RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6708
(197 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 128 bits (324), Expect = 7e-35
Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 24/159 (15%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---------PENRGQL 91
E+D+II+GAG+AG +LA+RL+E ++LL+EAGG +F P G+
Sbjct: 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQ-GKR 62
Query: 92 YGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---- 147
Y +WA+ TE + M +N+R P GK LGGSSSI+ + Y RG++ DYD W
Sbjct: 63 Y----NWAYETEPEPHM----NNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELP 114
Query: 148 GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVK 186
G + + + + L YFKK+E T +++ G GP V
Sbjct: 115 GLEGWSYADCLPYFKKAE--TRDGGEDDYRGGDGPLSVT 151
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 111 bits (280), Expect = 7e-29
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRG----QLYGSSMD 97
E+D++IVG+G+AGS+LA+RL++ ++L++EAG + + + G D
Sbjct: 7 EYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAG--GPDRRPLIQMPAAYAFLMNGPRYD 63
Query: 98 WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGY----DAFK 153
W F TE + + + P GK LGGSSSI+ + Y RG D+D W +
Sbjct: 64 WGFRTEPEPHL----RGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWP 119
Query: 154 FDNVLKYFKKSEFMTDSSKYNE--FHGTQGPFVVKPSPRVDKTFD 196
+D+VL YFK++E + + +HG GP V P +
Sbjct: 120 YDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIAR 164
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 105 bits (263), Expect = 1e-26
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 14/154 (9%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY----GSSMDWA 99
D+II+G G+AGS+LA RL+E S ++L++EAGG + L +W
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 100 FVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFD 155
+ TE + M +N+R GK LGGSSSI+ + Y RG+ DY++W G +++ +
Sbjct: 61 YETEPEPHM----NNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116
Query: 156 NVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSP 189
+ L Y+K+ E T + + G GP V+ P
Sbjct: 117 DCLPYYKRLE-TTFGGE-KPYRGHDGPIKVRRGP 148
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 94.9 bits (236), Expect = 6e-23
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY------GSSMD 97
D ++VG G+AG ++A+RL+E S + ++EAG + S P S +
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 98 WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNV 157
W + E G + + I G+ LGGS +++ Y+ R D+D W + +D+V
Sbjct: 62 WRYGVELTDG-----PRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDDV 116
Query: 158 LKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVD 192
L +F+ E TD HGT GP V+ + +D
Sbjct: 117 LPHFRAIE--TDLDFDGPLHGTAGPIPVRRTAELD 149
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 61.5 bits (150), Expect = 7e-12
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 104 EQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLK 159
E G S++ +R +P G +GG SS++ R + DEW G + + +D+ L
Sbjct: 6 EGGGSAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLP 65
Query: 160 YFKKSE 165
Y K E
Sbjct: 66 YMDKVE 71
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 55.2 bits (133), Expect = 3e-09
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 19/115 (16%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP---SNISYFPENRGQLYGSSMDWA 99
+D+I+VG GTAG LA+ L++ ++++LL+E GG P +N+S+ L +S A
Sbjct: 56 YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLENFHIGLADTSPTSA 113
Query: 100 FVTEEQSGMFLSLS---NQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDA 151
S F+S N R + LGG + I++ +Y+R +R + G+DA
Sbjct: 114 ------SQAFISTDGVINARARV-----LGGGTCINAGFYSRASTRFIQKAGWDA 157
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
E+D +IVGAG AGS A RLA+ ++L++E G +P
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP 38
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 41.3 bits (98), Expect = 1e-04
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGD 77
Q +D I++GAG AG LA+R A + + L+E GG
Sbjct: 3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGLLGGT 42
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 38.4 bits (90), Expect = 0.001
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 44 DFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISYFPENR 88
D +IVGAG AG +LA RL + R +LL++AG P FP N
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPP----FPNNH 42
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
D +IVG G G LA LA + L+EA
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEAT 32
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 37.6 bits (88), Expect = 0.003
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVE 73
++D +I+G G G+ A L+E ++ L+E
Sbjct: 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 37.3 bits (87), Expect = 0.003
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 26 TTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
T + +P P +D IVG G G LA+ L + I L+EA
Sbjct: 2 TLTAATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEA 49
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 37.2 bits (87), Expect = 0.003
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
+E+D +++GAG AG + A R A+ + LVE G
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 47 IVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
IVGAG +G + A LA+ R ++L++E
Sbjct: 1 IVGAGLSGLVAAYLLAK-RGKDVLVLEKRDRI 31
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 36.7 bits (86), Expect = 0.006
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+++D I++GAG AG + A R A+ + L+E G
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 36.1 bits (84), Expect = 0.006
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 43 FDFIIVGAGTAGSILASRLAE 63
+D ++VGAG AG+ A RLA+
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD 21
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 36.7 bits (86), Expect = 0.006
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 30 PHTPQDPDQW------PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
W P+ D I+G G AG+ LA LA R W + L EA
Sbjct: 242 TLPAPLAAPWFARPGSPKARDAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 35.7 bits (83), Expect = 0.007
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYG 93
D +++G G G A LA R ++ L+E G S S N G L+
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGDLASGASGR--NAGLLHP 47
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 36.0 bits (84), Expect = 0.008
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 43 FDFIIVGAGTAGSILA---SRLAEVRSWNILLVEA 74
D IIVG G AG+ LA SRL+ + L+EA
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSH-GGLPVALIEA 37
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 36.1 bits (84), Expect = 0.009
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 36 PDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
P P E D +IVG G AG LA++L+ +VE
Sbjct: 26 PADLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVE 63
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 35.4 bits (82), Expect = 0.012
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQL 91
D +I+G G AG A RLA + L+E G Y NRG L
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR-LGLKVALIEREG---GTCY---NRGCL 41
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 34.9 bits (80), Expect = 0.021
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP--SNISYFPENRGQLYGSSMD 97
FD IIVGAG AGS+ A LA +L++E G N++ G+LY S++
Sbjct: 6 FDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNSAGAKNVT-----GGRLYAHSLE 56
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 34.4 bits (79), Expect = 0.027
Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
FD+IIVGAG +G +LA+ LA++ +L+VE
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVE 31
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 34.3 bits (79), Expect = 0.027
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
D IVGAG AG LA LA ++ L+E
Sbjct: 3 LDVAIVGAGPAGLALALALAR-AGLDVTLLER 33
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 34.5 bits (79), Expect = 0.027
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
+ D +I+G G G A LAE R ++ ++EAG
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGE 37
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 33.8 bits (78), Expect = 0.037
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENR 88
D IIVG G G LA L+ + I L+EA PS + R
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA-NSPSAAQPGFDAR 44
>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 33.8 bits (78), Expect = 0.047
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRG 89
D +IVGAG G LA LA R + L+E +P FP +RG
Sbjct: 1 YTTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP-----FPGSRG 44
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 33.5 bits (77), Expect = 0.058
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
FD++IVGAG +G+++A +A +L+VE
Sbjct: 2 FDYLIVGAGLSGAVIA-EVAAQLGKRVLIVEK 32
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 33.3 bits (76), Expect = 0.059
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 45 FIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDPSNISYFP 85
+IVG G AG A+ L + + I L+ G SY+
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLI---GREPKYSYYR 39
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 33.7 bits (77), Expect = 0.061
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
++D IIVG AG +LA L++ + +L++E
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSK-QGRKVLMLE 63
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 33.4 bits (77), Expect = 0.070
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+D II+G G+ SIL R A I +VE G
Sbjct: 1 HYDLIIIGTGSGNSILDERFA---DKRIAIVEKG 31
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form.
Sarcosine oxidase catalyzes the oxidative demethylation
of sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate.
The enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism,
Amino acids and amines].
Length = 380
Score = 32.9 bits (75), Expect = 0.094
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSS 95
FD I+VGAG G A LA+ LL+E P +RG +G S
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQ-------FDLPHSRGSSHGQS 45
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 32.8 bits (75), Expect = 0.11
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 43 FDFIIVGAGTAGSILASRLA---EVRSWNILLVEAGGDPSNISYFPENRGQLYGS 94
FD +IVG G G LA+ L + +LL++A +P S E Y +
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSN 55
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 32.6 bits (75), Expect = 0.11
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+EFD I++G G G+ +A A R + LVE G
Sbjct: 10 MEEFDVIVIGGGITGAGIARDAA-GRGLKVALVEKG 44
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 31.0 bits (71), Expect = 0.13
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI 81
II+G G G LA L E ++++++ DP +
Sbjct: 1 IIIIGYGRVGRSLAEELRE-GGPDVVVIDK--DPERV 34
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 32.4 bits (74), Expect = 0.16
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 26 TTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+ V P++W EFD I++GAG AG + A+ A + +LLVE
Sbjct: 1 MSPVVSE-LSPERWDAEFDVIVIGAGAAG-MSAALFAAIAGLKVLLVER 47
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 32.0 bits (73), Expect = 0.19
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRG 89
D ++VG G AG +A +++E ++ + DPS +S +P N G
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSE-AGLSVCCI----DPSPLSIWPNNYG 70
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 31.8 bits (73), Expect = 0.20
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
+FD ++VG G G+ LA LA+ + L+ P
Sbjct: 3 HMKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPP 40
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 31.8 bits (72), Expect = 0.20
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 44 DFIIVGAGTAGSILASRLAEVR-SWNILLVEAG 75
D IIVG G AG ++A RL R + I ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 31.9 bits (73), Expect = 0.21
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 44 DFIIVGAGTAGSILASRLAEV--RSWNILLVEA 74
+IVG GTAG + A+ LA ++ LVE+
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVES 33
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 31.6 bits (72), Expect = 0.24
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 26 TTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSW---NILLVEA 74
T + P +FD IVGAG G LA LA + +I L++A
Sbjct: 3 TAASMAAP--------DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDA 46
>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1)
of the ubiquitin-like proteins. This family includes
classical ubiquitin-activating enzymes E1,
ubiquitin-like (ubl) activating enzymes and other
mechanistic homologes, like MoeB, Thif1 and others. The
common reaction mechanism catalyzed by MoeB, ThiF and
the E1 enzymes begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD, ThiS and ubiquitin,
respectively, on the alpha-phosphate of an ATP molecule
bound at the active site of the activating enzymes,
leading to the formation of a high-energy acyladenylate
intermediate and subsequently to the formation of a
thiocarboxylate at the C termini of MoaD and ThiS.
Length = 143
Score = 30.7 bits (70), Expect = 0.26
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD---PSNISYFPENRGQLYGSSMDW 98
++VG G GS +A LA I L++ D SN+ NR Q D
Sbjct: 2 VLLVGLGGLGSEIALNLARSGVGKITLID--FDTVELSNL-----NR-QFLARQADI 50
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 31.1 bits (70), Expect = 0.32
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMD 97
+FD I+VGAG AGS+ A +A ++L++E G + G+LY +++
Sbjct: 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNM---TGGRLYAHTLE 56
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 31.1 bits (71), Expect = 0.37
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAE----VRSWNILLVEAGGD 77
D +IVGAG AG A L+ V I +V+ G D
Sbjct: 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLD 57
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 30.9 bits (70), Expect = 0.41
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
D ++G G AG +A LA + L+E
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPH 31
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 30.9 bits (71), Expect = 0.43
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVR-SWNILLVE 73
+ D +++G G + L + L E+ W+I + E
Sbjct: 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFE 37
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 30.5 bits (70), Expect = 0.45
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 42 EFDFIIVGAGTAGSILASRLAE 63
E D IVGAG +G A LA+
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAK 46
>gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase.
Length = 423
Score = 30.7 bits (70), Expect = 0.48
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 88 RGQLY------GSSMDWAFVTEEQSGMF 109
R +LY GS DW+ +T +Q GMF
Sbjct: 345 RQKLYDALEARGSPGDWSHIT-KQIGMF 371
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 30.8 bits (70), Expect = 0.48
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
D +VGAG +G A LA N+L+ EA
Sbjct: 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA 44
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 30.7 bits (70), Expect = 0.53
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAE 63
+ D +I+G+G AG LA RLAE
Sbjct: 6 EHQCDVLIIGSGAAGLSLALRLAE 29
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 30.3 bits (69), Expect = 0.55
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVE 73
II+GAG G +A L+E N++L++
Sbjct: 2 KIIIIGAGRVGRSVARELSE-EGHNVVLID 30
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 30.6 bits (69), Expect = 0.58
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS 79
D I+VGAG AG + A+ LA+ +L+++ G+ +
Sbjct: 5 TADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN 41
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 29.7 bits (68), Expect = 0.85
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 46 IIVGAGTAGSILASRLAE 63
IIVGAG G LA L+
Sbjct: 4 IIVGAGQVGYTLAENLSG 21
>gnl|CDD|168201 PRK05714, PRK05714,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 405
Score = 29.4 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
D +IVGAG GS LA L + +LL++ G
Sbjct: 4 DLLIVGAGMVGSALALAL-QGSGLEVLLLDGG 34
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
Q D IVG G G+ LA LA+ +++ ++E
Sbjct: 3 NQPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLE 35
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 29.2 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
E D IIVGAG +G A LA+ + + E
Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFER 61
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 29.5 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GG 76
+D I++G G G + A R A+ + LVE GG
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQ-LGLKVALVEKEYLGG 37
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 29.5 bits (66), Expect = 1.2
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 44 DFIIVGAGTAGSILASRLAE 63
D IIVGAG GS LA LA+
Sbjct: 45 DVIIVGAGVGGSALAYALAK 64
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 29.3 bits (66), Expect = 1.3
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNI--LLVE 73
EFD +++G G AG L + + E + L+
Sbjct: 3 TIHEFDVVVIGGGGAG--LRAAI-EAAEAGLKVALLS 36
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 28.9 bits (65), Expect = 1.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 42 EFDFIIVGAGTAGSILASRLA 62
+D I+G G AGS LA LA
Sbjct: 1 HYDVAIIGLGPAGSALARLLA 21
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 29.0 bits (65), Expect = 1.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
W + +D ++VG+G G + A+ A L+VE
Sbjct: 2 TWDETYDVVVVGSG-GGGMCAALAAADSGLEPLIVE 36
>gnl|CDD|236088 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 28.2 bits (64), Expect = 1.9
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 47 IVGAGTAGSILASRLAEVRS 66
IVG A IL LAE+RS
Sbjct: 52 IVGCC-ALHILWEDLAEIRS 70
>gnl|CDD|227156 COG4819, EutA, Ethanolamine utilization protein, possible
chaperonin protecting lyase from inhibition [Amino acid
transport and metabolism].
Length = 473
Score = 28.7 bits (64), Expect = 1.9
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 44 DFIIVGAGT-AGSILASR------LAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSS 95
DF++ AG SI+A + L+E R +L ++ GG +N S F + G++ ++
Sbjct: 115 DFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLF--DAGKVSDTA 171
>gnl|CDD|183983 PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.
Length = 497
Score = 28.9 bits (65), Expect = 2.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVR-SWNILLVE 73
+ D ++VGAG + L E+ WNI +VE
Sbjct: 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVE 38
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 28.4 bits (64), Expect = 2.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
++VGAG AG A L ++ +++V+ G P
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQP 33
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 28.9 bits (65), Expect = 2.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 35 DPDQWPQEFDFIIVGAGTAG 54
P +FD ++VG+G AG
Sbjct: 2 SSTILPSQFDVLVVGSGAAG 21
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 28.5 bits (64), Expect = 2.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 1 MALSLSLVASLIYILSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASR 60
M L LSL L L + + SV IIVGAG +G A
Sbjct: 1 MLLLLSLSVLLAVHLFAVAAMDAKPSPSV----------------IIVGAGMSGISAAKT 44
Query: 61 LAEVRSWNILLVEA 74
L+E +IL++EA
Sbjct: 45 LSEAGIEDILILEA 58
>gnl|CDD|178295 PLN02692, PLN02692, alpha-galactosidase.
Length = 412
Score = 28.5 bits (63), Expect = 2.5
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 107 GMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDN 156
G+ L + + C K + GS L + D++ + WG D K+DN
Sbjct: 134 GLKLGIYSDAGYFTCSKTMPGS-----LGHEEQDAKTFASWGIDYLKYDN 178
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 28.6 bits (64), Expect = 2.5
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 1 MALSLSLVASLIYILSYGSEDTTTNTTSVPHTPQ--------------DPDQWPQEFDFI 46
L + L+ +LI + GS T+ + +S + DP + ++D +
Sbjct: 7 TTLGMLLLLALILV-GCGSNTTSKSDSSSSKESEKTEVTSGASKTSYTDPSELKDKYDIV 65
Query: 47 IVGAGTAGSILASRLAEVRSWNILLVE----AGGDPSNIS 82
IVGAG AG + A+ A+ N +++E AGG+ S
Sbjct: 66 IVGAGGAG-MSAAIEAKDAGMNPVILEKMPVAGGNTMKAS 104
>gnl|CDD|235765 PRK06274, PRK06274, indolepyruvate oxidoreductase subunit B;
Reviewed.
Length = 197
Score = 28.1 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 42 EFDFIIVGAGTAGSILASRL 61
F+ II G G G +LASR+
Sbjct: 2 NFNLIIAGVGGQGVLLASRI 21
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 28.4 bits (64), Expect = 2.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
++FD +++GAG G + A R A+ + +EA +P
Sbjct: 3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEAWKNP 39
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLV 72
+ D ++G G AG A LA ++ LV
Sbjct: 5 KEHTDIAVIGGGPAGLAAAIALAR-AGASVALV 36
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 28.4 bits (64), Expect = 3.1
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 21/71 (29%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTE 103
D +I+G+G AG A LA S+ + ++ +G L SS WA
Sbjct: 9 DVLIIGSGLAGLTAALSLAP--SFRVTVL--------------TKGPLGESSSYWA---- 48
Query: 104 EQSGMFLSLSN 114
Q G+ +LS
Sbjct: 49 -QGGIAAALSE 58
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 28.2 bits (64), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAE 63
E+D I++GAG G + A R A+
Sbjct: 2 AFEYDVIVIGAGPGGYVAAIRAAQ 25
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 28.1 bits (62), Expect = 3.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA-----GGDPSNISYFP 85
++ +I+G G AG LA LA+ W + L+E GG NI P
Sbjct: 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNAMYGGTCINIGCIP 50
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 27.9 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 29 VPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
PH QD D P ++VGAG G LA LA+ + ++L++
Sbjct: 11 RPHADQDAD-DPARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDD 54
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 28.0 bits (63), Expect = 3.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 43 FDFIIVGAGTAGSILASRLA 62
D ++VGAG AG A LA
Sbjct: 4 SDIVVVGAGPAGLSFARSLA 23
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 28.1 bits (64), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 40 PQEFDFIIVGAGTAG 54
P+E+D I+VG G AG
Sbjct: 2 PEEYDVIVVGGGHAG 16
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 27.9 bits (63), Expect = 4.0
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 9/37 (24%)
Query: 44 DFIIVGAGTAG---SILASRL-AEVRSWNILLVEAGG 76
D ++VG G AG +I A+RL A+V LLVE G
Sbjct: 1 DVVVVGGGPAGVAAAIAAARLGAKV-----LLVERRG 32
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of animals, yeast, and a number of animal-resident
bacteria [Energy metabolism, Electron transport].
Length = 450
Score = 27.9 bits (62), Expect = 4.0
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGDPSNISYFPENRGQLYGSSM 96
+ +D++++G G+ G A R AE + LLVEA GG N+ P+ + Y S +
Sbjct: 1 KHYDYLVIGGGSGGIASARRAAEHGA-KALLVEAKKLGGTCVNVGCVPK-KVMWYASDL 57
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 27.9 bits (63), Expect = 4.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 27 TSVPHTPQDPD--QWPQEFDFIIVGAGTAG 54
T +P D W E D ++VG G AG
Sbjct: 3 TDIPRPVSAEDVTSWDDEADVVVVGFGAAG 32
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 27.6 bits (62), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
FD II+G G AG + A A+ +LL++ G
Sbjct: 4 FDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKG 35
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 27.8 bits (62), Expect = 4.6
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY--GSSMDWAF 100
+D I++G+G G + A++LA V+ +L++E P + + E G + G+SM + F
Sbjct: 1 YDAIVIGSGIGGLVTATQLA-VKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGF 59
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 27.7 bits (62), Expect = 4.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 43 FDFIIVGAGTAGSILASRLAE 63
FD II+G G AG A RLAE
Sbjct: 1 FDVIIIGGGLAGLSCALRLAE 21
>gnl|CDD|166449 PLN02808, PLN02808, alpha-galactosidase.
Length = 386
Score = 27.6 bits (61), Expect = 5.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 107 GMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDN 156
G+ L + + T+ C K + GS L + D++ + WG D K+DN
Sbjct: 110 GLKLGIYSDAGTLTCSKTMPGS-----LGHEEQDAKTFASWGIDYLKYDN 154
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 27.6 bits (62), Expect = 5.1
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 47 IVGAGTAGSILASRLA-EVRSWNILLVEAGGDPSNISYFP 85
I+G G G A RLA ++ I LV D + F
Sbjct: 8 ILGGGFGGLSAAKRLARKLPDVEITLV----DRRDYHLFT 43
>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase;
Validated.
Length = 381
Score = 27.3 bits (61), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 47 IVGAGTAGSILASRLAEVRSWNILL 71
+VGAG G L R+ W +L+
Sbjct: 121 VVGAGHVGGRLV-RVLRGLGWKVLV 144
>gnl|CDD|191028 pfam04563, RNA_pol_Rpb2_1, RNA polymerase beta subunit. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This domain
forms one of the two distinctive lobes of the Rpb2
structure. This domain is also known as the protrusion
domain. The other lobe (pfam04561) is nested within this
domain.
Length = 394
Score = 27.3 bits (61), Expect = 5.8
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 3/58 (5%)
Query: 63 EVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIP 120
RS NI V Y S + ++ +++ I
Sbjct: 147 IQRSPNIYYVFKKDKNGIRIYSASIISNRGRSL---RLEITSKGKIYARINSGAKLIM 201
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed.
Length = 307
Score = 27.0 bits (61), Expect = 6.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 47 IVGAGTAGSILASRLAEVRSWNILLV 72
I+GAG G+ LA LA +++L
Sbjct: 7 IIGAGNVGATLAHLLALKELGDVVLF 32
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 27.4 bits (61), Expect = 6.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+D II+G G+ SI R A+ R I +VE G
Sbjct: 3 YDLIIIGTGSGNSIPDPRFADKR---IAIVEKG 32
>gnl|CDD|235572 PRK05708, PRK05708, 2-dehydropantoate 2-reductase; Provisional.
Length = 305
Score = 27.0 bits (60), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 47 IVGAGTAGSILASRLA 62
I+GAG+ GS+ A RLA
Sbjct: 7 ILGAGSLGSLWACRLA 22
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 27.3 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVE 73
E D +++G GTAG + A + E + +LL+E
Sbjct: 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLE 41
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 27.1 bits (61), Expect = 6.6
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 22/72 (30%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG--------------------DPSN-I 81
+D I++G G AG + A A+ R +LL++ G +P +
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK-RGRRVLLIDKGKKLGRKILISGGGRCNVTNSVEPDEFL 59
Query: 82 SYFPENRGQLYG 93
S +P N L
Sbjct: 60 SRYPGNPHFLKS 71
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 27.2 bits (61), Expect = 6.7
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
+ D I+VGAG AG + A+ LA+ +LL++
Sbjct: 4 DADVIVVGAGLAGLVAAAELAD-AGKRVLLLD 34
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 27.0 bits (60), Expect = 7.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 26 TTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEV 64
+ D+ + FDF+++G+G AG A +AE
Sbjct: 13 AERASSASRLDDESTKYFDFLVIGSGIAGLRYALEVAEY 51
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 26.9 bits (60), Expect = 7.2
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 42 EFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDPS 79
E D +IVG G AG +LA LA VR +LVE S
Sbjct: 1 ETDVLIVGGGPAGLMLALLLARAGVRV---VLVERHATTS 37
>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A
(RAB escort protein) [Posttranslational modification,
protein turnover, chaperones].
Length = 434
Score = 27.1 bits (60), Expect = 7.9
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GGDPSNISYF--------PEN 87
+D II+G G SIL++ L+ N+L ++ G ++++ E
Sbjct: 4 ETLYDVIILGTGLRESILSAALS-WDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEK 62
Query: 88 RGQLYGSSMDW 98
R G D
Sbjct: 63 RPSKGGGDRDL 73
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 27.0 bits (60), Expect = 7.9
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 32 TPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
E D +++G+G AG + A+ A +++VE
Sbjct: 2 PSAAAYPPDLECDVLVIGSGAAG-LSAAVTAAWHGLKVIVVE 42
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 27.0 bits (60), Expect = 8.0
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 24 TNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAE 63
T T H +D ++VGAG AG A L E
Sbjct: 11 TRTFFSGHLSSAYPVIDHTYDAVVVGAGGAGLRAALGLVE 50
>gnl|CDD|224896 COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis
[Coenzyme metabolism].
Length = 218
Score = 26.5 bits (59), Expect = 8.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 34 QDPDQWPQEFDFIIVGAGTA 53
D + E D I+VG+GT
Sbjct: 35 ADVHELRAESDAILVGSGTV 54
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 26.9 bits (60), Expect = 8.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 40 PQEFDFIIVGAGTAGSILA 58
QE+D ++VG+G AG + A
Sbjct: 5 VQEYDVVVVGSGAAGMVAA 23
>gnl|CDD|220549 pfam10069, DICT, Sensory domain found in DIguanylate Cyclases &
Two-component systems. DICT is a sensory domain found
associated with GGDEF, EAL, HD-GYP STAS, and two
component systems. It assumes an alpha+beta fold with a
4-stranded beta-sheet and might have a role in light
response.
Length = 125
Score = 26.1 bits (58), Expect = 8.4
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 3 LSLSLVASLIYILSYGSEDTTTNTTSVPHTPQDP---DQWPQEFDFIIVGAGTAGSILAS 59
L+ ++ +Y+ Y DT S D +E+ +++G A ++LA
Sbjct: 66 RQLADLSVDVYV--YAVPDTDFPPPSPNDETIHLEPSDPLRREWFLVVLGPDYAAALLAR 123
Query: 60 RL 61
L
Sbjct: 124 EL 125
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 26.7 bits (59), Expect = 8.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 46 IIVGAGTAGSILASRL----AEVRSWNILLVEAG 75
+I+GAG AG A++L A + + +VE G
Sbjct: 9 VIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG 42
>gnl|CDD|202496 pfam02981, FokI_N, Restriction endonuclease FokI, recognition
domain.
Length = 145
Score = 26.0 bits (57), Expect = 8.7
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 147 WGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPS 188
W D F ++K S F DS + E T+ P +V
Sbjct: 14 WVQDPSDFKELVKVV--SIFDPDSKIHKELIDTRIPELVTEL 53
>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
Length = 427
Score = 26.8 bits (59), Expect = 9.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 133 SLYYTRGDSRDYDEWGYDAFKFDN 156
SL++ D+ + WG D K+DN
Sbjct: 161 SLFHEVDDADIFASWGVDYLKYDN 184
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 26.6 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
D IIVGAG AG A L + + + ++EA
Sbjct: 9 DVIIVGAGLAGLSAAYELKKA-GYQVQILEA 38
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 26.6 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 43 FDFIIVGAGTAGSILASRLA 62
++ II+G G G +LAS LA
Sbjct: 3 YEVIIIGGGPVGLMLASELA 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.402
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,883,717
Number of extensions: 886657
Number of successful extensions: 1102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 120
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)