Query psy6709
Match_columns 288
No_of_seqs 210 out of 1433
Neff 4.1
Searched_HMMs 46136
Date Sat Aug 17 01:00:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0182 Predicted translation 100.0 8.4E-65 1.8E-69 479.0 23.3 198 2-288 1-199 (346)
2 KOG1468|consensus 100.0 5.8E-63 1.3E-67 460.3 20.1 204 2-288 1-204 (354)
3 PRK08334 translation initiatio 100.0 4.4E-56 9.6E-61 425.3 22.2 196 4-288 14-209 (356)
4 PRK05772 translation initiatio 100.0 9.7E-54 2.1E-58 410.0 23.4 199 3-288 15-217 (363)
5 PRK06036 translation initiatio 100.0 2.2E-53 4.8E-58 404.4 22.3 195 4-288 1-197 (339)
6 TIGR00512 salvage_mtnA S-methy 100.0 2E-52 4.4E-57 396.8 22.5 196 5-288 1-196 (331)
7 PRK05720 mtnA methylthioribose 100.0 8.9E-52 1.9E-56 393.9 22.8 195 3-288 2-196 (344)
8 PRK06371 translation initiatio 100.0 1.9E-50 4.1E-55 383.2 18.7 177 2-288 10-186 (329)
9 TIGR00524 eIF-2B_rel eIF-2B al 100.0 1.5E-36 3.2E-41 284.8 19.1 168 31-288 1-168 (303)
10 PRK08335 translation initiatio 100.0 2.6E-32 5.7E-37 254.0 15.9 149 31-288 3-151 (275)
11 COG0182 Predicted translation 100.0 1.1E-31 2.4E-36 254.4 1.9 140 68-234 115-261 (346)
12 TIGR00511 ribulose_e2b2 ribose 100.0 6.5E-29 1.4E-33 232.6 18.5 155 33-286 1-155 (301)
13 PRK08535 translation initiatio 100.0 5.2E-28 1.1E-32 227.1 18.0 156 32-286 5-160 (310)
14 KOG1468|consensus 99.9 4.2E-29 9E-34 233.8 2.6 143 71-234 117-266 (354)
15 PRK08334 translation initiatio 99.9 1E-24 2.2E-29 209.6 -1.5 145 72-248 130-281 (356)
16 PRK06036 translation initiatio 99.9 4.8E-23 1E-27 196.8 1.5 145 72-248 117-268 (339)
17 PRK05772 translation initiatio 99.8 5.6E-23 1.2E-27 198.0 -1.6 147 72-249 136-290 (363)
18 PRK05720 mtnA methylthioribose 99.8 7.9E-23 1.7E-27 195.6 -1.8 137 71-234 115-258 (344)
19 TIGR00512 salvage_mtnA S-methy 99.8 3.2E-22 7E-27 190.7 -1.8 149 71-250 111-270 (331)
20 PRK06371 translation initiatio 99.8 5.5E-22 1.2E-26 189.1 -2.6 143 75-248 109-258 (329)
21 TIGR00524 eIF-2B_rel eIF-2B al 99.8 5.5E-20 1.2E-24 173.1 -2.1 136 72-234 88-230 (303)
22 PF01008 IF-2B: Initiation fac 99.7 6.1E-17 1.3E-21 147.6 14.7 121 152-286 27-147 (282)
23 COG1184 GCD2 Translation initi 99.7 1.6E-15 3.4E-20 143.6 16.2 155 33-286 5-159 (301)
24 PRK08335 translation initiatio 99.6 3.1E-17 6.7E-22 153.3 -2.4 126 71-234 78-210 (275)
25 PRK08535 translation initiatio 99.5 5.6E-15 1.2E-19 139.2 -1.4 126 71-234 89-221 (310)
26 TIGR00511 ribulose_e2b2 ribose 99.4 6E-15 1.3E-19 138.7 -2.0 125 72-234 85-216 (301)
27 COG1184 GCD2 Translation initi 99.0 2.3E-11 5E-16 115.5 -3.9 125 71-233 88-219 (301)
28 PF01008 IF-2B: Initiation fac 98.8 5.9E-11 1.3E-15 108.5 -7.4 126 72-234 77-209 (282)
29 KOG1466|consensus 98.4 9.1E-06 2E-10 77.0 15.8 123 150-286 46-170 (313)
30 KOG1466|consensus 97.5 4.9E-06 1.1E-10 78.8 -3.7 124 72-233 100-230 (313)
31 PRK06372 translation initiatio 97.4 9.8E-06 2.1E-10 75.7 -3.4 114 79-234 64-184 (253)
32 PRK06372 translation initiatio 97.2 0.0028 6.1E-08 59.4 9.8 91 163-287 34-124 (253)
33 KOG1465|consensus 96.9 0.054 1.2E-06 52.8 16.0 119 154-286 50-202 (353)
34 KOG1467|consensus 94.9 0.49 1.1E-05 48.8 12.9 119 154-287 280-400 (556)
35 KOG1467|consensus 91.2 0.11 2.3E-06 53.5 1.7 153 73-282 329-489 (556)
36 KOG1465|consensus 82.5 0.82 1.8E-05 44.9 2.1 85 71-183 131-215 (353)
37 PF03162 Y_phosphatase2: Tyros 49.5 7.5 0.00016 34.0 0.8 36 239-279 91-126 (164)
38 cd01042 DMQH Demethoxyubiquino 38.5 1.4E+02 0.0031 26.5 7.2 60 91-180 9-68 (165)
39 cd00127 DSPc Dual specificity 38.4 97 0.0021 24.6 5.6 12 109-120 81-92 (139)
40 smart00195 DSPc Dual specifici 32.8 1.3E+02 0.0029 24.1 5.6 12 109-120 78-89 (138)
41 smart00404 PTPc_motif Protein 31.8 2.1E+02 0.0045 21.0 6.2 14 109-122 39-52 (105)
42 smart00012 PTPc_DSPc Protein t 31.8 2.1E+02 0.0045 21.0 6.2 14 109-122 39-52 (105)
43 PF08588 DUF1769: Protein of u 31.7 27 0.00058 26.3 1.2 29 256-286 22-50 (56)
44 PF00782 DSPc: Dual specificit 29.7 1E+02 0.0022 24.5 4.4 46 108-174 72-117 (133)
45 PF03162 Y_phosphatase2: Tyros 25.6 99 0.0022 27.0 3.9 30 108-142 90-119 (164)
46 PTZ00242 protein tyrosine phos 24.8 3.6E+02 0.0079 23.4 7.3 48 108-176 97-144 (166)
47 PF03232 COQ7: Ubiquinone bios 24.3 4.3E+02 0.0094 23.6 7.8 24 157-181 49-72 (172)
48 PF05706 CDKN3: Cyclin-depende 22.4 1.2E+02 0.0025 27.5 3.8 12 239-250 133-144 (168)
49 KOG1716|consensus 21.2 4E+02 0.0087 25.0 7.3 59 109-188 155-216 (285)
50 PF10941 DUF2620: Protein of u 21.1 68 0.0015 27.5 1.9 29 240-274 46-74 (117)
No 1
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-65 Score=479.03 Aligned_cols=198 Identities=42% Similarity=0.599 Sum_probs=185.1
Q ss_pred CcceeEEEeCC-cEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q psy6709 2 KSLQSIIYEKH-SLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIES 80 (288)
Q Consensus 2 ~~~~~i~~~~~-~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~ 80 (288)
+++++|+|+++ +|++||||+||++++|++|++++|+++|||+|+||||||||++|||||++++.+.+.
T Consensus 1 ~~~~~i~w~~~~~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~~----------- 69 (346)
T COG0182 1 MKLRPIEWKDDGSVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESKN----------- 69 (346)
T ss_pred CCceeEEEcCCCeEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhccc-----------
Confidence 46899999988 799999999999999999999999999999999999999999999999999887651
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHH
Q psy6709 81 MLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYV 160 (288)
Q Consensus 81 ~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l 160 (288)
..+.+++..++
T Consensus 70 ---------------------------------------------------------------------~~~~~e~~~~l 80 (346)
T COG0182 70 ---------------------------------------------------------------------DSKGEEFIEAL 80 (346)
T ss_pred ---------------------------------------------------------------------ccchHHHHHHH
Confidence 12346788999
Q ss_pred HHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q psy6709 161 GEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKL 240 (288)
Q Consensus 161 ~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~ 240 (288)
.++...|.++||||+||+|+++||...+.+. .++++.++.++++|.+|.+||++.|++||.+|+++|.+ +.
T Consensus 81 e~a~~~l~~tRPTAvNLfwal~rm~~~~~~~---~~v~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~~------~~ 151 (346)
T COG0182 81 EKAAETLKSTRPTAVNLFWALDRMLNAAKEA---IEVKEPKESILQEAEEIAEEDLEANRAIGENGAELLPD------GD 151 (346)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CC
Confidence 9999999999999999999999999988765 45899999999999999999999999999999999976 56
Q ss_pred ceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 241 NVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 241 ~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
.||||||+|+|||+||||||||||++|++||.++|||+||||||||||
T Consensus 152 ~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGAR 199 (346)
T COG0182 152 TVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGAR 199 (346)
T ss_pred eEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccce
Confidence 899999999999999999999999999999999999999999999998
No 2
>KOG1468|consensus
Probab=100.00 E-value=5.8e-63 Score=460.31 Aligned_cols=204 Identities=55% Similarity=0.857 Sum_probs=189.3
Q ss_pred CcceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q psy6709 2 KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESM 81 (288)
Q Consensus 2 ~~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~ 81 (288)
|+|++|+|+.++|++|||++||++++|+.+.+++|.|.+||+|+|||||+|+|+|+++++++++...
T Consensus 1 msL~aI~y~~~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaIAivg~Lslaveiq~~~------------- 67 (354)
T KOG1468|consen 1 MSLEAIKYDRGSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAIAIVGSLSLAVEIQKKG------------- 67 (354)
T ss_pred CcceeEEecCchHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHhhcc-------------
Confidence 7999999999999999999999999999999999999999999999999999999999999987633
Q ss_pred HHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHH
Q psy6709 82 LEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVG 161 (288)
Q Consensus 82 ~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 161 (288)
+++.++++.|+.
T Consensus 68 --------------------------------------------------------------------~~~~ds~~~~i~ 79 (354)
T KOG1468|consen 68 --------------------------------------------------------------------FPGSDSLKEFII 79 (354)
T ss_pred --------------------------------------------------------------------CCchHHHHHHHH
Confidence 233455688999
Q ss_pred HHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCc
Q psy6709 162 EKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241 (288)
Q Consensus 162 EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~ 241 (288)
....||.+||||||||+++.+.++..+.+.. .......+.++++.+.|+++|...|++||.+|++.|.+..++.++++
T Consensus 80 ~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~--~~~~~~~~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~klt 157 (354)
T KOG1468|consen 80 NKLNFLVSSRPTAVNLANAANELKPIAASED--KSEKAKREKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGKLT 157 (354)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCceE
Confidence 9999999999999999999999998876653 33366788999999999999999999999999999998888888999
Q ss_pred eeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 242 vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
||||||||||||+||||||||||+||+.|+..||||+||||||||+|
T Consensus 158 VlThCNTGSLATagyGTALGVIRsLh~~grLehvyctETRPyNQGsR 204 (354)
T KOG1468|consen 158 VLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTETRPYNQGSR 204 (354)
T ss_pred EEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecccccCCcccc
Confidence 99999999999999999999999999999999999999999999998
No 3
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=4.4e-56 Score=425.26 Aligned_cols=196 Identities=34% Similarity=0.541 Sum_probs=178.9
Q ss_pred ceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q psy6709 4 LQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLE 83 (288)
Q Consensus 4 ~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~ 83 (288)
+++|+|+++.|.||||++||++++|+.|++++|+++|||+|+|||||+||++|||||++++++...
T Consensus 14 ~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaIgvaAa~glal~~~~~~~-------------- 79 (356)
T PRK08334 14 PRSVEYEEGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAETSKA-------------- 79 (356)
T ss_pred CccEEEcCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhccc--------------
Confidence 678999999999999999999999999999999999999999999999999999999998876430
Q ss_pred HHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHH
Q psy6709 84 KDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEK 163 (288)
Q Consensus 84 ~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~Et 163 (288)
.+..+|..++.+.
T Consensus 80 -------------------------------------------------------------------~~~~~~~~~l~~~ 92 (356)
T PRK08334 80 -------------------------------------------------------------------KTKDEFMDGFYKA 92 (356)
T ss_pred -------------------------------------------------------------------CCHHHHHHHHHHH
Confidence 1234567789999
Q ss_pred HHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCcee
Q psy6709 164 LDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVL 243 (288)
Q Consensus 164 rpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vl 243 (288)
..+|..+||||+||+|+.++|...+.+.. ..+.+++++.++++|+.+.++|++.|++||+||+++|.+ +. ||
T Consensus 93 ~~~L~~~RPTavnL~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~i~~~d~~~~~~Ig~~g~~li~d------g~-IL 164 (356)
T PRK08334 93 YETLKNTRPTAVNLFWALNRIKKLVEEHL-EDPLDEIKRLIVEEAQKIADEDVEANLRMGHYGAEVLPE------GN-VL 164 (356)
T ss_pred HHHHHHcCCcHHhHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CC-EE
Confidence 99999999999999999999988775431 256889999999999999999999999999999999975 34 99
Q ss_pred ecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 244 THCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 244 Thcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
||||+|+|||+||||||||||++|++||.++|||+||||++||+|
T Consensus 165 THcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~r 209 (356)
T PRK08334 165 THCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGAR 209 (356)
T ss_pred EecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHH
Confidence 999999999999999999999999999999999999999999986
No 4
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=9.7e-54 Score=410.04 Aligned_cols=199 Identities=34% Similarity=0.476 Sum_probs=180.6
Q ss_pred cceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q psy6709 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESML 82 (288)
Q Consensus 3 ~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~ 82 (288)
.+++|+|+++.|.||||++||++++|++|++++|+++|||+|+|||||+||++|||||++++.+...
T Consensus 15 ~~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaigiaAa~glal~~~~~~~------------- 81 (363)
T PRK05772 15 KLLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAIGITAGYGMVLALIENNV------------- 81 (363)
T ss_pred CCceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHhccC-------------
Confidence 4789999999999999999999999999999999999999999999999999999999998876430
Q ss_pred HHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHH
Q psy6709 83 EKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGE 162 (288)
Q Consensus 83 ~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~E 162 (288)
.+.+++...+.+
T Consensus 82 --------------------------------------------------------------------~~~~~~~~~l~~ 93 (363)
T PRK05772 82 --------------------------------------------------------------------KTLDDAIRELTR 93 (363)
T ss_pred --------------------------------------------------------------------CCHHHHHHHHHH
Confidence 122445677999
Q ss_pred HHHhHhhCCCcHHHHHHHHHHHHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC
Q psy6709 163 KLDYLVSARPTAVNMKRAADSVKSSLSEWA---KASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSK 239 (288)
Q Consensus 163 trpyLqgARPTAvnL~~A~~~v~~~~~~~~---~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~ 239 (288)
+..+|..+||||+||+|+.++|++.+.... ...+.+++++.++++|+++.++|++.|++||++|+++|.+ +
T Consensus 94 ~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~~~~I~~~g~~~I~d------g 167 (363)
T PRK05772 94 AKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEYDAEIQMGLYGLEKLND------G 167 (363)
T ss_pred HHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------C
Confidence 999999999999999999999998765432 1246789999999999999999999999999999999975 5
Q ss_pred CceeecCCCCcccc-cccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 240 LNVLTHCNTGSLAT-AEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 240 ~~vlThcntg~lAt-~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
.+||||||+|+||| +|||||||+|+.+|++||.++|||+||||++||+|
T Consensus 168 ~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~r 217 (363)
T PRK05772 168 DTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSR 217 (363)
T ss_pred CEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHH
Confidence 68999999999999 99999999999999999999999999999999985
No 5
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.2e-53 Score=404.41 Aligned_cols=195 Identities=39% Similarity=0.581 Sum_probs=177.8
Q ss_pred ceeEEEeC--CcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q psy6709 4 LQSIIYEK--HSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESM 81 (288)
Q Consensus 4 ~~~i~~~~--~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~ 81 (288)
+++|+|++ +.|.||||++||++++|++|++++|+++|||+|+|||||+||++|||||++++++.+.
T Consensus 1 ~~~i~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApaig~aaa~g~~l~~~~~~~------------ 68 (339)
T PRK06036 1 MRTIDWNDESNSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPALGAAGGYGIALAARLSKA------------ 68 (339)
T ss_pred CCcEEEcCCCCeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhccc------------
Confidence 36899998 9999999999999999999999999999999999999999999999999999876431
Q ss_pred HHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHH
Q psy6709 82 LEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVG 161 (288)
Q Consensus 82 ~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 161 (288)
.+.+++...+.
T Consensus 69 ---------------------------------------------------------------------~~~~~~~~~l~ 79 (339)
T PRK06036 69 ---------------------------------------------------------------------KDVDELLKDLK 79 (339)
T ss_pred ---------------------------------------------------------------------CCHHHHHHHHH
Confidence 12345677899
Q ss_pred HHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCc
Q psy6709 162 EKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241 (288)
Q Consensus 162 EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~ 241 (288)
+...+|..+||||+||+|+.+++.....+ ..+.+++++.++++++++.++|.+.|++||++|+++|.+ +..
T Consensus 80 ~~~~~L~~aRPTavnL~~a~~r~~~~~~~---~~~~~~~~~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ 150 (339)
T PRK06036 80 VAAETLKSTRPTAVNLSWGVDRVLKAALD---AEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLED------GDT 150 (339)
T ss_pred HHHHHHHHhCCcHhhHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCE
Confidence 99999999999999999999999875543 246788999999999999999999999999999999875 468
Q ss_pred eeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 242 vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
||||||+|+|||+|||||||+|+.+|++||.++|||+||||++||+|
T Consensus 151 ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~r 197 (339)
T PRK06036 151 VLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSR 197 (339)
T ss_pred EEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHH
Confidence 99999999999999999999999999999999999999999999986
No 6
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=2e-52 Score=396.77 Aligned_cols=196 Identities=47% Similarity=0.748 Sum_probs=176.3
Q ss_pred eeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q psy6709 5 QSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEK 84 (288)
Q Consensus 5 ~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~ 84 (288)
++|+|++++|.||||++||++++|++|++++|+++|||+|+|||||+||++|||||++++.+..
T Consensus 1 ~~i~~~~~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApaig~~aa~~~~l~~~~~~---------------- 64 (331)
T TIGR00512 1 RAIKWNRGSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREAD---------------- 64 (331)
T ss_pred CCEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHhhcC----------------
Confidence 5799999999999999999999999999999999999999999999999999999998876521
Q ss_pred HHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHH
Q psy6709 85 DISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKL 164 (288)
Q Consensus 85 ~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~Etr 164 (288)
+..++..++.+..
T Consensus 65 -------------------------------------------------------------------~~~~~~~~l~~~~ 77 (331)
T TIGR00512 65 -------------------------------------------------------------------EREEFKALLEEKL 77 (331)
T ss_pred -------------------------------------------------------------------CHHHHHHHHHHHH
Confidence 1234577899999
Q ss_pred HhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceee
Q psy6709 165 DYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLT 244 (288)
Q Consensus 165 pyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlT 244 (288)
.+|..+||||+||+|+.++++..+... .+.+++++.+++.++++.++++..|++||++|+++|.+.- ..+++|||
T Consensus 78 ~~L~~~RPtavnL~~A~~~~~~~i~~~---~~~~~~k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~dg~--~~~~~ILT 152 (331)
T TIGR00512 78 QYLVSSRPTAVNLSWALDRMRAALEAA---KTVADIKEALLAEAERILEEDLEDNRAIGENGAALIKKGV--AAPLRVLT 152 (331)
T ss_pred HHHHHhCCcHhhHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEe
Confidence 999999999999999999998776542 5678899999999999999999999999999999997520 00238999
Q ss_pred cCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 245 HCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 245 hcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
|||+|+|||+|||||+++|+.+|++||..+|||+||||++||+|
T Consensus 153 hcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~r 196 (331)
T TIGR00512 153 HCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGAR 196 (331)
T ss_pred ecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHH
Confidence 99999999999999999999999999999999999999999975
No 7
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=8.9e-52 Score=393.89 Aligned_cols=195 Identities=36% Similarity=0.528 Sum_probs=178.4
Q ss_pred cceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q psy6709 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESML 82 (288)
Q Consensus 3 ~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~ 82 (288)
.+++|.|+++.|.||||++||++++|+.|++++|+++|||+|+|||||+||++|||||++++.+..
T Consensus 2 ~~~~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApaig~aaa~~lal~~~~~~-------------- 67 (344)
T PRK05720 2 QPRPVAWKDGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAIGIAAAYGMALAAREDA-------------- 67 (344)
T ss_pred CcceEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHHHHHHHHHHHHHHhhcc--------------
Confidence 468999999999999999999999999999999999999999999999999999999998877643
Q ss_pred HHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHH
Q psy6709 83 EKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGE 162 (288)
Q Consensus 83 ~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~E 162 (288)
..+..++...+.+
T Consensus 68 -------------------------------------------------------------------~~~~~~~~~~l~~ 80 (344)
T PRK05720 68 -------------------------------------------------------------------SDDGEEFLKKLEE 80 (344)
T ss_pred -------------------------------------------------------------------CCCHHHHHHHHHH
Confidence 1123456778999
Q ss_pred HHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCce
Q psy6709 163 KLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNV 242 (288)
Q Consensus 163 trpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~v 242 (288)
...+|..+||||+||+|+.++++..+.. .+.+++++.+++.++++.++|+..|++||++|+++|.+ +..|
T Consensus 81 ~~~~L~~~RPtavnL~~ai~~~~~~i~~----~~~~~~~~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~I 150 (344)
T PRK05720 81 AAAYLAASRPTAVNLFWALDRMREVLAP----LPGAERKAALEEEAIEIHEEDVEINRAIGEHGLTLIRK------GQGI 150 (344)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCEE
Confidence 9999999999999999999999876643 35788999999999999999999999999999999975 4689
Q ss_pred eecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 243 LTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 243 lThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
|||||+|+|||.|||||||+|+.+|++||.++|||+||||++||+|
T Consensus 151 LThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~ 196 (344)
T PRK05720 151 LTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGAR 196 (344)
T ss_pred EEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHH
Confidence 9999999999999999999999999999999999999999999975
No 8
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.9e-50 Score=383.22 Aligned_cols=177 Identities=35% Similarity=0.529 Sum_probs=161.3
Q ss_pred CcceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q psy6709 2 KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESM 81 (288)
Q Consensus 2 ~~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~ 81 (288)
|.+++|+|++++|.||||++||++++|++|++++|+++|||+|+|||||+||++|||||++++.+.
T Consensus 10 ~~~~~~~~~~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~ig~~aa~g~~l~~~~~-------------- 75 (329)
T PRK06371 10 KTLKAVWYEDGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKNG-------------- 75 (329)
T ss_pred eeEEEEEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhH--------------
Confidence 568999999999999999999999999999999999999999999999999999999999876431
Q ss_pred HHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHH
Q psy6709 82 LEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVG 161 (288)
Q Consensus 82 ~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 161 (288)
..+.
T Consensus 76 ----------------------------------------------------------------------------~~~~ 79 (329)
T PRK06371 76 ----------------------------------------------------------------------------ENMD 79 (329)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 2356
Q ss_pred HHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCc
Q psy6709 162 EKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241 (288)
Q Consensus 162 EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~ 241 (288)
+...+|..+||||+||+|+.++|+... .+ +++|.++.+||++.|++||++|+++|.+ +..
T Consensus 80 ~~~~~L~~~RPtavnL~~a~~~~~~~~------~~--------~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ 139 (329)
T PRK06371 80 EAVEKIRSTRPTAYDLFKAIRYMNSNE------FD--------MNAARRYAMEIIGRSKKIGEYGNELIKN------GAR 139 (329)
T ss_pred HHHHHHHhcCcchhhHHHHHHHHHhhc------Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCE
Confidence 778899999999999999999986421 11 6788899999999999999999999965 468
Q ss_pred eeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 242 vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
||||||+|+|||+|||||+++||.+|++||.++|||+||||++||+|
T Consensus 140 ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~r 186 (329)
T PRK06371 140 ILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGAR 186 (329)
T ss_pred EEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999976
No 9
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=1.5e-36 Score=284.80 Aligned_cols=168 Identities=41% Similarity=0.596 Sum_probs=151.2
Q ss_pred cCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCC
Q psy6709 31 INNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKL 110 (288)
Q Consensus 31 ~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~ 110 (288)
|++++|++++||+|+|||||+||++|++++++.++..+
T Consensus 1 ~~~~~~~~~~I~~m~vrGa~~ia~aa~~~l~~~~~~~~------------------------------------------ 38 (303)
T TIGR00524 1 CRTYEDVADAIKSMVVRGAPAIGVAAAYGLALAARKIE------------------------------------------ 38 (303)
T ss_pred CCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhcc------------------------------------------
Confidence 67999999999999999999999999999998876543
Q ss_pred ccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHh
Q psy6709 111 NVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSE 190 (288)
Q Consensus 111 ~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~ 190 (288)
..+.+++...+.+...+|..+|||+++|.|+.++++..+.+
T Consensus 39 ---------------------------------------~~~~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~~ 79 (303)
T TIGR00524 39 ---------------------------------------TDNVEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAEN 79 (303)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHhc
Confidence 11334567788999999999999999999999999887643
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCC
Q psy6709 191 WAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGAN 270 (288)
Q Consensus 191 ~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~ 270 (288)
. .+.++.++.+++.++.+.+++...+++|+++|+++|.+ +..||||||+|+|||+||||++++|+.+|++|
T Consensus 80 ~---~~~~~~k~~l~~~~~~~~~e~~~~~~~Ia~~a~~~I~~------g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g 150 (303)
T TIGR00524 80 G---ESVEEAKESLLREAIEIIEEDLETNRKIGENGAKLIKD------GDTVLTHCNAGALATSDYGTALGVIRSAWEDG 150 (303)
T ss_pred c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCEEEEecCCccccccCcchHHHHHHHHHHcC
Confidence 2 56788999999999999999999999999999999875 46899999999999999999999999999999
Q ss_pred CcceEEeCCCCCCccCCC
Q psy6709 271 KIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 271 ~~~~~~~~ETrP~~QGaR 288 (288)
|..+|||+||||++||+|
T Consensus 151 ~~~~V~v~EsrP~~~G~~ 168 (303)
T TIGR00524 151 KRIRVIACETRPRNQGSR 168 (303)
T ss_pred CceEEEECCCCCccchHH
Confidence 999999999999999964
No 10
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=2.6e-32 Score=253.98 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=130.9
Q ss_pred cCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCC
Q psy6709 31 INNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKL 110 (288)
Q Consensus 31 ~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~ 110 (288)
.+++.++.+.|++|+|||||+||++||||+++++....
T Consensus 3 ~~~~~~~~~~i~~m~vrGAp~i~~~aa~~l~~~a~~~~------------------------------------------ 40 (275)
T PRK08335 3 PPEVREILEEMKAERIRGASWLAKKGAEAYLLLAEELD------------------------------------------ 40 (275)
T ss_pred chHHHHHHHHHhhceecCHHHHHHHHHHHHHHHHHhcC------------------------------------------
Confidence 46789999999999999999999999999997765422
Q ss_pred ccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHh
Q psy6709 111 NVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSE 190 (288)
Q Consensus 111 ~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~ 190 (288)
.+++...+.+...+|..+||||+||+|+.++|.
T Consensus 41 ------------------------------------------~~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~----- 73 (275)
T PRK08335 41 ------------------------------------------GEELENALKELREEIPEVNPTMASLYNLARFIP----- 73 (275)
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc-----
Confidence 123456688899999999999999999999982
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCC
Q psy6709 191 WAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGAN 270 (288)
Q Consensus 191 ~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~ 270 (288)
.++..+.+.++|+++.+++.+.|++||++|+++|.+ +..||||||+ ||++++|+++|++|
T Consensus 74 ------~~~~~~~~~~~a~~~~~~~~~~~~~I~~~a~~~I~~------g~~ILTh~~S--------~tv~~~l~~A~~~g 133 (275)
T PRK08335 74 ------ITNNPELVKSRAEEFLRLMEEAKREIGNIGSELIDD------GDVIITHSFS--------SAVLEILKTAKRKG 133 (275)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCEEEEECCc--------HHHHHHHHHHHHcC
Confidence 123467789999999999999999999999999864 5689999999 89999999999999
Q ss_pred CcceEEeCCCCCCccCCC
Q psy6709 271 KIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 271 ~~~~~~~~ETrP~~QGaR 288 (288)
|.++|||+||||++||+|
T Consensus 134 k~~~V~v~EsrP~~qG~~ 151 (275)
T PRK08335 134 KRFKVILTESAPDYEGLA 151 (275)
T ss_pred CceEEEEecCCCchhHHH
Confidence 999999999999999975
No 11
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-31 Score=254.41 Aligned_cols=140 Identities=34% Similarity=0.462 Sum_probs=126.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCccccccc
Q psy6709 68 QFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKD 147 (288)
Q Consensus 68 ~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~ 147 (288)
+.+.+.++|+|.++.++|++.|++||++|+++|+| ++.||||||+|+|||+|||||||+||++|++||.+
T Consensus 115 ~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~~------~~~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i---- 184 (346)
T COG0182 115 KEPKESILQEAEEIAEEDLEANRAIGENGAELLPD------GDTVLTHCNAGALATVGYGTALGVIRSAHEEGKDI---- 184 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCeEEeeecCCceeecCccchHHHHHHHHHCCCee----
Confidence 44556799999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHH-------HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 148 KQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAAD-------SVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNK 220 (288)
Q Consensus 148 ~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~-------~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~ 220 (288)
++|++||||||||||+|||+|.+-+. .+..+++.. +. ++.++-.||+|+.++ ...|
T Consensus 185 ---------~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~---g~----Id~viVGADRI~~nG-dvaN 247 (346)
T COG0182 185 ---------RVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQ---GM----IDAVIVGADRIAANG-DVAN 247 (346)
T ss_pred ---------EEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHh---CC----CcEEEEccceeecCC-cchh
Confidence 67999999999999999999999984 445555543 33 788899999999998 7889
Q ss_pred HHHHHHHHHhhhhC
Q psy6709 221 AIGRNGAQALIDLN 234 (288)
Q Consensus 221 kIG~~ga~~l~~~~ 234 (288)
|||+|+.+++++.+
T Consensus 248 KIGTY~lAvlAk~~ 261 (346)
T COG0182 248 KIGTYQLAVLAKHH 261 (346)
T ss_pred hhhHHHHHHHHHHc
Confidence 99999999998764
No 12
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=99.96 E-value=6.5e-29 Score=232.59 Aligned_cols=155 Identities=30% Similarity=0.438 Sum_probs=139.0
Q ss_pred CHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCcc
Q psy6709 33 NVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNV 112 (288)
Q Consensus 33 ~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~v 112 (288)
+++|++++||+|+|||||+||++|+++|++.+.+.+
T Consensus 1 ~~~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~~~-------------------------------------------- 36 (301)
T TIGR00511 1 DVEETAEKIRSMEIRGAGRIARAAAAALMEQAAKAE-------------------------------------------- 36 (301)
T ss_pred CHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhcc--------------------------------------------
Confidence 579999999999999999999999999998876643
Q ss_pred ccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhh
Q psy6709 113 LTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWA 192 (288)
Q Consensus 113 lThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~ 192 (288)
..+..++...+.+...+|..+|||+++|.|+.++|+..+..
T Consensus 37 -------------------------------------~~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~-- 77 (301)
T TIGR00511 37 -------------------------------------SASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG-- 77 (301)
T ss_pred -------------------------------------cCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc--
Confidence 11234556778999999999999999999999999887632
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCCc
Q psy6709 193 KASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKI 272 (288)
Q Consensus 193 ~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~ 272 (288)
.+.+++++.+++.++.+.+++...+++|+++|+++|.+ +..||||||+ +|++++++.++++||.
T Consensus 78 --~~~~~~k~~l~~~~~~~~~e~~~a~~~I~~~a~~~i~~------g~~ILT~~~S--------~tv~~~l~~a~~~~~~ 141 (301)
T TIGR00511 78 --EDVETLRETVIERADAFINQSDKAQERIGEIGAKRIRD------GDVVMTHCNS--------EAALSVIKTAFEQGKD 141 (301)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCEEEEECCc--------HHHHHHHHHHHHcCCc
Confidence 56788999999999999999999999999999999875 5699999999 8999999999999999
Q ss_pred ceEEeCCCCCCccC
Q psy6709 273 GAAYCTETRPYNQG 286 (288)
Q Consensus 273 ~~~~~~ETrP~~QG 286 (288)
.+|||+||||++||
T Consensus 142 f~V~v~EsrP~~~G 155 (301)
T TIGR00511 142 IEVIATETRPRKQG 155 (301)
T ss_pred EEEEEecCCCcchH
Confidence 99999999999999
No 13
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.96 E-value=5.2e-28 Score=227.13 Aligned_cols=156 Identities=30% Similarity=0.412 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCc
Q psy6709 32 NNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLN 111 (288)
Q Consensus 32 ~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~ 111 (288)
.+++|++++||+|+|||||+||++++++|++.+.+.+
T Consensus 5 ~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~------------------------------------------- 41 (310)
T PRK08535 5 PEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSD------------------------------------------- 41 (310)
T ss_pred hhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcC-------------------------------------------
Confidence 4789999999999999999999999999998877644
Q ss_pred cccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy6709 112 VLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEW 191 (288)
Q Consensus 112 vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~ 191 (288)
..+..++...+.+...+|..+|||+++|.|+.++|+....
T Consensus 42 --------------------------------------~~~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~~~~~-- 81 (310)
T PRK08535 42 --------------------------------------AESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMRYYS-- 81 (310)
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhc--
Confidence 1223456778999999999999999999999999986522
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCC
Q psy6709 192 AKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANK 271 (288)
Q Consensus 192 ~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~ 271 (288)
..+.+++++.+++.++.+.+++...+.+|+.+|.++|.+ +..||||||+ ||++++|+.++++||
T Consensus 82 --~~~~~~~k~~l~e~~~~~~~e~~~~~~~I~~~a~~~i~~------g~~ILT~~~S--------~tv~~~l~~A~~~~k 145 (310)
T PRK08535 82 --GETVEEARESVIERAEEFIESSENAVEKIGEIGAKRIRD------GDVIMTHCNS--------SAALSVIKTAHEQGK 145 (310)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCEEEEeCCc--------HHHHHHHHHHHHCCC
Confidence 256789999999999999999999999999999998865 5699999999 899999999999999
Q ss_pred cceEEeCCCCCCccC
Q psy6709 272 IGAAYCTETRPYNQG 286 (288)
Q Consensus 272 ~~~~~~~ETrP~~QG 286 (288)
..+|||+||||++||
T Consensus 146 ~~~V~v~EsrP~~~G 160 (310)
T PRK08535 146 DIEVIATETRPRNQG 160 (310)
T ss_pred eEEEEEecCCchhhH
Confidence 999999999999999
No 14
>KOG1468|consensus
Probab=99.95 E-value=4.2e-29 Score=233.85 Aligned_cols=143 Identities=38% Similarity=0.527 Sum_probs=127.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
++.++++.++|+++|..+|+.||.+|++.|.+..+++++.+|||||||||+||+|||||||+||++|++|+.-
T Consensus 117 ~~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~kltVlThCNTGSLATagyGTALGVIRsLh~~grLe------- 189 (354)
T KOG1468|consen 117 REKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGKLTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLE------- 189 (354)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCceEEEEeecCCchhhcccchHHHHHHHHHhcCCcc-------
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHH-------HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRA-------ADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIG 223 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A-------~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG 223 (288)
++||+|||||+||+|+||.+|..- .+.|.++++.. .. ++.++..||++...+ ...||||
T Consensus 190 ------hvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~---~~----vdavvvGADrVarNG-DTANKIG 255 (354)
T KOG1468|consen 190 ------HVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKN---HQ----VDAVVVGADRVARNG-DTANKIG 255 (354)
T ss_pred ------eEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHhc---CC----CCEEEEcccceeccC-cchhhhh
Confidence 779999999999999999999875 35666555432 33 567788899999999 6667999
Q ss_pred HHHHHHhhhhC
Q psy6709 224 RNGAQALIDLN 234 (288)
Q Consensus 224 ~~ga~~l~~~~ 234 (288)
+|..+++++..
T Consensus 256 Ty~LAv~aKhh 266 (354)
T KOG1468|consen 256 TYQLAVLAKHH 266 (354)
T ss_pred hhHHHHHHHhc
Confidence 99999998764
No 15
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=99.88 E-value=1e-24 Score=209.60 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
..+++.+..|.++|.+.+.+||+||+++|+| |+ ||||||+|++||++||||+++||++|++||.+
T Consensus 130 ~~l~~~a~~i~~~d~~~~~~Ig~~g~~li~d------g~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~-------- 194 (356)
T PRK08334 130 RLIVEEAQKIADEDVEANLRMGHYGAEVLPE------GN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLK-------- 194 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CC-EEEecCcchhhhcccchHHHHHHHHHHcCCeE--------
Confidence 5588899999999999999999999999996 66 99999999999999999999999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|++|+||++||+|+||++|.+.+.++ ..++++. +. ++.++-.||+|..++ ...+|||+
T Consensus 195 -----~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~---~~----Vd~VivGAd~I~~nG-~v~NKiGT 261 (356)
T PRK08334 195 -----LLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQ---GK----VDAIIVGADRIVANG-DFANKIGT 261 (356)
T ss_pred -----EEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhh---cC----CCEEEECccEEecCC-CEeehhhH
Confidence 6799999999999999999999998443 4444432 12 566778899999888 88899999
Q ss_pred HHHHHhhhhCCCCCCCceeecCCC
Q psy6709 225 NGAQALIDLNPGVSKLNVLTHCNT 248 (288)
Q Consensus 225 ~ga~~l~~~~~~~~~~~vlThcnt 248 (288)
+..+++++.. +..+.--|+.
T Consensus 262 y~lA~~Ak~~----~vPfyV~Ap~ 281 (356)
T PRK08334 262 YTLAVLAKEH----GIPFFTVAPL 281 (356)
T ss_pred HHHHHHHHHh----CCCEEEEccc
Confidence 9999998743 3345544543
No 16
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.86 E-value=4.8e-23 Score=196.85 Aligned_cols=145 Identities=26% Similarity=0.322 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
..+++.+..+.+++.+.+++||++|+++|+| +++||||||+|+++|++||||+++|+.+|++||.+
T Consensus 117 ~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~-------- 182 (339)
T PRK06036 117 DIALREAERIAEEDVARNKLIGKHGAKLLED------GDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEI-------- 182 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCEEEEecCCccccccccchHHHHHHHHHHcCCce--------
Confidence 4588899999999999999999999999986 99999999999999999999999999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|+.|+||++||+|+||++|.+.+.++ ...+++. +. ++.++-.||+|..++ ..+|||+
T Consensus 183 -----~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~---~~----Vd~VivGAd~I~anG--v~NKiGT 248 (339)
T PRK06036 183 -----KVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQ---GM----VDKVIVGADRITRDA--VFNKIGT 248 (339)
T ss_pred -----EEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhcc---CC----CCEEEECccchhhcC--eehhhhH
Confidence 7799999999999999999999997443 4444332 12 456777899999874 7799999
Q ss_pred HHHHHhhhhCCCCCCCceeecCCC
Q psy6709 225 NGAQALIDLNPGVSKLNVLTHCNT 248 (288)
Q Consensus 225 ~ga~~l~~~~~~~~~~~vlThcnt 248 (288)
++.+++++.. +..+.--|++
T Consensus 249 ~~lA~~Ak~~----~vPfyV~ap~ 268 (339)
T PRK06036 249 YTHSVLAKEH----EIPFYVAAPL 268 (339)
T ss_pred HHHHHHHHHh----CCCEEEEeec
Confidence 9999998743 3455555654
No 17
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.85 E-value=5.6e-23 Score=198.00 Aligned_cols=147 Identities=20% Similarity=0.198 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchh-hhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLAT-AEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at-~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
..+++.|+.|.+++++.+.+||++|+++|+| |++||||||+|++|| +|||||+++|+.+|++||.+
T Consensus 136 ~~l~~~A~~i~~ed~~~~~~I~~~g~~~I~d------g~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f------- 202 (363)
T PRK05772 136 ELLKVEAKKIFEEEYDAEIQMGLYGLEKLND------GDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSV------- 202 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCEEEEecCCcchhhccccccHHHHHHHHHHCCCeE-------
Confidence 4588999999999999999999999999997 999999999999999 99999999999999999998
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIG 223 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG 223 (288)
++|+.|+||++||+|+||++|.+.+.++ ..++++. +. ++.++-.||+|..++ ...+|||
T Consensus 203 ------~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~---~~----Vd~VivGAD~I~~NG-~v~NKiG 268 (363)
T PRK05772 203 ------SVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYK---DM----VNNVMVGADRILRDG-HVFNKIG 268 (363)
T ss_pred ------EEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHhh---cC----CCEEEECccEEecCC-CEeehhh
Confidence 7799999999999999999999998443 4444432 11 566777899999988 7889999
Q ss_pred HHHHHHhhhhCCCCCCCceeecCCCC
Q psy6709 224 RNGAQALIDLNPGVSKLNVLTHCNTG 249 (288)
Q Consensus 224 ~~ga~~l~~~~~~~~~~~vlThcntg 249 (288)
++..+++++.. +..+.--|++-
T Consensus 269 Ty~lA~~Ak~~----~vPfyV~ap~~ 290 (363)
T PRK05772 269 TFKEAVIAHEL----GIPFYALAPTS 290 (363)
T ss_pred hHHHHHHHHHh----CCCEEEEcccc
Confidence 99999998753 34455556653
No 18
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=99.84 E-value=7.9e-23 Score=195.58 Aligned_cols=137 Identities=27% Similarity=0.304 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
...+++.+.+|++++.+.+++||++|+++|+| |++||||||+++++|.|||||+++|+.+|++||.+
T Consensus 115 ~~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~------- 181 (344)
T PRK05720 115 KAALEEEAIEIHEEDVEINRAIGEHGLTLIRK------GQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDI------- 181 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCEEEEecCCCcceecchhHHHHHHHHHHHcCCce-------
Confidence 35689999999999999999999999999986 99999999999999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIG 223 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG 223 (288)
++|+.|+||++||+|+||++|.+.+.++ ...+++. .. ++.++-.||+|..++ ...+|+|
T Consensus 182 ------~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~---~~----vd~VivGAd~I~~nG-~v~NkiG 247 (344)
T PRK05720 182 ------HVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQT---GK----IDAVIVGADRIAANG-DVANKIG 247 (344)
T ss_pred ------EEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcc---cC----CCEEEEcccEEecCC-CEeehhh
Confidence 7799999999999999999999998444 3333322 12 566777899999888 8889999
Q ss_pred HHHHHHhhhhC
Q psy6709 224 RNGAQALIDLN 234 (288)
Q Consensus 224 ~~ga~~l~~~~ 234 (288)
++..+++++..
T Consensus 248 T~~lAl~Ak~~ 258 (344)
T PRK05720 248 TYQLAIAAKYH 258 (344)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 19
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=99.83 E-value=3.2e-22 Score=190.69 Aligned_cols=149 Identities=34% Similarity=0.459 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCC----ccccccCCCcchhhhcchhHHHHHHhhhcCcccccc
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKL----NVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIK 146 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~----~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~ 146 (288)
...+++.+.+|++++.+.+++||++|+++|+| |+ +||||||+|++||++||||+++|+.+|++||.+
T Consensus 111 k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~d------g~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~--- 181 (331)
T TIGR00512 111 KEALLAEAERILEEDLEDNRAIGENGAALIKK------GVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLE--- 181 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCceEEeecCCccccccccchHHHHHHHHHHcCCce---
Confidence 45689999999999999999999999999996 88 999999999999999999999999999999987
Q ss_pred cCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 147 DKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDN 219 (288)
Q Consensus 147 ~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n 219 (288)
++|+.|+||++||+|.||++|.+.+.++ ..++++. .. ++.++-.|++|..++ ...
T Consensus 182 ----------~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~---~~----vd~VivGAd~v~~nG-~v~ 243 (331)
T TIGR00512 182 ----------HVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKH---GE----VDAVIVGADRIAANG-DTA 243 (331)
T ss_pred ----------EEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcc---cC----CCEEEEcccEEecCC-CEe
Confidence 7799999999999999999999998444 3334331 12 556777899999888 778
Q ss_pred HHHHHHHHHHhhhhCCCCCCCceeecCCCCc
Q psy6709 220 KAIGRNGAQALIDLNPGVSKLNVLTHCNTGS 250 (288)
Q Consensus 220 ~kIG~~ga~~l~~~~~~~~~~~vlThcntg~ 250 (288)
+|+|++..+++++.. +..+.--|++-.
T Consensus 244 nkiGT~~lA~~Ak~~----~vPfyV~a~~~k 270 (331)
T TIGR00512 244 NKIGTYQLAVLAKHH----GVPFYVAAPTST 270 (331)
T ss_pred ehhhHHHHHHHHHHh----CCCEEEeccccc
Confidence 999999999998753 345555566443
No 20
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.82 E-value=5.5e-22 Score=189.06 Aligned_cols=143 Identities=23% Similarity=0.282 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCch
Q psy6709 75 IQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDND 154 (288)
Q Consensus 75 ~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~ 154 (288)
.+.|.++.+++++.+++||++|+++|.| +++||||||+++++|++||||+++|+.++++||.+
T Consensus 109 ~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f----------- 171 (329)
T PRK06371 109 MNAARRYAMEIIGRSKKIGEYGNELIKN------GARILTHCNAGALAVVDWGTALAPIRIAHRNGKNI----------- 171 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCEEEEeCCCCcceeccchhHHHHHHHHHHcCCee-----------
Confidence 6788899999999999999999999986 99999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 155 SLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGA 227 (288)
Q Consensus 155 ~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga 227 (288)
++|+.|+||++||+|+||++|.+.+.++ ..++++. .. ++.++-.||+|..++ ...+|||++..
T Consensus 172 --~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~---~~----Vd~VivGAd~I~aNG-~v~NKiGT~~l 241 (329)
T PRK06371 172 --FVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRK---KE----IDLVIVGADRIASNG-DFANKIGTYEK 241 (329)
T ss_pred --EEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhh---cC----CCEEEECccEEecCC-CEeehhhHHHH
Confidence 7799999999999999999999987444 3333332 12 456777899999888 78899999999
Q ss_pred HHhhhhCCCCCCCceeecCCC
Q psy6709 228 QALIDLNPGVSKLNVLTHCNT 248 (288)
Q Consensus 228 ~~l~~~~~~~~~~~vlThcnt 248 (288)
+++++.. +..+.--|++
T Consensus 242 Al~Ak~~----~VPfyV~a~~ 258 (329)
T PRK06371 242 AVLAKVN----GIPFYVAAPG 258 (329)
T ss_pred HHHHHHc----CCCEEEeccc
Confidence 9998753 3455555653
No 21
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=99.75 E-value=5.5e-20 Score=173.08 Aligned_cols=136 Identities=29% Similarity=0.373 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
..+++.+.+|++++.+.+.+|+++|+++|.| +++||||||||++||+||||++++|+.++++||.+
T Consensus 88 ~~l~~~~~~~~~e~~~~~~~Ia~~a~~~I~~------g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~-------- 153 (303)
T TIGR00524 88 ESLLREAIEIIEEDLETNRKIGENGAKLIKD------GDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRI-------- 153 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCEEEEecCCccccccCcchHHHHHHHHHHcCCce--------
Confidence 3588999999999999999999999999986 89999999999999999999999999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|+.|+||++||+|.||++|.+.+.++ ...+++. .. ++.++-.|+.+..++ ...+|+|+
T Consensus 154 -----~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~---~~----vd~VlvGAd~v~~nG-~v~nk~GT 220 (303)
T TIGR00524 154 -----RVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQK---GE----IDAVIVGADRIARNG-DVANKIGT 220 (303)
T ss_pred -----EEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccc---cC----CCEEEEcccEEecCC-CEeEhhhH
Confidence 7799999999999999999999988443 3333331 12 566777899999888 88899999
Q ss_pred HHHHHhhhhC
Q psy6709 225 NGAQALIDLN 234 (288)
Q Consensus 225 ~ga~~l~~~~ 234 (288)
+..+++++.+
T Consensus 221 ~~lA~~Ak~~ 230 (303)
T TIGR00524 221 YQLAVLAKEF 230 (303)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 22
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=99.73 E-value=6.1e-17 Score=147.65 Aligned_cols=121 Identities=21% Similarity=0.310 Sum_probs=102.3
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALI 231 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~ 231 (288)
+..++...+.+...+|..+|||.++|.++.+++...+.......+.++.++.+.+.++.+.++.....++|+.++.++|.
T Consensus 27 ~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~~~l~~~i~~~~~e~~~~~~~I~~~~~~~I~ 106 (282)
T PF01008_consen 27 TVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAKQSLLEAIDEFLDEIEQAREKIADHASELIN 106 (282)
T ss_dssp SHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 45667888999999999999999999999999988554333446788899999999999999988999999999998886
Q ss_pred hhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccC
Q psy6709 232 DLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQG 286 (288)
Q Consensus 232 ~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QG 286 (288)
+ +.+|||||++ .|.+.+++.++++||..+|||.|+||++||
T Consensus 107 ~------~~~ILT~~~S--------~~v~~~l~~a~~~~~~~~V~v~es~P~~eG 147 (282)
T PF01008_consen 107 D------GDTILTHGYS--------STVERFLLSAKKKGKKFRVIVLESRPYNEG 147 (282)
T ss_dssp T------TEEEEEES----------SHHHHHHHHHHHTTEEEEEEEE--TTTTHH
T ss_pred C------CeEEEEeCCc--------hHHHHHHHHHHHcCCeEEEEEccCCcchhh
Confidence 4 5799999999 789999999999999999999999999998
No 23
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.6e-15 Score=143.59 Aligned_cols=155 Identities=28% Similarity=0.354 Sum_probs=131.0
Q ss_pred CHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCcc
Q psy6709 33 NVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNV 112 (288)
Q Consensus 33 ~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~v 112 (288)
.+.+..+-||+|++||+-.|+++++-.+.-.+.+.+
T Consensus 5 ~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~-------------------------------------------- 40 (301)
T COG1184 5 EVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQ-------------------------------------------- 40 (301)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhccc--------------------------------------------
Confidence 467889999999999999999888766654444433
Q ss_pred ccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhh
Q psy6709 113 LTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWA 192 (288)
Q Consensus 113 lThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~ 192 (288)
.++.++|...+.+....|..+|||++.|.++.+.+....
T Consensus 41 -------------------------------------~~~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~~~---- 79 (301)
T COG1184 41 -------------------------------------APTVEELIDAIRELSETLVKARPTAVSLGNLIRFVLRDS---- 79 (301)
T ss_pred -------------------------------------cccHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHhcc----
Confidence 223456778888999999999999999999999987621
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCCc
Q psy6709 193 KASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKI 272 (288)
Q Consensus 193 ~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~ 272 (288)
...+..+..+.+++.++.+...-....++|+..|++.+.| +..||||||. -|++.+|+++...||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~d------g~~IlTh~~S--------~~v~~~l~~A~~~~k~ 145 (301)
T COG1184 80 SGGDKENRRQSLIKAAQEFIDRVEKAKERIAEIGAERIHD------GDVILTHSFS--------KTVLEVLKTAADRGKR 145 (301)
T ss_pred cccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC------CCEEEEecCc--------HHHHHHHHHhhhcCCc
Confidence 1245667778888889988888888999999999999976 5799999999 7899999999999999
Q ss_pred ceEEeCCCCCCccC
Q psy6709 273 GAAYCTETRPYNQG 286 (288)
Q Consensus 273 ~~~~~~ETrP~~QG 286 (288)
+.||++|+||.+||
T Consensus 146 ~~V~VtESRP~~eG 159 (301)
T COG1184 146 FKVIVTESRPRGEG 159 (301)
T ss_pred eEEEEEcCCCcchH
Confidence 99999999999998
No 24
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=99.61 E-value=3.1e-17 Score=153.27 Aligned_cols=126 Identities=12% Similarity=0.040 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
...+.+.+.+|.+++.+.+.+||++|+++|+| +++||||||| ||++++|+.++++||.+
T Consensus 78 ~~~~~~~a~~~~~~~~~~~~~I~~~a~~~I~~------g~~ILTh~~S--------~tv~~~l~~A~~~gk~~------- 136 (275)
T PRK08335 78 PELVKSRAEEFLRLMEEAKREIGNIGSELIDD------GDVIITHSFS--------SAVLEILKTAKRKGKRF------- 136 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCEEEEECCc--------HHHHHHHHHHHHcCCce-------
Confidence 45689999999999999999999999999986 9999999999 48999999999999987
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIG 223 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG 223 (288)
++|+.|+||++||+|+ |++|.+.+.++ ...++.. ++.++-.||+|..++ ...+|||
T Consensus 137 ------~V~v~EsrP~~qG~~l-a~eL~~~GI~vtlI~Dsa~~~~m~~---------vd~VivGAD~I~~nG-~v~NKiG 199 (275)
T PRK08335 137 ------KVILTESAPDYEGLAL-ANELEFLGIEFEVITDAQLGLFAKE---------ATLALVGADNVTRDG-YVVNKAG 199 (275)
T ss_pred ------EEEEecCCCchhHHHH-HHHHHHCCCCEEEEeccHHHHHHHh---------CCEEEECccEEecCC-CEeehhh
Confidence 6799999999999999 99999998444 3333321 566777899999888 7889999
Q ss_pred HHHHHHhhhhC
Q psy6709 224 RNGAQALIDLN 234 (288)
Q Consensus 224 ~~ga~~l~~~~ 234 (288)
++..+++++..
T Consensus 200 T~~lA~~Ak~~ 210 (275)
T PRK08335 200 TYLLALACHDN 210 (275)
T ss_pred HHHHHHHHHHc
Confidence 99999998753
No 25
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.45 E-value=5.6e-15 Score=139.25 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
...+++.+.+|++++.+.+.+|+++|+++|.| |++|||||||+ |++++|+.++++||.+
T Consensus 89 k~~l~e~~~~~~~e~~~~~~~I~~~a~~~i~~------g~~ILT~~~S~--------tv~~~l~~A~~~~k~~------- 147 (310)
T PRK08535 89 RESVIERAEEFIESSENAVEKIGEIGAKRIRD------GDVIMTHCNSS--------AALSVIKTAHEQGKDI------- 147 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCEEEEeCCcH--------HHHHHHHHHHHCCCeE-------
Confidence 35689999999999999999999999999986 99999999995 8999999999999987
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIG 223 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG 223 (288)
++|+.|+||++|| |.||++|.+.+.++ ...+++. ++.++-.|++|..++ ...+|+|
T Consensus 148 ------~V~v~EsrP~~~G-~~~a~~L~~~GI~vtlI~Dsav~~~m~~---------vd~VivGAd~v~~nG-~v~nkiG 210 (310)
T PRK08535 148 ------EVIATETRPRNQG-HITAKELAEYGIPVTLIVDSAVRYFMKD---------VDKVVVGADAITANG-AVINKIG 210 (310)
T ss_pred ------EEEEecCCchhhH-HHHHHHHHHCCCCEEEEehhHHHHHHHh---------CCEEEECccEEecCC-CEEeHHh
Confidence 6799999999999 99999999987444 3333322 456777889999888 7889999
Q ss_pred HHHHHHhhhhC
Q psy6709 224 RNGAQALIDLN 234 (288)
Q Consensus 224 ~~ga~~l~~~~ 234 (288)
++..+++++.+
T Consensus 211 T~~~A~~Ak~~ 221 (310)
T PRK08535 211 TSQIALAAHEA 221 (310)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 26
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=99.44 E-value=6e-15 Score=138.67 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
+.+++.+.+|++++.+++.+|+++|+++|.| |++|||||||+ |++++|+.++++||.+
T Consensus 85 ~~l~~~~~~~~~e~~~a~~~I~~~a~~~i~~------g~~ILT~~~S~--------tv~~~l~~a~~~~~~f-------- 142 (301)
T TIGR00511 85 ETVIERADAFINQSDKAQERIGEIGAKRIRD------GDVVMTHCNSE--------AALSVIKTAFEQGKDI-------- 142 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCEEEEECCcH--------HHHHHHHHHHHcCCcE--------
Confidence 4689999999999999999999999999996 99999999995 7999999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|+.|+||++|| |.||++|.+.+.++ ...+++. ++.++-.|+++..++ ...+|+|+
T Consensus 143 -----~V~v~EsrP~~~G-~~~a~~L~~~gI~vtlI~Dsa~~~~m~~---------vd~VivGad~v~~nG-~v~nkiGT 206 (301)
T TIGR00511 143 -----EVIATETRPRKQG-HITAKELRDYGIPVTLIVDSAVRYFMKE---------VDHVVVGADAITANG-ALINKIGT 206 (301)
T ss_pred -----EEEEecCCCcchH-HHHHHHHHHCCCCEEEEehhHHHHHHHh---------CCEEEECccEEecCC-CEEEHHhH
Confidence 7799999999999 99999999987443 3333322 455677789999888 78899999
Q ss_pred HHHHHhhhhC
Q psy6709 225 NGAQALIDLN 234 (288)
Q Consensus 225 ~ga~~l~~~~ 234 (288)
+..+++++.+
T Consensus 207 ~~lA~~Ak~~ 216 (301)
T TIGR00511 207 SQLALAAREA 216 (301)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 27
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.3e-11 Score=115.49 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
...+...+..|+++-..+...|++.|+++|.| +++|||||||. |++.+|+.++..+|.+
T Consensus 88 ~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~d------g~~IlTh~~S~--------~v~~~l~~A~~~~k~~------- 146 (301)
T COG1184 88 RQSLIKAAQEFIDRVEKAKERIAEIGAERIHD------GDVILTHSFSK--------TVLEVLKTAADRGKRF------- 146 (301)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC------CCEEEEecCcH--------HHHHHHHHhhhcCCce-------
Confidence 34588889999999999999999999999997 99999999999 5899999999999976
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHH-------HHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVK-------SSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIG 223 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~-------~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG 223 (288)
++|++|+||.+|| |.||..|.+.+.++. ..+.+. ++.++-.||.|..++ ...+|+|
T Consensus 147 ------~V~VtESRP~~eG-~~~ak~L~~~gI~~~~I~Dsa~~~~~~~---------vd~VivGad~I~~nG-~lvnkiG 209 (301)
T COG1184 147 ------KVIVTESRPRGEG-RIMAKELRQSGIPVTVIVDSAVGAFMSR---------VDKVLVGADAILANG-ALVNKIG 209 (301)
T ss_pred ------EEEEEcCCCcchH-HHHHHHHHHcCCceEEEechHHHHHHHh---------CCEEEECccceecCC-cEEeccc
Confidence 7899999999999 899999999995542 222221 345667788899888 7889999
Q ss_pred HHHHHHhhhh
Q psy6709 224 RNGAQALIDL 233 (288)
Q Consensus 224 ~~ga~~l~~~ 233 (288)
++..++.++.
T Consensus 210 T~~lA~~A~e 219 (301)
T COG1184 210 TSPLALAARE 219 (301)
T ss_pred hHHHHHHHHH
Confidence 9999998764
No 28
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=98.81 E-value=5.9e-11 Score=108.46 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
..+++.+.+|+++..+...+|++++.++|.| +++|||||++. ++..++..++++|+.+
T Consensus 77 ~~l~~~i~~~~~e~~~~~~~I~~~~~~~I~~------~~~ILT~~~S~--------~v~~~l~~a~~~~~~~-------- 134 (282)
T PF01008_consen 77 QSLLEAIDEFLDEIEQAREKIADHASELIND------GDTILTHGYSS--------TVERFLLSAKKKGKKF-------- 134 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-T------TEEEEEES--S--------HHHHHHHHHHHTTEEE--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhccC------CeEEEEeCCch--------HHHHHHHHHHHcCCeE--------
Confidence 4588999999999999999999999999986 99999999999 4788999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++++.|+||+++| |.+|..|.+.+.++ ...+++. + ++.++-.|+.|..++ ...+++|+
T Consensus 135 -----~V~v~es~P~~eG-~~~a~~L~~~gi~v~~i~d~~~~~~m~~----~----vd~VliGad~v~~nG-~v~nk~Gt 199 (282)
T PF01008_consen 135 -----RVIVLESRPYNEG-RLMAKELAEAGIPVTLIPDSAVGYVMPR----D----VDKVLIGADAVLANG-GVVNKVGT 199 (282)
T ss_dssp -----EEEEE--TTTTHH-HTHHHHHHHTT-EEEEE-GGGHHHHHHC----T----ESEEEEE-SEEETTS--EEEETTH
T ss_pred -----EEEEccCCcchhh-hhHHHHhhhcceeEEEEechHHHHHHHH----h----CCeeEEeeeEEecCC-CEeehhhH
Confidence 6799999999999 99999999887443 1122111 0 233455678888888 78889999
Q ss_pred HHHHHhhhhC
Q psy6709 225 NGAQALIDLN 234 (288)
Q Consensus 225 ~ga~~l~~~~ 234 (288)
+..+++++.+
T Consensus 200 ~~~a~~Ak~~ 209 (282)
T PF01008_consen 200 LQLALAAKEF 209 (282)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 29
>KOG1466|consensus
Probab=98.44 E-value=9.1e-06 Score=77.05 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=103.2
Q ss_pred CCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 150 FPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEW--AKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGA 227 (288)
Q Consensus 150 ~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~--~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga 227 (288)
...-.+++..++++...|.+.=++-..|.-+++-....+... ..-++-++.++.+++.++.+.+.-...-++|...+-
T Consensus 46 a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~erg~~F~~~~~~sR~~IA~l~~ 125 (313)
T KOG1466|consen 46 ATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLLERGELFIERARKSRQKIAMLAQ 125 (313)
T ss_pred cchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344578899999999999999999999998887665544322 223567888999999999999888777789999999
Q ss_pred HHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccC
Q psy6709 228 QALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQG 286 (288)
Q Consensus 228 ~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QG 286 (288)
..|.| +.+||||-.. -..|.++..+++++|..+|||||.||-.+|
T Consensus 126 ~Fi~d------g~~ILtHg~S--------RvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG 170 (313)
T KOG1466|consen 126 DFITD------GCTILTHGYS--------RVVLEVLLTAAQNKKRFRVYVTESRPDGSG 170 (313)
T ss_pred hHhhC------CCEEEEcchh--------HHHHHHHHHHHhcCceEEEEEecCCCCCch
Confidence 99887 6899999877 457889999999999999999999999988
No 30
>KOG1466|consensus
Probab=97.55 E-value=4.9e-06 Score=78.83 Aligned_cols=124 Identities=18% Similarity=0.138 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
.-+++.++.|+++...+-..|+..+-..|.| |.+||||.++-- .+.++..+++.+|.+
T Consensus 100 ~~l~erg~~F~~~~~~sR~~IA~l~~~Fi~d------g~~ILtHg~SRv--------Vl~~L~~Aa~~~~~F-------- 157 (313)
T KOG1466|consen 100 QHLLERGELFIERARKSRQKIAMLAQDFITD------GCTILTHGYSRV--------VLEVLLTAAQNKKRF-------- 157 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhC------CCEEEEcchhHH--------HHHHHHHHHhcCceE--------
Confidence 3478899999999999999999999999987 999999999884 688999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|++|.+|-.+| -.-+..|..++.++ ..+.++. ++.++-.|+.+.+.+ -+.|+||+
T Consensus 158 -----~V~vTEsrPd~sG-~lm~~~L~~~~IPvtlvlDSaVgyvMe~---------vD~VlVGAEGVvEsG-GIIN~iGT 221 (313)
T KOG1466|consen 158 -----RVYVTESRPDGSG-KLMAKELKKLGIPVTLVLDSAVGYVMER---------VDLVLVGAEGVVESG-GIINKIGT 221 (313)
T ss_pred -----EEEEecCCCCCch-hHHHHHHHhcCCCeEEEehhhHHHHHhh---------ccEEEEccceeeecC-ceeeeccc
Confidence 7799999999999 57777788777554 2333332 455667788888777 77889999
Q ss_pred HHHHHhhhh
Q psy6709 225 NGAQALIDL 233 (288)
Q Consensus 225 ~ga~~l~~~ 233 (288)
+...++++.
T Consensus 222 yq~~v~Ak~ 230 (313)
T KOG1466|consen 222 YQVAVCAKS 230 (313)
T ss_pred chhhhhHHh
Confidence 999988763
No 31
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=97.43 E-value=9.8e-06 Score=75.72 Aligned_cols=114 Identities=14% Similarity=-0.030 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHH
Q psy6709 79 ESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEK 158 (288)
Q Consensus 79 ~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (288)
.++.+.-....+.+.+++++.|. +++|||+.++..+ -.++.. ..+.. .+
T Consensus 64 ~~~~~~~~~~~~~~~~~A~~~i~-------~dvILT~s~S~~v--------~~~l~~---~~~~~-------------~V 112 (253)
T PRK06372 64 KNLKLGIEKHEKMAIEHAKPLFN-------DSVIGTISSSQVL--------KAFISS---SEKIK-------------SV 112 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-------CCEEEEeCCcHHH--------HHHHHh---cCCCC-------------EE
Confidence 34445555677788889999883 6899999965531 223322 11211 56
Q ss_pred HHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6709 159 YVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALI 231 (288)
Q Consensus 159 ~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~ 231 (288)
|+.|+||++|| |.||..|.+.+.++ ...++.. ++.++-.|+++..++ ...+|+|++..++++
T Consensus 113 ~v~ESrP~~eG-~~~a~~L~~~GI~vtli~Dsa~~~~m~~---------vd~VlvGAd~V~~nG-~v~nkvGT~~~Al~A 181 (253)
T PRK06372 113 YILESRPMLEG-IDMAKLLVKSGIDVVLLTDASMCEAVLN---------VDAVIVGSDSVLYDG-GLIHKNGTFPLALCA 181 (253)
T ss_pred EEecCCCchHH-HHHHHHHHHCCCCEEEEehhHHHHHHHh---------CCEEEECccEEecCC-CEeehhhHHHHHHHH
Confidence 89999999999 89999999987444 2222211 455666788888888 888999999999988
Q ss_pred hhC
Q psy6709 232 DLN 234 (288)
Q Consensus 232 ~~~ 234 (288)
+..
T Consensus 182 ~~~ 184 (253)
T PRK06372 182 RYL 184 (253)
T ss_pred HHc
Confidence 753
No 32
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=97.17 E-value=0.0028 Score=59.44 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCce
Q psy6709 163 KLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNV 242 (288)
Q Consensus 163 trpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~v 242 (288)
....|+.+||--.-|.|..+++.+-- ..+++.+...+. .++ +.+.+++...|. +..|
T Consensus 34 ~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~~~~~~~~~~-~~~----------~~~~~~A~~~i~-------~dvI 90 (253)
T PRK06372 34 IIKDLKNYFFGMGLVRNVCDSIISGP-----NLRPKNLKLGIE-KHE----------KMAIEHAKPLFN-------DSVI 90 (253)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHccC-----cCCHHHHHHHHH-HHH----------HHHHHHHHhhcC-------CCEE
Confidence 66677778999888998888776321 134444444332 222 234445555552 2589
Q ss_pred eecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCC
Q psy6709 243 LTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGA 287 (288)
Q Consensus 243 lThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGa 287 (288)
|||-+. +.+- +-+....+..+|||+||||++||.
T Consensus 91 LT~s~S---------~~v~--~~l~~~~~~~~V~v~ESrP~~eG~ 124 (253)
T PRK06372 91 GTISSS---------QVLK--AFISSSEKIKSVYILESRPMLEGI 124 (253)
T ss_pred EEeCCc---------HHHH--HHHHhcCCCCEEEEecCCCchHHH
Confidence 998754 2222 222234455799999999999993
No 33
>KOG1465|consensus
Probab=96.90 E-value=0.054 Score=52.84 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhh-----c----C-------------------------CCHHH
Q psy6709 154 DSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWA-----K----A-------------------------SPVNT 199 (288)
Q Consensus 154 ~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~-----~----~-------------------------~~~~~ 199 (288)
+++.+-+......|++|-||.....+.++|+.+.+.+.. . . .+..+
T Consensus 50 n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliReE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~ 129 (353)
T KOG1465|consen 50 NDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIREEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKK 129 (353)
T ss_pred HHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHH
Confidence 355667777777888999999888888888866553321 0 0 01224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCC
Q psy6709 200 VKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTE 279 (288)
Q Consensus 200 ~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~E 279 (288)
++..+++...++..|=......|.....++|-+ ..-||||--. -|.+..++.+.+.|+..+|++.|
T Consensus 130 lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehihs------nEviLT~g~S--------rTV~~FL~~A~kk~Rkf~viVaE 195 (353)
T KOG1465|consen 130 LRKDLIEGIKELITEIEGSRENIAVQAIEHIHS------NEVILTLGSS--------RTVENFLKHAAKKGRKFRVIVAE 195 (353)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhcc------CceEEecCcc--------HHHHHHHHHHHhccCceEEEEee
Confidence 777788888888877767777888777777753 4589999855 78999999999999999999999
Q ss_pred CCCCccC
Q psy6709 280 TRPYNQG 286 (288)
Q Consensus 280 TrP~~QG 286 (288)
--|.+||
T Consensus 196 ~~p~~qg 202 (353)
T KOG1465|consen 196 GAPNNQG 202 (353)
T ss_pred cCCcccc
Confidence 9999998
No 34
>KOG1467|consensus
Probab=94.88 E-value=0.49 Score=48.78 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q psy6709 154 DSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISD-NKAIGRNGAQALID 232 (288)
Q Consensus 154 ~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~-n~kIG~~ga~~l~~ 232 (288)
-++..++.--..+|-..||-.+.|.+|.+-++..+.......+-.+-++.|....++.+++-+-. -..|..+...-|.|
T Consensus 280 rdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~d 359 (556)
T KOG1467|consen 280 RDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQD 359 (556)
T ss_pred hhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777778889999999999999999888777554222333455666777777776665533 35666666666654
Q ss_pred hCCCCCCCceeecCCCCcccccccccHH-HHHHHHHHCCCcceEEeCCCCCCccCC
Q psy6709 233 LNPGVSKLNVLTHCNTGSLATAEYGTAL-GVIRSLHGANKIGAAYCTETRPYNQGA 287 (288)
Q Consensus 233 ~~~~~~~~~vlThcntg~lAt~~~gtal-gvi~~~~~~~~~~~~~~~ETrP~~QGa 287 (288)
+..|||--.+ +.+ -|+-.+|+.||.++|.+-..||.+.|-
T Consensus 360 ------gdviltyg~s---------~vV~~ill~A~~~~k~frVvVVDSRP~~EG~ 400 (556)
T KOG1467|consen 360 ------GDVLLTYGSS---------SVVNMILLEAKELGKKFRVVVVDSRPNLEGR 400 (556)
T ss_pred ------CCEEEEecch---------HHHHHHHHHHHHhCcceEEEEEeCCCCcchH
Confidence 5678875333 344 488889999999999999999999884
No 35
>KOG1467|consensus
Probab=91.23 E-value=0.11 Score=53.46 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=109.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 73 ELIQLIESMLE-KDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 73 ~~~~~a~~~~~-~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
++..++.+|++ +-.-+.+.|-.|..+-|.| +++|||.-++.- .-.++-++|+.+|.+
T Consensus 329 ~L~~~I~~~i~eki~~A~qaI~q~a~~KI~d------gdviltyg~s~v--------V~~ill~A~~~~k~f-------- 386 (556)
T KOG1467|consen 329 ELQSDIDRFIAEKIILADQAISQHAVTKIQD------GDVLLTYGSSSV--------VNMILLEAKELGKKF-------- 386 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCEEEEecchHH--------HHHHHHHHHHhCcce--------
Confidence 36666666663 4456778889999999987 999999988873 457888899999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++.+-..||.+.| |-+...|.+.|..+ .++++.. ++.++-.|..|+..+ ..--+.|+
T Consensus 387 -----rVvVVDSRP~~EG-~~~lr~Lv~~GinctYv~I~a~syim~e---------vtkvfLGahailsNG-~vysR~GT 450 (556)
T KOG1467|consen 387 -----RVVVVDSRPNLEG-RKLLRRLVDRGINCTYVLINAASYIMLE---------VTKVFLGAHAILSNG-AVYSRVGT 450 (556)
T ss_pred -----EEEEEeCCCCcch-HHHHHHHHHcCCCeEEEEehhHHHHHHh---------cceeeechhhhhcCc-chhhhcch
Confidence 6778889999999 77888888877554 2223211 344566778888888 67778888
Q ss_pred HHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCC
Q psy6709 225 NGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRP 282 (288)
Q Consensus 225 ~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP 282 (288)
...++.++. ..+.||--|-+ +..|++.....+-..|--|
T Consensus 451 a~valvAna----~nVPVlVCCE~---------------yKF~eRvQlDsi~~NEL~d 489 (556)
T KOG1467|consen 451 ACVALVANA----FNVPVLVCCEA---------------YKFHERVQLDSIVSNELGD 489 (556)
T ss_pred HHHHHHhcc----cCCCEEEEech---------------hhhhhhhhhhhhhhcccCC
Confidence 888887753 35679988877 3455655555544444433
No 36
>KOG1465|consensus
Probab=82.55 E-value=0.82 Score=44.87 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
+..+++-+.+++.+-......|+.-.-++|-+ +..||||-.+- |...++..+.++|+..
T Consensus 131 r~~~i~~I~eli~Eie~~~E~Ia~Qa~ehihs------nEviLT~g~Sr--------TV~~FL~~A~kk~Rkf------- 189 (353)
T KOG1465|consen 131 RKDLIEGIKELITEIEGSRENIAVQAIEHIHS------NEVILTLGSSR--------TVENFLKHAAKKGRKF------- 189 (353)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHhcc------CceEEecCccH--------HHHHHHHHHHhccCce-------
Confidence 34577788888888889999999999999975 99999999665 6789999999888765
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADS 183 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~ 183 (288)
.+++.|-.|..|| ..-|.+|..++..
T Consensus 190 ------~viVaE~~p~~qg-H~~Ak~la~~gie 215 (353)
T KOG1465|consen 190 ------RVIVAEGAPNNQG-HELAKPLAQAGIE 215 (353)
T ss_pred ------EEEEeecCCcccc-hHhhHHHHHcCCe
Confidence 6789999999998 7888888866633
No 37
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=49.51 E-value=7.5 Score=33.97 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=23.8
Q ss_pred CCceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCC
Q psy6709 239 KLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTE 279 (288)
Q Consensus 239 ~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~E 279 (288)
...||=||+.|+-=| |+..|.+|.+ +|........|
T Consensus 91 n~PvLiHC~~G~~rT---G~vvg~lRk~--Q~W~~~~i~~E 126 (164)
T PF03162_consen 91 NYPVLIHCNHGKDRT---GLVVGCLRKL--QGWSLSSIFDE 126 (164)
T ss_dssp G-SEEEE-SSSSSHH---HHHHHHHHHH--TTB-HHHHHHH
T ss_pred CCCEEEEeCCCCcch---hhHHHHHHHH--cCCCHHHHHHH
Confidence 357999999998866 8999999965 45444333333
No 38
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=38.54 E-value=1.4e+02 Score=26.50 Aligned_cols=60 Identities=23% Similarity=0.188 Sum_probs=34.8
Q ss_pred HHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhC
Q psy6709 91 AIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSA 170 (288)
Q Consensus 91 ~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgA 170 (288)
..||+||+.|+. |-.+++........|.+...+-++= ..|+.+..+.+.+
T Consensus 9 HAGE~gA~~IY~----------------gQ~~~~~~~~~~~~l~~~~~~E~~H-------------l~~f~~~i~~~~~- 58 (165)
T cd01042 9 HAGEVGAVRIYR----------------GQLAVARDPAVRPLIKEMLDEEKDH-------------LAWFEELLPELGV- 58 (165)
T ss_pred ccchHHHHHHHH----------------HHHHHhCCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHcCC-
Confidence 469999999986 3333333333344444443332221 3567777766544
Q ss_pred CCcHHHHHHH
Q psy6709 171 RPTAVNMKRA 180 (288)
Q Consensus 171 RPTAvnL~~A 180 (288)
|||.-+=.|-
T Consensus 59 rps~l~PlW~ 68 (165)
T cd01042 59 RPSLLLPLWY 68 (165)
T ss_pred CCchHHHHHH
Confidence 9999885553
No 39
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=38.42 E-value=97 Score=24.58 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=10.3
Q ss_pred CCccccccCCCc
Q psy6709 109 KLNVLTHCNTGS 120 (288)
Q Consensus 109 ~~~vlThCnt~~ 120 (288)
+..|+-||..|-
T Consensus 81 ~~~vlVHC~~G~ 92 (139)
T cd00127 81 GGKVLVHCLAGV 92 (139)
T ss_pred CCcEEEECCCCC
Confidence 678999999885
No 40
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=32.80 E-value=1.3e+02 Score=24.12 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=10.6
Q ss_pred CCccccccCCCc
Q psy6709 109 KLNVLTHCNTGS 120 (288)
Q Consensus 109 ~~~vlThCnt~~ 120 (288)
+..|+=||.+|-
T Consensus 78 ~~~VlVHC~~G~ 89 (138)
T smart00195 78 GGKVLVHCQAGV 89 (138)
T ss_pred CCeEEEECCCCC
Confidence 778999999984
No 41
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=31.78 E-value=2.1e+02 Score=21.05 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.1
Q ss_pred CCccccccCCCcch
Q psy6709 109 KLNVLTHCNTGSLA 122 (288)
Q Consensus 109 ~~~vlThCnt~~~a 122 (288)
+..|+=||..|.-=
T Consensus 39 ~~pvlVHC~~G~gR 52 (105)
T smart00404 39 SGPVVVHCSAGVGR 52 (105)
T ss_pred CCCEEEEeCCCCCh
Confidence 67999999988543
No 42
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=31.78 E-value=2.1e+02 Score=21.05 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.1
Q ss_pred CCccccccCCCcch
Q psy6709 109 KLNVLTHCNTGSLA 122 (288)
Q Consensus 109 ~~~vlThCnt~~~a 122 (288)
+..|+=||..|.-=
T Consensus 39 ~~pvlVHC~~G~gR 52 (105)
T smart00012 39 SGPVVVHCSAGVGR 52 (105)
T ss_pred CCCEEEEeCCCCCh
Confidence 67999999988543
No 43
>PF08588 DUF1769: Protein of unknown function (DUF1769); InterPro: IPR013897 This entry is found in fungal proteins with unknown function.
Probab=31.68 E-value=27 Score=26.32 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHCCCcceEEeCCCCCCccC
Q psy6709 256 YGTALGVIRSLHGANKIGAAYCTETRPYNQG 286 (288)
Q Consensus 256 ~gtalgvi~~~~~~~~~~~~~~~ETrP~~QG 286 (288)
+++||-+++....-+-...+||++ ||+-|
T Consensus 22 ~~~alk~~~w~idP~l~~D~y~d~--Pylys 50 (56)
T PF08588_consen 22 FNAALKFFKWFIDPGLEGDLYADK--PYLYS 50 (56)
T ss_pred HHHHHHHHHHHhCCCcccccCCCC--Ceeec
Confidence 588999999899999999999999 99855
No 44
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=29.68 E-value=1e+02 Score=24.53 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=26.6
Q ss_pred CCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcH
Q psy6709 108 SKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTA 174 (288)
Q Consensus 108 ~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTA 174 (288)
.+.+|+-||..|--= ..++.+.+.++..+.. +.++..+++..||..
T Consensus 72 ~~~~VlVHC~~G~~R----S~~v~~ayLm~~~~~~-----------------~~~A~~~v~~~rp~~ 117 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSR----SGAVAAAYLMKKNGMS-----------------LEEAIEYVRSRRPQI 117 (133)
T ss_dssp TTSEEEEEESSSSSH----HHHHHHHHHHHHHTSS-----------------HHHHHHHHHHHSTTS
T ss_pred ccceeEEEeCCCccc----chHHHHHHHHHHcCCC-----------------HHHHHHHHHHHCCCC
Confidence 388999999988422 1233333334545554 345566666666654
No 45
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=25.61 E-value=99 Score=26.99 Aligned_cols=30 Identities=37% Similarity=0.583 Sum_probs=20.4
Q ss_pred CCCccccccCCCcchhhhcchhHHHHHHhhhcCcc
Q psy6709 108 SKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKI 142 (288)
Q Consensus 108 ~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~ 142 (288)
.+-.||=||+.|.--| |+..|++|.+ ||-.
T Consensus 90 ~n~PvLiHC~~G~~rT---G~vvg~lRk~--Q~W~ 119 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRT---GLVVGCLRKL--QGWS 119 (164)
T ss_dssp GG-SEEEE-SSSSSHH---HHHHHHHHHH--TTB-
T ss_pred CCCCEEEEeCCCCcch---hhHHHHHHHH--cCCC
Confidence 4678999999998776 7888888843 4443
No 46
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=24.81 E-value=3.6e+02 Score=23.39 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHH
Q psy6709 108 SKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVN 176 (288)
Q Consensus 108 ~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvn 176 (288)
.+..|+=||..|--=| +.-+...+.+.++ + -+.|+..+++..||.+++
T Consensus 97 ~g~~V~VHC~aGigRS-----gt~~a~yL~~~~~-~---------------s~~eAi~~vr~~R~~~i~ 144 (166)
T PTZ00242 97 PPETIAVHCVAGLGRA-----PILVALALVEYGG-M---------------EPLDAVGFVREKRKGAIN 144 (166)
T ss_pred CCCeEEEECCCCCCHH-----HHHHHHHHHHhCC-C---------------CHHHHHHHHHHHCCCCch
Confidence 4889999999884221 1112222333332 1 245677777888887765
No 47
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=24.26 E-value=4.3e+02 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHhhCCCcHHHHHHHH
Q psy6709 157 EKYVGEKLDYLVSARPTAVNMKRAA 181 (288)
Q Consensus 157 ~~~l~EtrpyLqgARPTAvnL~~A~ 181 (288)
..++.+-.+.+ ++|||..+=.|-+
T Consensus 49 l~~f~~~l~~~-~~RpS~l~Plw~~ 72 (172)
T PF03232_consen 49 LAWFEQLLPEL-RVRPSLLNPLWYV 72 (172)
T ss_pred HHHHHHHhHHc-CCCCcHHHHHHHH
Confidence 35666666665 5699998866653
No 48
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=22.42 E-value=1.2e+02 Score=27.50 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=7.5
Q ss_pred CCceeecCCCCc
Q psy6709 239 KLNVLTHCNTGS 250 (288)
Q Consensus 239 ~~~vlThcntg~ 250 (288)
+-+|+.||+.|.
T Consensus 133 g~~V~vHC~GGl 144 (168)
T PF05706_consen 133 GRKVLVHCRGGL 144 (168)
T ss_dssp T--EEEE-SSSS
T ss_pred CCEEEEECCCCC
Confidence 458999999975
No 49
>KOG1716|consensus
Probab=21.17 E-value=4e+02 Score=24.98 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=39.0
Q ss_pred CCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcH---HHHHHHHHHHH
Q psy6709 109 KLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTA---VNMKRAADSVK 185 (288)
Q Consensus 109 ~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTA---vnL~~A~~~v~ 185 (288)
+..|+=||+.|=- -.+++.+-+-.+..|.. +.++..+++..||.. .++..++....
T Consensus 155 ~~~vlVHC~~GvS----RSat~viAYlM~~~~~~-----------------l~~A~~~vk~~R~~i~PN~gf~~QL~~~e 213 (285)
T KOG1716|consen 155 GGKVLVHCQAGVS----RSATLVIAYLMKYEGLS-----------------LEDAYELVKSRRPIISPNFGFLRQLLEFE 213 (285)
T ss_pred CCeEEEEcCCccc----hhHHHHHHHHHHHcCCC-----------------HHHHHHHHHHhCCccCCCHHHHHHHHHHH
Confidence 8899999997732 23444444444777665 567777888888887 66666665554
Q ss_pred HHH
Q psy6709 186 SSL 188 (288)
Q Consensus 186 ~~~ 188 (288)
..+
T Consensus 214 ~~l 216 (285)
T KOG1716|consen 214 KRL 216 (285)
T ss_pred Hhh
Confidence 433
No 50
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=21.07 E-value=68 Score=27.54 Aligned_cols=29 Identities=38% Similarity=0.488 Sum_probs=22.9
Q ss_pred CceeecCCCCcccccccccHHHHHHHHHHCCCcce
Q psy6709 240 LNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGA 274 (288)
Q Consensus 240 ~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~ 274 (288)
+--+--||||. |.||++--.+.+.++-..
T Consensus 46 DYY~GACnTGg------GgALamAIallG~~~C~T 74 (117)
T PF10941_consen 46 DYYLGACNTGG------GGALAMAIALLGYGKCAT 74 (117)
T ss_pred CEeEeecCCCc------cHHHHHHHHHhCccceeE
Confidence 46778899987 889998888888777433
Done!