RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6708
(197 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 162 bits (413), Expect = 1e-47
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 27/192 (14%)
Query: 15 LSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
L D ++ S P + +D+II G G G +A++L E +L++E
Sbjct: 2 LPAQQIDVQSSLLSDPSKVAG-----KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEK 56
Query: 75 GGDPSNISYF---PENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSI 131
G SN P GQ++G+++D ++T ++N+ I GKGLGGS+ I
Sbjct: 57 GFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLI 110
Query: 132 HSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSE---------FMTDSSKYNEFHG 178
+ +TR D D W G + + +DN+ +Y KK+E S HG
Sbjct: 111 NGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHG 170
Query: 179 TQGPFVVKPSPR 190
T G
Sbjct: 171 TNGTVQSGARDN 182
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 159 bits (404), Expect = 3e-46
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---PENRGQLYGSSMD 97
+ D+II G G G A+RL E + ++L++E+G S+ G ++GSS+D
Sbjct: 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 77
Query: 98 WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFK 153
A+ T E + +NQ I G GLGGS+ ++ +TR D W G + +
Sbjct: 78 HAYETVEL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 154 FDNVLKYFKKSEFMTDSSKY---------NEFHGTQGP 182
+DNV Y ++E + HG G
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGT 170
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 152 bits (387), Expect = 6e-44
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---PENRGQLYGSSMD 97
FDF+IVG GTAG+ +A RLAE + +L+VEAG P + L S D
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 98 WAFVTEEQSGMFLSLSNQRTTIPC--GKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAF 152
WA+ T +R P GK LGGSSS++ + G +D+W G +
Sbjct: 65 WAYKTTMVRRD----DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120
Query: 153 KFDNVLKYFKKSE-FMTDSSKY---NEFHGTQGPFVV 185
+D ++ Y +KS + D Y E G GP +
Sbjct: 121 TWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPI 157
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 151 bits (385), Expect = 1e-43
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 19/159 (11%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF--PENRGQLYGSS-MDW 98
+FD+++VGAG AG+++A+RL E ++L++EAG N+ P L +S DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
+ T Q+G + + P G+ LGGSSS+H + RG + D+D + G + + +
Sbjct: 62 NYTTTAQAGY----NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 155 DNVLKYFKKSE--------FMTDSSKYNEFHGTQGPFVV 185
DN+ ++ +K+E T HGT G +
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSI 156
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 148 bits (375), Expect = 2e-42
Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 21/146 (14%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
+D++IVG GT+G LA+ L+E + +L++E G P+ G +Y +
Sbjct: 25 GSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDG 82
Query: 101 VTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDE----WGYDAFKFDN 156
T + + S G+ LGG+S I++ Y R ++ Y W D
Sbjct: 83 KTPVERFV----SEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDM-----DL 133
Query: 157 VLKYFKKSEFMTDSSKYNEFHGTQGP 182
V + ++ E +
Sbjct: 134 VNQTYEWVE------DTIVYKPNSQS 153
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 147 bits (373), Expect = 5e-42
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 19/176 (10%)
Query: 31 HTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI------SYF 84
H + +EFD+I+VG G+AG+ +A+RL+E + ++ LVEAG D + +
Sbjct: 2 HIDNIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRW 61
Query: 85 PENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDY 144
E L S DW + E Q N K +GG SS +S D
Sbjct: 62 ME----LLESGYDWDYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDL 112
Query: 145 DEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTFD 196
DEW G + + +K+ E D+ HG GP + P D T
Sbjct: 113 DEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 144 bits (365), Expect = 5e-41
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY-FPENR 88
+ + D +IVG G+AGS+LA+RL+E +LL+EAG +P++ P
Sbjct: 5 VRMTRAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAW 64
Query: 89 GQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW- 147
L G S DW + TE Q+G + + G+ +GGSS +H++ Y RG D+ W
Sbjct: 65 PALQGRSYDWDYRTEAQAGT----AGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWV 120
Query: 148 ---GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGP-FVVKPSPRVDKTFD 196
G + +D +L F+ E + HG GP + P+ V
Sbjct: 121 DASGDRRWGWDELLPVFQAIE--DHPLGGDGIHGKGGPLPIHLPADEVSPLAR 171
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 130 bits (330), Expect = 5e-36
Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 20/170 (11%)
Query: 36 PDQWPQEFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGD--------PSNISYFP 85
P +D+IIVGAG G I A RL+E + +LL+E GG
Sbjct: 1 PTVSATPYDYIIVGAGPGGIIAADRLSEAGKK---VLLLERGGPSTKQTGGTYVAPWATS 57
Query: 86 ENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYD 145
+ + + T+ + T+ G +GG +S++ Y + D+
Sbjct: 58 SGLTKFDIPGLFESLFTDSNPFW----WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS 113
Query: 146 EWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTF 195
+ N Y K + T G ++ S V
Sbjct: 114 SSVGWPSSWTNHAPYTSKLS---SRLPSTDHPSTDGQRYLEQSFNVVSQL 160
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 67.8 bits (165), Expect = 9e-14
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 21/154 (13%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD----------------PSNISYFP 85
+++G G ++ A RL E L++E G P S +
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63
Query: 86 ENRGQLYGSSMDWAFV----TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDS 141
+NR + S W V + +G+ ++ + ++ G+G+GG S ++
Sbjct: 64 KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123
Query: 142 RDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNE 175
++E + +YF ++ M + +
Sbjct: 124 SYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDT 157
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 62.9 bits (152), Expect = 5e-12
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 20/153 (13%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG----DPSNISYFPENRGQLYGSS-- 95
+++G+G G++ A RL + +VE G S+ F S
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 96 -------------MDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSR 142
+ G+ S + G+G+GG S ++
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129
Query: 143 DYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNE 175
++E + KYF ++ + ++
Sbjct: 130 YFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQ 162
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 54.1 bits (129), Expect = 5e-09
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 6/126 (4%)
Query: 29 VPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENR 88
+P + ++D +IVG+G G A L + + + + G S + +
Sbjct: 33 LPGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKK 91
Query: 89 GQLYGSSMDWAFVTEEQSGMF-----LSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRD 143
+ FV Q + ++ T P + + R+
Sbjct: 92 NTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRN 151
Query: 144 YDEWGY 149
Sbjct: 152 LSGQAV 157
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 44.8 bits (106), Expect = 7e-06
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
++ D +++GAG AG++ AS + + + + +VE P
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQKFP 40
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 44.5 bits (105), Expect = 8e-06
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
P+ FD I++G G GS LAS +A R +LL+E P
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAFP 42
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 43.3 bits (102), Expect = 2e-05
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
++D +I+G G AGS A +L+ R ILLV++
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPWN 41
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 42.7 bits (101), Expect = 3e-05
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
+ +D ++VG G GS A A+ L++E +
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEI 39
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 42.1 bits (98), Expect = 4e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
FD +VG+G G +A R+A +L++E
Sbjct: 6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 42.0 bits (97), Expect = 5e-05
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDPSNISYFPENRGQLYGSSMD 97
+ FD +++GAG G+ A L ++ ++LLVE GG P+ G +
Sbjct: 34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIP 92
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 41.7 bits (97), Expect = 6e-05
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 22 TTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
TN + + Q + FD++IVGAG AGS+LA RLA +L+V+
Sbjct: 9 AVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 41.1 bits (96), Expect = 1e-04
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 25 NTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
+ S P+ I+G G AGS+ L + ++ + E P
Sbjct: 8 HHHSSGLVPRGSH--MTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERSAFP 58
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 40.2 bits (94), Expect = 2e-04
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 19/74 (25%)
Query: 26 TTSVPHTPQDPDQWPQ-----EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN 80
+S H P+ FD+++VGAG G A L ++L+V+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVD------- 54
Query: 81 ISYFPENRGQLYGS 94
G GS
Sbjct: 55 -------AGHAPGS 61
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 39.2 bits (92), Expect = 4e-04
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS 82
D +I G G G++LA L + +++VE I+
Sbjct: 4 DNHIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRERAIN 45
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 39.0 bits (90), Expect = 5e-04
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP 78
D IIVGAG++G A +A+ R + ++E+ P
Sbjct: 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 38.1 bits (88), Expect = 0.001
Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+ +IVGAG +G+++ +LAE + + +++
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQ 34
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 38.3 bits (90), Expect = 0.001
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 31 HTPQD-PDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77
T D Q P+E D ++VGAG +G RL E ++ ++E GD
Sbjct: 4 QTTVDSRRQPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 38.1 bits (88), Expect = 0.001
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+D+IIVG+G G++ A+ L + + +L++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 37.9 bits (87), Expect = 0.001
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
D +++GAG G A RL ++ + ++V++ GG
Sbjct: 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 37.8 bits (87), Expect = 0.001
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
E D ++VGAG+AG A +++ + + ++E P
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 75
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 38.0 bits (88), Expect = 0.001
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS 82
P P + P + D +IVG G AG LA++LA +VE P +
Sbjct: 20 PLAPAHTEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELG 72
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 21 DTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAG 54
T P + +W E D ++ G G AG
Sbjct: 20 HMVDATPIRPRSATTVTEWDYEADVVVAGYGIAG 53
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 36.7 bits (84), Expect = 0.003
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP 78
E D +IVGAG+ G A L+ +R I +VEAG P
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 36.7 bits (85), Expect = 0.003
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
+ +D ++VG G G A ++AE R +L++E
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHT 37
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 35.8 bits (83), Expect = 0.005
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
++D II+G+G+ G+ N+L+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAH 34
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 36.1 bits (84), Expect = 0.005
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 19/94 (20%)
Query: 32 TPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSW-NILLVE------------AGGDP 78
+P+ + +D IIVG G G A LA+ N+ ++E
Sbjct: 12 LWANPE-PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIR 70
Query: 79 SNISYFPENRGQLYGSSMD-WAFVTEE--QSGMF 109
SN Y + +Y S+ W + E+ +F
Sbjct: 71 SN--YLWDESAGIYEKSLKLWEQLPEDLEYDFLF 102
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 35.6 bits (83), Expect = 0.007
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77
T D +D ++VGAG AG R + + EA
Sbjct: 9 VVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG 55
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 35.7 bits (81), Expect = 0.007
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 34 QDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
++ + +D II+G G IL+ L+ IL+++
Sbjct: 12 ENLYFQGEHYDVIILGTGLKECILSGLLS-HYGKKILVLDR 51
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 35.6 bits (81), Expect = 0.007
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 35 DPDQWPQEFDFIIVGAGTAGSILASRLA 62
D + ++D I++G G IL+ L+
Sbjct: 4 DQETIDTDYDVIVLGTGITECILSGLLS 31
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 35.4 bits (80), Expect = 0.007
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
I+G G AG A L + L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTA-AGHQVHLFDKSRGS 37
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 35.5 bits (82), Expect = 0.008
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 46 IIVGAGTAGSILASRLAEVR--SWNILLVEAGGDPSNISYF 84
+I+GAGT G A + E + L+ ++ F
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLI----SANDYFQF 44
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 35.2 bits (80), Expect = 0.011
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVE---AGGDPSNISYFPENRGQLYGSSM 96
+E+D I++G G IL+ ++ + + GG+ S+I+ E +
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63
Query: 97 DWAFVTEEQSGMF 109
+ +
Sbjct: 64 PPETMGRGRDWNV 76
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 34.9 bits (81), Expect = 0.011
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
P E D++++GAG AG+ L+ ++++E P
Sbjct: 7 PIEADYLVIGAGIAGASTGYWLSAHGR--VVVLEREAQP 43
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 35.2 bits (80), Expect = 0.011
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+I+GAG G A RL E+ N L E
Sbjct: 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC 41
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 34.7 bits (80), Expect = 0.012
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 46 IIVGAGTAGSILASRLAE-VRSWNILLVEAGGDPSNISYF 84
+++G G G A L + I L+ F
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLI----SDRPYFGF 41
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 35.1 bits (81), Expect = 0.012
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 32 TPQDPDQWPQEFDFIIVGAGTAGSILASRLAE 63
D ++VG+G AG A +
Sbjct: 116 QAALASAPHDTVDVVVVGSGGAGFSAAISATD 147
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 34.9 bits (81), Expect = 0.013
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77
D +++GAG G +L + +
Sbjct: 6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.5 bits (80), Expect = 0.018
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWA 99
D +I+G+G AG LA RLA+ ++++ ++G + S +A
Sbjct: 7 HSCDVLIIGSGAAGLSLALRLAD--QHQVIVL--------------SKGPVTEGSTFYA 49
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.3 bits (79), Expect = 0.018
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 32 TPQDPDQWPQEFDFIIVGAGTAG 54
+ D +I+G+G AG
Sbjct: 116 DKAIAAGVKETTDVVIIGSGGAG 138
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 34.3 bits (79), Expect = 0.021
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 32 TPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVE----AGGDPSNIS----Y 83
+ ++VGAG+AG + + N++LV+ +GG+ S IS
Sbjct: 111 QKAIAAGPSETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFSGGN-SMISAGGMN 168
Query: 84 FPENRGQ 90
+ Q
Sbjct: 169 AVGTKQQ 175
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 34.1 bits (78), Expect = 0.023
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS 82
+ +IVGAGT G+ A LA N+ +++ PS IS
Sbjct: 4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS 46
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 34.0 bits (78), Expect = 0.024
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
+D I+VG G +G A L +LL+E GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGERLGG 38
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 33.7 bits (78), Expect = 0.029
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77
D +++GAG G A + + +L +EAG D
Sbjct: 7 SPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 33.7 bits (78), Expect = 0.031
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+ ++ +++G G GS +A LA+ + N L E+G
Sbjct: 15 KRHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESG 49
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 33.5 bits (77), Expect = 0.037
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 19 SEDTTTNTTSVPHTPQDPD-QWPQEFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAG 75
+ S P+ P E D +I+G G G LA LA V L+VE
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMNAPIETDVLILGGGPVGMALALDLAHRQVGH---LVVEQT 58
Query: 76 GDPSNIS 82
Sbjct: 59 DGTITHP 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.043
Identities = 30/215 (13%), Positives = 57/215 (26%), Gaps = 90/215 (41%)
Query: 3 LSLSLVASLIYILSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLA 62
LS++A I + T D W + +L
Sbjct: 328 RRLSIIAESI------RDGLATW-----------DNWKH--------------VNCDKLT 356
Query: 63 EVR--SWNILLVEAGGDPSNIS--Y-----FPEN----RGQLYGSSMDWAFVTEEQSGMF 109
+ S N+L +P+ + FP + L S+ W V + +
Sbjct: 357 TIIESSLNVL------EPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVV 407
Query: 110 LSLSNQRTTIPCGKGLGGSSSIHSLY--------------------YTRGDSRDYDEWGY 149
++ ++ + + + + SI S+Y Y + +D
Sbjct: 408 VNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI--PKTFDSDDL 464
Query: 150 DAFKFDNVLKYF--------KKSEFMTDSSKYNEF 176
D YF K E + + F
Sbjct: 465 IPPYLDQ---YFYSHIGHHLKNIE-HPE--RMTLF 493
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 33.2 bits (76), Expect = 0.043
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 46 IIVGAGTAGSILASRLAE-VRSWNILLVEAGGDPSNISYF 84
++VG GT G+ A + S + L+E P+ Y
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIE----PNTDYYT 41
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 33.1 bits (74), Expect = 0.044
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 46 IIVGAGTAGSILASRLAEV--RSWNILLVEAGGDP 78
+IVG GTAG + AS L + NI L+E+ P
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIESAAIP 43
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 33.1 bits (76), Expect = 0.048
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 46 IIVGAGTAGSILASRLAEV--RSWNILLVEAGGDPSNISYF 84
+++G A L + ++ ++ + S SYF
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVI----NKSRFSYF 41
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 33.2 bits (76), Expect = 0.050
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 33 PQDPDQWPQEFDFIIVGAGTAGSILASRL 61
D+ P F+++G GTA A +
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSI 30
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 32.8 bits (73), Expect = 0.053
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDPSNISY---FPENRGQLYGSSMDW 98
+IVGAG GS+ A+ L + + + D P N +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQY 62
Query: 99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGS 128
T + ++ + L
Sbjct: 63 ITCTPHYAKKHQRFYDELLAYGVLRPLSSP 92
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 32.8 bits (75), Expect = 0.061
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
+ D IVGAG +G A+ L + ++ ++EA GG
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRVGG 42
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 32.5 bits (75), Expect = 0.065
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
+ D I++GAG G +A LA +L+ EA
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEGI 39
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 32.3 bits (74), Expect = 0.097
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDPSNIS 82
E D ++VGAG G A LA VR L+VE S
Sbjct: 3 DHEVDVLVVGAGLGGLSTAMFLARQGVRV---LVVERRPGLSPYP 44
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 32.1 bits (74), Expect = 0.11
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 23/97 (23%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVE------------AGGDPSNISYFPEN 87
P++ + +++G G G +A LA+ R + ++E G + E
Sbjct: 3 PEKSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKRFIGSGSTFRCGTGIRQQ--FNDEA 59
Query: 88 RGQLYGSSMD-WAFVTEE------QSG-MFLSLSNQR 116
++ S++ W +EE Q+G +FL ++
Sbjct: 60 NVRVMKRSVELWKKYSEEYGFSFKQTGYLFLLYDDEE 96
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 31.8 bits (72), Expect = 0.13
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 22 TTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+ S P +D D+ +D I++G G G L + LL+EA
Sbjct: 20 PSLGVISPPTNIEDTDK-DGPWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEA 70
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 31.9 bits (73), Expect = 0.13
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 33 PQDPDQWPQEFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDPSNIS 82
+ I+VGAG AG +LA L V +++E + + S
Sbjct: 2 HHHHHHHRSDAAVIVVGAGPAGMMLAGELRLAGVEV---VVLERLVERTGES 50
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 31.9 bits (72), Expect = 0.13
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
H P + +VG G +G +A L R + +L+E+ GG
Sbjct: 6 HHHHHMPR--TTGMNVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARLGG 53
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 31.2 bits (70), Expect = 0.14
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 9/42 (21%)
Query: 36 PDQWPQEFDFI-----IVGAGTAGSILASRLA----EVRSWN 68
+ F ++G GT G +A LA EV
Sbjct: 8 HHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGT 49
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 31.5 bits (72), Expect = 0.14
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
FD I+VGAG+ G +LA+ + LLV+A
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD 36
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 31.7 bits (72), Expect = 0.15
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 42 EFDFIIVGAGTAG---SILASRLAEVRSWNILLVE 73
E D +I+G G +G + A+ A++ + LVE
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 31.5 bits (72), Expect = 0.15
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 32 TPQDPDQWPQEFDFIIVGAGTAGSILAS--RLAEVRSWNILLVEAGGDPSNIS 82
+ I+VGAG AG +LA RL V +++E + S
Sbjct: 2 AHHHHHHHRSDASVIVVGAGPAGLMLAGELRLGGVDV---MVLEQLPQRTGES 51
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 31.7 bits (71), Expect = 0.15
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
P + II+GAG AG AS L + + L++EA GG
Sbjct: 6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 31.7 bits (70), Expect = 0.17
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 46 IIVGAGTAGSILASRLAEV--RSWNILLVEAGGDP 78
+IVG GTAG + AS L + + +I L++A P
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAPDIP 63
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 31.6 bits (70), Expect = 0.18
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 46 IIVGAGTAGSILASRLAEV--RSWNILLVEAGGDP 78
+IVG GTAG + AS L ++ LVE+G
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVR 40
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 31.4 bits (71), Expect = 0.19
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
++ I+GAG AG L + + ++E GG
Sbjct: 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 30.8 bits (70), Expect = 0.24
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDPSNIS 82
+ D D ++VG G G +LA L V + L++E +P
Sbjct: 37 MMHNSNADDAALTTDVVVVGGGPVGLMLAGELRAGGVGA---LVLEKLVEPVGHD 88
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 30.9 bits (70), Expect = 0.26
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 42 EFDFIIVGAGTAGSILASRLAEV-----RSWNILLVEAGGDPSN 80
E D +IVGAG AG A+RL ++ + + LVE
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA 78
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 29.8 bits (68), Expect = 0.27
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNI 69
+I GAG+AG LA+ L + + ++
Sbjct: 8 LIYGAGSAGLQLANMLRQGKEFHP 31
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 30.6 bits (69), Expect = 0.29
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
+ D ++VG G +G A L + N++++EA GG
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHD-SGLNVVVLEARDRVGG 41
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 30.4 bits (68), Expect = 0.37
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 42 EFDFIIVGAGTAGSILASRLAE 63
D ++VG G A
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVR 43
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 30.5 bits (68), Expect = 0.40
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 31 HTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
D+ ++GAG +G A +L N+ + EA GG
Sbjct: 2 APSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAGG 50
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.7 bits (67), Expect = 0.41
Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI 81
+ P +I+G G G+ L L +E
Sbjct: 28 LNQRDQLIN-PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEI--REEAA 76
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 30.3 bits (67), Expect = 0.48
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 31 HTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+ P + II+G+G +G A +L ++ L+EA
Sbjct: 267 YKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEA 309
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 29.1 bits (66), Expect = 0.50
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 46 IIVGAGTAGSILASRLAE 63
+I G G GS++A+ +
Sbjct: 23 VIFGCGRLGSLIANLASS 40
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 29.0 bits (66), Expect = 0.50
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY 83
II G G G LA L+E + +I+L++ D
Sbjct: 8 IIAGIGRVGYTLAKSLSE-KGHDIVLIDI--DKDICKK 42
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 30.0 bits (67), Expect = 0.50
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 30 PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAE 63
H Q D I VG G + LA L E
Sbjct: 19 SHMTQATAT-AVVHDLIGVGFGPSNIALAIALQE 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.51
Identities = 34/179 (18%), Positives = 51/179 (28%), Gaps = 52/179 (29%)
Query: 4 SLSLVAS-LIYILSYGSEDTTTNTTSV-----------------PHT-----PQDPDQWP 40
LV L Y+ S V H Q+ D
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA-----------GGDPSNISYFPENRG 89
+ +I TA I+A R + +S + L GG + YF E R
Sbjct: 117 VKTKELIKNYITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR- 174
Query: 90 QLYGSSMDW-AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW 147
LY + + + + L RTT+ K +T+G + EW
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELI--RTTLDAEK-----------VFTQG--LNILEW 218
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 29.9 bits (66), Expect = 0.59
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 36 PDQWPQEFDFIIVGAGTAGSILASRLA 62
D P +FD I++G G SI+A+ +
Sbjct: 2 ADNLPSDFDVIVIGTGLPESIIAAACS 28
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.7 bits (68), Expect = 0.62
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
Q + II+GAG AG A++LA+ ++ + +
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAK-LGKSVTVFD 34
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.4 bits (65), Expect = 0.71
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEE 104
+++GAG AG + AS+L + R W I +VE + + + G+ + +
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDA 63
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.1 bits (66), Expect = 0.74
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVE 73
II+G T LA + R + ++++
Sbjct: 4 IIIGGETTAYYLARSMLS-RKYGVVIIN 30
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 29.6 bits (67), Expect = 0.79
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
++ D +++G G G+ +A A+VR LVE
Sbjct: 17 KQLDLLVIGGGITGAGIA-LDAQVRGIQTGLVEMN 50
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 29.4 bits (65), Expect = 0.93
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 31 HTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS----YFPE 86
+ P ++ + I +A RL +++ G S S Y
Sbjct: 231 YIPCIDEEVVELDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEI 290
Query: 87 NRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSR 142
+ L SS E+ S + S N R + CG+ + G + + S+ Y
Sbjct: 291 PKKYLDNSSDASGTSNEDSSHIVKSR-NARASYICGQDIHGDAILASVGYRWKSDD 345
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 29.1 bits (66), Expect = 0.98
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 46 IIVGAGTAGSILASRLAE 63
II+GAG G LA L
Sbjct: 7 IILGAGQVGGTLAENLVG 24
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 29.1 bits (64), Expect = 1.1
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
+ II+G+G +G A +L ++ L+EA
Sbjct: 105 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEA 138
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 28.8 bits (65), Expect = 1.1
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+E D +I+G G G+ +A A L+E
Sbjct: 31 EELDLLIIGGGITGAGVA-VQAAASGIKTGLIEMQ 64
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 28.9 bits (65), Expect = 1.1
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
D +++G G +G L + ++++A P
Sbjct: 2 DSVDVVVIGGGQSGLSAGYFLRR-SGLSYVILDAEASP 38
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 28.9 bits (63), Expect = 1.1
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 46 IIVGAGTAGSILASRLA-----------EVRSWNILLVEAGGDP 78
IIVG GTAG I A LA NI L+E+
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA 54
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 29.0 bits (66), Expect = 1.1
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
++ D +I+GAG AG + A + R +L+++
Sbjct: 26 EKQDVVIIGAGAAGMMCAIEAGK-RGRRVLVIDHA 59
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.0 bits (66), Expect = 1.1
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 45 FIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
++I+G AG A ++ + N++ +E G SY
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKG---EIYSY 75
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 28.7 bits (65), Expect = 1.2
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
+I+G G+ A+R + + I++ E G +S+
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERG---EYVSF 40
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase;
HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Length = 397
Score = 28.6 bits (63), Expect = 1.3
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 107 GMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDN 156
G+ + + T+ CG + SL Y D++ + +WG D K+DN
Sbjct: 87 GLKAGIYSSAGTLTCGGHIA------SLGYEDIDAKTWAKWGIDYLKYDN 130
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 45 FIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
++VG G+ +A+RL + I++VE G IS+
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERG---EYISF 75
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 28.8 bits (64), Expect = 1.4
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSW----NILLVEAGGDPSNIS 82
D +IVGAG AG + A L+E + +++
Sbjct: 6 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 52
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 28.7 bits (64), Expect = 1.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
+++G G AG A L + + + ++EA GG
Sbjct: 9 KGSHSVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRPGG 48
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 28.5 bits (64), Expect = 1.5
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQ 90
I+G G G +A L ++ + E D E R
Sbjct: 30 AIIGGGPVGLTMAKLLQ-QNGIDVSVYER--DND-----REARIF 66
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 28.6 bits (65), Expect = 1.6
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
+I+G G AG ASR+ ++ W++ + EA +S+
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEAT---EWVSH 42
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 28.3 bits (64), Expect = 1.6
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
+++GA G A R + ++ +++ S ISY
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQA---SRISY 42
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 28.2 bits (64), Expect = 1.7
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
I+VG AG+ + ++ E NIS+
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDADVTAYEMN---DNISF 39
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 28.3 bits (64), Expect = 1.7
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+D I++G G +G + A AE N+LL++ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKG 58
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 28.4 bits (63), Expect = 1.7
Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQ 105
I++G G G LA+ +N ++VE G + R + W +
Sbjct: 111 IVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE-------VRER--TKDTFGFW------R 154
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYD---AFKFDNVLKYFK 162
SN + G+G G+ S LY D Y + Y
Sbjct: 155 KRTLNPESN----VQFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVS 210
Query: 163 KSEFMTD 169
K T
Sbjct: 211 KPHIGTF 217
>3i83_A 2-dehydropantoate 2-reductase; structural genomics,
oxidoreductase, NADP, pantothenate BIOS PSI-2, protein
structure initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 27.9 bits (63), Expect = 1.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 47 IVGAGTAGSILASRLAE 63
++G G GS + LA+
Sbjct: 7 VIGTGAIGSFYGALLAK 23
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.1 bits (60), Expect = 1.9
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQ-LYGSSMDWAFVTEE 104
+VGAG G ++A+ L ++++ + A D + ++ + D A + +
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTV--ADHDLAALAVLNRMGVATKQVDAKDEAGLAKA 66
Query: 105 QSGMFLSLS 113
G +S
Sbjct: 67 LGGFDAVIS 75
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding
domain, PSI-2, NYSGXRC, structur genomics, protein
structure initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 28.1 bits (63), Expect = 1.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 47 IVGAGTAGSILASRLAE 63
IVGAG G L +RLA
Sbjct: 8 IVGAGAVGGYLGARLAL 24
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 28.2 bits (64), Expect = 2.0
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 45 FIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
+I+GA AG A + I L++ + + Y
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQ---ATVGY 41
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 28.3 bits (64), Expect = 2.0
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGD 77
++G+G A A + E + + L+E GG
Sbjct: 3 PPVQVAVIGSGGAAMAAALKAVEQGA-QVTLIERGTIGGT 41
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 28.2 bits (64), Expect = 2.0
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
++VGA G+ AS++ + +I++ E ++S+
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKD---RDMSF 40
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 28.0 bits (63), Expect = 2.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 47 IVGAGTAGSILASRLAE 63
I+GAG G LA
Sbjct: 24 IMGAGAVGCYYGGMLAR 40
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 27.6 bits (62), Expect = 2.1
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 41 QEFDFIIVGAGTAGS 55
+ +IVGAG +G+
Sbjct: 2 AAYQVLIVGAGFSGA 16
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 27.9 bits (63), Expect = 2.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 47 IVGAGTAGSILASRLAE 63
IVGAG G + L
Sbjct: 7 IVGAGALGLYYGALLQR 23
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 27.8 bits (63), Expect = 2.1
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISY 83
I++G+ G L + I E G IS+
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKG---DFISF 39
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 27.9 bits (62), Expect = 2.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
I+VGAG +G A RL+E ++L++EA GG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 27.9 bits (62), Expect = 2.3
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GG 76
+IVGAG AG A LA + ++EA GG
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERPGG 70
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 27.8 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 40 PQEFDFIIVGAGTAG 54
P FD II+G G AG
Sbjct: 26 PDPFDVIIIGGGHAG 40
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 27.0 bits (60), Expect = 2.6
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 45 FIIVGAGTAGSILASRLAE 63
FI+ G +L +
Sbjct: 6 FIVCGHSILAINTILQLNQ 24
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 27.8 bits (63), Expect = 2.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 40 PQEFDFIIVGAGTAG 54
+D I+VGAG AG
Sbjct: 19 SHMYDVIVVGAGHAG 33
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 27.6 bits (60), Expect = 3.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 46 IIVGAGTAGSILASRLAE 63
IVGAGTAG L L +
Sbjct: 26 GIVGAGTAGLHLGLFLRQ 43
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 27.5 bits (61), Expect = 3.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
Q I+GAG AG +A L + +++++E G
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG 37
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 26.8 bits (60), Expect = 3.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 44 DFIIVGAGTAGSILASRLAE 63
++I++G+ AG L L
Sbjct: 8 EYIVIGSEAAGVGLVRELTA 27
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 27.3 bits (61), Expect = 3.6
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQ 105
I+G G G A L++ + + I + G L M +
Sbjct: 498 AIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQI 557
Query: 106 SGMFLSLSNQRTTIPCGKGLGGSS 129
+ QR G+GLG ++
Sbjct: 558 VML------QRKASKPGQGLGKTT 575
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 27.4 bits (60), Expect = 3.7
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 46 IIVGAGTAGSILASRLAEVR-SWNILLVEA----GG 76
+++G G +G + L+ ++LVE+ GG
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG 41
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.5 bits (59), Expect = 3.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 44 DFIIVGAGTAGSILASRLAE 63
F ++G G G + L
Sbjct: 8 QFAVIGLGRFGGSIVKELHR 27
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 27.2 bits (61), Expect = 3.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 41 QEFDFIIVGAGTAGSILASRLA 62
D I+G GTAG
Sbjct: 7 INVDVAIIGTGTAGMGAYRAAK 28
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 27.1 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Query: 41 QEFDFIIVGAGTAG---SILASR 60
++FD +IVGAG AG ++ A+R
Sbjct: 15 RDFDVVIVGAGAAGFSAAVYAAR 37
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 26.9 bits (60), Expect = 4.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 47 IVGAGTAGSILASRLAE 63
I GAG GS L L +
Sbjct: 8 IAGAGAMGSRLGIMLHQ 24
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 26.9 bits (60), Expect = 4.5
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 18 GSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLA 62
G T S ++ ++D I++G G+ G + A + A
Sbjct: 83 GDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGG-LAAGKEA 126
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 26.7 bits (60), Expect = 4.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAG 75
+ D ++GAG AG L + L R+ I L +
Sbjct: 4 MKYIDCAVIGAGPAG--LNASLVLGRARKQIALFDNN 38
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 27.1 bits (61), Expect = 4.8
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
Q FD I +G G+ G + + A + L+E+
Sbjct: 3 QHFDLIAIGGGSGG-LAVAEKAAAFGKRVALIESKA 37
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 26.5 bits (58), Expect = 4.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 46 IIVGAGTAGSILASRLAE 63
I G G G L ++ +
Sbjct: 23 CIFGTGDFGKSLGLKMLQ 40
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 26.9 bits (60), Expect = 4.9
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 20 EDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLA 62
++ + P+E+D I +G G AG ++ L
Sbjct: 21 DEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLR 63
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 26.8 bits (60), Expect = 4.9
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 32/83 (38%)
Query: 47 IVGAGTAGSILASRLAE----------------------VRSWNILLVE-AGGD----PS 79
+ G G G + LA +R+ L V D P+
Sbjct: 13 VFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPT 72
Query: 80 NISYFPENRGQLYGSSMDWAFVT 102
++ P G +D+
Sbjct: 73 CVTDNPAEVGT-----VDYILFC 90
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 26.9 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 42 EFDFIIVGAGTAGSILASRLAE 63
EFD ++VGAG AG A L+E
Sbjct: 18 EFDAVVVGAGGAGLRAAFGLSE 39
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 26.9 bits (59), Expect = 5.0
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEA----GG 76
+IVG G G A NI L+EA GG
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP:
a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 26.8 bits (60), Expect = 5.1
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 47 IVGAGTAGSILASRLAE 63
++G G G + + L +
Sbjct: 5 VLGCGALGQLWLTALCK 21
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 26.7 bits (60), Expect = 5.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 40 PQEFDFIIVGAGTAG 54
EFD +++G G AG
Sbjct: 25 VDEFDVVVIGGGHAG 39
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY
motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG
EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A*
3a23_A*
Length = 614
Score = 26.7 bits (58), Expect = 5.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 133 SLYYTRGDSRDYDEWGYDAFKFDN 156
S + D + WG+D K D
Sbjct: 120 SEGHYDQDMLQFSTWGFDFVKVDW 143
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 26.4 bits (59), Expect = 5.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 47 IVGAGTAGSILASRLAE 63
I+G G G+ +A L +
Sbjct: 7 IIGPGAVGTTIAYELQQ 23
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 26.5 bits (59), Expect = 6.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 42 EFDFIIVGAGTAG 54
EFD +++GAG AG
Sbjct: 7 EFDAVVIGAGGAG 19
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 26.5 bits (58), Expect = 6.4
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRS-----WNILLVEA----GG 76
+ +I+G G G A + + + LVEA GG
Sbjct: 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 26.3 bits (59), Expect = 6.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 11/40 (27%)
Query: 42 EFDFIIVGAG----TAGSILA-SRLAEVRSWNILLVEAGG 76
+FD II+G +A L +R NILLV+AG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARK------NILLVDAGE 35
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 26.5 bits (59), Expect = 6.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 42 EFDFIIVGAGTAGSILASRLAE 63
+ D IVGAG AG A A+
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQ 26
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 26.3 bits (59), Expect = 7.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 41 QEFDFIIVGAGTAGSILASRLA 62
E D +I+G G G + A + A
Sbjct: 5 DENDVVIIGGGPGGYVAAIKAA 26
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 26.5 bits (59), Expect = 7.4
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 42 EFDFIIVGAGTAG 54
D +++G G AG
Sbjct: 5 YCDSLVIGGGLAG 17
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 26.3 bits (59), Expect = 7.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 41 QEFDFIIVGAGTAGSILASRLA 62
+ D +I+G G AG + A + A
Sbjct: 4 KSHDVVIIGGGPAGYVAAIKAA 25
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 26.2 bits (58), Expect = 7.8
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 46 IIVGAGTAGSILASRLAE--VRSWNILLVEAGGDPSNISY 83
I+GAG +G +L L + + + +++E +
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDN---VILERQTPDYVLGR 42
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics,
PANE, unknown function, cytoplasm, NADP,
oxidoreductase; 1.90A {Bacillus subtilis}
Length = 307
Score = 26.0 bits (58), Expect = 7.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 47 IVGAGTAGSILASRLAE 63
I+G G+ G + A L+
Sbjct: 7 IIGGGSVGLLCAYYLSL 23
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 26.4 bits (59), Expect = 8.0
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
+ D I++G G G+ +A A R ++L++EA
Sbjct: 2 ETKDLIVIGGGINGAGIA-ADAAGRGLSVLMLEAQ 35
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 26.4 bits (59), Expect = 8.1
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS 79
+IVG G G LA +L++ ++ + +++ P
Sbjct: 12 VIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVPY 43
>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing
endonuclease, hydrolase, intron homing, mitochondrion,
mRNA processing, mRNA splicing; 2.40A {Emericella
nidulans} PDB: 1p8k_Z 3eh8_A 3uvf_A
Length = 254
Score = 26.1 bits (57), Expect = 8.2
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 156 NVLKYFKKSEFMTDSSKYNEF 176
N++K+ + + +K ++
Sbjct: 211 NIIKFLQNAPVKLLGNKKLQY 231
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 26.3 bits (59), Expect = 8.5
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 28 SVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLA 62
P P +D++++G G+ G + ++R A
Sbjct: 6 PQPQGPPPAAGAVASYDYLVIGGGSGG-LASARRA 39
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW
YORK structura genomics research consortium, TIM barrel;
HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A
3t9p_A 3t8q_A
Length = 388
Score = 26.0 bits (58), Expect = 8.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 142 RDYDEWGYDAFKFD 155
R D G+ AFK
Sbjct: 156 RLRDTQGFTAFKVR 169
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 26.2 bits (57), Expect = 8.9
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG--GDPSNISY 83
+++G+G G A LA + +++ ++ D S+ ++
Sbjct: 8 RVVVLGSGVIGLSSALILAR-KGYSVHILARDLPEDVSSQTF 48
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 26.0 bits (58), Expect = 8.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 44 DFIIVGAGTAGSILASRL 61
+ +IVG G AG +A L
Sbjct: 6 NVVIVGTGLAGVEVAFGL 23
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 26.0 bits (58), Expect = 9.3
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 46 IIVGAGTAGSILASRLAE 63
I+G+G AG L
Sbjct: 3 YIIGSGIAGLSAGVALRR 20
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 25.8 bits (57), Expect = 9.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 116 RTTIPCGKGLGGSSSI 131
+T +P +GLG S+++
Sbjct: 92 QTNLPPSRGLGSSAAV 107
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 25.9 bits (58), Expect = 9.6
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 27 TSVPHTPQDPDQWPQEFDFIIVGAGTAG---SILASR 60
+ +P T ++FD IIVG G A ++ ++R
Sbjct: 2 SLLPRTTSVKPG--EKFDVIIVGLGPAAYGAALYSAR 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.402
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,955,031
Number of extensions: 166743
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 178
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)