 0.00015 3.3E-09 65.4 4.9 34 44-78 1-34 (453)
198 TIGR03378 glycerol3P_GlpB glyc 97.4 0.00018 3.8E-09 65.2 4.8 34 43-77 1-34 (419)
199 COG1053 SdhA Succinate dehydro 97.4 0.00017 3.7E-09 67.6 4.8 38 40-78 4-41 (562)
200 PF01134 GIDA: Glucose inhibit 97.4 0.00016 3.4E-09 65.0 4.3 28 44-72 1-28 (392)
201 PRK06475 salicylate hydroxylas 97.4 0.00021 4.5E-09 63.6 4.9 34 43-77 3-36 (400)
202 PRK06912 acoL dihydrolipoamide 97.4 0.00021 4.5E-09 65.0 4.8 33 44-77 2-34 (458)
203 COG0578 GlpA Glycerol-3-phosph 97.4 0.00023 4.9E-09 66.1 5.0 37 41-78 11-47 (532)
204 TIGR01372 soxA sarcosine oxida 97.4 0.00021 4.5E-09 71.0 5.0 37 41-78 162-198 (985)
205 PRK07846 mycothione reductase; 97.4 0.00021 4.5E-09 65.0 4.5 32 42-76 1-32 (451)
206 COG3075 GlpB Anaerobic glycero 97.3 0.00026 5.7E-09 62.1 4.5 36 42-78 2-37 (421)
207 PLN02927 antheraxanthin epoxid 97.3 0.00038 8.2E-09 66.5 5.9 36 40-76 79-114 (668)
208 TIGR03452 mycothione_red mycot 97.3 0.00025 5.5E-09 64.4 4.6 32 42-76 2-33 (452)
209 PRK07512 L-aspartate oxidase; 97.3 0.00027 5.9E-09 65.4 4.5 35 40-77 7-41 (513)
210 TIGR00275 flavoprotein, HI0933 97.3 0.00018 3.9E-09 64.5 3.2 32 46-78 1-32 (400)
211 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00032 6.8E-09 63.8 4.8 33 44-77 2-34 (433)
212 TIGR00136 gidA glucose-inhibit 97.3 0.00032 6.9E-09 66.2 4.8 33 43-76 1-33 (617)
213 TIGR03315 Se_ygfK putative sel 97.3 0.00045 9.7E-09 68.6 5.9 36 41-77 536-571 (1012)
214 PRK12831 putative oxidoreducta 97.3 0.00046 1E-08 63.1 5.6 36 41-77 139-174 (464)
215 PF00996 GDI: GDP dissociation 97.2 0.00042 9.2E-09 63.1 5.1 39 40-79 2-40 (438)
216 KOG2820|consensus 97.2 0.00033 7.2E-09 61.6 3.8 36 41-77 6-41 (399)
217 TIGR01811 sdhA_Bsu succinate d 97.2 0.00036 7.8E-09 65.9 4.2 31 45-76 1-31 (603)
218 TIGR03219 salicylate_mono sali 97.2 0.00051 1.1E-08 61.3 4.8 34 44-78 2-36 (414)
219 PRK12810 gltD glutamate syntha 97.2 0.00066 1.4E-08 62.0 5.6 37 41-78 142-178 (471)
220 COG3349 Uncharacterized conser 97.2 0.0005 1.1E-08 63.1 4.5 34 44-78 2-35 (485)
221 PF04820 Trp_halogenase: Trypt 97.1 0.00046 1E-08 63.0 4.1 34 44-78 1-37 (454)
222 TIGR01316 gltA glutamate synth 97.1 0.00065 1.4E-08 61.7 5.0 36 41-77 132-167 (449)
223 PLN02612 phytoene desaturase 97.1 0.00071 1.5E-08 63.4 5.4 35 42-77 93-127 (567)
224 PF00070 Pyr_redox: Pyridine n 97.1 0.0013 2.8E-08 45.4 5.3 33 45-78 2-34 (80)
225 PLN02328 lysine-specific histo 97.1 0.00079 1.7E-08 65.5 5.6 38 40-78 236-273 (808)
226 PLN02529 lysine-specific histo 97.1 0.00081 1.8E-08 64.9 5.5 38 40-78 158-195 (738)
227 PRK07845 flavoprotein disulfid 97.1 0.00076 1.6E-08 61.5 5.0 32 44-76 3-34 (466)
228 TIGR02732 zeta_caro_desat caro 97.1 0.00079 1.7E-08 61.7 4.9 34 44-78 1-34 (474)
229 PRK12769 putative oxidoreducta 97.0 0.0012 2.7E-08 62.7 5.9 36 41-77 326-361 (654)
230 PRK11749 dihydropyrimidine deh 97.0 0.0011 2.3E-08 60.3 5.2 36 41-77 139-174 (457)
231 PRK12775 putative trifunctiona 97.0 0.0011 2.4E-08 66.1 5.5 37 41-78 429-465 (1006)
232 PLN02852 ferredoxin-NADP+ redu 96.9 0.0018 3.9E-08 59.9 6.3 39 40-78 24-63 (491)
233 COG1232 HemY Protoporphyrinoge 96.9 0.001 2.2E-08 60.7 4.5 34 44-78 2-37 (444)
234 KOG3855|consensus 96.9 0.00092 2E-08 60.2 4.1 38 40-77 34-74 (481)
235 KOG1399|consensus 96.9 0.00097 2.1E-08 60.9 4.4 36 42-78 6-41 (448)
236 PRK12779 putative bifunctional 96.9 0.0011 2.3E-08 65.8 4.9 36 41-77 305-340 (944)
237 PRK08255 salicylyl-CoA 5-hydro 96.9 0.001 2.2E-08 64.5 4.7 34 44-77 2-36 (765)
238 KOG0685|consensus 96.9 0.0014 3E-08 59.8 5.1 41 39-79 18-58 (498)
239 PRK12778 putative bifunctional 96.9 0.0014 3E-08 63.3 5.3 35 41-76 430-464 (752)
240 PRK13977 myosin-cross-reactive 96.9 0.0019 4.1E-08 60.6 5.8 38 41-78 21-61 (576)
241 KOG2665|consensus 96.9 0.00086 1.9E-08 58.7 3.2 40 39-78 45-85 (453)
242 PRK09853 putative selenate red 96.8 0.0019 4.2E-08 64.2 5.9 36 41-77 538-573 (1019)
243 KOG2614|consensus 96.8 0.0016 3.4E-08 58.5 4.8 35 42-77 2-36 (420)
244 PLN02487 zeta-carotene desatur 96.8 0.0025 5.4E-08 59.9 5.9 36 42-78 75-110 (569)
245 TIGR02485 CobZ_N-term precorri 96.8 0.0011 2.3E-08 59.8 3.3 30 47-77 1-30 (432)
246 PLN03000 amine oxidase 96.7 0.0022 4.7E-08 62.9 5.2 37 41-78 183-219 (881)
247 KOG0405|consensus 96.7 0.0028 6E-08 56.3 5.2 35 41-76 19-53 (478)
248 PRK12770 putative glutamate sy 96.7 0.0025 5.3E-08 55.9 4.8 36 42-78 18-53 (352)
249 PRK12814 putative NADPH-depend 96.7 0.0025 5.5E-08 60.7 5.2 36 41-77 192-227 (652)
250 COG0445 GidA Flavin-dependent 96.6 0.0017 3.7E-08 60.3 3.6 36 41-77 3-38 (621)
251 TIGR01318 gltD_gamma_fam gluta 96.6 0.0039 8.4E-08 57.1 5.9 36 41-77 140-175 (467)
252 KOG4716|consensus 96.6 0.0023 4.9E-08 56.7 4.1 35 41-76 18-52 (503)
253 PLN02976 amine oxidase 96.6 0.0032 7E-08 64.5 5.5 40 38-78 689-728 (1713)
254 KOG2853|consensus 96.6 0.0026 5.5E-08 56.4 4.2 42 37-78 81-125 (509)
255 PRK12809 putative oxidoreducta 96.5 0.005 1.1E-07 58.5 5.8 36 41-77 309-344 (639)
256 PF06039 Mqo: Malate:quinone o 96.5 0.0038 8.2E-08 57.1 4.8 38 41-78 2-40 (488)
257 TIGR01317 GOGAT_sm_gam glutama 96.5 0.005 1.1E-07 56.7 5.6 35 42-77 143-177 (485)
258 KOG2960|consensus 96.4 0.0008 1.7E-08 56.1 0.2 35 42-76 76-111 (328)
259 PTZ00188 adrenodoxin reductase 96.4 0.005 1.1E-07 57.0 4.9 37 42-78 39-75 (506)
260 PRK09564 coenzyme A disulfide 96.3 0.0054 1.2E-07 55.2 4.9 35 44-78 2-37 (444)
261 KOG1335|consensus 96.3 0.0045 9.8E-08 55.5 4.2 35 41-76 38-72 (506)
262 PRK06567 putative bifunctional 96.3 0.0045 9.7E-08 61.4 4.5 34 41-75 382-415 (1028)
263 PF00743 FMO-like: Flavin-bind 96.3 0.0059 1.3E-07 57.0 4.9 34 44-78 3-36 (531)
264 PRK13512 coenzyme A disulfide 96.2 0.0063 1.4E-07 55.1 4.8 35 44-78 3-38 (438)
265 COG1148 HdrA Heterodisulfide r 96.2 0.0067 1.5E-07 55.8 4.8 36 42-78 124-159 (622)
266 PRK13984 putative oxidoreducta 96.2 0.0085 1.8E-07 56.4 5.8 37 40-77 281-317 (604)
267 COG0029 NadB Aspartate oxidase 96.2 0.0042 9.2E-08 57.0 3.5 33 44-78 9-41 (518)
268 KOG4254|consensus 96.1 0.0054 1.2E-07 56.0 3.6 38 40-78 12-49 (561)
269 PRK12771 putative glutamate sy 96.1 0.0082 1.8E-07 56.1 4.9 36 41-77 136-171 (564)
270 PF13434 K_oxygenase: L-lysine 96.0 0.0068 1.5E-07 53.4 3.9 38 41-78 1-38 (341)
271 PRK09754 phenylpropionate diox 96.0 0.0091 2E-07 53.2 4.7 36 43-78 4-40 (396)
272 PRK09897 hypothetical protein; 95.9 0.011 2.3E-07 55.3 4.8 35 43-77 2-37 (534)
273 KOG4405|consensus 95.9 0.0089 1.9E-07 54.0 4.0 42 37-79 3-44 (547)
274 PTZ00318 NADH dehydrogenase-li 95.9 0.012 2.6E-07 53.0 4.9 38 40-78 8-45 (424)
275 KOG2311|consensus 95.9 0.0081 1.8E-07 55.3 3.6 37 40-77 26-62 (679)
276 KOG0042|consensus 95.8 0.0041 9E-08 57.8 1.6 36 42-78 67-102 (680)
277 PRK04965 NADH:flavorubredoxin 95.8 0.015 3.2E-07 51.4 4.9 35 43-77 3-38 (377)
278 TIGR03169 Nterm_to_SelD pyridi 95.7 0.014 3E-07 51.0 4.4 35 44-78 1-37 (364)
279 COG1206 Gid NAD(FAD)-utilizing 95.6 0.015 3.3E-07 51.3 4.2 34 44-78 5-38 (439)
280 KOG3851|consensus 95.5 0.02 4.3E-07 50.5 4.6 43 36-78 33-76 (446)
281 KOG1276|consensus 95.4 0.025 5.3E-07 51.4 4.7 39 40-78 9-48 (491)
282 COG5044 MRS6 RAB proteins gera 95.3 0.031 6.6E-07 49.9 5.1 38 40-78 4-41 (434)
283 COG2509 Uncharacterized FAD-de 95.3 0.023 5E-07 51.9 4.3 39 41-79 17-59 (486)
284 COG2907 Predicted NAD/FAD-bind 95.2 0.022 4.9E-07 50.6 3.9 36 41-78 7-42 (447)
285 COG3634 AhpF Alkyl hydroperoxi 95.2 0.013 2.8E-07 52.2 2.4 35 39-74 208-243 (520)
286 PF13454 NAD_binding_9: FAD-NA 95.1 0.028 6.1E-07 43.7 4.0 31 46-76 1-35 (156)
287 COG0446 HcaD Uncharacterized N 95.0 0.037 7.9E-07 48.3 4.8 35 43-78 137-171 (415)
288 PF02558 ApbA: Ketopantoate re 95.0 0.041 8.8E-07 42.0 4.4 31 45-76 1-31 (151)
289 COG0493 GltD NADPH-dependent g 94.8 0.031 6.6E-07 51.3 3.9 35 43-78 124-158 (457)
290 KOG2844|consensus 94.7 0.042 9E-07 52.5 4.6 38 37-75 34-72 (856)
291 KOG2755|consensus 94.5 0.03 6.5E-07 48.0 2.8 34 44-77 1-35 (334)
292 COG0569 TrkA K+ transport syst 94.4 0.06 1.3E-06 44.7 4.4 34 44-78 2-35 (225)
293 KOG1439|consensus 94.1 0.028 6E-07 50.6 1.8 37 41-78 3-39 (440)
294 KOG1800|consensus 94.0 0.075 1.6E-06 47.8 4.4 35 44-78 22-57 (468)
295 KOG2404|consensus 93.7 0.08 1.7E-06 46.9 3.9 34 44-78 11-44 (477)
296 PRK09754 phenylpropionate diox 93.6 0.12 2.5E-06 46.1 5.0 34 44-78 146-179 (396)
297 PRK04965 NADH:flavorubredoxin 93.6 0.12 2.6E-06 45.6 4.9 34 43-77 142-175 (377)
298 COG1252 Ndh NADH dehydrogenase 93.5 0.099 2.1E-06 47.3 4.3 36 43-78 4-40 (405)
299 PRK05976 dihydrolipoamide dehy 93.4 0.12 2.6E-06 47.1 4.9 34 44-78 182-215 (472)
300 COG1252 Ndh NADH dehydrogenase 93.3 0.073 1.6E-06 48.1 3.1 38 41-78 154-203 (405)
301 PRK07251 pyridine nucleotide-d 93.2 0.15 3.2E-06 46.0 5.0 34 44-78 159-192 (438)
302 PF01210 NAD_Gly3P_dh_N: NAD-d 93.1 0.14 3.1E-06 39.8 4.2 31 45-76 2-32 (157)
303 PRK05708 2-dehydropantoate 2-r 93.0 0.15 3.3E-06 44.0 4.5 32 44-76 4-35 (305)
304 TIGR01350 lipoamide_DH dihydro 92.8 0.17 3.7E-06 45.7 4.8 35 43-78 171-205 (461)
305 PRK06912 acoL dihydrolipoamide 92.7 0.19 4.1E-06 45.6 5.1 34 44-78 172-205 (458)
306 PRK06249 2-dehydropantoate 2-r 92.7 0.2 4.3E-06 43.3 4.9 32 44-76 7-38 (313)
307 PF02737 3HCDH_N: 3-hydroxyacy 92.7 0.21 4.5E-06 40.0 4.6 32 45-77 2-33 (180)
308 PRK07846 mycothione reductase; 92.5 0.21 4.5E-06 45.5 5.0 35 43-78 167-201 (451)
309 PRK06467 dihydrolipoamide dehy 92.4 0.2 4.4E-06 45.8 4.8 34 44-78 176-209 (471)
310 TIGR02053 MerA mercuric reduct 92.4 0.21 4.6E-06 45.3 4.9 34 43-77 167-200 (463)
311 TIGR02374 nitri_red_nirB nitri 92.3 0.18 3.9E-06 49.3 4.6 34 45-78 1-36 (785)
312 PRK14989 nitrite reductase sub 92.3 0.22 4.7E-06 49.1 5.2 35 44-78 5-42 (847)
313 PRK12921 2-dehydropantoate 2-r 92.3 0.21 4.6E-06 42.5 4.5 29 45-74 3-31 (305)
314 TIGR03385 CoA_CoA_reduc CoA-di 92.2 0.23 5E-06 44.5 4.8 33 44-77 139-171 (427)
315 PRK06522 2-dehydropantoate 2-r 92.2 0.24 5.2E-06 42.0 4.7 30 45-75 3-32 (304)
316 TIGR01421 gluta_reduc_1 glutat 92.1 0.23 5E-06 45.1 4.8 33 44-77 168-200 (450)
317 PF02254 TrkA_N: TrkA-N domain 92.1 0.33 7.2E-06 35.1 4.8 32 45-77 1-32 (116)
318 COG4529 Uncharacterized protei 92.1 0.22 4.7E-06 45.8 4.5 36 43-78 2-39 (474)
319 PRK06370 mercuric reductase; V 91.9 0.27 5.8E-06 44.7 4.9 34 44-78 173-206 (463)
320 PRK06115 dihydrolipoamide dehy 91.9 0.28 6.1E-06 44.7 5.1 34 44-78 176-209 (466)
321 PF13738 Pyr_redox_3: Pyridine 91.9 0.26 5.6E-06 39.0 4.3 33 43-76 168-200 (203)
322 PRK06416 dihydrolipoamide dehy 91.8 0.28 6E-06 44.5 4.9 34 44-78 174-207 (462)
323 PRK05249 soluble pyridine nucl 91.8 0.28 6.2E-06 44.3 5.0 34 44-78 177-210 (461)
324 PRK07818 dihydrolipoamide dehy 91.8 0.28 6E-06 44.7 4.9 34 44-78 174-207 (466)
325 PRK13512 coenzyme A disulfide 91.7 0.26 5.7E-06 44.5 4.6 33 44-77 150-182 (438)
326 KOG0399|consensus 91.6 0.23 5E-06 50.3 4.3 36 42-78 1785-1820(2142)
327 PRK06292 dihydrolipoamide dehy 91.4 0.33 7.2E-06 43.9 4.9 34 44-78 171-204 (460)
328 KOG0404|consensus 91.2 0.24 5.2E-06 41.9 3.5 33 44-77 10-42 (322)
329 PF01593 Amino_oxidase: Flavin 91.0 0.28 6.1E-06 42.2 4.0 26 52-78 1-26 (450)
330 PRK09564 coenzyme A disulfide 90.9 0.38 8.3E-06 43.2 4.8 34 43-77 150-183 (444)
331 PRK06129 3-hydroxyacyl-CoA deh 90.8 0.36 7.7E-06 41.7 4.4 32 44-76 4-35 (308)
332 TIGR03452 mycothione_red mycot 90.8 0.4 8.6E-06 43.6 4.9 33 44-77 171-203 (452)
333 TIGR01424 gluta_reduc_2 glutat 90.7 0.42 9.1E-06 43.3 4.9 34 44-78 168-201 (446)
334 PF03721 UDPG_MGDP_dh_N: UDP-g 90.7 0.36 7.9E-06 38.8 4.0 32 45-77 3-34 (185)
335 PRK08293 3-hydroxybutyryl-CoA 90.6 0.43 9.3E-06 40.7 4.7 32 44-76 5-36 (287)
336 TIGR01292 TRX_reduct thioredox 90.4 0.45 9.7E-06 39.7 4.5 34 43-77 142-175 (300)
337 PRK06327 dihydrolipoamide dehy 90.4 0.47 1E-05 43.3 5.0 34 44-78 185-218 (475)
338 COG3486 IucD Lysine/ornithine 90.3 0.37 7.9E-06 43.7 4.0 38 41-78 4-41 (436)
339 COG1249 Lpd Pyruvate/2-oxoglut 90.1 0.49 1.1E-05 43.5 4.9 34 44-78 175-208 (454)
340 PRK06116 glutathione reductase 90.1 0.5 1.1E-05 42.7 4.9 33 44-77 169-201 (450)
341 PRK01438 murD UDP-N-acetylmura 90.1 0.5 1.1E-05 43.1 4.9 32 44-76 18-49 (480)
342 PRK07845 flavoprotein disulfid 90.0 0.54 1.2E-05 42.9 5.0 34 44-78 179-212 (466)
343 TIGR03140 AhpF alkyl hydropero 89.8 0.5 1.1E-05 43.8 4.7 33 44-77 354-386 (515)
344 PRK09260 3-hydroxybutyryl-CoA 89.7 0.53 1.1E-05 40.1 4.5 32 45-77 4-35 (288)
345 TIGR03143 AhpF_homolog putativ 89.7 0.5 1.1E-05 44.2 4.6 34 43-77 144-177 (555)
346 PRK08229 2-dehydropantoate 2-r 89.7 0.52 1.1E-05 40.9 4.5 32 44-76 4-35 (341)
347 PTZ00318 NADH dehydrogenase-li 89.6 0.58 1.3E-05 42.1 4.9 35 44-78 175-222 (424)
348 PRK08010 pyridine nucleotide-d 89.6 0.61 1.3E-05 42.0 5.0 34 44-78 160-193 (441)
349 PTZ00153 lipoamide dehydrogena 89.5 0.57 1.2E-05 45.0 5.0 34 44-78 314-347 (659)
350 PRK10262 thioredoxin reductase 89.5 0.58 1.3E-05 40.2 4.6 33 44-77 148-180 (321)
351 PRK14620 NAD(P)H-dependent gly 89.4 0.6 1.3E-05 40.4 4.7 31 45-76 3-33 (326)
352 PLN02507 glutathione reductase 89.3 0.61 1.3E-05 43.1 4.9 33 44-77 205-237 (499)
353 PRK13748 putative mercuric red 89.3 0.6 1.3E-05 43.4 4.8 32 44-76 272-303 (561)
354 PRK15317 alkyl hydroperoxide r 89.3 0.58 1.3E-05 43.3 4.7 34 44-78 353-386 (517)
355 PRK14694 putative mercuric red 89.2 0.65 1.4E-05 42.3 5.0 32 44-76 180-211 (468)
356 TIGR02374 nitri_red_nirB nitri 89.2 0.57 1.2E-05 45.8 4.8 34 44-78 142-175 (785)
357 COG1893 ApbA Ketopantoate redu 89.2 0.53 1.1E-05 40.9 4.1 32 45-77 3-34 (307)
358 PRK06719 precorrin-2 dehydroge 88.8 0.78 1.7E-05 35.9 4.5 30 43-73 14-43 (157)
359 PRK02705 murD UDP-N-acetylmura 88.6 0.7 1.5E-05 41.8 4.7 32 45-77 3-34 (459)
360 PLN02546 glutathione reductase 88.5 0.73 1.6E-05 43.4 4.9 33 44-77 254-286 (558)
361 PRK07530 3-hydroxybutyryl-CoA 88.4 0.79 1.7E-05 39.1 4.7 32 44-76 6-37 (292)
362 PRK14727 putative mercuric red 88.4 0.76 1.6E-05 42.1 4.8 32 44-76 190-221 (479)
363 PRK06035 3-hydroxyacyl-CoA deh 88.4 0.79 1.7E-05 39.1 4.6 32 44-76 5-36 (291)
364 PRK07066 3-hydroxybutyryl-CoA 88.3 0.8 1.7E-05 40.2 4.7 32 44-76 9-40 (321)
365 PF06100 Strep_67kDa_ant: Stre 88.2 0.61 1.3E-05 43.2 4.0 35 43-77 3-40 (500)
366 PRK04148 hypothetical protein; 88.2 0.56 1.2E-05 36.1 3.2 32 44-77 19-50 (134)
367 PRK07819 3-hydroxybutyryl-CoA 88.0 0.85 1.8E-05 39.1 4.6 33 44-77 7-39 (286)
368 PTZ00058 glutathione reductase 87.9 0.77 1.7E-05 43.2 4.6 33 44-77 239-271 (561)
369 PRK14618 NAD(P)H-dependent gly 87.8 0.88 1.9E-05 39.5 4.7 32 44-76 6-37 (328)
370 PRK06718 precorrin-2 dehydroge 87.8 0.94 2E-05 36.9 4.5 32 43-75 11-42 (202)
371 PRK14989 nitrite reductase sub 87.7 0.83 1.8E-05 45.1 4.9 33 44-77 147-179 (847)
372 PRK12770 putative glutamate sy 87.6 0.88 1.9E-05 39.8 4.6 32 44-76 174-206 (352)
373 COG1748 LYS9 Saccharopine dehy 87.6 0.87 1.9E-05 41.1 4.5 34 44-77 3-36 (389)
374 PRK14106 murD UDP-N-acetylmura 87.5 0.89 1.9E-05 41.0 4.7 33 43-76 6-38 (450)
375 PRK12475 thiamine/molybdopteri 87.4 0.94 2E-05 40.0 4.6 35 42-77 24-59 (338)
376 PRK05808 3-hydroxybutyryl-CoA 87.2 0.97 2.1E-05 38.3 4.5 31 44-75 5-35 (282)
377 PRK06130 3-hydroxybutyryl-CoA 87.1 1 2.3E-05 38.6 4.7 32 44-76 6-37 (311)
378 cd01075 NAD_bind_Leu_Phe_Val_D 86.9 1.2 2.5E-05 36.3 4.6 32 44-76 30-61 (200)
379 PRK00094 gpsA NAD(P)H-dependen 86.5 1.2 2.6E-05 38.1 4.7 32 44-76 3-34 (325)
380 TIGR01423 trypano_reduc trypan 86.4 1.2 2.5E-05 41.2 4.8 35 44-78 189-225 (486)
381 PF13241 NAD_binding_7: Putati 86.3 0.77 1.7E-05 33.2 2.9 33 42-75 7-39 (103)
382 PTZ00052 thioredoxin reductase 86.2 1.1 2.3E-05 41.4 4.5 31 44-75 184-214 (499)
383 PRK07688 thiamine/molybdopteri 86.2 1.3 2.8E-05 39.1 4.8 36 41-77 23-59 (339)
384 TIGR01438 TGR thioredoxin and 86.2 1.1 2.3E-05 41.4 4.4 31 44-75 182-212 (484)
385 KOG2495|consensus 86.1 0.41 8.9E-06 43.7 1.6 38 40-77 216-266 (491)
386 TIGR01316 gltA glutamate synth 86.0 1.3 2.8E-05 40.3 4.9 33 44-77 274-306 (449)
387 TIGR02354 thiF_fam2 thiamine b 85.8 1.4 2.9E-05 36.0 4.5 35 41-76 20-55 (200)
388 PLN02545 3-hydroxybutyryl-CoA 85.7 1.4 3E-05 37.7 4.7 31 45-76 7-37 (295)
389 cd01483 E1_enzyme_family Super 85.7 1.6 3.4E-05 33.1 4.5 33 45-78 2-35 (143)
390 PRK10669 putative cation:proto 85.6 1.2 2.6E-05 41.6 4.6 36 42-78 417-452 (558)
391 PRK15116 sulfur acceptor prote 85.6 1.4 3E-05 37.8 4.6 37 41-78 29-66 (268)
392 PF01488 Shikimate_DH: Shikima 85.4 1.8 3.9E-05 32.7 4.7 33 42-75 12-45 (135)
393 TIGR01470 cysG_Nterm siroheme 84.6 1.7 3.8E-05 35.5 4.5 31 44-75 11-41 (205)
394 TIGR01763 MalateDH_bact malate 84.4 1.7 3.7E-05 37.7 4.7 31 44-75 3-34 (305)
395 TIGR01915 npdG NADPH-dependent 84.3 1.8 4E-05 35.3 4.7 31 45-76 3-34 (219)
396 PRK09496 trkA potassium transp 84.3 1.5 3.3E-05 39.3 4.5 33 44-77 2-34 (453)
397 cd01487 E1_ThiF_like E1_ThiF_l 84.1 2 4.3E-05 34.1 4.6 32 45-77 2-34 (174)
398 TIGR03026 NDP-sugDHase nucleot 84.1 1.5 3.3E-05 39.4 4.4 32 45-77 3-34 (411)
399 PRK14619 NAD(P)H-dependent gly 84.0 1.7 3.8E-05 37.4 4.6 33 44-77 6-38 (308)
400 TIGR00518 alaDH alanine dehydr 83.6 1.9 4.1E-05 38.5 4.7 33 43-76 168-200 (370)
401 PRK07417 arogenate dehydrogena 83.3 1.8 3.9E-05 36.7 4.3 31 45-76 3-33 (279)
402 cd05311 NAD_bind_2_malic_enz N 83.1 1.9 4.2E-05 35.7 4.3 32 44-76 27-61 (226)
403 cd05191 NAD_bind_amino_acid_DH 83.1 2.9 6.4E-05 28.9 4.7 32 43-74 24-55 (86)
404 TIGR02356 adenyl_thiF thiazole 83.1 2.3 4.9E-05 34.6 4.6 36 41-77 20-56 (202)
405 PRK09496 trkA potassium transp 83.0 2 4.4E-05 38.5 4.8 34 43-77 232-265 (453)
406 COG1004 Ugd Predicted UDP-gluc 83.0 1.8 3.9E-05 39.2 4.3 34 44-78 2-35 (414)
407 PRK11064 wecC UDP-N-acetyl-D-m 82.9 1.9 4.1E-05 39.0 4.5 33 44-77 5-37 (415)
408 PRK12831 putative oxidoreducta 82.6 2.1 4.6E-05 39.2 4.7 33 44-77 283-315 (464)
409 PF03807 F420_oxidored: NADP o 82.4 3.2 7E-05 28.8 4.7 32 45-77 2-37 (96)
410 cd05292 LDH_2 A subgroup of L- 82.4 2.3 5E-05 36.8 4.7 33 44-77 2-36 (308)
411 PF00899 ThiF: ThiF family; I 82.4 3.4 7.3E-05 31.0 5.1 35 43-78 3-38 (135)
412 cd01080 NAD_bind_m-THF_DH_Cycl 82.2 2.6 5.7E-05 33.4 4.6 34 41-75 43-77 (168)
413 PLN02172 flavin-containing mon 82.1 1.7 3.6E-05 39.9 3.9 33 44-77 206-238 (461)
414 KOG2852|consensus 81.9 0.66 1.4E-05 40.6 1.1 35 43-77 11-50 (380)
415 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.8 2.2 4.8E-05 39.6 4.6 32 44-76 7-38 (503)
416 PRK02472 murD UDP-N-acetylmura 81.0 2.5 5.4E-05 38.1 4.6 31 45-76 8-38 (447)
417 cd05291 HicDH_like L-2-hydroxy 80.9 2.8 6.1E-05 36.1 4.7 32 45-77 3-36 (306)
418 PRK11730 fadB multifunctional 80.8 2.3 5E-05 41.3 4.5 34 43-77 314-347 (715)
419 TIGR02437 FadB fatty oxidation 80.7 2.3 5E-05 41.2 4.5 35 42-77 313-347 (714)
420 PF01118 Semialdhyde_dh: Semia 80.7 3.1 6.8E-05 30.6 4.3 33 45-77 2-35 (121)
421 PRK11749 dihydropyrimidine deh 80.7 2.8 6.1E-05 38.0 4.8 33 43-76 274-307 (457)
422 PLN02353 probable UDP-glucose 80.7 2.6 5.6E-05 39.0 4.6 34 44-77 3-37 (473)
423 TIGR02853 spore_dpaA dipicolin 80.6 2.8 6.1E-05 36.1 4.6 33 43-76 152-184 (287)
424 cd01339 LDH-like_MDH L-lactate 80.6 2.5 5.4E-05 36.3 4.3 32 45-77 1-33 (300)
425 PRK06223 malate dehydrogenase; 80.6 3 6.5E-05 35.8 4.7 32 44-76 4-36 (307)
426 PRK07531 bifunctional 3-hydrox 80.2 2.7 5.9E-05 38.8 4.6 32 44-76 6-37 (495)
427 cd00401 AdoHcyase S-adenosyl-L 80.1 2.9 6.4E-05 38.0 4.7 35 42-77 202-236 (413)
428 COG2072 TrkA Predicted flavopr 79.8 2.5 5.4E-05 38.6 4.2 35 43-78 176-210 (443)
429 PRK08268 3-hydroxy-acyl-CoA de 79.3 3.1 6.7E-05 38.7 4.6 33 44-77 9-41 (507)
430 PF03435 Saccharop_dh: Sacchar 79.1 2.7 5.8E-05 37.2 4.1 33 45-77 1-34 (386)
431 PRK03562 glutathione-regulated 78.8 2.9 6.2E-05 39.9 4.4 36 42-78 400-435 (621)
432 PTZ00082 L-lactate dehydrogena 78.8 4.1 8.9E-05 35.6 5.1 34 43-77 7-41 (321)
433 PF01262 AlaDh_PNT_C: Alanine 78.7 4.3 9.3E-05 31.8 4.7 34 42-76 20-53 (168)
434 PRK12549 shikimate 5-dehydroge 78.4 3.6 7.9E-05 35.3 4.6 33 43-76 128-161 (284)
435 COG0446 HcaD Uncharacterized N 78.3 3.5 7.5E-05 35.8 4.5 34 45-78 1-35 (415)
436 PRK08644 thiamine biosynthesis 78.2 4.1 8.8E-05 33.4 4.6 36 41-77 27-63 (212)
437 PLN02206 UDP-glucuronate decar 78.1 14 0.0003 33.7 8.5 30 44-74 121-151 (442)
438 COG0451 WcaG Nucleoside-diphos 77.9 4.3 9.2E-05 33.9 4.8 33 45-78 3-36 (314)
439 PF13460 NAD_binding_10: NADH( 77.8 4.7 0.0001 31.1 4.7 32 45-77 1-33 (183)
440 PRK03659 glutathione-regulated 77.2 3.3 7.1E-05 39.3 4.2 36 42-78 400-435 (601)
441 TIGR01505 tartro_sem_red 2-hyd 76.9 3.5 7.7E-05 35.0 4.1 31 45-76 2-32 (291)
442 TIGR02441 fa_ox_alpha_mit fatt 76.9 3.3 7.2E-05 40.3 4.3 34 43-77 336-369 (737)
443 TIGR00507 aroE shikimate 5-deh 76.7 4.5 9.8E-05 34.1 4.6 32 44-76 119-150 (270)
444 PRK08017 oxidoreductase; Provi 76.6 4.9 0.00011 32.7 4.7 31 45-76 5-36 (256)
445 TIGR00936 ahcY adenosylhomocys 76.5 4.5 9.8E-05 36.7 4.8 35 42-77 195-229 (406)
446 TIGR02440 FadJ fatty oxidation 76.5 3.9 8.5E-05 39.6 4.6 35 43-77 305-339 (699)
447 PF03446 NAD_binding_2: NAD bi 76.4 5.4 0.00012 30.9 4.7 32 44-76 3-34 (163)
448 TIGR03736 PRTRC_ThiF PRTRC sys 76.4 4.6 9.9E-05 34.1 4.5 36 41-77 10-56 (244)
449 PLN02712 arogenate dehydrogena 76.3 7.1 0.00015 37.7 6.3 32 43-75 53-84 (667)
450 TIGR03376 glycerol3P_DH glycer 76.3 4.6 9.9E-05 35.7 4.7 30 44-74 1-38 (342)
451 cd01078 NAD_bind_H4MPT_DH NADP 76.0 5.2 0.00011 31.8 4.6 32 43-75 29-61 (194)
452 cd01485 E1-1_like Ubiquitin ac 75.5 5.5 0.00012 32.2 4.6 35 42-77 19-54 (198)
453 PRK11154 fadJ multifunctional 75.5 4.1 8.8E-05 39.5 4.4 34 43-76 310-343 (708)
454 PRK07326 short chain dehydroge 75.3 5.2 0.00011 32.1 4.5 32 44-76 8-40 (237)
455 PRK08762 molybdopterin biosynt 75.2 5 0.00011 35.7 4.7 34 42-76 135-169 (376)
456 COG0281 SfcA Malic enzyme [Ene 75.2 11 0.00023 34.5 6.7 37 41-78 198-237 (432)
457 cd01486 Apg7 Apg7 is an E1-lik 75.2 5.1 0.00011 35.0 4.5 33 45-78 2-35 (307)
458 PRK12548 shikimate 5-dehydroge 75.0 5.1 0.00011 34.4 4.5 32 44-76 128-160 (289)
459 PRK00066 ldh L-lactate dehydro 74.9 5.2 0.00011 34.8 4.6 34 42-76 6-41 (315)
460 PRK12778 putative bifunctional 74.8 4.6 9.9E-05 39.3 4.6 33 44-77 572-605 (752)
461 TIGR01381 E1_like_apg7 E1-like 74.5 4.8 0.0001 38.7 4.6 36 42-78 338-374 (664)
462 PF00670 AdoHcyase_NAD: S-aden 74.4 5 0.00011 31.9 4.0 33 44-77 25-57 (162)
463 PRK08306 dipicolinate synthase 74.3 5.8 0.00013 34.2 4.7 33 43-76 153-185 (296)
464 PLN02520 bifunctional 3-dehydr 74.3 4.9 0.00011 37.6 4.6 31 44-75 381-411 (529)
465 cd00757 ThiF_MoeB_HesA_family 74.2 5.4 0.00012 32.8 4.4 35 42-77 21-56 (228)
466 PRK07502 cyclohexadienyl dehyd 74.0 5.1 0.00011 34.4 4.3 32 44-76 8-41 (307)
467 PRK11199 tyrA bifunctional cho 73.9 4.7 0.0001 35.9 4.2 33 42-75 98-131 (374)
468 PLN02166 dTDP-glucose 4,6-dehy 73.9 18 0.0004 32.8 8.1 32 43-75 121-153 (436)
469 PRK05476 S-adenosyl-L-homocyst 73.6 5.8 0.00013 36.2 4.7 34 43-77 213-246 (425)
470 cd01490 Ube1_repeat2 Ubiquitin 73.6 5.2 0.00011 36.7 4.4 33 45-78 2-40 (435)
471 cd01065 NAD_bind_Shikimate_DH 73.6 6.9 0.00015 29.5 4.6 32 44-76 21-53 (155)
472 PRK07774 short chain dehydroge 73.6 6.6 0.00014 31.8 4.7 32 44-76 8-40 (250)
473 COG1250 FadB 3-hydroxyacyl-CoA 73.5 4.7 0.0001 35.3 3.9 33 44-77 5-37 (307)
474 PRK11559 garR tartronate semia 73.4 5.6 0.00012 33.8 4.4 32 44-76 4-35 (296)
475 PRK00258 aroE shikimate 5-dehy 73.3 6.2 0.00013 33.5 4.6 34 43-77 124-158 (278)
476 PRK12439 NAD(P)H-dependent gly 73.2 5.8 0.00013 34.8 4.5 31 42-74 7-37 (341)
477 PTZ00075 Adenosylhomocysteinas 72.7 6.6 0.00014 36.4 4.9 34 43-77 255-288 (476)
478 PLN02494 adenosylhomocysteinas 72.4 6.7 0.00015 36.4 4.9 35 42-77 254-288 (477)
479 COG2085 Predicted dinucleotide 72.3 5.8 0.00013 32.9 4.0 29 45-74 4-32 (211)
480 COG0287 TyrA Prephenate dehydr 72.0 7.3 0.00016 33.5 4.8 35 43-78 4-38 (279)
481 PRK04308 murD UDP-N-acetylmura 72.0 7.4 0.00016 35.1 5.0 33 44-77 7-39 (445)
482 PRK08328 hypothetical protein; 71.8 6.6 0.00014 32.5 4.4 35 42-77 27-62 (231)
483 PRK15461 NADH-dependent gamma- 71.8 6.3 0.00014 33.8 4.3 32 44-76 3-34 (296)
484 PRK06057 short chain dehydroge 71.6 7.6 0.00016 31.7 4.7 32 44-76 9-41 (255)
485 KOG3923|consensus 71.4 5.1 0.00011 35.2 3.6 36 42-77 3-44 (342)
486 cd05312 NAD_bind_1_malic_enz N 71.0 6.6 0.00014 33.9 4.2 37 42-78 25-71 (279)
487 PRK08177 short chain dehydroge 71.0 8.9 0.00019 30.7 4.9 32 45-77 4-36 (225)
488 PLN02572 UDP-sulfoquinovose sy 71.0 12 0.00026 34.0 6.2 30 44-74 49-79 (442)
489 PF00056 Ldh_1_N: lactate/mala 70.8 10 0.00023 28.9 5.0 33 44-76 2-36 (141)
490 TIGR00872 gnd_rel 6-phosphoglu 70.6 7.2 0.00016 33.4 4.5 32 44-76 2-33 (298)
491 PRK01710 murD UDP-N-acetylmura 70.6 7.1 0.00015 35.5 4.6 32 44-76 16-47 (458)
492 cd05213 NAD_bind_Glutamyl_tRNA 70.5 7.2 0.00016 33.8 4.4 35 42-76 178-212 (311)
493 PRK12828 short chain dehydroge 70.5 7.8 0.00017 30.8 4.4 31 45-76 10-41 (239)
494 PRK05600 thiamine biosynthesis 70.4 7.3 0.00016 34.8 4.6 35 42-77 41-76 (370)
495 TIGR02355 moeB molybdopterin s 70.4 7.7 0.00017 32.4 4.5 36 42-78 24-60 (240)
496 PF02826 2-Hacid_dh_C: D-isome 70.0 9.7 0.00021 30.0 4.8 36 41-77 35-70 (178)
497 PRK05562 precorrin-2 dehydroge 69.8 8.6 0.00019 32.1 4.5 29 43-72 26-54 (223)
498 PRK05690 molybdopterin biosynt 69.7 8 0.00017 32.4 4.4 36 41-77 31-67 (245)
499 TIGR01317 GOGAT_sm_gam glutama 69.6 8.6 0.00019 35.4 5.0 34 44-77 285-318 (485)
500 PRK08217 fabG 3-ketoacyl-(acyl 69.5 9.2 0.0002 30.8 4.7 32 44-76 7-39 (253)
No 1
>KOG1238|consensus
Probab=100.00 E-value=1.8e-37 Score=284.38 Aligned_cols=158 Identities=41% Similarity=0.743 Sum_probs=143.8
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcccCCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT 117 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~ 117 (197)
+...+|||||||+|+|||++|.||+|++..+|||||+|+..+...++|.+...++.+.++|.|.++|++.+|..+.++.+
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c 132 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC 132 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence 34569999999999999999999999999999999999998777788866666778899999999999999999999999
Q ss_pred ccccccccCCCccccccccccCChhhHhhh---CCCCCCHhhHHHHHHHHhhhcCCCCC-CCCCCCCCCEEeecCCCCCC
Q psy6708 118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVLKYFKKSEFMTDSSKY-NEFHGTQGPFVVKPSPRVDK 193 (197)
Q Consensus 118 ~~~~g~~vGG~S~in~~~~~R~~~~df~~w---g~~~W~~d~l~pyy~~~E~~~~~~~~-~~~hG~~Gpl~vs~~~~~~~ 193 (197)
.|+|||++||||++|+|+|.|+++.|||.| |+++|+|++++|||+|+|....+... .++|+..||+.|+...+..+
T Consensus 133 ~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~ 212 (623)
T KOG1238|consen 133 YWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNN 212 (623)
T ss_pred ecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCc
Confidence 999999999999999999999999999999 88999999999999999998766543 55999999999999988877
Q ss_pred Cc
Q psy6708 194 TF 195 (197)
Q Consensus 194 ~~ 195 (197)
++
T Consensus 213 ~~ 214 (623)
T KOG1238|consen 213 LF 214 (623)
T ss_pred hh
Confidence 54
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=99.97 E-value=2.7e-31 Score=245.57 Aligned_cols=142 Identities=40% Similarity=0.774 Sum_probs=118.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC---CCcccCCccccC-ccCCCCcccccccccccccccCCCCc
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP---SNISYFPENRGQ-LYGSSMDWAFVTEEQSGMFLSLSNQR 116 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~ 116 (197)
++|||||||||++|+++|.||||+++++|||||+|+.. ......|..... .....++|.|.+.|++. ..++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~ 79 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRR 79 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCe
Confidence 46999999999999999999998789999999999754 223334442211 12345789998888874 45678
Q ss_pred cccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEeecC
Q psy6708 117 TTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPS 188 (197)
Q Consensus 117 ~~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~vs~~ 188 (197)
+.+.+|++|||||+||+|+|.|+++.||+.| |.++|+|++|+|||+|+|+++.+. .+.||..||++++++
T Consensus 80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~--~~~~g~~gp~~~~~~ 153 (560)
T PRK02106 80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE--DDYRGGDGPLSVTRG 153 (560)
T ss_pred eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC--ccccCCCCCEEEeCC
Confidence 8999999999999999999999999999999 678999999999999999988432 457999999999876
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.97 E-value=8.9e-31 Score=240.76 Aligned_cols=144 Identities=35% Similarity=0.673 Sum_probs=119.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC---CcccCCccccC-ccCCCCcccccccccccccccCCCCcccc
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS---NISYFPENRGQ-LYGSSMDWAFVTEEQSGMFLSLSNQRTTI 119 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 119 (197)
||||||||+||+++|.|||++..++|||||+|+... .....|..... .....++|.|.+.|++. ++++.+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 899999999999999999995448999999998642 23344432211 12345789999888875 46788999
Q ss_pred ccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEeecCCCCCC
Q psy6708 120 PCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDK 193 (197)
Q Consensus 120 ~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~vs~~~~~~~ 193 (197)
++||+|||||+||+|+|.|+++.||+.| |.++|+|++|+|||+|+|+++... .++||..||+.+++++...+
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~--~~~~g~~G~~~v~~~~~~~~ 152 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE--KPYRGHDGPIKVRRGPADNP 152 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC--cccCCCCCCEEEecCCCCCH
Confidence 9999999999999999999999999999 668999999999999999987643 47899999999998776544
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.97 E-value=6.6e-31 Score=223.69 Aligned_cols=145 Identities=37% Similarity=0.661 Sum_probs=110.1
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcccCCc-cccCccCCCCcccccccccccccccCCCCcccccc
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPC 121 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~~p~-~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~~ 121 (197)
|||||||||++|+++|.|||++++++|||||+|++.......+. .........++|.+.+.|+.. .+++.+.+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 89999999999999999999854589999999998744322111 111223456778887777764 5677788889
Q ss_pred ccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEe-ecCCCCCC
Q psy6708 122 GKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVV-KPSPRVDK 193 (197)
Q Consensus 122 g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~v-s~~~~~~~ 193 (197)
|++|||||+||+|++.|+++.||+.| |.++|+|++|+|||+++|+++.++ .+.||.+||+.+ ..+....|
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~--~~~~g~~~~~~v~~~~~~~~~ 151 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS--SDLHGVDGPLPVSSSPPYPSP 151 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB--GGGSCBSSSEEEHHHCSCHCT
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc--ccccccccccccccccCCCCH
Confidence 99999999999999999999999999 567899999999999999999887 788999999999 44444333
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.96 E-value=2.4e-30 Score=238.83 Aligned_cols=150 Identities=37% Similarity=0.707 Sum_probs=126.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCC-cccCCccccCccCC-CCcccccccccccccccCCCCc
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN-ISYFPENRGQLYGS-SMDWAFVTEEQSGMFLSLSNQR 116 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~ 116 (197)
...+|||||||+|.+||++|.||+ +++++|||||+|+.... ..++|..+...... .++|.|.+.+++. ++++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCcc
Confidence 346899999999999999999999 59999999999987533 45666555444443 7889999988884 57889
Q ss_pred cccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCC--CCCCCCCCCEEeecCCC
Q psy6708 117 TTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKY--NEFHGTQGPFVVKPSPR 190 (197)
Q Consensus 117 ~~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~--~~~hG~~Gpl~vs~~~~ 190 (197)
+.++++++|||+|+||+|+|+|+++.||+.| |.++|+|++++|||+++|++.+...+ ...||..||+.++.+..
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~ 158 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS 158 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence 9999999999999999999999999999999 56899999999999999998775433 34899999999988743
Q ss_pred CCC
Q psy6708 191 VDK 193 (197)
Q Consensus 191 ~~~ 193 (197)
..|
T Consensus 159 ~~~ 161 (542)
T COG2303 159 PNP 161 (542)
T ss_pred chH
Confidence 343
No 6
>PLN02785 Protein HOTHEAD
Probab=99.90 E-value=6.1e-24 Score=197.85 Aligned_cols=119 Identities=27% Similarity=0.385 Sum_probs=96.6
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC--CCcccCCccccCccCCCCcccccccccccccccCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP--SNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQ 115 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~--~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~ 115 (197)
+....|||||||+|+|||++|.+|++ +.+|||||+|+.. .+....+.. +....++|.+.+.+|.. .+++
T Consensus 51 ~~~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~~---~~~~~~d~~~~~~~q~~----~~~~ 121 (587)
T PLN02785 51 GGDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLEN---FHIGLADTSPTSASQAF----ISTD 121 (587)
T ss_pred cccccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHHh---hCCcccccCCccccccc----cCCC
Confidence 34568999999999999999999998 5899999999853 122222221 12345689998888863 3567
Q ss_pred ccccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHHHHHHHHhhhc
Q psy6708 116 RTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMT 168 (197)
Q Consensus 116 ~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~pyy~~~E~~~ 168 (197)
.+.++|||+|||||+||+|+|.|+++.||+. .+|+|++++|||+++|+..
T Consensus 122 ~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~---~GW~~~~~~~~~~~~e~~~ 171 (587)
T PLN02785 122 GVINARARVLGGGTCINAGFYSRASTRFIQK---AGWDAKLVNESYPWVERQI 171 (587)
T ss_pred ceeccccceecchhhhcCeEEEeCCHHHhcc---CCCCcccccchHHHHhccc
Confidence 7899999999999999999999999999973 6799999999999999854
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.57 E-value=1.1e-14 Score=134.70 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=80.6
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCc---------ccC--Cc--ccc----CccC------------
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI---------SYF--PE--NRG----QLYG------------ 93 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~---------~~~--p~--~~~----~~~~------------ 93 (197)
||+||||+|++|+++|+.|++ .+.+|||||+|...... +.+ +. +.. .++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 799999999999999999998 79999999999875310 000 00 000 0000
Q ss_pred -CCCccccccccccccc-ccCC-----CCccc-cccccccCCCccccccccccCChhhHhhh-CCCCC--CHhhHHHHHH
Q psy6708 94 -SSMDWAFVTEEQSGMF-LSLS-----NQRTT-IPCGKGLGGSSSIHSLYYTRGDSRDYDEW-GYDAF--KFDNVLKYFK 162 (197)
Q Consensus 94 -~~~~w~~~~~p~~~~~-~~~~-----~~~~~-~~~g~~vGG~S~in~~~~~R~~~~df~~w-g~~~W--~~d~l~pyy~ 162 (197)
+.-.|+-. |..... .+.| ...+. ..+.+.|||+|++|++.+.|+++++- .| + .+| +|++|+|||.
T Consensus 80 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g~~-~dWPI~y~eL~PyY~ 155 (544)
T TIGR02462 80 LDPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PKLS-DDAAEDDAEWDRLYT 155 (544)
T ss_pred CCccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cCCC-CCCCCCHHHHHHHHH
Confidence 00112210 000000 0000 01111 44779999999999999999999763 44 5 789 9999999999
Q ss_pred HHhhhcCCC
Q psy6708 163 KSEFMTDSS 171 (197)
Q Consensus 163 ~~E~~~~~~ 171 (197)
++|++++-.
T Consensus 156 ~Ae~~~gv~ 164 (544)
T TIGR02462 156 KAESLIGTS 164 (544)
T ss_pred HHHHHhCCC
Confidence 999987643
No 8
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.57 E-value=7.1e-08 Score=86.00 Aligned_cols=37 Identities=49% Similarity=0.846 Sum_probs=34.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+||+||||+|+||+++|.+|++ .|.+|||||++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 47999999999999999999998 68999999999875
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.47 E-value=5.6e-07 Score=82.92 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=35.8
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++.++|+||||+|.+|+++|.++++ .|.+|+|||+.+..
T Consensus 57 ~~~~~~DVvVVG~G~AGl~AAi~Aa~-~Ga~VivlEK~~~~ 96 (506)
T PRK06481 57 ELKDKYDIVIVGAGGAGMSAAIEAKD-AGMNPVILEKMPVA 96 (506)
T ss_pred cccccCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 45568999999999999999999998 79999999998753
No 10
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.44 E-value=2.4e-07 Score=83.56 Aligned_cols=36 Identities=47% Similarity=0.666 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.||+||||+|++|+++|..|++ .|.+|+|||++..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~-~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh-CCCeEEEEEcCCC
Confidence 46999999999999999999998 7999999999865
No 11
>PRK10015 oxidoreductase; Provisional
Probab=98.44 E-value=2.5e-07 Score=83.58 Aligned_cols=37 Identities=41% Similarity=0.706 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++||+||||+|+||+++|..|++ .|.+|+|||++...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 46999999999999999999998 79999999998753
No 12
>PRK07121 hypothetical protein; Validated
Probab=98.43 E-value=4.7e-07 Score=82.90 Aligned_cols=49 Identities=27% Similarity=0.439 Sum_probs=39.7
Q ss_pred CCcCCCCCCCCCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 27 TSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 27 ~~~~~~~~~~~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+++.... ..+..++|+||||+|.||+++|.++++ .|.+|+|||+....
T Consensus 7 ~~~~~~~~--~~~~~~~DVvVVGaG~AGl~AA~~aae-~G~~VillEK~~~~ 55 (492)
T PRK07121 7 RPVSAEDV--TSWDDEADVVVVGFGAAGACAAIEAAA-AGARVLVLERAAGA 55 (492)
T ss_pred ccCCCccc--cccCCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence 34544432 345678999999999999999999998 79999999998763
No 13
>KOG1298|consensus
Probab=98.34 E-value=8.7e-07 Score=78.72 Aligned_cols=40 Identities=38% Similarity=0.428 Sum_probs=35.5
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+....+|+||||+|.+|+++|+.|++ .|+||+|||+.-..
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~k-dGRrVhVIERDl~E 80 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAK-DGRRVHVIERDLSE 80 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhh-CCcEEEEEeccccc
Confidence 44568999999999999999999998 69999999998554
No 14
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.32 E-value=5.3e-07 Score=74.59 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|++|||+|++|+++|+.|++ .++||+++|+....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~~~ 52 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKLSP 52 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSSS-
T ss_pred cCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 7999999999999999999998 59999999997653
No 15
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.30 E-value=9.1e-07 Score=74.10 Aligned_cols=34 Identities=41% Similarity=0.688 Sum_probs=32.1
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
||++|||+|++|+++|.+|++ .|.+|+|||++..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 799999999999999999997 7999999999965
No 16
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.28 E-value=7.9e-07 Score=80.13 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=27.3
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
||+||||+|+||+++|..+++ .|.+|+|||++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE-KGARVLVLERNKRV 35 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCccc
Confidence 899999999999999999998 79999999999765
No 17
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.27 E-value=8.6e-07 Score=78.60 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
||+||||+|+||+++|..|++ .|.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 799999999999999999998 79999999997
No 18
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.27 E-value=1.1e-06 Score=75.04 Aligned_cols=36 Identities=42% Similarity=0.628 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+||+||||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHh-cccccccchhcccc
Confidence 5899999999999999999998 79999999998764
No 19
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.26 E-value=1.2e-06 Score=74.08 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=33.4
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+||++|||+|++|+++|.+|++ .+.+|+|||++...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSLAF 56 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 7999999999999999999998 79999999998653
No 20
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.25 E-value=1.2e-06 Score=78.03 Aligned_cols=39 Identities=33% Similarity=0.588 Sum_probs=35.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN 80 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~ 80 (197)
+.+|+||||+|+||.++|..+++ +|++|+|||+++....
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k~Gr 40 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPKLGR 40 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCccccc
Confidence 57999999999999999999998 8999999999987543
No 21
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.24 E-value=1.4e-06 Score=73.74 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|++|||+|++|+++|.+|++ +|.+|+|||+....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~~~ 60 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKLSF 60 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 6999999999999999999997 79999999987653
No 22
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.23 E-value=1.2e-06 Score=79.63 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=35.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+++||+||||+|.+||++|..|++ .|++||+||+....
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~y 39 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYY 39 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCc
Confidence 358999999999999999999997 79999999998776
No 23
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.22 E-value=1.5e-06 Score=79.19 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...||+||||+|+||+++|..|++ .|.+|+|||+...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 347999999999999999999997 7999999999753
No 24
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.22 E-value=2.1e-06 Score=76.25 Aligned_cols=39 Identities=33% Similarity=0.481 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-+..+|++|||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence 3457999999999999999999997 79999999998753
No 25
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.21 E-value=1.7e-06 Score=78.54 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.++|+||||+|.+|+++|.++++ .|.+|+|||+++.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~-~G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAARE-AGASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 357999999999999999999998 7999999999763
No 26
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.21 E-value=1.9e-06 Score=75.68 Aligned_cols=38 Identities=32% Similarity=0.570 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+..+|+||||+|++|+++|..|++ .|.+|+|||++...
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPP 40 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCc
Confidence 457899999999999999999997 79999999998763
No 27
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=2e-06 Score=74.74 Aligned_cols=36 Identities=36% Similarity=0.614 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.||+||||||.+|+++|..|++ .|++|||||+....
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccC
Confidence 3899999999999999998887 79999999998775
No 28
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.18 E-value=2.9e-06 Score=57.61 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=27.8
Q ss_pred EECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 47 IVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 47 IVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
|||+|++|+++|.+|++ .+.+|+|+|+....
T Consensus 1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHH-CCCcEEEEecCccc
Confidence 89999999999999998 69999999998764
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=98.17 E-value=4.1e-06 Score=78.31 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=34.3
Q ss_pred CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+....+||+||||+|+||..+|.++++ .|++|+|||++.
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~~ 81 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKDY 81 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHH-cCCeEEEEeccc
Confidence 344468999999999999999999998 799999999863
No 30
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.16 E-value=2e-06 Score=71.44 Aligned_cols=36 Identities=36% Similarity=0.387 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+.|+||||+|++|+++|++||+ .+.||+++|+.-..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls~ 65 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKLSF 65 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh-CCceEEEEEeeccc
Confidence 6799999999999999999998 79999999996543
No 31
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.16 E-value=2.2e-06 Score=75.55 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=33.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++.||+||||+|++|+++|..|++ .|.+|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 357999999999999999999997 799999999975
No 32
>PLN02985 squalene monooxygenase
Probab=98.16 E-value=5.1e-06 Score=76.86 Aligned_cols=41 Identities=34% Similarity=0.419 Sum_probs=36.1
Q ss_pred CCCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 36 PDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 36 ~~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+......+|+||||+|++|+++|..|++ .|.+|+|||+...
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~~ 77 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDLR 77 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcCC
Confidence 3456678999999999999999999998 7999999999753
No 33
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.15 E-value=2.6e-06 Score=78.27 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+|+||||+|.+|+++|..||+ +|.+|+|||+-...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~ 38 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRV 38 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCC
Confidence 46999999999999999999998 89999999976553
No 34
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.15 E-value=2.7e-06 Score=72.71 Aligned_cols=32 Identities=44% Similarity=0.667 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
|+||||+|.+|+++|.+|++ .|.+|+|||++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH-CCCeEEEEeecc
Confidence 89999999999999999998 799999999993
No 35
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.15 E-value=2.8e-06 Score=74.26 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.+||++|||+|..|+++|..|++ .|.+|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence 36999999999999999999998 6999999999853
No 36
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.15 E-value=2.7e-06 Score=76.76 Aligned_cols=35 Identities=34% Similarity=0.720 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++||+||||+|+||..+|.+|++ .+++|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 36999999999999999999998 799999999874
No 37
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.14 E-value=3.3e-06 Score=74.64 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=33.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence 457999999999999999999997 7999999999753
No 38
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.13 E-value=2.7e-06 Score=77.23 Aligned_cols=35 Identities=37% Similarity=0.645 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++||+||||+|+||..+|.++++ .|++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEecccc
Confidence 36999999999999999999998 799999999853
No 39
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.13 E-value=3e-06 Score=75.46 Aligned_cols=34 Identities=38% Similarity=0.533 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
|+||||+|.||+++|.++++ .|.+|+|||+++..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae-~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE-AGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH-TTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhh-hcCeEEEEEeeccc
Confidence 89999999999999999998 79999999999873
No 40
>PRK06185 hypothetical protein; Provisional
Probab=98.13 E-value=3.4e-06 Score=74.80 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=33.9
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..++|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~-~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLAR-AGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 467999999999999999999998 7999999999854
No 41
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.13 E-value=2.6e-06 Score=76.15 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+|+||||+|+||+++|..|++ .|.+|+|||+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 699999999999999999997 7999999998643
No 42
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.11 E-value=3.8e-06 Score=77.54 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=35.0
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++.++|+||||+| +|+.+|.++++ .|.+|+|||+.+..
T Consensus 3 ~~d~~~DVvVVG~G-aGl~aA~~aa~-~G~~V~vlEk~~~~ 41 (513)
T PRK12837 3 AWDEEVDVLVAGSG-GGVAGAYTAAR-EGLSVALVEATDKF 41 (513)
T ss_pred CCCCccCEEEECch-HHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 46679999999999 99999999998 79999999988653
No 43
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.11 E-value=3.5e-06 Score=73.75 Aligned_cols=34 Identities=41% Similarity=0.526 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
||+||||+|.+|+++|+.|++ .|.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 799999999999999999998 6999999999753
No 44
>PRK09126 hypothetical protein; Provisional
Probab=98.11 E-value=3.4e-06 Score=74.30 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+||+||||+|++|+++|..|++ .|.+|+|+|+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence 6999999999999999999998 7999999999875
No 45
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.11 E-value=3.9e-06 Score=75.64 Aligned_cols=35 Identities=37% Similarity=0.628 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 36999999999999999999998 799999999975
No 46
>PRK06116 glutathione reductase; Validated
Probab=98.10 E-value=3.7e-06 Score=75.98 Aligned_cols=34 Identities=32% Similarity=0.596 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.+||+||||+|+||..+|.+|++ .|++|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 36999999999999999999998 79999999986
No 47
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.09 E-value=3.3e-06 Score=74.83 Aligned_cols=34 Identities=50% Similarity=0.755 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHH--HhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRL--AEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~L--ae~~g~~VLvLEaG~~~ 78 (197)
||||||+|+||+++|.+| ++ .+++|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence 899999999999999999 65 79999999998764
No 48
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.09 E-value=4e-06 Score=77.32 Aligned_cols=36 Identities=28% Similarity=0.552 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.||+||||+|..|+.+|..|++ .|.+|+|||++..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~-rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAG-RGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 57999999999999999999998 7999999999754
No 49
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.09 E-value=4e-06 Score=77.12 Aligned_cols=37 Identities=30% Similarity=0.586 Sum_probs=33.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..+||+||||+|..|+.+|+.|++ .|.+|+|||++..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~-rG~~V~LlEk~d~ 40 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAG-RGLKVLLCEKDDL 40 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence 356999999999999999999998 6999999999953
No 50
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.09 E-value=4.2e-06 Score=73.15 Aligned_cols=34 Identities=35% Similarity=0.548 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
||+||||+|.+|+++|++|++ .+++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 699999999999999999998 6999999999754
No 51
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.08 E-value=4.6e-06 Score=73.47 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.+|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence 46899999999999999999997 7999999999754
No 52
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.08 E-value=4.2e-06 Score=74.42 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+|+||||+|..|+.+|++|++ .|++|+|||++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 699999999999999999998 6999999999863
No 53
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.07 E-value=5.5e-06 Score=77.02 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=36.3
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+..++|+||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae-~G~~VilleK~~~~ 51 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARR-AGRRVLVVTKAALD 51 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHH-cCCeEEEEEccCCC
Confidence 56678999999999999999999998 69999999998754
No 54
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.07 E-value=4e-06 Score=75.88 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
+||+||||+|+||..+|.++++ .|++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 6999999999999999999998 79999999985
No 55
>PRK06370 mercuric reductase; Validated
Probab=98.06 E-value=5.4e-06 Score=75.29 Aligned_cols=35 Identities=43% Similarity=0.648 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 38 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL 38 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 46999999999999999999998 799999999864
No 56
>PRK08013 oxidoreductase; Provisional
Probab=98.06 E-value=5.4e-06 Score=73.78 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
++|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence 6899999999999999999997 7999999999875
No 57
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.05 E-value=4.5e-06 Score=75.38 Aligned_cols=34 Identities=38% Similarity=0.556 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
|+||||+|++|+++|..+++ .|.+|||||+++..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr-~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR-AGAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TTS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHH-CCCEEEEEECCccC
Confidence 89999999999999999998 79999999999875
No 58
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.05 E-value=5.1e-06 Score=78.20 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+||+||||+|+||+.+|..+|+ .|.+|+|||...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence 46999999999999999999997 799999999975
No 59
>PLN02463 lycopene beta cyclase
Probab=98.05 E-value=5.6e-06 Score=75.44 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...||+||||+|+||+++|..|++ .|.+|+|||+.+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCcc
Confidence 447999999999999999999997 7999999999754
No 60
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=5.3e-06 Score=75.16 Aligned_cols=35 Identities=34% Similarity=0.570 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence 47999999999999999999998 699999999865
No 61
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.04 E-value=5.4e-06 Score=73.05 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
|+||||+|++|+++|.+|++ .|.+|+|||+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence 89999999999999999997 79999999987643
No 62
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.04 E-value=5.6e-06 Score=75.41 Aligned_cols=35 Identities=34% Similarity=0.638 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
..||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 37 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKGK 37 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 47999999999999999999998 799999999863
No 63
>PLN02697 lycopene epsilon cyclase
Probab=98.04 E-value=9.6e-06 Score=75.37 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
....||+||||+|+||+++|.+|++ .|++|+|||++.
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~~ 141 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPDL 141 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCcc
Confidence 3457999999999999999999997 799999999863
No 64
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.04 E-value=6.2e-06 Score=74.67 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..||+||||+|++|+.+|.+|++ .|++|+|+|++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~~ 39 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYRN 39 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEecccc
Confidence 46999999999999999999998 7999999998643
No 65
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.03 E-value=6e-06 Score=72.10 Aligned_cols=33 Identities=42% Similarity=0.574 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
|+||||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCc
Confidence 89999999999999999998 7999999999975
No 66
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.03 E-value=6e-06 Score=75.61 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=32.6
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
||+||||+|.+|+++|..|++ +|.+|+|||+....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~-~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV-KGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence 799999999999999999998 79999999998664
No 67
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.02 E-value=5.8e-06 Score=73.41 Aligned_cols=34 Identities=41% Similarity=0.650 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+||++|||+|++|+++|..|++ .|.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 5899999999999999999997 799999999976
No 68
>PRK07045 putative monooxygenase; Reviewed
Probab=98.02 E-value=6.8e-06 Score=72.58 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=33.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+|++|||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCcc
Confidence 46899999999999999999998 79999999998754
No 69
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.02 E-value=1.1e-05 Score=73.38 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
..++|+||||+|..|+++|++|++. +|.+|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 3579999999999999999999983 4899999999753
No 70
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.02 E-value=6.4e-06 Score=73.06 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
.+|++|||+|.+|+++|++|++. ++.+|+|||++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 48999999999999999999972 3899999999864
No 71
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.01 E-value=7.7e-06 Score=72.67 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGG 76 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~ 76 (197)
+..||+||||+|..|+++|+.|++..| .+|+|||++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 358999999999999999999997337 5999999975
No 72
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.01 E-value=8.4e-06 Score=76.54 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=36.2
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+..++|+||||+|.+|+++|.++++ .|.+|+|||++...
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae-~G~~VivlEk~~~~ 46 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAA-RGLDTLVVEKSAHF 46 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEcCCCC
Confidence 46679999999999999999999998 79999999998753
No 73
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.01 E-value=7.7e-06 Score=74.02 Aligned_cols=34 Identities=38% Similarity=0.699 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
++||+||||+|++|..+|.+|++ .|++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 46999999999999999999998 79999999984
No 74
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.01 E-value=7.5e-06 Score=73.12 Aligned_cols=35 Identities=46% Similarity=0.693 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+|++|||+|++|+++|.+|++ .|.+|+|||++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 799999999999999999997 69999999996543
No 75
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.01 E-value=7.2e-06 Score=74.18 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.||+||||+|++|..+|.+|++ .|++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 4899999999999999999998 79999999983
No 76
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.00 E-value=7.5e-06 Score=76.20 Aligned_cols=35 Identities=40% Similarity=0.538 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+||+||||+|..|+.+|+.|++ .|.+|+|||++.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~-rG~~V~LlEk~d 39 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCAL-RGLRCILVERHD 39 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence 36999999999999999999998 699999999974
No 77
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.99 E-value=8.1e-06 Score=68.71 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
||++|||+|++|+.+|..|++ .+.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 799999999999999999997 699999999875
No 78
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.98 E-value=8.5e-06 Score=73.93 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
||+||||+|+||..+|.++++ .|++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 799999999999999999998 799999999854
No 79
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.98 E-value=8.7e-06 Score=74.20 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
+||+||||+|+||..+|.++++ .|++|+|+|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~ 34 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEG 34 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 5999999999999999999998 7999999997
No 80
>PTZ00367 squalene epoxidase; Provisional
Probab=97.97 E-value=1e-05 Score=75.72 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+||+||||+|++|+++|..|++ .|.+|+|||+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 57999999999999999999998 799999999976
No 81
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.96 E-value=1.1e-05 Score=76.47 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
++||+||||+|..|+.+|+.|++ .|.+|+|||++..
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~-rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT-RGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecccc
Confidence 45999999999999999999998 7999999999843
No 82
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.95 E-value=1e-05 Score=71.55 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++|++|||+|++|+++|..|++ .|.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 5899999999999999999998 799999999864
No 83
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.95 E-value=1.1e-05 Score=71.11 Aligned_cols=34 Identities=41% Similarity=0.556 Sum_probs=31.4
Q ss_pred CcccEEEECCChHHHHHHHHHHhhC---CCeEEEEecC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVR---SWNILLVEAG 75 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~---g~~VLvLEaG 75 (197)
..+|++|||+|++|+++|..|++ . |.+|+|+|+-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence 46899999999999999999997 5 9999999994
No 84
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.94 E-value=1e-05 Score=71.53 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhC--CCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVR--SWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~--g~~VLvLEaG~~ 77 (197)
.||+||||+|++|+++|..|++ . +.+|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~-~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ-AAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCCCCEEEEEeCCCc
Confidence 3899999999999999999997 5 499999999864
No 85
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=1.1e-05 Score=73.42 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
+||+||||+|+||..+|.+|++ .|++|+|+|++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 6999999999999999999998 79999999986
No 86
>KOG0029|consensus
Probab=97.94 E-value=1.2e-05 Score=74.24 Aligned_cols=40 Identities=28% Similarity=0.433 Sum_probs=35.9
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...+..+|||||+|.||+++|+.|.+ .|.+|+|||+..+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRV 50 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCc
Confidence 34568999999999999999999997 79999999998775
No 87
>PRK08244 hypothetical protein; Provisional
Probab=97.94 E-value=1.1e-05 Score=73.67 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|++|||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 5899999999999999999998 79999999998653
No 88
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.93 E-value=1.2e-05 Score=74.84 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.++|+||||+|.||+++|..+++ .|.+|+|||+++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 57999999999999999999998 799999999988
No 89
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.93 E-value=1.2e-05 Score=76.02 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=34.9
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...++||||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~lveK~~~~ 64 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVE-LGYKTACISKLFPT 64 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHH-cCCcEEEEeccCCC
Confidence 4458999999999999999999998 79999999998653
No 90
>PRK13748 putative mercuric reductase; Provisional
Probab=97.93 E-value=1.2e-05 Score=74.66 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
..||+||||+|++|..+|.+|++ .|++|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 36999999999999999999998 799999999873
No 91
>PRK07190 hypothetical protein; Provisional
Probab=97.92 E-value=1.2e-05 Score=73.93 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.+|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCc
Confidence 46899999999999999999997 7999999999875
No 92
>PLN02661 Putative thiazole synthesis
Probab=97.92 E-value=1.1e-05 Score=71.32 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|++|||+|++|+++|..|+++++.+|+|||++...
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 6899999999999999999997458999999997653
No 93
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.92 E-value=1.2e-05 Score=71.39 Aligned_cols=34 Identities=44% Similarity=0.724 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
|+||||+|+||+.+|.+|++. ++++|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 899999999999999999972 4999999999874
No 94
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.92 E-value=1.2e-05 Score=70.51 Aligned_cols=34 Identities=41% Similarity=0.532 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~ 78 (197)
|+||||+|++|+++|..|++ .| .+|+|+|+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCcc
Confidence 89999999999999999997 79 999999998653
No 95
>PLN02576 protoporphyrinogen oxidase
Probab=97.92 E-value=1.8e-05 Score=72.18 Aligned_cols=39 Identities=33% Similarity=0.396 Sum_probs=34.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhC-CCeEEEEecCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP 78 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG~~~ 78 (197)
.+..+|+||||+|.+|+++|++|++ . |.+|+|||+....
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rv 48 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRV 48 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCC
Confidence 3456899999999999999999997 7 8999999998764
No 96
>PRK11445 putative oxidoreductase; Provisional
Probab=97.91 E-value=1.1e-05 Score=70.63 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.||++|||+|+||+++|..|++ . .+|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence 3899999999999999999997 6 99999998763
No 97
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.91 E-value=2.8e-05 Score=73.73 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=35.4
Q ss_pred CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
++.++++||+|||+|++|+++|..|++.+|.+|+|||+-+.
T Consensus 27 ~~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 27 ADLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred ccCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 44466899999999999999999999624999999998765
No 98
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.90 E-value=1.5e-05 Score=72.85 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
..||+||||+|++|..+|.+|++ .|++|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 36999999999999999999998 799999999864
No 99
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.89 E-value=1.5e-05 Score=74.31 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..||+||||+|+||+.+|.+|++ .+++|+|+|++..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~~ 38 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDDF 38 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence 36999999999999999999997 7999999998753
No 100
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.89 E-value=1.8e-05 Score=74.07 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..++|+||||+|.+|+++|.++++ .|.+|+|||+....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~-~G~~v~llEk~~~~ 44 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARK-LGLDVVVLEKEPVF 44 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 358999999999999999999998 79999999998754
No 101
>PRK14694 putative mercuric reductase; Provisional
Probab=97.89 E-value=1.8e-05 Score=72.09 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
..||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence 47999999999999999999998 799999999874
No 102
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.89 E-value=1.5e-05 Score=71.66 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~ 78 (197)
|+||||+|.+|+++|.++++ .| .+|+|||+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~-~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK-AGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH-cCCccEEEEecCCCC
Confidence 89999999999999999998 79 999999998764
No 103
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.87 E-value=1.8e-05 Score=73.86 Aligned_cols=38 Identities=29% Similarity=0.576 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+..++|+||||+|.+|+++|.++++ .|.+|+|||+...
T Consensus 3 ~d~~~DvvIiG~G~aGl~aA~~~a~-~G~~v~liEk~~~ 40 (557)
T PRK12844 3 WDETYDVVVVGSGGGGMCAALAAAD-SGLEPLIVEKQDK 40 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 4568999999999999999999998 6999999998754
No 104
>PRK06184 hypothetical protein; Provisional
Probab=97.87 E-value=1.8e-05 Score=72.61 Aligned_cols=37 Identities=41% Similarity=0.599 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+++|++|||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 36899999999999999999998 79999999997653
No 105
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.87 E-value=1.7e-05 Score=73.07 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
..+|+||||+|..|+++|+.|++. ++.+|+|||+...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 479999999999999999999973 6889999999754
No 106
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.87 E-value=1.7e-05 Score=70.35 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.+|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence 5899999999999999999998 7999999999874
No 107
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.87 E-value=1.8e-05 Score=72.27 Aligned_cols=35 Identities=34% Similarity=0.618 Sum_probs=32.3
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-|+||||+|.+|+++|..|++ .|.+|+|||+....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK-RGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 589999999999999999998 79999999998654
No 108
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.87 E-value=1.7e-05 Score=72.46 Aligned_cols=33 Identities=33% Similarity=0.638 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
++||+||||+|+||..+|.++++ .|++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 36999999999999999999998 7999999998
No 109
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.86 E-value=2e-05 Score=74.28 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=33.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
..++|+||||+|.||+++|.++++. +|.+|+|||++..
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 3479999999999999999999972 2899999999864
No 110
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.9e-05 Score=68.60 Aligned_cols=35 Identities=34% Similarity=0.578 Sum_probs=30.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCe-EEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~ 76 (197)
+.||+||||+|+||+.+|-.+++ .+++ ++|+|.+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence 57999999999999999999997 7888 77777753
No 111
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.86 E-value=1.8e-05 Score=72.72 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
+|++|||+|.+|+++|++|++. ++.+|+|||+...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 6999999999999999999983 5899999999753
No 112
>PLN02268 probable polyamine oxidase
Probab=97.85 E-value=2e-05 Score=70.68 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS 79 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~ 79 (197)
++||||+|.+|+.+|++|.+ .|++|+|||+..+..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~G 36 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIG 36 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCC
Confidence 79999999999999999997 799999999988763
No 113
>PRK14727 putative mercuric reductase; Provisional
Probab=97.85 E-value=2.9e-05 Score=70.99 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
..+..||+||||+|++|..+|.+|++ .|++|+|+|++.
T Consensus 12 ~~~~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~ 49 (479)
T PRK14727 12 RSKLQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD 49 (479)
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 34457999999999999999999998 799999999873
No 114
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.85 E-value=2.1e-05 Score=68.86 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=33.8
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+|+||||+|.+|+.+|+.|++ .|.+|+|+|++...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCccC
Confidence 57999999999999999999998 68899999998753
No 115
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=1.9e-05 Score=74.26 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|+||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ-SGQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCCC
Confidence 47999999999999999999998 79999999998653
No 116
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.85 E-value=1.8e-05 Score=70.29 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.+|++|||+|++|+++|..|++ .|.+|.|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 5899999999999999999998 79999999998
No 117
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.85 E-value=1.9e-05 Score=70.32 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.+|++|||+|++|+++|..|++ .|.+|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 5899999999999999999997 79999999986
No 118
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.85 E-value=1.6e-05 Score=71.73 Aligned_cols=34 Identities=38% Similarity=0.668 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHhh---CCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEV---RSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~ 76 (197)
||+||||+|++|+++|..|++. .|.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999962 589999999953
No 119
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.84 E-value=2.3e-05 Score=72.65 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=35.2
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.+.++|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~ 57 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDT 57 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 44578999999999999999999997 7999999999874
No 120
>PRK07208 hypothetical protein; Provisional
Probab=97.84 E-value=2.2e-05 Score=71.23 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=33.4
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+..|+||||+|.+|+++|++|++ .|++|+|+|+....
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~ 39 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVV 39 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 46799999999999999999998 69999999997654
No 121
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.84 E-value=2e-05 Score=74.78 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=34.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+..++||||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus 47 ~~~~~DVlVIG~G~AGl~AAl~Aae-~G~~VilveK~~~~ 85 (635)
T PLN00128 47 VDHTYDAVVVGAGGAGLRAAIGLSE-HGFNTACITKLFPT 85 (635)
T ss_pred eeeecCEEEECccHHHHHHHHHHHh-cCCcEEEEEcCCCC
Confidence 3457999999999999999999998 79999999998653
No 122
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=2.1e-05 Score=74.02 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~-~G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE-AGLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence 47999999999999999999998 7899999999864
No 123
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.84 E-value=1.9e-05 Score=69.67 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+|++|||+|++|+++|..|++ .|.+|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence 799999999999999999997 799999999874
No 124
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.84 E-value=1.9e-05 Score=72.67 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
.||+||||+|+||..+|.++++ .|++|+|||+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 5999999999999999999998 7999999996
No 125
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.84 E-value=2.3e-05 Score=72.36 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=31.9
Q ss_pred CCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEec
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEA 74 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEa 74 (197)
.+.+|+||||+|.+|+++|+.|++ .++.+|+|||+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 357899999999999999999998 35899999999
No 126
>PLN02676 polyamine oxidase
Probab=97.83 E-value=4.4e-05 Score=70.22 Aligned_cols=37 Identities=38% Similarity=0.469 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~ 78 (197)
..+|+||||+|.+|+.+|.+|++ .|. +|+|||+..+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRI 62 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCC
Confidence 36799999999999999999998 687 69999998765
No 127
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.82 E-value=2.4e-05 Score=73.04 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.+++|+||||+|.+|+++|.++++ .|.+|+|||+.+.
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~-~G~~v~llEk~~~ 41 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAH-RGLSTVVVEKAPH 41 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence 4458999999999999999999998 7999999999764
No 128
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.82 E-value=2.1e-05 Score=73.48 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=34.3
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+...++||||||+|.||+++|.+++ .|.+|+|||++...
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~--~G~~V~lieK~~~~ 43 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP--SHLRVGLITKDTLK 43 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh--cCCCEEEEEccCCC
Confidence 5667899999999999999999986 38899999998753
No 129
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=2.8e-05 Score=73.08 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLAR-AGLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence 47999999999999999999998 7999999999754
No 130
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=2.5e-05 Score=73.94 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++||||||+|.||+++|.++++ .|.+|+|||++..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae-~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE-RGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH-CCCCEEEEeccCC
Confidence 47999999999999999999998 7999999999864
No 131
>PRK06996 hypothetical protein; Provisional
Probab=97.82 E-value=2.4e-05 Score=69.63 Aligned_cols=37 Identities=46% Similarity=0.634 Sum_probs=32.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCC----CeEEEEecCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRS----WNILLVEAGG 76 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g----~~VLvLEaG~ 76 (197)
.++++|++|||+|++|+++|..|++ .| ++|+|+|+..
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDARE 48 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCC
Confidence 4568999999999999999999997 44 5899999975
No 132
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=2.1e-05 Score=73.52 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae-~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS-AGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence 46899999999999999999998 7999999999864
No 133
>PRK06834 hypothetical protein; Provisional
Probab=97.81 E-value=2.4e-05 Score=71.93 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.+|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 5899999999999999999998 7999999998764
No 134
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.81 E-value=2.2e-05 Score=74.56 Aligned_cols=34 Identities=44% Similarity=0.671 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+|+||||+|.+|+++|+.|++ .|.+|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5899999999999999999998 699999999985
No 135
>PLN02507 glutathione reductase
Probab=97.81 E-value=2.2e-05 Score=72.32 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=31.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
.+||+||||+|++|..+|.++++ .|++|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 47999999999999999999998 7999999995
No 136
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.81 E-value=2.5e-05 Score=69.45 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.+|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 5799999999999999999998 7999999999874
No 137
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.80 E-value=3.5e-05 Score=72.16 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=34.1
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+.++||+||||+| +|.++|.+.++ .|.+|+|||+.+..
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~-~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHE-LGLSVLIVEKSSYV 50 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 45569999999999 89999999987 79999999997654
No 138
>PRK06847 hypothetical protein; Provisional
Probab=97.80 E-value=2.9e-05 Score=67.93 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+..|++|||+|++|+++|..|++ .|.+|+|+|+...
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 35799999999999999999997 7999999998764
No 139
>PRK07588 hypothetical protein; Provisional
Probab=97.79 E-value=2.6e-05 Score=68.88 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
|++|||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHH-CCCceEEEeCCCCc
Confidence 79999999999999999998 79999999998653
No 140
>PRK06126 hypothetical protein; Provisional
Probab=97.79 E-value=3.4e-05 Score=71.44 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=33.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.++||+|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence 457999999999999999999998 7999999998764
No 141
>PRK08275 putative oxidoreductase; Provisional
Probab=97.79 E-value=2.7e-05 Score=72.60 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.||+++|.++++. ++.+|+|||++..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 579999999999999999999973 3789999999875
No 142
>PRK10262 thioredoxin reductase; Provisional
Probab=97.79 E-value=3.3e-05 Score=66.65 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=32.3
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
..+.+|++|||+|+||+.+|..|++ .+++|+++|+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~ 38 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM 38 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence 3468999999999999999999998 69999999864
No 143
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.79 E-value=2.8e-05 Score=69.04 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
|+||||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-AGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCCc
Confidence 79999999999999999998 6999999999853
No 144
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.79 E-value=2.7e-05 Score=69.64 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~~ 78 (197)
++||||+|.+|+++|++|++ .| ++|+|+|+....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~-~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK-KGPDADITLLEASDRL 37 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH-hCCCCCEEEEEcCCCC
Confidence 58999999999999999997 56 899999997654
No 145
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.79 E-value=2.5e-05 Score=71.80 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhC-CCeEEEEecC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAG 75 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG 75 (197)
.+||+||||+|++|..+|.++++ . |++|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 47999999999999999999997 5 8999999973
No 146
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.78 E-value=3.1e-05 Score=71.72 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...+|++|||+|++|+++|..|++ .|.+|+|||+....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 457999999999999999999998 79999999998753
No 147
>PLN02815 L-aspartate oxidase
Probab=97.78 E-value=3.2e-05 Score=72.85 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-..++|+||||+|.||+.+|.++++ .+ +|+|||++...
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae-~G-~VvlleK~~~~ 63 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAE-YG-TVAIITKDEPH 63 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhh-CC-CEEEEECCCCC
Confidence 3447999999999999999999998 67 89999998764
No 148
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.77 E-value=4e-05 Score=70.74 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~ 76 (197)
.+||+||||+|..|+++|+.|++. +..+|+|||+..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 579999999999999999999984 347999999985
No 149
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.77 E-value=2.4e-05 Score=70.88 Aligned_cols=36 Identities=36% Similarity=0.452 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|+||||+|.||+.+|.+++ .+.+|+|||++...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~--~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR--KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc--cCCCEEEEecCCCC
Confidence 4789999999999999999974 48999999998764
No 150
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.77 E-value=3e-05 Score=69.87 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHhhC----CCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVR----SWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~----g~~VLvLEaG~~~ 78 (197)
..|+||||+|.+|+++|++|++ . |.+|+|+|+....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRV 41 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcC
Confidence 3689999999999999999997 5 8999999998764
No 151
>PRK06753 hypothetical protein; Provisional
Probab=97.77 E-value=3.1e-05 Score=67.80 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
|+||||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcc
Confidence 79999999999999999998 79999999998753
No 152
>PLN02546 glutathione reductase
Probab=97.77 E-value=2.9e-05 Score=72.64 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
+||+||||+|++|..+|.++++ .|++|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 6999999999999999999998 7999999995
No 153
>PRK07233 hypothetical protein; Provisional
Probab=97.76 E-value=3.4e-05 Score=68.43 Aligned_cols=34 Identities=38% Similarity=0.517 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++||||+|.+|+++|+.|++ .|++|+|||+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence 58999999999999999998 69999999999865
No 154
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.76 E-value=3.2e-05 Score=70.61 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+|+||||+|.||+++|.++++ .|.+|+|||++..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae-~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK-KGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 699999999999999999998 7999999999854
No 155
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.75 E-value=4.6e-05 Score=71.46 Aligned_cols=40 Identities=40% Similarity=0.602 Sum_probs=36.2
Q ss_pred CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..+..++|+||||+|.+|+.+|..+++ .|.+|+|||+...
T Consensus 11 ~~~~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~l~ek~~~ 50 (578)
T PRK12843 11 ERWDAEFDVIVIGAGAAGMSAALFAAI-AGLKVLLVERTEY 50 (578)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 467779999999999999999999998 7999999998754
No 156
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.75 E-value=3e-05 Score=70.94 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=30.8
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+||||||.+|+++|.+|++ .|++|+|||+....
T Consensus 1 vvVIGaG~~GL~aA~~La~-~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA-AGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHh-CCCcEEEEECCCCC
Confidence 6999999999999999998 79999999998775
No 157
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.74 E-value=3.6e-05 Score=73.10 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.||+++|.++++ .|.+|+|||+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae-~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE-LGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 37899999999999999999998 7999999997543
No 158
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.73 E-value=4.6e-05 Score=60.52 Aligned_cols=32 Identities=34% Similarity=0.541 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
|+||||+|+||..+|.+|++ ++.+|+++|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence 79999999999999999996 899999998765
No 159
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.73 E-value=3.6e-05 Score=71.75 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
|+||||+|.||+++|..+++ .|.+|+|||++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae-~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK-AGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence 89999999999999999998 6999999999864
No 160
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.72 E-value=4.4e-05 Score=67.22 Aligned_cols=38 Identities=34% Similarity=0.570 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..++|+||||+|.+|+++|.+|++ +|++|++||.-+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~-aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHh-cCceEEEEcccccc
Confidence 358999999999999999999997 89999999987664
No 161
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.72 E-value=5.7e-05 Score=70.84 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=35.3
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.+..++|+||||+|.+|+++|..+++ .|.+|+|||+...
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~~iek~~~ 46 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAW-HGLKVIVVEKDPV 46 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 46679999999999999999999998 7999999998754
No 162
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.72 E-value=4.2e-05 Score=69.29 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+||+||||+|.+|+++|.+|++ .|.+|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~-~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAE-AGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCcEEEEECCC
Confidence 5899999999999999999998 799999999985
No 163
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.72 E-value=4e-05 Score=70.03 Aligned_cols=35 Identities=40% Similarity=0.703 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+||+||||+|+||-.+|.|+++ .|++|+++|++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecC
Confidence 57999999999999999999998 687899999995
No 164
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.72 E-value=3.9e-05 Score=73.05 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
+||+||||+|++|..+|.++++ .|++|+|+|.+
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 7999999999999999999998 79999999965
No 165
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.72 E-value=3.5e-05 Score=72.13 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
++|+||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 68999999999999999999972 2589999999865
No 166
>PRK07236 hypothetical protein; Provisional
Probab=97.72 E-value=4.5e-05 Score=67.42 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...|+||||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 46899999999999999999998 7999999999864
No 167
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.71 E-value=3.8e-05 Score=73.16 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|+||||+|.||+.+|.++++ .|.+|+|||+.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae-~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ-RGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH-cCCCEEEEeCCCCC
Confidence 47899999999999999999998 79999999988653
No 168
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.71 E-value=3.8e-05 Score=71.89 Aligned_cols=37 Identities=35% Similarity=0.458 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCC---CeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRS---WNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g---~~VLvLEaG~~~ 78 (197)
.++|+||||+|.||+++|.++++ .| .+|+|||++...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~-~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAE-RSGGKLSVAVVSKTQPM 43 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHH-hCCCCCcEEEEEcccCC
Confidence 36899999999999999999998 56 899999998653
No 169
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.70 E-value=4.2e-05 Score=71.92 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=32.5
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+|+||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE-AGVHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH-cCCcEEEEEccCCC
Confidence 4699999999999999999998 79999999987653
No 170
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.68 E-value=4.3e-05 Score=71.04 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.||+.+|.++ + .|.+|+|||++..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~-~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-E-RGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-h-cCCCEEEEEccCC
Confidence 468999999999999999998 7 6999999999864
No 171
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.68 E-value=5.4e-05 Score=66.77 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.5
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence 5799999999999999999997 7999999999865
No 172
>KOG2415|consensus
Probab=97.68 E-value=4.5e-05 Score=68.74 Aligned_cols=38 Identities=37% Similarity=0.557 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHh-----hCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAE-----VRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae-----~~g~~VLvLEaG~~~ 78 (197)
+++|++|||+|+||+.+|.||-| +...+|.|||++...
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~ 117 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV 117 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence 47999999999999999999865 346799999998765
No 173
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.67 E-value=5.6e-05 Score=60.33 Aligned_cols=32 Identities=38% Similarity=0.689 Sum_probs=25.2
Q ss_pred EEECCChHHHHHHHHHHhhCCCe-EEEEecCCCC
Q psy6708 46 IIVGAGTAGSILASRLAEVRSWN-ILLVEAGGDP 78 (197)
Q Consensus 46 IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~~ 78 (197)
||||+|++|+++|.+|.+ .|.+ |+|||++...
T Consensus 1 ~IIGaG~aGl~~a~~l~~-~g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-RGIDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-TT---EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Confidence 799999999999999998 6888 9999998653
No 174
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.65 E-value=7.6e-05 Score=67.53 Aligned_cols=38 Identities=37% Similarity=0.531 Sum_probs=35.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+..|+||||+|.+|+++|++|.+ .|.+|+|||+....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence 568999999999999999999997 89999999998764
No 175
>PRK07538 hypothetical protein; Provisional
Probab=97.65 E-value=5.9e-05 Score=67.33 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCc
Confidence 89999999999999999997 7999999999864
No 176
>PRK12839 hypothetical protein; Provisional
Probab=97.64 E-value=6.8e-05 Score=70.30 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.+|+++|..+++ .+.+|+|||++..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~-~g~~v~~iek~~~ 42 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAY-GGAKVLVVEKAST 42 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 47999999999999999999998 7999999999765
No 177
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.63 E-value=6.3e-05 Score=69.09 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
+||+||||+|++|..+|.++++ .|++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5899999999999999999998 79999999973
No 178
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.62 E-value=6.6e-05 Score=68.86 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|+||||+|.||+.+|.++++ .+. |+|||++...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~-~G~-V~lleK~~~~ 36 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD-QGR-VIVLSKAPVT 36 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh-CCC-EEEEEccCCC
Confidence 5799999999999999999998 677 9999999653
No 179
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.62 E-value=8e-05 Score=73.22 Aligned_cols=37 Identities=35% Similarity=0.538 Sum_probs=33.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~-~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAE-HGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 357999999999999999999997 7999999999875
No 180
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.61 E-value=6.8e-05 Score=69.66 Aligned_cols=36 Identities=36% Similarity=0.573 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++||||||+|.||+.+|.++++ . .+|+|||++...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~-~-~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAE-H-RRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHH-C-CCEEEEeccCCC
Confidence 57999999999999999999997 4 799999998753
No 181
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=6.8e-05 Score=70.36 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+||||+|.||+.+|.++++ . .+|+|||++..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~-~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP-R-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh-C-CCEEEEeCCCC
Confidence 36899999999999999999997 4 89999999864
No 182
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.57 E-value=9.3e-05 Score=67.10 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=33.7
Q ss_pred CcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~ 78 (197)
+.||++|||+|..|+++|+.|++ .++.+|+|||+-...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~ 40 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence 47999999999999999999998 344999999997664
No 183
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.56 E-value=8.4e-05 Score=69.78 Aligned_cols=38 Identities=32% Similarity=0.281 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~ 78 (197)
.++|+||||+|.||+.+|.++++. ++.+|+|||++...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 368999999999999999999973 35799999998653
No 184
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.53 E-value=0.00011 Score=66.69 Aligned_cols=35 Identities=34% Similarity=0.296 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-|++|||+|++|+.+|..|++ .|.+|.|+|..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence 489999999999999999998 79999999976543
No 185
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.53 E-value=0.0001 Score=69.73 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHh---hCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAE---VRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae---~~g~~VLvLEaG~~ 77 (197)
||||||||.||+.+|.++++ ..|.+|+|||++..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 89999999999999999982 26899999999875
No 186
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.53 E-value=9.1e-05 Score=69.58 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~ 78 (197)
++|+||||+|.||+++|.++++. ++.+|+|||++...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 68999999999999999999973 36899999998653
No 187
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.53 E-value=0.00013 Score=67.47 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
...||++|||+|+||+.+|.+|++ .|++|+|+|.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 347999999999999999999997 7999999986
No 188
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.52 E-value=9.2e-05 Score=68.44 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|+||||+|.||+.+|.++++ +.+|+|||++...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKR 37 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence 7899999999999999999875 7899999998753
No 189
>PRK05868 hypothetical protein; Validated
Probab=97.52 E-value=0.00011 Score=64.90 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
|++|||+|++|+++|..|++ .|.+|.|+|+.+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence 79999999999999999998 79999999998653
No 190
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00013 Score=66.46 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCe-EEEEecCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGGDP 78 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~~ 78 (197)
..+.+|++|||+|++|.++|++|.+ .+.. ++++|+....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDDV 44 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCCc
Confidence 4568999999999999999999998 6887 9999999753
No 191
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.51 E-value=0.00012 Score=66.22 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhh-----CCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEV-----RSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~-----~g~~VLvLEaG~~~ 78 (197)
++||||+|.+|+++|++|++. .+.+|+|||+..+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~ 42 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL 42 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence 589999999999999999973 24799999998765
No 192
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.50 E-value=0.00013 Score=67.45 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
...||++|||+|+||+.+|.+|++ .|.+|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 457999999999999999999997 7999999975
No 193
>PLN02568 polyamine oxidase
Probab=97.50 E-value=0.00014 Score=67.73 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCC-----CeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRS-----WNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-----~~VLvLEaG~~~ 78 (197)
+..|+||||+|.+|+++|.+|++ .+ .+|+|+|+....
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~-~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-cccccCCceEEEEeCCCCc
Confidence 35799999999999999999997 45 899999998765
No 194
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.50 E-value=0.00014 Score=62.24 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+++|||+|.+|+++|..|++ .|.+|+|+|+|.-.
T Consensus 3 siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE-AGREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHh-cCcEEEEEEcCCCc
Confidence 68999999999999999998 89999999999653
No 195
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.49 E-value=0.00012 Score=73.81 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=33.8
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+|+||||+|.||+++|.+.++ .|.+|+|||+++..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAAS-CGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEccCCC
Confidence 36999999999999999999998 79999999998754
No 196
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.48 E-value=0.00016 Score=66.19 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...+++|||+|++|+++|.+|.+ .|.+|+|+|++...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~v 45 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR-EGHTVVVFEREKQV 45 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence 35789999999999999999998 69999999998653
No 197
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.47 E-value=0.00015 Score=65.40 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+++|||+|.+|+++|.+|++ .|++|+|+|+.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~~~ 34 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD-AGHTPIVLEARDVL 34 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 48999999999999999998 79999999998753
No 198
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.43 E-value=0.00018 Score=65.15 Aligned_cols=34 Identities=44% Similarity=0.619 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
||++|||+|.+|+++|.+|++ .+++|+|||+|..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~-~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE-AGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH-CCCCEEEEeCCCc
Confidence 799999999999999999997 6999999999964
No 199
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.42 E-value=0.00017 Score=67.57 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=34.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+||+||||+|.||+.+|.++++ .+.+|+|||+....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~-~g~~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHh-cCCcEEEEEccccC
Confidence 358999999999999999999998 78999999998764
No 200
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.42 E-value=0.00016 Score=64.96 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=25.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEE
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLV 72 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvL 72 (197)
|+||||+|.|||.+|..+|+ .|.+|+|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr-~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR-MGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEE
Confidence 89999999999999999998 79999999
No 201
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.40 E-value=0.00021 Score=63.59 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
=+++|||+|++|+++|..|++ .|.+|.|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 368999999999999999997 7999999998764
No 202
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.39 E-value=0.00021 Score=64.95 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
++||||+|+||..+|.++++ .|++|+|||++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCcc
Confidence 68999999999999999998 7999999999753
No 203
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.39 E-value=0.00023 Score=66.11 Aligned_cols=37 Identities=38% Similarity=0.631 Sum_probs=34.8
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+++|+||||+|..|+-+|..++. .|.+|+|+|++..-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-RGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-CCCeEEEEecCccc
Confidence 79999999999999999999997 79999999999764
No 204
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.38 E-value=0.00021 Score=71.00 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+|++|||+|+||+.+|..|++ .+.+|+|+|+++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar-~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR-AGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence 36899999999999999999997 79999999997653
No 205
>PRK07846 mycothione reductase; Reviewed
Probab=97.36 E-value=0.00021 Score=64.99 Aligned_cols=32 Identities=41% Similarity=0.675 Sum_probs=27.8
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+||+||||+|++|..+|.+ + .|++|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~-~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--F-ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--H-CCCeEEEEeCCC
Confidence 4899999999999988876 2 499999999864
No 206
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00026 Score=62.12 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=33.7
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+||++|||+|.||..+|.+|.+ .|++|.+|-.|...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQsA 37 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQSA 37 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCChhh
Confidence 6999999999999999999998 79999999999863
No 207
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.33 E-value=0.00038 Score=66.45 Aligned_cols=36 Identities=17% Similarity=0.412 Sum_probs=33.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+..+++|||+|++|+++|..|++ .|.+|.|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 467999999999999999999998 799999999975
No 208
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.32 E-value=0.00025 Score=64.44 Aligned_cols=32 Identities=38% Similarity=0.612 Sum_probs=27.4
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+||+||||+|++|..+|.+ + .|++|+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~-~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--F-ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--H-CCCeEEEEeCCC
Confidence 5999999999999888655 3 599999999854
No 209
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.30 E-value=0.00027 Score=65.38 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..++|+||||+|.||+++|.+++ +.+|+|||++..
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCC
Confidence 35799999999999999999986 359999999975
No 210
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.30 E-value=0.00018 Score=64.46 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=29.3
Q ss_pred EEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 46 IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
||||+|++|+++|.+|++ .+++|+|||+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~-~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR-EGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHh-cCCcEEEEecCccc
Confidence 699999999999999998 79999999998753
No 211
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.30 E-value=0.00032 Score=63.79 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
|++|||+|.+|+.+|..|++ .|.+|+|+|..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence 79999999999999999998 7999999997654
No 212
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.28 E-value=0.00032 Score=66.22 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
||+||||+|++|+.+|..+++ .+.+|+|||...
T Consensus 1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence 799999999999999999997 799999999864
No 213
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.27 E-value=0.00045 Score=68.64 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+++|||+|+||+.+|..|++ .|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 46899999999999999999998 7999999998754
No 214
>PRK12831 putative oxidoreductase; Provisional
Probab=97.27 E-value=0.00046 Score=63.08 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...|++|||+|+||+.+|.+|++ .|++|+|+|+...
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 46799999999999999999998 7999999998653
No 215
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.24 E-value=0.00042 Score=63.06 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=30.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS 79 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~ 79 (197)
+++||+||+|.|..-|++|..||. .|++||.||+.....
T Consensus 2 ~~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence 469999999999999999999997 799999999998864
No 216
>KOG2820|consensus
Probab=97.21 E-value=0.00033 Score=61.55 Aligned_cols=36 Identities=44% Similarity=0.418 Sum_probs=33.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+..|+||||+|..|+.+|++|++ .+.++|+||+=+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK-~g~killLeqf~~ 41 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAK-RGDKILLLEQFPL 41 (399)
T ss_pred cceeEEEEcccccchHHHHHHHh-cCCeEEEEeccCC
Confidence 57999999999999999999998 6899999999765
No 217
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.19 E-value=0.00036 Score=65.87 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=29.3
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+||||+|.||+++|.++++ .|.+|+|||++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae-~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE-LGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHH-cCCCEEEEEecC
Confidence 6899999999999999998 799999999987
No 218
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.17 E-value=0.00051 Score=61.29 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~ 78 (197)
.++|||+|++|+++|..|++ .| .+|.|+|+.+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~-~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK-HSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCCCEEEEecCCcC
Confidence 58999999999999999997 56 599999998653
No 219
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.17 E-value=0.00066 Score=62.03 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...+++|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence 46799999999999999999997 79999999987643
No 220
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0005 Score=63.11 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.|+|+|+|.||+.+|+.|++ +|.+|.|+|++...
T Consensus 2 rVai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~ 35 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRL 35 (485)
T ss_pred eEEEEcccHHHHHHHHHHHh-CCCceEEEeccCcc
Confidence 37999999999999999998 89999999999875
No 221
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.12 E-value=0.00046 Score=63.00 Aligned_cols=34 Identities=41% Similarity=0.636 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCC---CeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS---WNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g---~~VLvLEaG~~~ 78 (197)
||||||+|+||.++|..|++. . .+|+|||+....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCC
Confidence 799999999999999999983 4 899999998654
No 222
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.12 E-value=0.00065 Score=61.75 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..++++|||+|++|+.+|..|++ .|++|+|+|+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~ 167 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHK 167 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 46899999999999999999997 7999999998653
No 223
>PLN02612 phytoene desaturase
Probab=97.12 E-value=0.00071 Score=63.39 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..+++|||+|.+|+++|++|++ .|.+|+|+|+...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~ 127 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDV 127 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence 5789999999999999999997 7999999999754
No 224
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.10 E-value=0.0013 Score=45.41 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=30.6
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|||+|..|+-+|..|++ .+++|.|||+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAE-LGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHH-hCcEEEEEeccchh
Confidence 6899999999999999998 79999999999764
No 225
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.10 E-value=0.00079 Score=65.50 Aligned_cols=38 Identities=26% Similarity=0.538 Sum_probs=34.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
....++||||+|.+|+++|..|++ .|.+|+|+|+....
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccC
Confidence 457899999999999999999997 79999999997654
No 226
>PLN02529 lysine-specific histone demethylase 1
Probab=97.08 E-value=0.00081 Score=64.89 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=34.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
....|+||||+|++|+.+|..|++ .|.+|+|+|+..+.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~ 195 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNRP 195 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCccC
Confidence 357899999999999999999997 79999999997654
No 227
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.07 E-value=0.00076 Score=61.51 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
|+||||+|++|..+|.++++ .+.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 79999999999999999998 699999999875
No 228
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.05 E-value=0.00079 Score=61.68 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+++|||+|.+|+++|.+|++ .|.+|.|+|+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD-AGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCCC
Confidence 47999999999999999997 79999999997654
No 229
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.01 E-value=0.0012 Score=62.71 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+++|||+|+||+.+|..|++ .|.+|+|+|+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 45799999999999999999998 7999999998754
No 230
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.99 E-value=0.0011 Score=60.30 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+++|||+|++|+.+|..|++ .+++|+|+|+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence 35799999999999999999997 6999999998865
No 231
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.97 E-value=0.0011 Score=66.05 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...+++|||||+||+.+|..|++ .|++|+|+|++...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence 35799999999999999999998 69999999997643
No 232
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.95 E-value=0.0018 Score=59.88 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~ 78 (197)
.....++|||||+||+.+|..|++ ..+++|.|+|+-+..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 345689999999999999999985 358999999998754
No 233
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.94 E-value=0.001 Score=60.73 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~~ 78 (197)
-++|||+|.+|+.+|++|.+ .+ ..|.|+|++.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k-~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQK-AGPDVEVTLFEADDRV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHH-hCCCCcEEEEecCCCC
Confidence 37999999999999999998 45 899999999765
No 234
>KOG3855|consensus
Probab=96.94 E-value=0.00092 Score=60.18 Aligned_cols=38 Identities=34% Similarity=0.620 Sum_probs=32.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhC---CCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVR---SWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~---g~~VLvLEaG~~ 77 (197)
++.||+||||+|+.|..+|..|..++ .+||++||+|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 44899999999999999999997643 579999999943
No 235
>KOG1399|consensus
Probab=96.94 E-value=0.00097 Score=60.92 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.-+++|||+|+||+++|..|.+ .|+.|.++|+....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCCc
Confidence 4589999999999999999997 79999999999875
No 236
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.93 E-value=0.0011 Score=65.78 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+++|||||+||+++|..|++ .|++|.|+|+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Confidence 35789999999999999999997 7999999998754
No 237
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.93 E-value=0.001 Score=64.50 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
+++|||+|+||+++|..|++. +|.+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999973 3899999999865
No 238
>KOG0685|consensus
Probab=96.92 E-value=0.0014 Score=59.85 Aligned_cols=41 Identities=32% Similarity=0.406 Sum_probs=35.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS 79 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~ 79 (197)
..+..-++|||+|.||+.+|.||-++....|+|+|+..+..
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 34456899999999999999999976678999999998864
No 239
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.89 E-value=0.0014 Score=63.30 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
...+++|||+|+||+.+|..|++ .|.+|+|+|+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 46799999999999999999997 799999999854
No 240
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.87 E-value=0.0019 Score=60.63 Aligned_cols=38 Identities=26% Similarity=0.212 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHHhh---CCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEV---RSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~~~ 78 (197)
+.-+++|||||.||+++|..|+++ +|.+|.|+|+....
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 356899999999999999999984 47899999998764
No 241
>KOG2665|consensus
Probab=96.86 E-value=0.00086 Score=58.75 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=35.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP 78 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~ 78 (197)
..+.||.||||+|..|++.|++|+- .++++|+|||+-...
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 4568999999999999999999984 579999999998764
No 242
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.84 E-value=0.0019 Score=64.17 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..-+++|||+|+||+.+|..|++ .|++|.|+|+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 45689999999999999999998 7999999998754
No 243
>KOG2614|consensus
Probab=96.84 E-value=0.0016 Score=58.54 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+-++||||+|.+|++.|.-|++ .|.+|+|+|+-.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeeccc
Confidence 4589999999999999999998 7999999999544
No 244
>PLN02487 zeta-carotene desaturase
Probab=96.78 E-value=0.0025 Score=59.94 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+++|||+|.+|+.+|.+|++ .|++|+|+|+.+..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~ 110 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRPFI 110 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh-CCCeeEEEecCCCC
Confidence 4699999999999999999997 79999999997654
No 245
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.78 E-value=0.0011 Score=59.79 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=27.9
Q ss_pred EECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 47 IVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 47 IVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
|||+|.+|+++|.++++ .|.+|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~-~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR-AGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 79999999999999998 7999999999874
No 246
>PLN03000 amine oxidase
Probab=96.73 E-value=0.0022 Score=62.88 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=33.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...+++|||+|.+|+.+|..|.+ .+.+|+|+|+..+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence 46899999999999999999997 79999999998765
No 247
>KOG0405|consensus
Probab=96.71 E-value=0.0028 Score=56.25 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
..|||.|||+|.+|...|+|-++ .|.+|.|+|...
T Consensus 19 k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f 53 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPF 53 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh-cCceEEEEecCC
Confidence 48999999999999999999887 799999999983
No 248
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.69 E-value=0.0025 Score=55.90 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=32.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+++|||+|++|+.+|.+|++ .+++|.|+|+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 3589999999999999999997 69999999998654
No 249
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.67 E-value=0.0025 Score=60.70 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+++|||+|++|+.+|..|++ .|.+|+|+|+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 35799999999999999999998 7999999998765
No 250
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.0017 Score=60.33 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.||+||||+|-||+-+|...|+ .|.+++||=-..+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcCCC
Confidence 46999999999999999999997 7999999977655
No 251
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.63 E-value=0.0039 Score=57.06 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+++|||+|++|+.+|..|++ .|.+|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 46799999999999999999997 6999999998764
No 252
>KOG4716|consensus
Probab=96.63 E-value=0.0023 Score=56.66 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-.||.||||+|.+|+++|.+-+. -|.+|++|+.=.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFVK 52 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeecc
Confidence 37999999999999999999997 699999998753
No 253
>PLN02976 amine oxidase
Probab=96.60 E-value=0.0032 Score=64.47 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=34.4
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+....+|++|||+|++|+.+|.+|++ .|.+|+|||+....
T Consensus 689 ~~~~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~v 728 (1713)
T PLN02976 689 DSVDRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSRI 728 (1713)
T ss_pred CcCCCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccCC
Confidence 34456899999999999999999997 79999999996543
No 254
>KOG2853|consensus
Probab=96.59 E-value=0.0026 Score=56.41 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=35.8
Q ss_pred CCCCCcccEEEECCChHHHHHHHHHHh---hCCCeEEEEecCCCC
Q psy6708 37 DQWPQEFDFIIVGAGTAGSILASRLAE---VRSWNILLVEAGGDP 78 (197)
Q Consensus 37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae---~~g~~VLvLEaG~~~ 78 (197)
++.+.++|++|||+|-.|+.+|.-|-+ +.+.+|+|+|+..-.
T Consensus 81 ~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 81 EVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 455678999999999999999998865 456999999998764
No 255
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.49 E-value=0.005 Score=58.53 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=33.0
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
...+++|||+|++|+.+|..|++ .|.+|.|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence 46789999999999999999997 7999999999875
No 256
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.49 E-value=0.0038 Score=57.12 Aligned_cols=38 Identities=26% Similarity=0.534 Sum_probs=34.8
Q ss_pred CcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~ 78 (197)
++||+|+||+|..|++++..|++ ++..+|.|+|+-...
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~ 40 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV 40 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence 58999999999999999999998 688999999998764
No 257
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.47 E-value=0.005 Score=56.65 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..+++|||+|++|+.+|..|++ .+.+|.|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 4699999999999999999997 7999999998764
No 258
>KOG2960|consensus
Probab=96.45 E-value=0.0008 Score=56.06 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~ 76 (197)
+-|+||||+|.+|+.+|+.++. +++++|.+||+.-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 4699999999999999999984 6899999999853
No 259
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.37 E-value=0.005 Score=56.98 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..-++|||||+||+.+|.+|....+++|.|+|+-+..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4569999999999999998764469999999998875
No 260
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.34 E-value=0.0054 Score=55.16 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~ 78 (197)
.++|||+|+||+.+|.+|++. ++.+|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 589999999999999999873 35699999998753
No 261
>KOG1335|consensus
Probab=96.32 E-value=0.0045 Score=55.52 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+||++|||+|++|-++|.+-+| .|.+...+|...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH-hcceeEEEeccC
Confidence 47999999999999999999998 799999999944
No 262
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.32 E-value=0.0045 Score=61.38 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=31.1
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
....++|||+|+||..+|+.|++ .|++|.|+|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEccc
Confidence 35689999999999999999997 79999999985
No 263
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.28 E-value=0.0059 Score=56.98 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.|+|||+|++|+++|..|.+ .|..|.++|+..+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TT-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHH-CCCCCeEEecCCCC
Confidence 48999999999999999998 69999999998775
No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.25 E-value=0.0063 Score=55.05 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~ 78 (197)
.+||||+|+||..+|.+|.+ +++.+|+|+|+....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 58999999999999999986 346899999998753
No 265
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.22 E-value=0.0067 Score=55.83 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.=+++|||+|.||..+|..|++ .|.+|.|+|+-+..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 4579999999999999999997 79999999998765
No 266
>PRK13984 putative oxidoreductase; Provisional
Probab=96.22 E-value=0.0085 Score=56.37 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
....+++|||+|++|..+|..|++ .|.+|.|+|+...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 346789999999999999999997 7999999998764
No 267
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.21 E-value=0.0042 Score=57.05 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
||+|||||.||+++|..|++ ..+|+||=+++..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--SFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence 99999999999999999996 3999999998765
No 268
>KOG4254|consensus
Probab=96.12 E-value=0.0054 Score=55.97 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+||+||||+|..|+.+|..|++ -+.+|.|+|+....
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r-~g~~V~vlerrhv~ 49 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR-YGQSVAVLERRHVI 49 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh-cCcceEEEEEeeec
Confidence 569999999999999999999997 79999999998543
No 269
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.09 E-value=0.0082 Score=56.10 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..-+++|||+|++|+.+|..|++ .|.+|+|+|+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 35689999999999999999997 6999999997643
No 270
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.05 E-value=0.0068 Score=53.42 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=27.6
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+.||+|+||.|++++.+|..|.+....+++.||+-+..
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 46999999999999999999998656999999987754
No 271
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.03 E-value=0.0091 Score=53.16 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~ 78 (197)
-++||||+|+||+.+|..|.+. ...+|+|+++....
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 4799999999999999999872 23589999987653
No 272
>PRK09897 hypothetical protein; Provisional
Probab=95.92 E-value=0.011 Score=55.29 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
.+++|||+|++|.++|.+|.+. ...+|.|+|....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 4799999999999999999873 3468999999654
No 273
>KOG4405|consensus
Probab=95.91 E-value=0.0089 Score=54.00 Aligned_cols=42 Identities=29% Similarity=0.508 Sum_probs=37.6
Q ss_pred CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708 37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS 79 (197)
Q Consensus 37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~ 79 (197)
+..|++||+||||.|..=+++|+.-++ .|.+||=|+......
T Consensus 3 D~lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 3 DILPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYYG 44 (547)
T ss_pred cCCchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCccccC
Confidence 357889999999999999999999997 899999999988763
No 274
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.89 E-value=0.012 Score=53.00 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=32.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
....++||||+|.||+.+|.+|.. .+.+|.|||.....
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence 346789999999999999999975 57899999987653
No 275
>KOG2311|consensus
Probab=95.87 E-value=0.0081 Score=55.29 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=31.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..+|||||||+|-|||-+|..-|+ -|.+.+||-..-+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh-cCCceEEeecccc
Confidence 568999999999999999999886 6888888765543
No 276
>KOG0042|consensus
Probab=95.82 E-value=0.0041 Score=57.80 Aligned_cols=36 Identities=42% Similarity=0.577 Sum_probs=32.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+||++|||+|+.|+=+|.--+- +|++|.|+|+|...
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~T-RGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAAT-RGLKTALVEAGDFA 102 (680)
T ss_pred cccEEEECCCccCcceeehhhc-ccceeEEEeccccc
Confidence 6999999999999999988664 79999999999764
No 277
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.78 E-value=0.015 Score=51.39 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~ 77 (197)
.++||||+|+||..+|.+|.+ +++.+|.||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 489999999999999999986 45678999987654
No 278
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.70 E-value=0.014 Score=51.02 Aligned_cols=35 Identities=14% Similarity=0.408 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~~ 78 (197)
.+||||+|.||..+|.+|.+ .++.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 38999999999999999964 257899999987653
No 279
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.015 Score=51.30 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-+.|||+|.||+-+|+++++ .|++|.|.|-.+..
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~k 38 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAK-RGVPVILYEMRPVK 38 (439)
T ss_pred ceEEEcccccccHHHHHHHH-cCCcEEEEEccccc
Confidence 47899999999999999998 79999999998765
No 280
>KOG3851|consensus
Probab=95.52 E-value=0.02 Score=50.46 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=35.0
Q ss_pred CCCCCCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708 36 PDQWPQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP 78 (197)
Q Consensus 36 ~~~~~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~ 78 (197)
......+|.++|||+|.+|+.+|+++.+. +.-+|-+||--.+.
T Consensus 33 ~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 33 ARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred hhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 34556799999999999999999999973 34589999977653
No 281
>KOG1276|consensus
Probab=95.36 E-value=0.025 Score=51.41 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~ 78 (197)
...-+++|||+|.+|+.+|+.|++. +...|.|.|++++.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 3467899999999999999999973 44567889999875
No 282
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.031 Score=49.95 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
...||+||+|.|.-=|+++.+|+- .+.+||.|++....
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~Y 41 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYY 41 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCcc
Confidence 348999999999999999999997 69999999998775
No 283
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.28 E-value=0.023 Score=51.86 Aligned_cols=39 Identities=36% Similarity=0.477 Sum_probs=34.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhh----CCCeEEEEecCCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEV----RSWNILLVEAGGDPS 79 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~----~g~~VLvLEaG~~~~ 79 (197)
..||+||||+|++|..+|++|+.+ +..+|++||.|.+..
T Consensus 17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~ 59 (486)
T COG2509 17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE 59 (486)
T ss_pred hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence 479999999999999999999974 368999999998753
No 284
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.21 E-value=0.022 Score=50.60 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..-++.|||+|.+|+++|..|+. ..+|.|.|++...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl 42 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL 42 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence 46689999999999999999996 6899999999875
No 285
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.013 Score=52.16 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=28.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHHhhCCCeE-EEEec
Q psy6708 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNI-LLVEA 74 (197)
Q Consensus 39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~V-LvLEa 74 (197)
.++.||++|||+|+||..+|..-|+ .|.|. ++-|+
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaAR-KGiRTGl~aer 243 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAAR-KGIRTGLVAER 243 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHh-hcchhhhhhhh
Confidence 4568999999999999999999887 68776 44443
No 286
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.14 E-value=0.028 Score=43.68 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.6
Q ss_pred EEECCChHHHHHHHHHHhhC----CCeEEEEecCC
Q psy6708 46 IIVGAGTAGSILASRLAEVR----SWNILLVEAGG 76 (197)
Q Consensus 46 IIVGsG~aG~~~A~~Lae~~----g~~VLvLEaG~ 76 (197)
.|||+|++|..++.+|.+.. ..+|.|+|..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 49999999999999999753 57899999843
No 287
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.01 E-value=0.037 Score=48.26 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=32.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-+++|||+|..|+.+|..|.+ .|++|.++|.....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEccccc
Confidence 599999999999999999998 79999999999875
No 288
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.98 E-value=0.041 Score=42.00 Aligned_cols=31 Identities=39% Similarity=0.678 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+.|+|+|..|+..|++|++ .+.+|.++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence 5799999999999999998 899999998887
No 289
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.82 E-value=0.031 Score=51.33 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=32.2
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-.+.|||||++|+.+|..|++ .|++|++.|+-+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCC
Confidence 789999999999999999997 79999999987664
No 290
>KOG2844|consensus
Probab=94.74 E-value=0.042 Score=52.49 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=30.8
Q ss_pred CCCCCcccEEEECCChHHHHHHHHHHhhCCCeE-EEEecC
Q psy6708 37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNI-LLVEAG 75 (197)
Q Consensus 37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~V-LvLEaG 75 (197)
..++...|++|||+|.+|+.+|+.||+ .++++ +++|+-
T Consensus 34 ~~~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~ 72 (856)
T KOG2844|consen 34 TPLPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERS 72 (856)
T ss_pred ccCCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEeee
Confidence 345667999999999999999999998 78884 555543
No 291
>KOG2755|consensus
Probab=94.53 E-value=0.03 Score=48.05 Aligned_cols=34 Identities=44% Similarity=0.573 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~ 77 (197)
.|||||+|.||..+|..|++ .+...||+|-+.+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 38999999999999999997 46789999988765
No 292
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.06 Score=44.68 Aligned_cols=34 Identities=32% Similarity=0.636 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+||||+|..|..+|..|++ .|..|+++|.-...
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~~ 35 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEER 35 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHHH
Confidence 48999999999999999998 69999999997653
No 293
>KOG1439|consensus
Probab=94.05 E-value=0.028 Score=50.57 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=34.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++||+||+|.|.-=|+++..|+. .|++||.+++.+..
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYY 39 (440)
T ss_pred CceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCC
Confidence 46999999999999999999997 69999999998876
No 294
>KOG1800|consensus
Probab=94.03 E-value=0.075 Score=47.77 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~ 78 (197)
-++|||||+||..+|..|-+ .++.+|-|.|+-+..
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 79999999999999999987 467999999998763
No 295
>KOG2404|consensus
Probab=93.69 E-value=0.08 Score=46.87 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+||||+|.||+.++.++-. .+..|++||.-...
T Consensus 11 pvvVIGgGLAGLsasn~iin-~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN-KGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHh-cCCeEEEEeccCCc
Confidence 69999999999999999996 67789999987664
No 296
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.63 E-value=0.12 Score=46.08 Aligned_cols=34 Identities=32% Similarity=0.503 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQ-RRCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 69999999999999999997 69999999998753
No 297
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.59 E-value=0.12 Score=45.61 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-.++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~-~g~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCR-AGKAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCc
Confidence 368999999999999999997 6999999999875
No 298
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.52 E-value=0.099 Score=47.31 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHhhC-CCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG~~~ 78 (197)
--+||||+|.+|..+|.+|.+.. +.+|.|||+-...
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 45899999999999999999742 5889999998764
No 299
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.44 E-value=0.12 Score=47.09 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~i 215 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLAD-FGVEVTVVEAADRI 215 (472)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence 79999999999999999997 79999999998753
No 300
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.28 E-value=0.073 Score=48.14 Aligned_cols=38 Identities=39% Similarity=0.545 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHHhhC------------CCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVR------------SWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~------------g~~VLvLEaG~~~ 78 (197)
..-+++|||+|+.|.-+|.+|++.. ..+|.|+|+|+..
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 4568999999999999999998721 1399999999975
No 301
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.20 E-value=0.15 Score=45.99 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|++...
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 69999999999999999997 79999999998653
No 302
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.14 E-value=0.14 Score=39.80 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+.|+|+|..|.++|..|++ .+.+|.|..+-.
T Consensus 2 I~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence 6899999999999999998 689999987754
No 303
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.97 E-value=0.15 Score=44.02 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|+..|.+|++ .|.+|.++.++.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLAR-AGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence 58999999999999999997 789999999975
No 304
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.79 E-value=0.17 Score=45.71 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-+++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCCC
Confidence 379999999999999999997 69999999998753
No 305
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.74 E-value=0.19 Score=45.65 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~l 205 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAPQL 205 (458)
T ss_pred cEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence 69999999999999999997 69999999998653
No 306
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.69 E-value=0.2 Score=43.32 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|+.+|.+|++ .|..|.++.++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence 59999999999999999998 799999998875
No 307
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.66 E-value=0.21 Score=39.95 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.|||+|..|..+|..++. .|.+|.++|..+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence 6799999999999999997 7999999998643
No 308
>PRK07846 mycothione reductase; Reviewed
Probab=92.53 E-value=0.21 Score=45.49 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence 379999999999999999997 79999999998753
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.45 E-value=0.2 Score=45.78 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~i 209 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQV 209 (471)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 68999999999999999997 79999999998753
No 310
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=92.39 E-value=0.21 Score=45.31 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-.++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR-LGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCc
Confidence 378999999999999999997 6999999999865
No 311
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.34 E-value=0.18 Score=49.25 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHHhh--CCCeEEEEecCCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEV--RSWNILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~--~g~~VLvLEaG~~~ 78 (197)
+||||+|+||..+|.+|.+. .+.+|.|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999998762 35799999998764
No 312
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.33 E-value=0.22 Score=49.15 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhh---CCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEV---RSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~~~ 78 (197)
.+||||+|+||..+|.+|.+. .+.+|.|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 699999999999999999752 35799999998764
No 313
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.27 E-value=0.21 Score=42.47 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=27.2
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
+.|||+|..|+.+|..|++ .|.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~-~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLE-AGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHH-CCCceEEEec
Confidence 7899999999999999998 6899999988
No 314
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.19 E-value=0.23 Score=44.48 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.+++++..
T Consensus 139 ~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 171 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSER 171 (427)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCcc
Confidence 68999999999999999997 7899999998865
No 315
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.15 E-value=0.24 Score=41.99 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
+.|||+|..|+.+|..|++ .|.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQ-AGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence 7899999999999999997 78999999873
No 316
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.15 E-value=0.23 Score=45.11 Aligned_cols=33 Identities=30% Similarity=0.225 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.|||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHG-LGSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 69999999999999999997 7999999999865
No 317
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.11 E-value=0.33 Score=35.14 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
|||+|.|..|..++..|.+ .+.+|+++|..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence 6999999999999999998 5779999999864
No 318
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=0.22 Score=45.85 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHhhC--CCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVR--SWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~--g~~VLvLEaG~~~ 78 (197)
++++|||+|++|.++|..|.+.+ ..+|-|+|.-...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 78999999999999999998732 2348999987664
No 319
>PRK06370 mercuric reductase; Validated
Probab=91.88 E-value=0.27 Score=44.66 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~ 206 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRR-FGSEVTVIERGPRL 206 (463)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCC
Confidence 68999999999999999997 79999999998753
No 320
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.86 E-value=0.28 Score=44.72 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~i 209 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLDRI 209 (466)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence 58999999999999999997 79999999998753
No 321
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.86 E-value=0.26 Score=38.99 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=26.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-.++|||+|.++.-+|..|++ .+.+|.++=+.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~-~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAK-AGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTT-TCSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHh-hCCEEEEEecCC
Confidence 579999999999999999998 589998887654
No 322
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.83 E-value=0.28 Score=44.46 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYAS-LGAEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCc
Confidence 68999999999999999997 69999999998753
No 323
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.80 E-value=0.28 Score=44.33 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 210 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAA-LGVKVTLINTRDRL 210 (461)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence 68999999999999999997 79999999998753
No 324
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.78 E-value=0.28 Score=44.66 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKN-YGVDVTIVEFLDRA 207 (466)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence 68999999999999999997 69999999987653
No 325
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.73 E-value=0.26 Score=44.54 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYE-RGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence 68999999999999999997 7999999999865
No 326
>KOG0399|consensus
Probab=91.57 E-value=0.23 Score=50.30 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
-..+.|||||++|+.+|..|-+ .|+.|.|-|+..+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRV 1820 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCc
Confidence 4689999999999999999997 89999999998764
No 327
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=91.37 E-value=0.33 Score=43.89 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 204 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSR-LGVKVTVFERGDRI 204 (460)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Confidence 69999999999999999997 69999999998753
No 328
>KOG0404|consensus
Probab=91.20 E-value=0.24 Score=41.87 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||||+|+-.+|..+++ +.++-||.|..-.
T Consensus 10 ~v~IiGSGPAa~tAAiYaar-aelkPllfEG~~~ 42 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAAR-AELKPLLFEGMMA 42 (322)
T ss_pred eEEEEccCchHHHHHHHHhh-cccCceEEeeeec
Confidence 68999999999999999997 7899999997644
No 329
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.01 E-value=0.28 Score=42.22 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 52 TAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 52 ~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.||+++|.+|++ .|.+|+|+|+..+.
T Consensus 1 iaGL~aA~~L~~-~G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAK-AGYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHH-TTTEEEEEESSSSS
T ss_pred ChHHHHHHHHHh-CCCCEEEEEcCCCC
Confidence 489999999997 79999999999875
No 330
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=90.86 E-value=0.38 Score=43.19 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-.++|||+|..|+-+|..|.+ .+.+|.++++++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH-LGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCcEEEEeCCcc
Confidence 368999999999999999987 6899999998864
No 331
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.84 E-value=0.36 Score=41.66 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|+.+|..|++ .|.+|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence 48899999999999999997 799999998865
No 332
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=90.80 E-value=0.4 Score=43.61 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|.++.
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ 203 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRSTK 203 (452)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence 69999999999999999997 7999999999875
No 333
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.68 E-value=0.42 Score=43.27 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRG-LGVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCCCC
Confidence 58999999999999999997 79999999998753
No 334
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.67 E-value=0.36 Score=38.82 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=25.9
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.|||.|..|+.+|..||+ .|++|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHH-TTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHh-CCCEEEEEeCChH
Confidence 6899999999999999998 7999999998765
No 335
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.65 E-value=0.43 Score=40.70 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-+.|||+|..|..+|..|++ .|.+|.+++...
T Consensus 5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 48899999999999999997 799999998754
No 336
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.37 E-value=0.45 Score=39.71 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-.++|||+|..|.-+|..|++ .+.+|.++++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~-~~~~V~~v~~~~~ 175 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR-IAKKVTLVHRRDK 175 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh-hcCEEEEEEeCcc
Confidence 379999999999999999997 6899999999864
No 337
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=90.37 E-value=0.47 Score=43.34 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 218 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRR-LGAEVTILEALPAF 218 (475)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCcc
Confidence 78999999999999999997 69999999998753
No 338
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.29 E-value=0.37 Score=43.68 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=34.8
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+.+|+|.||-|++-+.+|..|.+..+.++|.||+-+..
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 57999999999999999999998667999999999875
No 339
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.15 E-value=0.49 Score=43.45 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
..+|||+|..|+-+|.-++. -|.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence 48999999999999999997 79999999999875
No 340
>PRK06116 glutathione reductase; Validated
Probab=90.13 E-value=0.5 Score=42.67 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus 169 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~ 201 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNG-LGSETHLFVRGDA 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 68999999999999999997 6999999999875
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=0.5 Score=43.11 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.++|||+|.+|..+|..|.+ .|.+|.++|...
T Consensus 18 ~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLE-LGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 69999999999999999987 799999999764
No 342
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=89.99 E-value=0.54 Score=42.88 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~-~g~~Vtli~~~~~~ 212 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTE-LGVKVTLVSSRDRV 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcC
Confidence 68999999999999999997 79999999998753
No 343
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.79 E-value=0.5 Score=43.76 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|.++.
T Consensus 354 ~VvViGgG~~g~E~A~~L~~-~g~~Vtli~~~~~ 386 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAG-IVRHVTVLEFADE 386 (515)
T ss_pred EEEEECCcHHHHHHHHHHHh-cCcEEEEEEeCCc
Confidence 79999999999999999997 6899999998754
No 344
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.73 E-value=0.53 Score=40.11 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.|||+|.-|..+|..|++ .|.+|.+++..+.
T Consensus 4 V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~ 35 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQE 35 (288)
T ss_pred EEEECccHHHHHHHHHHHh-CCCcEEEEeCCHH
Confidence 7899999999999999997 6999999987643
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.67 E-value=0.5 Score=44.22 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-.++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTR-YASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCCc
Confidence 368999999999999999997 6999999999875
No 346
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.66 E-value=0.52 Score=40.85 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|+..|.+|++ .|.+|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAA-AGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence 48899999999999999998 699999999864
No 347
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.64 E-value=0.58 Score=42.12 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhh-------------CCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEV-------------RSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~-------------~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|.-+|..|++. ++++|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 789999999999999999851 36899999998653
No 348
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.61 E-value=0.61 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFAN-FGSKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 68999999999999999997 79999999998653
No 349
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=89.49 E-value=0.57 Score=45.01 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~-~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTA-LGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHh-CCCeEEEEeccCcc
Confidence 68999999999999999997 69999999998753
No 350
>PRK10262 thioredoxin reductase; Provisional
Probab=89.48 E-value=0.58 Score=40.16 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~-~~~~Vtlv~~~~~ 180 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDG 180 (321)
T ss_pred EEEEECCCHHHHHHHHHHHh-hCCEEEEEEECCc
Confidence 68999999999999999997 5899999999864
No 351
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.40 E-value=0.6 Score=40.42 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+.|||+|.-|+.+|..|++ .+.+|.++.+..
T Consensus 3 I~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSS-KKISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence 7899999999999999997 689999998743
No 352
>PLN02507 glutathione reductase
Probab=89.32 E-value=0.61 Score=43.07 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRG-MGATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEecCC
Confidence 68999999999999999997 6999999999864
No 353
>PRK13748 putative mercuric reductase; Provisional
Probab=89.27 E-value=0.6 Score=43.38 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.++|||+|..|+-+|..|++ .+.+|.||++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFAR-LGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEecCc
Confidence 69999999999999999997 699999999864
No 354
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.25 E-value=0.58 Score=43.30 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+++|||+|..|.-+|..|++ .+++|.|++.++..
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~-~~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAG-IVKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCEEEEEEECccc
Confidence 79999999999999999997 68999999988653
No 355
>PRK14694 putative mercuric reductase; Provisional
Probab=89.24 E-value=0.65 Score=42.33 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.++|||+|..|+-+|..|++ .+.+|.|++.+.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~-~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFAR-LGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence 68999999999999999997 799999999753
No 356
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.18 E-value=0.57 Score=45.80 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|++ .|++|.|+|.++..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~-~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQN-LGMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCeEEEEccCCch
Confidence 58999999999999999997 79999999988753
No 357
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.16 E-value=0.53 Score=40.95 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.|+|+|.-|+..|.+|++ .+..|+++-+.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~-~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAK-AGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHh-CCCeEEEEecHHH
Confidence 6899999999999999998 6788988888774
No 358
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.81 E-value=0.78 Score=35.91 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=26.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEe
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVE 73 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLE 73 (197)
-.++|||+|..|.-.|..|.+ .+.+|.||.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKD-TGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 458999999999999999997 799999993
No 359
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.59 E-value=0.7 Score=41.80 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=28.6
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.|||.|.+|..+|.-|.+ .|.+|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKA-QGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHH-CCCEEEEECCCCc
Confidence 7899999999999888887 7999999998654
No 360
>PLN02546 glutathione reductase
Probab=88.53 E-value=0.73 Score=43.38 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNG-LKSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCeEEEEEeccc
Confidence 79999999999999999997 6899999999865
No 361
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.41 E-value=0.79 Score=39.05 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|..+|..|++ .|.+|.+.+.-+
T Consensus 6 kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 37899999999999999997 799999998753
No 362
>PRK14727 putative mercuric reductase; Provisional
Probab=88.40 E-value=0.76 Score=42.08 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.++|||+|..|+-+|..|++ .+.+|.|+++..
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~-~G~~Vtlv~~~~ 221 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYAR-LGSRVTILARST 221 (479)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEEcCC
Confidence 69999999999999999997 799999999853
No 363
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.36 E-value=0.79 Score=39.08 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|+.+|..|+. .|.+|.++|.-+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 37899999999999999997 799999998754
No 364
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.29 E-value=0.8 Score=40.18 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-+.|||+|.-|+-.|..++. .|.+|.+.|.-+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALA-HGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 38899999999999999997 899999998754
No 365
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=88.24 E-value=0.61 Score=43.23 Aligned_cols=35 Identities=29% Similarity=0.145 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHhh---CCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEV---RSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~~ 77 (197)
-++-|||||.|++++|..|-++ ++.+|-+||.-..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 4678999999999999999875 5679999998654
No 366
>PRK04148 hypothetical protein; Provisional
Probab=88.20 E-value=0.56 Score=36.07 Aligned_cols=32 Identities=16% Similarity=0.396 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.+++||.| .|..+|..|++ .|..|+.+|..+.
T Consensus 19 kileIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKE-SGFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence 58999999 88888999997 6999999998765
No 367
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.00 E-value=0.85 Score=39.09 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-+.|||+|.-|.-.|..|+. .|.+|.++|..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence 47899999999999999997 7999999988765
No 368
>PTZ00058 glutathione reductase; Provisional
Probab=87.93 E-value=0.77 Score=43.24 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~-~G~~Vtli~~~~~ 271 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNR-LGAESYIFARGNR 271 (561)
T ss_pred EEEEECCcHHHHHHHHHHHH-cCCcEEEEEeccc
Confidence 58999999999999999997 7999999999875
No 369
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.83 E-value=0.88 Score=39.45 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|..+|.+|++ .|.+|.++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAAS-KGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 48999999999999999997 799999998854
No 370
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.79 E-value=0.94 Score=36.92 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
-.++|||+|..|...|..|.+ .|.+|.|++..
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLK-YGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEcCC
Confidence 468999999999999999997 68999999743
No 371
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=87.66 E-value=0.83 Score=45.13 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|++ .+.+|.|+|.++.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~-~G~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKN-LGVETHVIEFAPM 179 (847)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 57999999999999999997 6999999999875
No 372
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=87.63 E-value=0.88 Score=39.76 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCe-EEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~ 76 (197)
.++|||+|..|+-+|..|++ .+.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~-~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVL-LGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCeEEEEeecc
Confidence 58999999999999999986 5776 99998764
No 373
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.58 E-value=0.87 Score=41.05 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+++|||+|--|.++|+.|+++...+|++.++-..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 5899999999999999999854489999888744
No 374
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.53 E-value=0.89 Score=40.97 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-.++|||+|..|..+|..|++ .|.+|.+.|...
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 458999999999999999997 799999999864
No 375
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.37 E-value=0.94 Score=39.95 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
..-++|||.|..|+.+|..|++ .|+ ++.|+|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcc
Confidence 5679999999999999999998 786 7888988753
No 376
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.20 E-value=0.97 Score=38.32 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.+.|||+|.-|+.+|..|++ .|.+|.++|.-
T Consensus 5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH-CCCceEEEeCC
Confidence 48899999999999999997 68999999843
No 377
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.14 E-value=1 Score=38.59 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|+.+|..|++ .|.+|.+++...
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFAR-KGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence 38899999999999999997 789999998643
No 378
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.92 E-value=1.2 Score=36.25 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-++|+|.|-.|..+|.+|.+ .|.+|++.+...
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLE-EGAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 48999999999999999997 799999988654
No 379
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.54 E-value=1.2 Score=38.11 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|||+|.-|+.+|.+|++ .+..|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 47899999999999999997 689999998864
No 380
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=86.39 E-value=1.2 Score=41.22 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~~ 78 (197)
.++|||+|..|+-+|..|+. ..+.+|.|+|+++..
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 58999999999999976653 138899999998753
No 381
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=86.30 E-value=0.77 Score=33.16 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=28.2
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.-.++|||+|..|..-+..|.+ .|.+|.|+-.-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence 4568999999999999999997 78999998665
No 382
>PTZ00052 thioredoxin reductase; Provisional
Probab=86.21 E-value=1.1 Score=41.43 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.++|||+|..|+-+|..|++ .+.+|.|++..
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNE-LGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcC
Confidence 68999999999999999997 69999999874
No 383
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.21 E-value=1.3 Score=39.12 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
....++|||+|--|+.+|..|++ .|+ ++.++|....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCcc
Confidence 35789999999999999999997 787 8999998753
No 384
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.15 E-value=1.1 Score=41.35 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.++|||+|..|+-+|..|++ .+.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHH-hCCcEEEEEec
Confidence 58999999999999999997 69999999974
No 385
>KOG2495|consensus
Probab=86.12 E-value=0.41 Score=43.71 Aligned_cols=38 Identities=29% Similarity=0.594 Sum_probs=31.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHhh-------------CCCeEEEEecCCC
Q psy6708 40 PQEFDFIIVGAGTAGSILASRLAEV-------------RSWNILLVEAGGD 77 (197)
Q Consensus 40 ~~~~D~IIVGsG~aG~~~A~~Lae~-------------~g~~VLvLEaG~~ 77 (197)
...--++|||+|+.|.-+|.+|+.. ...+|.+|||.+.
T Consensus 216 kRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 216 KRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred hheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 4467899999999999999999851 2468999999984
No 386
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.04 E-value=1.3 Score=40.32 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|+-+|..|.+ .|.+|.|++++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~-~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALR-LGAEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence 69999999999999999997 6889999998754
No 387
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=85.85 E-value=1.4 Score=35.97 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=30.3
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG 76 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~ 76 (197)
....+.|||+|.-|+.+|..|++ .|. ++.++|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence 35679999999999999999997 787 688888763
No 388
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.74 E-value=1.4 Score=37.66 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+.|||+|.-|+.+|..|+. .|.+|.+.+..+
T Consensus 7 V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 8899999999999999997 799999998654
No 389
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.74 E-value=1.6 Score=33.06 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~ 78 (197)
++|||.|.-|+.+|..|+. .|. ++.+++.....
T Consensus 2 VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLAR-SGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCcC
Confidence 7899999999999999997 675 78999877554
No 390
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.61 E-value=1.2 Score=41.64 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+-.+||+|.|.-|..+|.+|.+ .+.+|+++|..+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~~~ 452 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSRTR 452 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCHHH
Confidence 5689999999999999999997 68999999987653
No 391
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.61 E-value=1.4 Score=37.75 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~ 78 (197)
....++|||.|-.|+.+|..|++ .| .++.|+|.....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar-~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR-TGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCEec
Confidence 35689999999999999999998 67 789999977543
No 392
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.40 E-value=1.8 Score=32.73 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=28.0
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCe-EEEEecC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG 75 (197)
.-.++|||+|-+|..++..|.+ .|.+ |.|+-+-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECC
Confidence 5579999999999999999998 4755 8888764
No 393
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.55 E-value=1.7 Score=35.48 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
-++|||+|..|...+..|.+ .|.+|.|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLK-AGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 68999999999999999997 79999999653
No 394
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=84.42 E-value=1.7 Score=37.70 Aligned_cols=31 Identities=32% Similarity=0.579 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCC-eEEEEecC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAG 75 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG 75 (197)
-+.|||+|..|+.+|..|++ .+. +|.++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~-~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAE-KELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 37899999999999999997 455 89999983
No 395
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=84.34 E-value=1.8 Score=35.30 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=27.2
Q ss_pred EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+.||| +|.-|..+|.+|++ .+.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAK-AGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 78997 79999999999997 689999987754
No 396
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.28 E-value=1.5 Score=39.33 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+|+|..|..+|..|.+ .+..|.++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCHH
Confidence 48999999999999999997 6899999998543
No 397
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.15 E-value=2 Score=34.09 Aligned_cols=32 Identities=38% Similarity=0.331 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
++|||.|.-|+.+|..|++ .|. ++.++|....
T Consensus 2 VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCEE
Confidence 7899999999999999997 686 5999998754
No 398
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.10 E-value=1.5 Score=39.37 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.|||.|..|+.+|..|++ .|.+|.+++....
T Consensus 3 I~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQE 34 (411)
T ss_pred EEEECCCchhHHHHHHHHh-cCCeEEEEECCHH
Confidence 7899999999999999997 7999999988654
No 399
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.04 E-value=1.7 Score=37.37 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.+.|||+|..|..+|.+|++ .|.+|.+..+...
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~~ 38 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASA-NGHRVRVWSRRSG 38 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 48899999999999999997 7999999987643
No 400
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.56 E-value=1.9 Score=38.48 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-+++|||+|..|..+|..|.. .|.+|.++++..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~-lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANG-LGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence 459999999999999999987 688999998753
No 401
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.35 E-value=1.8 Score=36.74 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+.|||.|.-|..+|..|.+ .|.+|.+++..+
T Consensus 3 I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 7899999999999999997 689999998754
No 402
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=83.08 E-value=1.9 Score=35.72 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCC---eEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSW---NILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~---~VLvLEaG~ 76 (197)
.++|+|+|.+|..+|..|.+ .|. +|.++++-+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~-~G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLA-AGAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHH-cCcCcceEEEEeCCC
Confidence 58999999999999999987 575 599999874
No 403
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.07 E-value=2.9 Score=28.91 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=27.3
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
-.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35999999999999999999833678888877
No 404
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.06 E-value=2.3 Score=34.56 Aligned_cols=36 Identities=31% Similarity=0.346 Sum_probs=30.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
...-++|||.|..|+.+|..|+. .|. ++.+++....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCEE
Confidence 36789999999999999999998 675 8899888654
No 405
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.01 E-value=2 Score=38.54 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
=.+||+|.|..|..+|..|.+ .+..|+++|.-+.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~-~~~~v~vid~~~~ 265 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEK-EGYSVKLIERDPE 265 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence 459999999999999999997 6899999998754
No 406
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.01 E-value=1.8 Score=39.15 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
.+.|||+|.-|++.|..||+ -|+.|+.+|.-+..
T Consensus 2 kI~viGtGYVGLv~g~~lA~-~GHeVv~vDid~~K 35 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAE-LGHEVVCVDIDESK 35 (414)
T ss_pred ceEEECCchHHHHHHHHHHH-cCCeEEEEeCCHHH
Confidence 36899999999999999998 69999999987653
No 407
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.92 E-value=1.9 Score=39.02 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-+.|||.|..|+.+|..|++ .|.+|.+++..+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~-~G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFAS-RQKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHh-CCCEEEEEeCCHH
Confidence 37899999999999999997 7999999987654
No 408
>PRK12831 putative oxidoreductase; Provisional
Probab=82.58 E-value=2.1 Score=39.16 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|.-+|..|.+ .|.+|.|+++...
T Consensus 283 ~VvVIGgG~va~d~A~~l~r-~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALR-LGAEVHIVYRRSE 315 (464)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence 79999999999999999987 6888999988653
No 409
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=82.43 E-value=3.2 Score=28.82 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=26.6
Q ss_pred EEEECCChHHHHHHHHHHhhCC---CeEEEE-ecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRS---WNILLV-EAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g---~~VLvL-EaG~~ 77 (197)
+.|||+|--|..++..|.+ .+ .+|+++ ++.+.
T Consensus 2 I~iIG~G~mg~al~~~l~~-~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLA-SGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHH-CCCCceeEEeeccCcHH
Confidence 5689999999999999997 67 888866 66544
No 410
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.42 E-value=2.3 Score=36.80 Aligned_cols=33 Identities=39% Similarity=0.448 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~ 77 (197)
.+.|||+|..|+.+|..|++ .+ ..|.+++....
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-RGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCCEEEEEECCch
Confidence 47899999999999999997 56 57999997653
No 411
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=82.38 E-value=3.4 Score=30.98 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~ 78 (197)
.-++|||.|.-|+.+|..|+. .|. ++.++|.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~-~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLAR-SGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHH-HTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHH-hCCCceeecCCccee
Confidence 458999999999999999998 575 78899887554
No 412
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=82.20 E-value=2.6 Score=33.43 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.8
Q ss_pred CcccEEEECCCh-HHHHHHHHHHhhCCCeEEEEecC
Q psy6708 41 QEFDFIIVGAGT-AGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 41 ~~~D~IIVGsG~-aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
+...++|||+|- .|..+|..|.+ .+.+|.++.+-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~-~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLN-RNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh-CCCEEEEEECC
Confidence 467899999996 69999999997 68889998875
No 413
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.06 E-value=1.7 Score=39.93 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|.+|+=+|..|++ ..++|.++.++..
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~-~a~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAK-VAKEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHH-hCCeEEEEEeecc
Confidence 69999999999999999997 5789999888653
No 414
>KOG2852|consensus
Probab=81.85 E-value=0.66 Score=40.58 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHhhC-----CCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVR-----SWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~-----g~~VLvLEaG~~ 77 (197)
-.++|||+|..|+..|+.|++.+ ...|.++|....
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI 50 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence 57899999999999999999832 278999998654
No 415
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.83 E-value=2.2 Score=39.65 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-+-|||+|.-|.-+|..|++ .|.+|.|.|+-+
T Consensus 7 kV~VIGaG~MG~gIA~~la~-aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAAS-AGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 38899999999999999997 799999998764
No 416
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.04 E-value=2.5 Score=38.07 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++|+|+|..|..+|..|++ .|.+|.+.|...
T Consensus 8 v~v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHK-LGANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 7999999999999999997 799999998754
No 417
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=80.87 E-value=2.8 Score=36.13 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHHhhCC--CeEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRS--WNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~ 77 (197)
+.|||+|..|..+|..|++ .+ ..|.+++.-..
T Consensus 3 I~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVN-QGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcc
Confidence 7899999999999999997 46 47999998544
No 418
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.85 E-value=2.3 Score=41.26 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
--+.|||+|..|.-+|..++. .|.+|.|+|.-+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 358899999999999999997 7999999997654
No 419
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=80.74 E-value=2.3 Score=41.24 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.--+.|||+|..|+-+|..++. +|..|.++|.-..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 3458999999999999999997 7999999997643
No 420
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=80.73 E-value=3.1 Score=30.64 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=26.6
Q ss_pred EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
+.||| +|..|..+...|.+.+...++.+-....
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred EEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 67999 9999999999999877777665554443
No 421
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=80.67 E-value=2.8 Score=38.05 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.5
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~ 76 (197)
=.++|||+|..|.-+|..|++ .+. +|.++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~-~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKR-LGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence 379999999999999999987 465 899998864
No 422
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=80.66 E-value=2.6 Score=38.98 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~ 77 (197)
.+.|||.|..|+.+|..||+. .+.+|+.+|....
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 388999999999999999972 2588999987654
No 423
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=80.64 E-value=2.8 Score=36.05 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-.++|||.|..|..+|.+|.. .|.+|.+.++-.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~-~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSA-LGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 468999999999999999997 689999998754
No 424
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=80.61 E-value=2.5 Score=36.27 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=27.3
Q ss_pred EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
+.|||+|..|..+|..|+. .+. .|.|+|....
T Consensus 1 I~IIGaG~vG~~ia~~la~-~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-KELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 4699999999999999997 455 9999998754
No 425
>PRK06223 malate dehydrogenase; Reviewed
Probab=80.59 E-value=3 Score=35.77 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~ 76 (197)
.+.|||+|..|..+|..|++ .+. .|.|+|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~-~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLAL-KELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEEECCC
Confidence 58999999999999999997 454 899999743
No 426
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=80.18 E-value=2.7 Score=38.85 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+-|||+|.-|...|..|+. .|.+|.|.+.-+
T Consensus 6 kIavIG~G~MG~~iA~~la~-~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL-AGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 37899999999999999997 799999998754
No 427
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.07 E-value=2.9 Score=37.99 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.-.++|+|.|+.|..+|..+.. .|.+|+++|.-+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChh
Confidence 3468999999999999999886 6889999988654
No 428
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=79.81 E-value=2.5 Score=38.57 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
=.|+|||+|.+|.-+|..|++ .+.+|.++=+.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~-~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAE-VGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHh-cCCeeEEEecCCCc
Confidence 478999999999999999998 57999888877654
No 429
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=79.26 E-value=3.1 Score=38.73 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-+-|||+|.-|.-+|..|+. +|..|.|.|.-+.
T Consensus 9 ~V~VIGaG~MG~gIA~~la~-aG~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQ-AGHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 37899999999999999997 7999999886543
No 430
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=79.12 E-value=2.7 Score=37.22 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=25.8
Q ss_pred EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
++|+|+|..|..+|..|+++... +|+|..+-..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~ 34 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE 34 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH
Confidence 68999999999999999985445 8888877654
No 431
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.78 E-value=2.9 Score=39.89 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+-.+||+|.|..|..+|..|.+ .+.+|.+||..+..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~ 435 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDH 435 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHH
Confidence 4679999999999999999997 68999999998763
No 432
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=78.77 E-value=4.1 Score=35.61 Aligned_cols=34 Identities=15% Similarity=0.408 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
.-+.|||+|..|..+|..|+. .+. .|.|+|.-+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-KNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEeCCCc
Confidence 468999999999999999986 574 8999997654
No 433
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=78.68 E-value=4.3 Score=31.78 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=28.4
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
..-++|+|+|.+|.-+|.-|.. -|.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~-lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKG-LGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH-TT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhH-CCCEEEeccCCH
Confidence 3679999999999999999887 799999998764
No 434
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=78.44 E-value=3.6 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~ 76 (197)
-.++|||+|-+|..+|..|++ .|. +|.|+++-.
T Consensus 128 k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCH
Confidence 368999999999999999997 565 788987753
No 435
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=78.28 E-value=3.5 Score=35.75 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=27.2
Q ss_pred EEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708 45 FIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~ 78 (197)
++|||+|.+|..+|.+|.+ .+...|.++......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 5899999999999998876 456778777776543
No 436
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=78.23 E-value=4.1 Score=33.43 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=30.4
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
...-++|||.|-.|+.+|..|++ .|. ++.++|....
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCEe
Confidence 35689999999999999999997 675 5888888743
No 437
>PLN02206 UDP-glucuronate decarboxylase
Probab=78.08 E-value=14 Score=33.70 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=26.4
Q ss_pred cEEEECC-ChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 44 DFIIVGA-GTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 44 D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
-++|.|+ |.-|..++.+|.+ .|.+|.++++
T Consensus 121 kILVTGatGfIGs~Lv~~Ll~-~G~~V~~ld~ 151 (442)
T PLN02206 121 RVVVTGGAGFVGSHLVDRLMA-RGDSVIVVDN 151 (442)
T ss_pred EEEEECcccHHHHHHHHHHHH-CcCEEEEEeC
Confidence 4999995 9999999999998 6899998864
No 438
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.93 E-value=4.3 Score=33.92 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=29.1
Q ss_pred EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
++|.| +|..|..++.+|.+ .|.+|..+.+....
T Consensus 3 ILVtG~tGfiG~~l~~~L~~-~g~~V~~~~r~~~~ 36 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDG 36 (314)
T ss_pred EEEEcCcccHHHHHHHHHHh-CCCeEEEEeCCCcc
Confidence 78999 59999999999998 59999999987653
No 439
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=77.78 E-value=4.7 Score=31.11 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=27.5
Q ss_pred EEEECC-ChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVGA-GTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
++|+|+ |..|..++.+|.+ .+.+|.++=+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~-~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLR-RGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHH-CCCEEEEEecCch
Confidence 689996 9999999999998 5899988877654
No 440
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.20 E-value=3.3 Score=39.33 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
+-.+||+|.|..|..+|..|.+ .+.+|++||..+..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~ 435 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA-NKMRITVLERDISA 435 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh-CCCCEEEEECCHHH
Confidence 4579999999999999999997 68999999987653
No 441
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=76.95 E-value=3.5 Score=34.98 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
+-|||.|..|..+|.+|++ .|.+|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~-~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAK-AGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 6799999999999999997 699999998764
No 442
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=76.94 E-value=3.3 Score=40.34 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
--+.|||+|.-|+-+|..++. .|.+|.++|.-+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHH
Confidence 358999999999999999997 7999999987654
No 443
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=76.70 E-value=4.5 Score=34.13 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.++|+|+|-+|..+|..|++ .+.+|.++.+..
T Consensus 119 ~vliiGaGg~g~aia~~L~~-~g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLK-ADCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 58999999999999999997 688999987653
No 444
>PRK08017 oxidoreductase; Provisional
Probab=76.63 E-value=4.9 Score=32.66 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=26.8
Q ss_pred EEEECC-ChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGA-GTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++|+|+ |.-|..+|.+|++ .|.+|.++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~-~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKR-RGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 899998 9999999999997 688998887643
No 445
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.52 E-value=4.5 Score=36.71 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.--++|||.|..|..+|.+|.. .|.+|.++|..+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCChh
Confidence 3479999999999999999986 6899999987664
No 446
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=76.52 E-value=3.9 Score=39.56 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
--+.|||+|.-|+-+|..++.+.|..|.++|.-+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 35899999999999999988437999999987653
No 447
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=76.43 E-value=5.4 Score=30.95 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=26.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+-+||-|..|..+|.+|.+ .|.+|.+.++-+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~-~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAK-AGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHh-cCCeEEeeccch
Confidence 36799999999999999997 799999998664
No 448
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=76.38 E-value=4.6 Score=34.12 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=29.2
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCC-----------CeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRS-----------WNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-----------~~VLvLEaG~~ 77 (197)
....++|||+|--|+.++..|++ .| .++.|+|....
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar-~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLAR-LHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHH-ccccccccCCCCCCEEEEECCCEE
Confidence 46789999999999999999997 32 37788776644
No 449
>PLN02712 arogenate dehydrogenase
Probab=76.32 E-value=7.1 Score=37.68 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
-.+.|||.|..|..+|..|.+ .|.+|.++++.
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~-~G~~V~~~dr~ 84 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLIS-QGHTVLAHSRS 84 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 459999999999999999997 68899888764
No 450
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=76.30 E-value=4.6 Score=35.73 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCC--------CeEEEEec
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS--------WNILLVEA 74 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g--------~~VLvLEa 74 (197)
.+.|||+|.-|.++|..|++ .+ .+|.+-.+
T Consensus 1 kI~VIGaG~wGtALA~~la~-ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE-NARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCcccccCCceEEEEEe
Confidence 36899999999999999997 46 89988876
No 451
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=75.96 E-value=5.2 Score=31.78 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=27.0
Q ss_pred ccEEEECC-ChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 43 FDFIIVGA-GTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 43 ~D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
-.++|+|+ |..|..+|..|++ .+.+|.++.+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAR-EGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 35899996 9999999999997 68899888654
No 452
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=75.51 E-value=5.5 Score=32.25 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
..-++|||.|.-|+.+|..|+. .|. ++.+++....
T Consensus 19 ~s~VlviG~gglGsevak~L~~-~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVL-AGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEECCcC
Confidence 5789999999999999999997 785 5888887654
No 453
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.45 E-value=4.1 Score=39.50 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
--+.|||+|..|+-+|..++...|..|.++|.-+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3589999999999999999833799999999754
No 454
>PRK07326 short chain dehydrogenase; Provisional
Probab=75.26 E-value=5.2 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=26.3
Q ss_pred cEEEEC-CChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVG-AGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
=++|+| +|.-|..+|.+|++ .|.+|+++.+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~-~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLA-EGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHH-CCCEEEEeeCCH
Confidence 377887 49999999999997 688999987643
No 455
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.24 E-value=5 Score=35.69 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=29.7
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~ 76 (197)
..-++|||+|-.|+.+|..|+. .|. ++.+++...
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~-~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAA-AGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 5689999999999999999997 675 788888774
No 456
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=75.20 E-value=11 Score=34.49 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=30.9
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCC---eEEEEecCCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSW---NILLVEAGGDP 78 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~---~VLvLEaG~~~ 78 (197)
++..+++.|+|+||+.+|..|.. .+. +|.++|+-+..
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~-~g~~~~~i~~~D~~G~l 237 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVA-AGVKEENIFVVDRKGLL 237 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHH-hCCCcccEEEEecCCcc
Confidence 46679999999999999999986 454 79999987654
No 457
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.18 E-value=5.1 Score=35.05 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~ 78 (197)
++|||+|.-|+.+|..|+. .|+ ++.+++.+...
T Consensus 2 VLIvGaGGLGs~vA~~La~-aGVg~ItlvD~D~Ve 35 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLG-WGVRHITFVDSGKVS 35 (307)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCeEEEECCCEec
Confidence 7899999999999999997 674 68888877543
No 458
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=75.01 E-value=5.1 Score=34.36 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCe-EEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~ 76 (197)
-++|+|+|-+|..+|..|++ .|.+ |.|+.+..
T Consensus 128 ~vlI~GAGGagrAia~~La~-~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCAL-DGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCc
Confidence 47999999999999999997 5765 99987753
No 459
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=74.87 E-value=5.2 Score=34.82 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~ 76 (197)
...+.|||+|..|+.+|..|+. .+. .++|+|.-.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-QGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCC
Confidence 3478999999999999999997 455 689999743
No 460
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=74.83 E-value=4.6 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCe-EEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~ 77 (197)
.++|||+|..|.-+|..+.+ .|.+ |.|+++...
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r-~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKR-LGAERVTIVYRRSE 605 (752)
T ss_pred cEEEECCcHHHHHHHHHHHH-cCCCeEEEeeecCc
Confidence 69999999999999999887 5765 999998754
No 461
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=74.55 E-value=4.8 Score=38.72 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~ 78 (197)
..-++|||+|.-||.+|..|+. .|+ ++.+++.+...
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~D~Ve 374 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDNGKVS 374 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCEEC
Confidence 4679999999999999999997 675 68888887653
No 462
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=74.39 E-value=5 Score=31.86 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|+|-|..|.-+|.+|.. .|.+|.|.|..+.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~-~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRG-LGARVTVTEIDPI 57 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TT-EEEEE-SSHH
T ss_pred EEEEeCCCcccHHHHHHHhh-CCCEEEEEECChH
Confidence 58999999999999999987 7999999999764
No 463
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.35 E-value=5.8 Score=34.21 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-.++|||.|..|..++..|.. .|.+|.+.++-.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKA-LGANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 469999999999999999997 689999998764
No 464
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=74.33 E-value=4.9 Score=37.62 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
-++|+|+|-+|..+|..|++ .|.+|.++.+-
T Consensus 381 ~vlIlGaGGagrAia~~L~~-~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKE-KGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 58999999999999999998 68899998663
No 465
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=74.19 E-value=5.4 Score=32.84 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=29.4
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
..-++|||.|.-|+.+|..|+. .|. ++.++|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~-~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAA-AGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCEE
Confidence 5689999999999999999998 675 6778776643
No 466
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=74.03 E-value=5.1 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~ 76 (197)
.+.|||.|..|..+|..|.+ .+ .+|.++++.+
T Consensus 8 ~I~IIG~G~mG~sla~~l~~-~g~~~~V~~~dr~~ 41 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRR-LGLAGEIVGADRSA 41 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHh-cCCCcEEEEEECCH
Confidence 48999999999999999997 56 4888887754
No 467
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=73.92 E-value=4.7 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=28.8
Q ss_pred cccEEEEC-CChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 42 EFDFIIVG-AGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 42 ~~D~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
.--+.||| .|.-|..+|..|.+ .|..|.+.++-
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~-~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTL-SGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHH-CCCeEEEeCCC
Confidence 34589999 89999999999997 78999999864
No 468
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=73.88 E-value=18 Score=32.83 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=27.4
Q ss_pred ccEEEEC-CChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708 43 FDFIIVG-AGTAGSILASRLAEVRSWNILLVEAG 75 (197)
Q Consensus 43 ~D~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG 75 (197)
=-++|.| +|..|..++.+|.+ .|.+|.++.+.
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~-~G~~V~~ldr~ 153 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIG-RGDEVIVIDNF 153 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 3589998 49999999999997 68999999864
No 469
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=73.62 E-value=5.8 Score=36.23 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
--++|+|.|..|..+|.+|.. .|.+|.+.|..+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCch
Confidence 359999999999999999987 6899999987654
No 470
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=73.61 E-value=5.2 Score=36.67 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHHhhCCC------eEEEEecCCCC
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSW------NILLVEAGGDP 78 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~------~VLvLEaG~~~ 78 (197)
++|||+|.-||-++..|+. .|+ ++.|++.....
T Consensus 2 VlvVGaGGlGcE~lKnLal-~Gv~~g~~G~I~IvD~D~Ie 40 (435)
T cd01490 2 VFLVGAGAIGCELLKNFAL-MGVGTGESGEITVTDMDNIE 40 (435)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCcCCCCeEEEECCCCcc
Confidence 7899999999999999997 677 88888877653
No 471
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=73.56 E-value=6.9 Score=29.47 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~ 76 (197)
.++|||+|..|..+|..|.+ .+ .+|.++.+..
T Consensus 21 ~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~~ 53 (155)
T cd01065 21 KVLILGAGGAARAVAYALAE-LGAAKIVIVNRTL 53 (155)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCH
Confidence 58999999999999999997 54 7888887654
No 472
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.55 E-value=6.6 Score=31.75 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=27.7
Q ss_pred cEEEECC-ChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGA-GTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-++|.|+ |..|..+|..|++ .|.+|+++.+..
T Consensus 8 ~vlItGasg~iG~~la~~l~~-~g~~vi~~~r~~ 40 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAR-EGASVVVADINA 40 (250)
T ss_pred EEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 4899997 9999999999998 699999997753
No 473
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=73.50 E-value=4.7 Score=35.27 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-+-|||+|.-|.-.|..++. .|..|.+.|.-..
T Consensus 5 kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~ 37 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPE 37 (307)
T ss_pred EEEEEcccchhHHHHHHHhh-cCCceEEEeCCHH
Confidence 36799999999999999997 7899999988743
No 474
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=73.35 E-value=5.6 Score=33.76 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+-|||.|.-|..+|.+|++ .+.+|++.++.+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~-~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLK-AGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 47899999999999999997 789999887653
No 475
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=73.28 E-value=6.2 Score=33.52 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~ 77 (197)
-.++|+|+|-+|..++..|++ .| .+|.|+.+-..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~-~g~~~V~v~~R~~~ 158 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLD-LGVAEITIVNRTVE 158 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHH-cCCCEEEEEeCCHH
Confidence 358999999999999999997 67 78999977543
No 476
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.21 E-value=5.8 Score=34.78 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
.-.+.|||+|.-|+++|..|++ .+ .|.++-+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~-~g-~v~l~~~ 37 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR-RG-PTLQWVR 37 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CC-CEEEEeC
Confidence 3459999999999999999998 56 4544433
No 477
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=72.69 E-value=6.6 Score=36.42 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
--++|||.|..|..+|.+|.. .|.+|++.|..+.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a-~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRG-FGARVVVTEIDPI 288 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 368999999999999999986 6899999988654
No 478
>PLN02494 adenosylhomocysteinase
Probab=72.43 E-value=6.7 Score=36.35 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.-.++|+|.|..|..+|.++.. .|.+|+++|..+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka-~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA-AGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 3478999999999999999986 6899999998764
No 479
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=72.30 E-value=5.8 Score=32.85 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=25.8
Q ss_pred EEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 45 FIIVGAGTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
+.|+|.|--|..+|.+|+. .++.|.+--+
T Consensus 4 ~~i~GtGniG~alA~~~a~-ag~eV~igs~ 32 (211)
T COG2085 4 IAIIGTGNIGSALALRLAK-AGHEVIIGSS 32 (211)
T ss_pred EEEeccChHHHHHHHHHHh-CCCeEEEecC
Confidence 6899999999999999997 7999988733
No 480
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.01 E-value=7.3 Score=33.49 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~ 78 (197)
--++|||.|.-|..+|..|.+ .|..|-++......
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~-~g~~v~i~g~d~~~ 38 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKE-AGLVVRIIGRDRSA 38 (279)
T ss_pred cEEEEECCchHHHHHHHHHHH-cCCeEEEEeecCcH
Confidence 358999999999999999998 79998888777653
No 481
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.96 E-value=7.4 Score=35.12 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
-+.|+|.|-+|..+|..|++ .|.+|.+.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~-~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRK-NGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 48999999999999999997 7999999987654
No 482
>PRK08328 hypothetical protein; Provisional
Probab=71.82 E-value=6.6 Score=32.55 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
..-++|||.|-.|+.+|..|+. .|. ++.+++....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~-~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAA-AGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcc
Confidence 5679999999999999999998 674 6778866543
No 483
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=71.76 E-value=6.3 Score=33.77 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+-|||.|.-|..+|.+|++ .|.+|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~-~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLK-QGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 47899999999999999997 789999998754
No 484
>PRK06057 short chain dehydrogenase; Provisional
Probab=71.56 E-value=7.6 Score=31.72 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=27.4
Q ss_pred cEEEECC-ChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGA-GTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-++|+|+ |.-|..+|.+|++ .|.+|.++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~-~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAA-EGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4889998 8889999999997 699999987654
No 485
>KOG3923|consensus
Probab=71.41 E-value=5.1 Score=35.15 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.4
Q ss_pred cccEEEECCChHHHHHHHHHHh------hCCCeEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAE------VRSWNILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae------~~g~~VLvLEaG~~ 77 (197)
.-++.|||+|..|++.|..+.+ .+..+|.+++-...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 5689999999999999977765 13467778765544
No 486
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=71.03 E-value=6.6 Score=33.89 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=28.8
Q ss_pred cccEEEECCChHHHHHHHHHHhh---CCC-------eEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEV---RSW-------NILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~---~g~-------~VLvLEaG~~~ 78 (197)
+--++|+|+|.||.-+|..|.+- .|. ++.++|+-+..
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll 71 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLL 71 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeE
Confidence 45679999999999999998751 143 88898887653
No 487
>PRK08177 short chain dehydrogenase; Provisional
Probab=71.00 E-value=8.9 Score=30.72 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=26.8
Q ss_pred EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
++|.| +|.-|..+|.+|++ .|.+|+++.+.+.
T Consensus 4 vlItG~sg~iG~~la~~l~~-~G~~V~~~~r~~~ 36 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLE-RGWQVTATVRGPQ 36 (225)
T ss_pred EEEeCCCchHHHHHHHHHHh-CCCEEEEEeCCCc
Confidence 67777 67889999999997 6899999988754
No 488
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.98 E-value=12 Score=33.96 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=26.1
Q ss_pred cEEEECC-ChHHHHHHHHHHhhCCCeEEEEec
Q psy6708 44 DFIIVGA-GTAGSILASRLAEVRSWNILLVEA 74 (197)
Q Consensus 44 D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEa 74 (197)
-++|.|+ |.-|..++.+|++ .|.+|.++++
T Consensus 49 ~VLVTGatGfIGs~Lv~~L~~-~G~~V~~~d~ 79 (442)
T PLN02572 49 KVMVIGGDGYCGWATALHLSK-RGYEVAIVDN 79 (442)
T ss_pred EEEEECCCcHHHHHHHHHHHH-CCCeEEEEec
Confidence 4889985 9999999999998 6899999863
No 489
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=70.81 E-value=10 Score=28.87 Aligned_cols=33 Identities=36% Similarity=0.508 Sum_probs=26.6
Q ss_pred cEEEECC-ChHHHHHHHHHHhhC-CCeEEEEecCC
Q psy6708 44 DFIIVGA-GTAGSILASRLAEVR-SWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGs-G~aG~~~A~~Lae~~-g~~VLvLEaG~ 76 (197)
.+.|||+ |.-|..+|..|.... ...+.|++.-.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 3789999 999999999999732 24588888764
No 490
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=70.61 E-value=7.2 Score=33.43 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+-|||.|..|..+|.+|++ .+.+|.+.++-+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~-~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK-RGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 37899999999999999997 799999887654
No 491
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.60 E-value=7.1 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.+.|+|.|.+|..+|..|.+ .|.+|.+.|...
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~-~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVK-LGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 58999999999999999987 799999999764
No 492
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=70.50 E-value=7.2 Score=33.76 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
.-.++|||+|..|..+|..|.+....+|.++++-.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 44699999999999999999863346888888754
No 493
>PRK12828 short chain dehydrogenase; Provisional
Probab=70.47 E-value=7.8 Score=30.84 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=26.3
Q ss_pred EEEECC-ChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 45 FIIVGA-GTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 45 ~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
++|.|+ |.-|..+|.+|++ .|.+|+++.+..
T Consensus 10 vlItGatg~iG~~la~~l~~-~G~~v~~~~r~~ 41 (239)
T PRK12828 10 VAITGGFGGLGRATAAWLAA-RGARVALIGRGA 41 (239)
T ss_pred EEEECCCCcHhHHHHHHHHH-CCCeEEEEeCCh
Confidence 788875 8899999999997 699999997743
No 494
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=70.42 E-value=7.3 Score=34.79 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
..-++|||.|..|+.+|..|+. .|. ++.+++....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~-~Gvg~i~ivD~D~v 76 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLAS-AGVGTITLIDDDTV 76 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEeCCEE
Confidence 5689999999999999999997 674 8888887754
No 495
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=70.40 E-value=7.7 Score=32.45 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708 42 EFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP 78 (197)
Q Consensus 42 ~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~ 78 (197)
...++|||.|..|+.+|..|+. .| .++.++|.....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAA-AGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCccc
Confidence 5789999999999999999997 67 467888777554
No 496
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=70.01 E-value=9.7 Score=30.03 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=30.7
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
..--+.|||.|..|..+|.+|.. -|.+|+..++-..
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~-fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKA-FGMRVIGYDRSPK 70 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHH-TT-EEEEEESSCH
T ss_pred CCCEEEEEEEcCCcCeEeeeeec-CCceeEEecccCC
Confidence 35678999999999999999996 7999999988765
No 497
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=69.80 E-value=8.6 Score=32.06 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=25.6
Q ss_pred ccEEEECCChHHHHHHHHHHhhCCCeEEEE
Q psy6708 43 FDFIIVGAGTAGSILASRLAEVRSWNILLV 72 (197)
Q Consensus 43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvL 72 (197)
-.++|||+|..+.-=+..|.+ .+.+|.|+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~-~gA~VtVV 54 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLK-KGCYVYIL 54 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEE
Confidence 469999999999998988887 78889888
No 498
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=69.67 E-value=8 Score=32.40 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=30.5
Q ss_pred CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708 41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD 77 (197)
Q Consensus 41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~ 77 (197)
....++|||.|.-|+.+|..|+. .|. ++.+++....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~-~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAA-AGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCEE
Confidence 36789999999999999999997 674 7888877654
No 499
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=69.56 E-value=8.6 Score=35.38 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77 (197)
Q Consensus 44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~ 77 (197)
.++|||+|..|.-+|..+.+.-..+|.++|..+.
T Consensus 285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 6999999999999987776533467999998764
No 500
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.48 E-value=9.2 Score=30.76 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.1
Q ss_pred cEEEECC-ChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708 44 DFIIVGA-GTAGSILASRLAEVRSWNILLVEAGG 76 (197)
Q Consensus 44 D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~ 76 (197)
-++|+|+ |.-|..+|.+|++ .|.+|+++.+..
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~-~G~~vi~~~r~~ 39 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQ-KGAKLALIDLNQ 39 (253)
T ss_pred EEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 4789997 9999999999997 688998887653
Done!