BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6709
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W2W|A Chain A, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|E Chain E, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|I Chain I, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|M Chain M, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
Length = 211
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 102/200 (51%), Gaps = 66/200 (33%)
Query: 3 SLQSIIYEKH-----SLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGC 57
SL++I++++ S+K+LDQLLLP+T+K V I+ ++D Y IKS QVRGAPAIAIVG
Sbjct: 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSXQVRGAPAIAIVGS 61
Query: 58 LGLVVDIK-DKQFPDNEL------------------------------IQLIESMLE--- 83
L ++ +++ K P +++ + L S++E
Sbjct: 62 LSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKN 121
Query: 84 --KDISDNKAI----------------------GRNGAQALIDL---NPRVSKLNVLTHC 116
K SD KA G NGA+ LID+ + + VLT C
Sbjct: 122 ILKSSSDLKAFDGSLYNYVCELIDEDLANNXKXGDNGAKYLIDVLQKDGFKDEFAVLTIC 181
Query: 117 NTGSLATAEYGTALGVIRSL 136
NTGSLAT+ YGTALGVIRSL
Sbjct: 182 NTGSLATSGYGTALGVIRSL 201
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 154 DSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLE 213
+S + + ++LD+L+S+RPTAVN+ + +K+ L +S + L + +++
Sbjct: 89 ESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKS---SSDLKAFDGSLYNYVCELID 145
Query: 214 KDISDNKAIGRNGAQALIDL---NPGVSKLNVLTHCNTGSLATAEYGTALGVIRSL 266
+D+++N G NGA+ LID+ + + VLT CNTGSLAT+ YGTALGVIRSL
Sbjct: 146 EDLANNXKXGDNGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSL 201
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 12/192 (6%)
Query: 100 LIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKI---VDIKDKQFPDNDSL 156
LID KL V+ N LA A A+ +L A + ++++F D D L
Sbjct: 14 LIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIALAAREREFADVDEL 73
Query: 157 EKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDI 216
++++ + D+L S RPTAVN+ ++ +L+ K V VK ++ E + E+D+
Sbjct: 74 KEHLKKAADFLASTRPTAVNL---FVGIERALNAALKGESVEEVKELALREAEKLAEEDV 130
Query: 217 SDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAY 276
N+ +G GA+ L D + VLT+CN G LAT ++GTALGV+RS K
Sbjct: 131 ERNRKMGEYGAELLEDGD------VVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVI 184
Query: 277 CTETRPYNQGAR 288
ETRP NQG+R
Sbjct: 185 ACETRPLNQGSR 196
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 53/179 (29%)
Query: 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV 62
SL+SI ++ LK++DQ LP ++++ NVE+ AIK + VRGAPA+ G G+ +
Sbjct: 2 SLRSIFWD-DGLKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIAL 60
Query: 63 DIKDKQFPD-NEL---------------------------------------------IQ 76
++++F D +EL ++
Sbjct: 61 AAREREFADVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALR 120
Query: 77 LIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRS 135
E + E+D+ N+ +G GA+ L D + VLT+CN G LAT ++GTALGV+RS
Sbjct: 121 EAEKLAEEDVERNRKMGEYGAELLEDGD------VVLTYCNAGRLATVDWGTALGVVRS 173
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 156 LEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKD 215
++ ++ D++ ++RPTAVN+ +K+ + + V ++L E++ D
Sbjct: 93 VQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTND 152
Query: 216 ISDNKAIGRNGAQALIDLN--PGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIG 273
++ N+ I R+GA ++ G K+++LT CNTG+LAT+ YGTALGV+R L K+
Sbjct: 153 VAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLE 212
Query: 274 AAYCTETRPYNQGAR 288
Y ETRP+NQGAR
Sbjct: 213 RVYACETRPWNQGAR 227
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 55/195 (28%)
Query: 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV 62
+L+SI Y SL++LDQ LP + D+ VED + AIK +VRGAPAIA+ LG+ V
Sbjct: 17 TLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEXRVRGAPAIAVSAALGIAV 76
Query: 63 -------------------------------------------DIK---DKQFPD----- 71
D+K DK P
Sbjct: 77 ATQRKAANGELKSGREVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAE 136
Query: 72 --NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVS--KLNVLTHCNTGSLATAEYG 127
++L E++ D++ N+ I R+GA ++ K+++LT CNTG+LAT+ YG
Sbjct: 137 VAQAFVELAEAVYTNDVAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYG 196
Query: 128 TALGVIRSLHGANKI 142
TALGV+R L K+
Sbjct: 197 TALGVVRQLFYDGKL 211
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 95/214 (44%), Gaps = 62/214 (28%)
Query: 9 YEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKD-- 66
+ +SLK+LDQ LP + V+ E+ AIK VRGAPAI + G V+ ++D
Sbjct: 12 WSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEXIVRGAPAIGVAAAFGYVLGLRDYK 71
Query: 67 ---------------------------------KQFPDN----ELIQLIESMLEK----D 85
K F +N L +++E+ K D
Sbjct: 72 TGSLTDWXKQVKETLARTRPTAVNLFWALNRXEKVFFENADRENLFEILENEALKXAYED 131
Query: 86 ISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDI 145
I NKAIG+NGAQ + D + +LTHCN G+LAT +YGTALGVIR+ + K + +
Sbjct: 132 IEVNKAIGKNGAQLIKDGS------TILTHCNAGALATVDYGTALGVIRAAVESGKRIRV 185
Query: 146 KDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKR 179
+ E YL AR TA + +
Sbjct: 186 -------------FADETRPYLQGARLTAWELXK 206
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 17/138 (12%)
Query: 155 SLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEK 214
SL + + + L RPTAVN+ A + + E N + L +++E+ K
Sbjct: 74 SLTDWXKQVKETLARTRPTAVNLFWALNRXEKVFFE-------NADRENLFEILENEALK 126
Query: 215 ----DISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGAN 270
DI NKAIG+NGAQ + D + +LTHCN G+LAT +YGTALGVIR+ +
Sbjct: 127 XAYEDIEVNKAIGKNGAQLIKDGS------TILTHCNAGALATVDYGTALGVIRAAVESG 180
Query: 271 KIGAAYCTETRPYNQGAR 288
K + ETRPY QGAR
Sbjct: 181 KRIRVFADETRPYLQGAR 198
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 166 YLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRN 225
YL S+RPTA+N+ A + + S+ A VN KT L+ + +D + IG+N
Sbjct: 110 YLNSSRPTAINLSWALERLSHSVE---NAISVNEAKTNLVHEAIQIQVEDEETCRLIGQN 166
Query: 226 GAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIG-AAYCTETRPYN 284
Q + ++T CN GS+AT+ YGTAL L +G Y ETRP
Sbjct: 167 ALQLFKKGD------RIMTICNAGSIATSRYGTALAPFY-LAKQKDLGLHIYACETRPVL 219
Query: 285 QGAR 288
QG+R
Sbjct: 220 QGSR 223
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 52/173 (30%)
Query: 5 QSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDI 64
+S+ +++ ++ IL+Q LP ++ +++ ED + AI +++VRGAPAI I GL +
Sbjct: 30 RSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAA 89
Query: 65 KD----------------KQFPDNE---------LIQLIESMLEKDISDNKA-------- 91
KD KQ+ ++ ++ + +E IS N+A
Sbjct: 90 KDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAISVNEAKTNLVHEA 149
Query: 92 -------------IGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALG 131
IG+N Q L R ++T CN GS+AT+ YGTAL
Sbjct: 150 IQIQVEDEETCRLIGQNALQ-LFKKGDR-----IMTICNAGSIATSRYGTALA 196
>pdb|1ONK|B Chain B, Mistletoe Lectin I From Viscum Album
Length = 263
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGA 97
P + IVG G+ VD++D F D IQL S D + I R+G
Sbjct: 10 PTVRIVGRNGMRVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDGT 57
>pdb|1PC8|B Chain B, Crystal Structure Of A Novel Form Of Mistletoe Lectin
From Himalayan Viscum Album L. At 3.8a Resolution
pdb|1TFM|B Chain B, Crystal Structure Of A Ribosome Inactivating Protein In
Its Naturally Inhibited Form
pdb|1YF8|B Chain B, Crystal Structure Of Himalayan Mistletoe Rip Reveals The
Presence Of A Natural Inhibitor And A New Functionally
Active Sugar-Binding Site
Length = 255
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
P + IVG G+ VD++D F D IQL S D + I R+G
Sbjct: 6 PTVRIVGRNGMNVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDG 52
>pdb|3O5W|B Chain B, Binding Of Kinetin In The Active Site Of Mistletoe
Lectin I
Length = 263
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
P + IVG G+ VD++D F D IQL S D + I ++G
Sbjct: 10 PTVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDG 56
>pdb|1CE7|B Chain B, Mistletoe Lectin I From Viscum Album
pdb|2MLL|B Chain B, Mistletoe Lectin I From Viscum Album
Length = 255
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
P + IVG G+ VD++D F D IQL S D + I R+G
Sbjct: 6 PTVRIVGRNGMNVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKRDG 52
>pdb|1PUU|B Chain B, Mistletoe Lectin I In Complex With Lactose
Length = 263
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
P + IVG G+ VD++D F D IQL S D + I ++G
Sbjct: 10 PIVRIVGRNGMTVDVRDDDFQDGNQIQLWPSKSNNDPNQLWTIKKDG 56
>pdb|2RG9|B Chain B, Crystal Structure Of Viscum Album Mistletoe Lectin I In
Native State At 1.95 A Resolution, Comparison Of
Structure Active Site Conformation In Ricin And In
Viscumin
Length = 263
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGA 97
P + IVG G+ VD++D F D IQL S D + I ++G
Sbjct: 10 PIVRIVGRNGMTVDVRDDDFQDGNQIQLWPSKSNNDPNQLWTIKKDGT 57
>pdb|1PUM|B Chain B, Mistletoe Lectin I In Complex With Galactose
pdb|1SZ6|B Chain B, Mistletoe Lectin I From Viscum Album. Crystal Structure
At 2.05 A Resolution
Length = 263
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
P + IVG G+ VD++D F D IQL S D + I ++G
Sbjct: 10 PIVRIVGRNGMTVDVRDDDFQDGNQIQLWPSKSNNDPNQLWTIKKDG 56
>pdb|3D7W|B Chain B, Mistletoe Lectin I In Complex With Zeatin
Length = 265
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
P + IVG G+ VD++D F D IQL S D + I ++G
Sbjct: 10 PIVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDG 56
>pdb|1M2T|B Chain B, Mistletoe Lectin I From Viscum Album In Complex With
Adenine Monophosphate. Crystal Structure At 1.9 A
Resolution
pdb|2R9K|B Chain B, Crystal Structure Of Misteltoe Lectin I In Complex With
Phloretamide
Length = 263
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
P + IVG G+ VD++D F D IQL S D + I ++G
Sbjct: 10 PIVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDG 56
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 196 PVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAE 255
P+ + + ES L K++S IGR+G++ LI++ P + L TG
Sbjct: 597 PIGKLVSYRTNFQESWLWKNVS----IGRSGSRKLIEVVPDTTTSWYL----TGFSIDPV 648
Query: 256 YGTALGVIRSLHGANKIGAAYCTETRPYN 284
YG LG+I+ + Y E PY+
Sbjct: 649 YG--LGIIKKPIQFTTVQPFYIVENLPYS 675
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 196 PVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAE 255
P+ + + ES L K++S IGR+G++ LI++ P + L TG
Sbjct: 597 PIGKLVSYRTNFQESWLWKNVS----IGRSGSRKLIEVVPDTTTSWYL----TGFSIDPV 648
Query: 256 YGTALGVIRSLHGANKIGAAYCTETRPYN 284
YG LG+I+ + Y E PY+
Sbjct: 649 YG--LGIIKKPIQFTTVQPFYIVENLPYS 675
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 196 PVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAE 255
P+ + + ES L K++S IGR+G++ LI++ P + L TG
Sbjct: 597 PIGKLVSYRTNFQESWLWKNVS----IGRSGSRKLIEVVPDTTTSWYL----TGFSIDPV 648
Query: 256 YGTALGVIRSLHGANKIGAAYCTETRPYN 284
YG LG+I+ + Y E PY+
Sbjct: 649 YG--LGIIKKPIQFTTVQPFYIVENLPYS 675
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 240 LNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCT 278
+N T SL +YG +L R + G N +G Y T
Sbjct: 237 MNQFMTDPTNSLVYLQYGASLAAFRDIAGDNSVGVTYAT 275
>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181
pdb|3AWD|B Chain B, Crystal Structure Of Gox2181
pdb|3AWD|C Chain C, Crystal Structure Of Gox2181
pdb|3AWD|D Chain D, Crystal Structure Of Gox2181
Length = 260
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 25 TSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV-DIKDKQFPDNELIQLIESMLE 83
+S ++D+ N E A++S+ + +V C G+ + ++K + D + ++ ++ L
Sbjct: 65 SSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLN 124
Query: 84 KDISDNKAIGR 94
+A+GR
Sbjct: 125 GMFRSCQAVGR 135
>pdb|2AAI|B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms
pdb|3RTI|B Chain B, Crystal Structure Of Ricin Bound With Formycin
Monophosphate
pdb|3RTJ|B Chain B, Crystal Structure Of Ricin Bound With Dinucleotide Apg
Length = 262
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 50 PAIAIVGCLGLVVDIKDKQFPDNELIQL 77
P + IVG GL VD++D +F + IQL
Sbjct: 9 PIVRIVGRNGLCVDVRDGRFHNGNAIQL 36
>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
Length = 392
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 81 MLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTH-CNTGSLATAEYGTALGVIRSLHGA 139
+LE ++ N+AI ++ +P ++ ++V H +G++ + A+G + S HGA
Sbjct: 109 LLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPID---AIGALVSAHGA 165
Query: 140 NKIVD 144
IVD
Sbjct: 166 YLIVD 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,953,803
Number of Sequences: 62578
Number of extensions: 310876
Number of successful extensions: 665
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 46
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)