Query psy6709
Match_columns 288
No_of_seqs 210 out of 1433
Neff 4.1
Searched_HMMs 29240
Date Sat Aug 17 01:01:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w2w_A 5-methylthioribose-1-ph 100.0 4.2E-55 1.4E-59 392.1 18.1 199 2-273 1-208 (211)
2 2yvk_A Methylthioribose-1-phos 100.0 1.4E-53 4.8E-58 408.4 18.4 197 2-288 26-223 (374)
3 2a0u_A Initiation factor 2B; S 100.0 4.2E-53 1.4E-57 406.2 18.8 210 2-288 16-227 (383)
4 1t5o_A EIF2BD, translation ini 100.0 8E-53 2.7E-57 400.0 19.6 196 2-288 1-196 (351)
5 1t9k_A Probable methylthioribo 100.0 1.4E-51 4.9E-56 390.9 18.4 193 3-288 6-198 (347)
6 3a11_A Translation initiation 100.0 1.5E-36 5.2E-41 286.7 16.3 167 25-286 14-181 (338)
7 1vb5_A Translation initiation 100.0 3.2E-30 1.1E-34 236.7 12.4 146 32-286 4-149 (276)
8 2a0u_A Initiation factor 2B; S 99.8 2E-24 6.7E-29 207.6 -9.4 142 72-234 139-289 (383)
9 1t5o_A EIF2BD, translation ini 99.8 1.3E-23 4.4E-28 199.7 -4.7 146 72-249 116-268 (351)
10 2yvk_A Methylthioribose-1-phos 99.8 2.6E-24 9E-29 206.1 -10.2 136 72-234 143-285 (374)
11 1t9k_A Probable methylthioribo 99.8 3.4E-24 1.2E-28 203.4 -10.2 137 71-234 117-260 (347)
12 3ecs_A Translation initiation 99.8 1.1E-19 3.7E-24 170.8 6.9 124 150-288 39-163 (315)
13 1w2w_A 5-methylthioribose-1-ph 99.7 2.9E-17 1E-21 147.2 5.0 72 72-143 134-208 (211)
14 3a11_A Translation initiation 99.6 3.1E-19 1.1E-23 168.6 -12.1 125 72-234 111-242 (338)
15 3ecs_A Translation initiation 99.5 8.9E-17 3.1E-21 151.1 -8.9 168 37-248 49-232 (315)
16 1vb5_A Translation initiation 99.3 2.3E-13 8E-18 124.8 0.7 129 67-233 74-209 (276)
17 1w2w_B 5-methylthioribose-1-ph 96.4 1.5E-06 5.3E-11 76.3 -16.1 82 157-248 6-94 (191)
18 3ezz_A Dual specificity protei 35.5 58 0.002 25.1 5.1 12 109-120 81-92 (144)
19 3emu_A Leucine rich repeat and 34.7 51 0.0017 26.5 4.8 12 109-120 87-98 (161)
20 3s4e_A Dual specificity protei 32.8 55 0.0019 25.4 4.6 12 109-120 81-92 (144)
21 2krb_A Eukaryotic translation 25.1 66 0.0022 22.3 3.4 31 14-44 37-67 (81)
22 2dit_A HIV TAT specific factor 22.3 1E+02 0.0035 22.9 4.2 30 14-45 56-85 (112)
23 3s4o_A Protein tyrosine phosph 22.3 91 0.0031 24.1 4.1 13 108-120 108-120 (167)
24 2esb_A Dual specificity protei 20.8 1.3E+02 0.0045 24.6 5.0 11 109-119 97-107 (188)
No 1
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=4.2e-55 Score=392.07 Aligned_cols=199 Identities=43% Similarity=0.647 Sum_probs=168.0
Q ss_pred CcceeEEE---e-C-CcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCC-CCcHHHH
Q psy6709 2 KSLQSIIY---E-K-HSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQ-FPDNELI 75 (288)
Q Consensus 2 ~~~~~i~~---~-~-~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~-~~~~~~~ 75 (288)
|++++|.| + + ++|.||||++||++++|++|++++|+++|||+|+|||||+||++|||||++++++.+ ..
T Consensus 1 m~l~~~~~~~~~~~~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaIgiaAA~glal~a~~~~~~~----- 75 (211)
T 1w2w_A 1 MSLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKHNP----- 75 (211)
T ss_dssp CTTCSEEEECSSTTSCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHCT-----
T ss_pred CCcCCeeeeeecCCCCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHHHHHHHHHHHHHHHhccccC-----
Confidence 67999999 4 4 389999999999999999999999999999999999999999999999999977531 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchH
Q psy6709 76 QLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDS 155 (288)
Q Consensus 76 ~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~ 155 (288)
+....|.. +..+..+
T Consensus 76 ---------------------------------~~~~~~~~--------------------------------~~~~~~~ 90 (211)
T 1w2w_A 76 ---------------------------------TSDVATLY--------------------------------SLVNWES 90 (211)
T ss_dssp ---------------------------------TSTGGGGS--------------------------------CTTCHHH
T ss_pred ---------------------------------Chhhcccc--------------------------------cccchHH
Confidence 00000100 1234557
Q ss_pred HHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC-
Q psy6709 156 LEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLN- 234 (288)
Q Consensus 156 ~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~- 234 (288)
|..++.+...+|..+|||||||+|++++|+..+.+. .+.+++.+.++++|+.|+++|++.|++||+||+++|.+..
T Consensus 91 ~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~---~~~~~~~~~l~~~a~~i~~ed~~~n~~IG~~Ga~lI~~~~~ 167 (211)
T 1w2w_A 91 TKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS---SDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQ 167 (211)
T ss_dssp HHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999877543 5778889999999999999999999999999999994321
Q ss_pred -C-CCCCCceeecCCCCcccccccccHHHHHHHHHHCCCcc
Q psy6709 235 -P-GVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIG 273 (288)
Q Consensus 235 -~-~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~ 273 (288)
+ ..++++||||||||||||+||||||||||++|++||.+
T Consensus 168 ~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~ 208 (211)
T 1w2w_A 168 KDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAK 208 (211)
T ss_dssp HTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCcc
Confidence 1 11468999999999999999999999999999999865
No 2
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=1.4e-53 Score=408.43 Aligned_cols=197 Identities=31% Similarity=0.484 Sum_probs=181.8
Q ss_pred Ccc-eeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q psy6709 2 KSL-QSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIES 80 (288)
Q Consensus 2 ~~~-~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~ 80 (288)
|++ ++|.|+++.|.||||++||++++|++|++++|++++||+|+|||||+||++||||+++++++..
T Consensus 26 m~~~~~~~~~~~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~------------ 93 (374)
T 2yvk_A 26 FAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDIE------------ 93 (374)
T ss_dssp GGSCCSEEECSSCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTCC------------
T ss_pred CcccCceEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhcc------------
Confidence 468 9999999999999999999999999999999999999999999999999999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHH
Q psy6709 81 MLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYV 160 (288)
Q Consensus 81 ~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l 160 (288)
..+.+++..++
T Consensus 94 ---------------------------------------------------------------------~~~~~~l~~~l 104 (374)
T 2yvk_A 94 ---------------------------------------------------------------------TDNVTEFRRRL 104 (374)
T ss_dssp ---------------------------------------------------------------------CSCHHHHHHHH
T ss_pred ---------------------------------------------------------------------CCCHHHHHHHH
Confidence 12345678899
Q ss_pred HHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q psy6709 161 GEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKL 240 (288)
Q Consensus 161 ~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~ 240 (288)
.+...+|..+||||+||.|+.++|+..+.+. .+.+++++.++++++.+.++|++.|++||++|+++|.+ +.
T Consensus 105 ~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~---~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~ 175 (374)
T 2yvk_A 105 EDIKQYLNSSRPTAINLSWALERLSHSVENA---ISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFKK------GD 175 (374)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCT------TC
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CC
Confidence 9999999999999999999999998876432 56788999999999999999999999999999999864 67
Q ss_pred ceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 241 NVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 241 ~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
+||||||+|+|||+|||||+++|+.+|++||.++|||+|||||+||+|
T Consensus 176 ~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~r 223 (374)
T 2yvk_A 176 RIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSR 223 (374)
T ss_dssp EEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHH
T ss_pred EEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHH
Confidence 999999999999999999999999999999999999999999999975
No 3
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=4.2e-53 Score=406.21 Aligned_cols=210 Identities=38% Similarity=0.620 Sum_probs=184.1
Q ss_pred CcceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q psy6709 2 KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESM 81 (288)
Q Consensus 2 ~~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~ 81 (288)
+++++|.|+++.|.||||++||++++|+.|++++|++++||+|+|||||+||++|||||++++++...
T Consensus 16 ~~~~~~~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~------------ 83 (383)
T 2a0u_A 16 ATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAA------------ 83 (383)
T ss_dssp CCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ccccceEEECCEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhhcc------------
Confidence 35889999999999999999999999999999999999999999999999999999999988775320
Q ss_pred HHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHH
Q psy6709 82 LEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVG 161 (288)
Q Consensus 82 ~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 161 (288)
.....+.+++..++.
T Consensus 84 -----------------------------------------------------------------~~~~~~~~~l~~~l~ 98 (383)
T 2a0u_A 84 -----------------------------------------------------------------NGELKSGREVQTFLL 98 (383)
T ss_dssp -----------------------------------------------------------------HSSCCCHHHHHHHHH
T ss_pred -----------------------------------------------------------------cccCCCHHHHHHHHH
Confidence 000123456788999
Q ss_pred HHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC--CCCCC
Q psy6709 162 EKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLN--PGVSK 239 (288)
Q Consensus 162 EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~--~~~~~ 239 (288)
+...+|..+||||+||.|+.++|+..+.+.....+.+++++.++++++.+.++|++.|++||++|+++|.+.. +++++
T Consensus 99 ~~~~~L~~aRPtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~~~~~~~I~~~g~~~I~~~~~~~~~~g 178 (383)
T 2a0u_A 99 TSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDK 178 (383)
T ss_dssp HHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Confidence 9999999999999999999999998876432224678899999999999999999999999999999997321 12246
Q ss_pred CceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 240 LNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 240 ~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
.+||||||+|+|||+||||||++|+.+|++||.++|||+|||||+||+|
T Consensus 179 ~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGar 227 (383)
T 2a0u_A 179 VSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGAR 227 (383)
T ss_dssp EEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHH
T ss_pred CEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHH
Confidence 8999999999999999999999999999999999999999999999975
No 4
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=8e-53 Score=400.03 Aligned_cols=196 Identities=38% Similarity=0.597 Sum_probs=180.5
Q ss_pred CcceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q psy6709 2 KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESM 81 (288)
Q Consensus 2 ~~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~ 81 (288)
|++++|.|+++ |.||||++||++++|++|++++|++++||+|+|||||+||++|||||++++++..
T Consensus 1 m~~~~~~~~~~-l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApai~iaaa~~l~l~~~~~~------------- 66 (351)
T 1t5o_A 1 MSLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIALAARERE------------- 66 (351)
T ss_dssp -CCCSEEESSS-EEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTSSC-------------
T ss_pred CCccceEeeCC-EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhcc-------------
Confidence 56899999988 9999999999999999999999999999999999999999999999999877643
Q ss_pred HHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHH
Q psy6709 82 LEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVG 161 (288)
Q Consensus 82 ~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 161 (288)
..+.+++...+.
T Consensus 67 --------------------------------------------------------------------~~~~~~l~~~l~ 78 (351)
T 1t5o_A 67 --------------------------------------------------------------------FADVDELKEHLK 78 (351)
T ss_dssp --------------------------------------------------------------------CSCHHHHHHHHH
T ss_pred --------------------------------------------------------------------CCCHHHHHHHHH
Confidence 123456788999
Q ss_pred HHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCc
Q psy6709 162 EKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241 (288)
Q Consensus 162 EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~ 241 (288)
+...+|..+||||+||.|+.++|+..+.+ ..+.+++++.++++++.+.++|++.|++||++|+++|.+ +.+
T Consensus 79 ~~~~~L~~aRPtav~l~~a~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~~------g~~ 149 (351)
T 1t5o_A 79 KAADFLASTRPTAVNLFVGIERALNAALK---GESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLED------GDV 149 (351)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT------TCE
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCE
Confidence 99999999999999999999999987754 257888999999999999999999999999999999864 679
Q ss_pred eeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 242 vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
||||||+|+|||+|||||+++|+.+|++||.++|||+|||||+||+|
T Consensus 150 ILThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~r 196 (351)
T 1t5o_A 150 VLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSR 196 (351)
T ss_dssp EEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHH
T ss_pred EEEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHH
Confidence 99999999999999999999999999999999999999999999975
No 5
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=1.4e-51 Score=390.94 Aligned_cols=193 Identities=39% Similarity=0.563 Sum_probs=176.2
Q ss_pred cceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q psy6709 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESML 82 (288)
Q Consensus 3 ~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~ 82 (288)
++++|.|+++.|.||||++||++++|+.|++++|++++||+|+|||||+||++|||||++++++...
T Consensus 6 ~~~~~~~~~~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGAp~ig~aaa~~l~l~~~~~~~------------- 72 (347)
T 1t9k_A 6 KTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDYKT------------- 72 (347)
T ss_dssp BCSSEEECSSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHHHHHHHHHHHHHHHTCCS-------------
T ss_pred cccceEEECCEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhccc-------------
Confidence 4678999999999999999999999999999999999999999999999999999999999886431
Q ss_pred HHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHH
Q psy6709 83 EKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGE 162 (288)
Q Consensus 83 ~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~E 162 (288)
.+ ...++.+
T Consensus 73 --------------------------------------------------------------------~~---~~~~l~~ 81 (347)
T 1t9k_A 73 --------------------------------------------------------------------GS---LTDWMKQ 81 (347)
T ss_dssp --------------------------------------------------------------------SC---HHHHHHH
T ss_pred --------------------------------------------------------------------CC---HHHHHHH
Confidence 01 1356999
Q ss_pred HHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCce
Q psy6709 163 KLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNV 242 (288)
Q Consensus 163 trpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~v 242 (288)
...+|..+||||+||.|+.++|+..+.+. .+.+++++.++++++.+.++|++.|++||++|+++|.+ +.+|
T Consensus 82 ~~~~L~~aRPtav~l~~a~~~~~~~i~~~---~~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~~------g~~I 152 (347)
T 1t9k_A 82 VKETLARTRPTAVNLFWALNRMEKVFFEN---ADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIKD------GSTI 152 (347)
T ss_dssp HHHHHHTSCSSCTHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT------TEEE
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCEE
Confidence 99999999999999999999999887543 35567889999999999999999999999999999864 6799
Q ss_pred eecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 243 LTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 243 lThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
|||||+|+|||+|||||+++|+.+|++||.++|||+||||++||+|
T Consensus 153 LThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~r 198 (347)
T 1t9k_A 153 LTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGAR 198 (347)
T ss_dssp EECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHH
Confidence 9999999999999999999999999999999999999999999975
No 6
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=1.5e-36 Score=286.66 Aligned_cols=167 Identities=23% Similarity=0.310 Sum_probs=146.9
Q ss_pred ceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcC
Q psy6709 25 TSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLN 104 (288)
Q Consensus 25 ~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~ 104 (288)
-++|+.|++++|++++||+|+|||||+||++|+++|++.+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~~------------------------------------ 57 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSK------------------------------------ 57 (338)
T ss_dssp -----CCSHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHCC------------------------------------
T ss_pred eEEEEEeCCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence 46899999999999999999999999999999999999988754
Q ss_pred CCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH
Q psy6709 105 PRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV 184 (288)
Q Consensus 105 ~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v 184 (288)
..+.+++..++.+...+|..+||||+||.|+.++|
T Consensus 58 ---------------------------------------------~~~~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~~ 92 (338)
T 3a11_A 58 ---------------------------------------------ATNVDEFWKEMKQAAKILFETRPTAVSLPNALRYV 92 (338)
T ss_dssp ---------------------------------------------CCSHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHH
T ss_pred ---------------------------------------------CCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 12345678889999999999999999999999999
Q ss_pred HHHHHhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHH
Q psy6709 185 KSSLSEW-AKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVI 263 (288)
Q Consensus 185 ~~~~~~~-~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi 263 (288)
+..+.+. ....+.+++++.++++++.+.++|++.|++||++|+++|.+ +.+||||||+ ||++++|
T Consensus 93 ~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILTh~~S--------~tvl~~l 158 (338)
T 3a11_A 93 MHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIED------GDVIMTHCHS--------KAAISVM 158 (338)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT------TCEEEECSCC--------HHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEeCCc--------HHHHHHH
Confidence 9877541 12357889999999999999999999999999999999864 6799999999 8999999
Q ss_pred HHHHHCCCcceEEeCCCCCCccC
Q psy6709 264 RSLHGANKIGAAYCTETRPYNQG 286 (288)
Q Consensus 264 ~~~~~~~~~~~~~~~ETrP~~QG 286 (288)
+.+|++||.++|||+|||||+||
T Consensus 159 ~~A~~~gk~~~V~v~EtRP~~qG 181 (338)
T 3a11_A 159 KTAWEQGKDIKVIVTETRPKWQG 181 (338)
T ss_dssp HHHHHTTCCCEEEEECCTTTTHH
T ss_pred HHHHHCCCeEEEEEeCCCCchhh
Confidence 99999999999999999999999
No 7
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.96 E-value=3.2e-30 Score=236.70 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCc
Q psy6709 32 NNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLN 111 (288)
Q Consensus 32 ~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~ 111 (288)
.+++|++++||+|+|||||+||+++++++++.+.+..
T Consensus 4 ~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~~------------------------------------------- 40 (276)
T 1vb5_A 4 ERVLEILREMKRERIKGASWLAKKGAEAFLTLAEELD------------------------------------------- 40 (276)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHSC-------------------------------------------
T ss_pred ccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhcC-------------------------------------------
Confidence 4789999999999999999999999999998776521
Q ss_pred cccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhh
Q psy6709 112 VLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEW 191 (288)
Q Consensus 112 vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~ 191 (288)
.+++...+.+...+|..+|||++||.|+.++| +
T Consensus 41 -----------------------------------------~~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~-----~- 73 (276)
T 1vb5_A 41 -----------------------------------------ESLLEDAIMELREEVVKVNPSMASLYNLARFI-----P- 73 (276)
T ss_dssp -----------------------------------------TTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS-----C-
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc-----C-
Confidence 12457789999999999999999999999888 1
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCC
Q psy6709 192 AKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANK 271 (288)
Q Consensus 192 ~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~ 271 (288)
.+++++.+++.++.+.+++.+.+++||++|+++|.+ +.+||||||+ ||++++++.+|++||
T Consensus 74 -----~~~~k~~l~~~~~~~~~~~~~~~~~Ia~~a~~~I~~------g~~IlT~~~s--------~Tv~~~l~~a~~~~~ 134 (276)
T 1vb5_A 74 -----VTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDD------GDVIITHSFS--------STVLEIIRTAKERKK 134 (276)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT------TEEEECCSCC--------HHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCEEEEeCCC--------hHHHHHHHHHHHcCC
Confidence 123467899999999999999999999999999864 6799999999 799999999999999
Q ss_pred cceEEeCCCCCCccC
Q psy6709 272 IGAAYCTETRPYNQG 286 (288)
Q Consensus 272 ~~~~~~~ETrP~~QG 286 (288)
.++||++|||||+||
T Consensus 135 ~~~V~v~etrP~~qG 149 (276)
T 1vb5_A 135 RFKVILTESSPDYEG 149 (276)
T ss_dssp CEEEEEECCTTTTHH
T ss_pred eEEEEEeCCCcchhh
Confidence 999999999999999
No 8
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=99.85 E-value=2e-24 Score=207.56 Aligned_cols=142 Identities=27% Similarity=0.367 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcC--CCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLN--PRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQ 149 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~--~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~ 149 (288)
..+++.+.+|.+++.+.+++||++|+++|.+.. +..++++||||||+|+|||+|||||+++|+.+|++||.+
T Consensus 139 ~~l~~~a~~i~~e~~~~~~~I~~~g~~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~------ 212 (383)
T 2a0u_A 139 QAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLE------ 212 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEE------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeE------
Confidence 458999999999999999999999999998321 112599999999999999999999999999999999988
Q ss_pred CCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHH-------HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 150 FPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADS-------VKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAI 222 (288)
Q Consensus 150 ~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~-------v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kI 222 (288)
++|+.|+||++||+|+||++|.+.+.+ +...+++. +. ++.++-.||+|..++ ...+||
T Consensus 213 -------~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa~~~~M~~---~~----Vd~ViVGAD~V~aNG-~v~NKi 277 (383)
T 2a0u_A 213 -------RVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLN---RK----IDAVVVGADRICQNG-DTANKI 277 (383)
T ss_dssp -------EEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHH---SC----CCEEEECCSEECTTC-CEEEET
T ss_pred -------EEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhHHHHHhhc---CC----CCEEEECccEEecCC-CEeecc
Confidence 679999999999999999999998733 34444433 11 345666788888888 777899
Q ss_pred HHHHHHHhhhhC
Q psy6709 223 GRNGAQALIDLN 234 (288)
Q Consensus 223 G~~ga~~l~~~~ 234 (288)
|+++.+++++..
T Consensus 278 GTy~lAl~Ak~~ 289 (383)
T 2a0u_A 278 GTYNLAVSAKFH 289 (383)
T ss_dssp THHHHHHHHHHT
T ss_pred cHHHHHHHHHHc
Confidence 999999998764
No 9
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=99.85 E-value=1.3e-23 Score=199.74 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
..+++.+.+|.+++.+.+++||++|+++|.| +++||||||+|++||+|||||+++|+.+|++||.+
T Consensus 116 ~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILThcnsg~lat~g~gtal~~l~~A~~~gk~~-------- 181 (351)
T 1t5o_A 116 ELALREAEKLAEEDVERNRKMGEYGAELLED------GDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEI-------- 181 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT------TCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEecCCccccccCCChHHHHHHHHHHCCCEE--------
Confidence 4589999999999999999999999999986 99999999999999999999999999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHH-------HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADS-------VKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~-------v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|+.|+||++||+|+||++|.+.+.+ +...+++. +. ++.++-.||+|..++ ..+|||+
T Consensus 182 -----~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~---~~----Vd~VivGAd~V~aNG--v~NKiGT 247 (351)
T 1t5o_A 182 -----RVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQK---GM----VDKVIVGADRIVRDA--VFNKIGT 247 (351)
T ss_dssp -----EEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHT---TC----CSEEEECCSEEETTE--EEEETTH
T ss_pred -----EEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhc---CC----CCEEEECccchhhcC--cccccCH
Confidence 679999999999999999999998743 34444433 12 455666788898888 7889999
Q ss_pred HHHHHhhhhCCCCCCCceeecCCCC
Q psy6709 225 NGAQALIDLNPGVSKLNVLTHCNTG 249 (288)
Q Consensus 225 ~ga~~l~~~~~~~~~~~vlThcntg 249 (288)
++.+++++.. +..+.--|++-
T Consensus 248 ~~lAl~Ak~~----~vPfyV~a~~~ 268 (351)
T 1t5o_A 248 YTVSVVAKHH----NIPFYVAAPKA 268 (351)
T ss_dssp HHHHHHHHHT----TCCEEEECCGG
T ss_pred HHHHHHHHHc----CCCEEEeCccc
Confidence 9999998754 24455555553
No 10
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=99.84 E-value=2.6e-24 Score=206.14 Aligned_cols=136 Identities=21% Similarity=0.251 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
..+++.+.+|.+++.+.+++||++|+++|.| +++||||||+|++||+|||||+++|+.++++||.+
T Consensus 143 ~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~-------- 208 (374)
T 2yvk_A 143 TNLVHEAIQIQVEDEETCRLIGQNALQLFKK------GDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGL-------- 208 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCT------TCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEecCCCccccCCCcHHHHHHHHHHHcCCEE--------
Confidence 5589999999999999999999999999986 99999999999999999999999999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHH-------HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADS-------VKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~-------v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|+.|+||++||+|+||++|.+.+.+ +...+++. +. ++.++-.||+|..++ ...+|||+
T Consensus 209 -----~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~---~~----Vd~ViVGAD~V~aNG-~v~NKiGT 275 (374)
T 2yvk_A 209 -----HIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKE---KQ----ISAVIVGADRIAKNG-DTANKIGT 275 (374)
T ss_dssp -----EEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHH---TT----CCEEEECCSEEETTC-CEEEETTH
T ss_pred -----EEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhh---cC----CCEEEECccEEecCC-CEEecccH
Confidence 679999999999999999999998733 34444332 11 345566788888887 67789999
Q ss_pred HHHHHhhhhC
Q psy6709 225 NGAQALIDLN 234 (288)
Q Consensus 225 ~ga~~l~~~~ 234 (288)
++.+++++..
T Consensus 276 y~lAl~Ak~~ 285 (374)
T 2yvk_A 276 YGLAILANAF 285 (374)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999998764
No 11
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=99.84 E-value=3.4e-24 Score=203.43 Aligned_cols=137 Identities=33% Similarity=0.406 Sum_probs=118.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCC
Q psy6709 71 DNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQF 150 (288)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~ 150 (288)
...+++.+.+|.+++.+.+++||++|+++|.| +++||||||++++||+|||||+++|+.+|++||.+
T Consensus 117 k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILThcns~~lat~~~gtvl~~l~~A~~~gk~~------- 183 (347)
T 1t9k_A 117 FEILENEALKMAYEDIEVNKAIGKNGAQLIKD------GSTILTHCNAGALATVDYGTALGVIRAAVESGKRI------- 183 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT------TEEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCE-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEecCCCccccCCccHHHHHHHHHHHCCCeE-------
Confidence 46699999999999999999999999999986 99999999999999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHH-------HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADS-------VKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIG 223 (288)
Q Consensus 151 ~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~-------v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG 223 (288)
++|+.|+||++||+|+||++|.+.+.+ +...+++. +. ++.++-.||+|..++ ...+|||
T Consensus 184 ------~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~---~~----Vd~VivGAd~V~aNG-~v~NKiG 249 (347)
T 1t9k_A 184 ------RVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKR---GL----IDAVVVGADRIALNG-DTANKIG 249 (347)
T ss_dssp ------EEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHT---TC----CSEEEECCSEEETTS-CEEEETT
T ss_pred ------EEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhhc---CC----CCEEEECccEEecCC-CEEeccc
Confidence 679999999999999999999998733 34444433 11 345666788888888 6778999
Q ss_pred HHHHHHhhhhC
Q psy6709 224 RNGAQALIDLN 234 (288)
Q Consensus 224 ~~ga~~l~~~~ 234 (288)
+++.+++++..
T Consensus 250 T~~lAl~Ak~~ 260 (347)
T 1t9k_A 250 TYSLAVLAKRN 260 (347)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 12
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=170.84 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=99.3
Q ss_pred CCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 150 FPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEW-AKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQ 228 (288)
Q Consensus 150 ~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~-~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~ 228 (288)
..+..++...+.++..+|..+|| +++|.|+.+.+...+... ....+.+++++.+++.++.+.++....+++||++|++
T Consensus 39 ~~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~a~~~I~~~~~~ 117 (315)
T 3ecs_A 39 GETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHT 117 (315)
T ss_dssp ----CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHHHHHHHHHHHTTHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999999997 889999999988754211 1224567888889999988887666668899999999
Q ss_pred HhhhhCCCCCCCceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709 229 ALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288 (288)
Q Consensus 229 ~l~~~~~~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR 288 (288)
+|.+ +.+||||||+ ||++++|+.++++||.++|||+||||++||+|
T Consensus 118 ~I~~------g~~ILTh~~S--------~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~ 163 (315)
T 3ecs_A 118 FIKD------GATILTHAYS--------RVVLRVLEAAVAAKKRFSVYVTESQPDLSGKK 163 (315)
T ss_dssp GCCT------TEEEEECSCC--------HHHHHHHHHHHTTTCCEEEEEECCTTTTHHHH
T ss_pred HcCC------CCEEEEcCCc--------HHHHHHHHHHHHcCCeEEEEEecCCCcchHHH
Confidence 8865 6799999999 79999999999999999999999999999975
No 13
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.66 E-value=2.9e-17 Score=147.16 Aligned_cols=72 Identities=44% Similarity=0.693 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCC---CCCCccccccCCCcchhhhcchhHHHHHHhhhcCccc
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPR---VSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIV 143 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~---~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v 143 (288)
..+++.+..|.++|.+.+++||+||+++|.+...+ .++++||||||||+|||+|||||||+||++|++||.+
T Consensus 134 ~~l~~~a~~i~~ed~~~n~~IG~~Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~ 208 (211)
T 1w2w_A 134 GSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAK 208 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCcc
Confidence 45889999999999999999999999999544221 2689999999999999999999999999999999976
No 14
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=99.63 E-value=3.1e-19 Score=168.63 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCC
Q psy6709 72 NELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFP 151 (288)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~ 151 (288)
..+++.+.+|++++.+.+++||++|+++|.| +++||||||| |||+++|+.++++||.+
T Consensus 111 ~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~------g~~ILTh~~S--------~tvl~~l~~A~~~gk~~-------- 168 (338)
T 3a11_A 111 FVIINAAKEFIHNSEKALERIGEFGAKRIED------GDVIMTHCHS--------KAAISVMKTAWEQGKDI-------- 168 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT------TCEEEECSCC--------HHHHHHHHHHHHTTCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEeCCc--------HHHHHHHHHHHHCCCeE--------
Confidence 4589999999999999999999999999986 9999999999 58999999999999987
Q ss_pred CchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGR 224 (288)
Q Consensus 152 ~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~ 224 (288)
++|+.|+||++|| |+||++|.+.+.++ ...++.. ++.++-.||+|..++ ...+|||+
T Consensus 169 -----~V~v~EtRP~~qG-rltA~eL~~~GI~vtlI~Dsa~~~~M~~---------Vd~VivGAd~V~anG-~v~NKiGT 232 (338)
T 3a11_A 169 -----KVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYMKM---------TDKVVMGADSITVNG-AVINKIGT 232 (338)
T ss_dssp -----EEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGTTTTGGG---------CSEEEECCSEECTTS-CEEEETTH
T ss_pred -----EEEEeCCCCchhh-HHHHHHHHhCCCCEEEEehHHHHHHHHh---------CCEEEECccEEecCC-CEeecccH
Confidence 6799999999999 99999999987444 2222211 456677788888888 77789999
Q ss_pred HHHHHhhhhC
Q psy6709 225 NGAQALIDLN 234 (288)
Q Consensus 225 ~ga~~l~~~~ 234 (288)
++.+++++..
T Consensus 233 ~~lAl~Ak~~ 242 (338)
T 3a11_A 233 ALIALTAKEH 242 (338)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999998764
No 15
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=99.50 E-value=8.9e-17 Score=151.07 Aligned_cols=168 Identities=18% Similarity=0.133 Sum_probs=126.5
Q ss_pred HHHHHHhc-hhcCChhHHHHHHHHHHHHHH--------hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCC
Q psy6709 37 AYQAIKSM-QVRGAPAIAIVGCLGLVVDIK--------DKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRV 107 (288)
Q Consensus 37 v~~AIk~M-~VRGAPaIgiaaA~glal~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~ 107 (288)
+-++++.| ..| |++.+..+.-+++... +.+.....+++.+..|+++......+||++|+++|+|
T Consensus 49 l~~a~~~L~~~r--~avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~a~~~I~~~~~~~I~~----- 121 (315)
T 3ecs_A 49 LTSAIETLCGVD--SSVAVSSGGELFLRFISLASLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKD----- 121 (315)
T ss_dssp HHHHHHTTTTTS--CCHHHHHHHHHHHHHCC-----------CTTHHHHHHHHHHHHHTTHHHHHHHHHGGGCCT-----
T ss_pred HHHHHHHHHhCC--CCccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 33344444 345 8888877777776621 1122345688999999999999999999999999997
Q ss_pred CCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH---
Q psy6709 108 SKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV--- 184 (288)
Q Consensus 108 ~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v--- 184 (288)
|++||||||++ |++++|+.++++||.+ ++|+.|+||++||.|. |++|.+.+.++
T Consensus 122 -g~~ILTh~~S~--------tv~~~l~~A~~~gk~~-------------~V~v~EsrP~~qG~~l-a~~L~~~gI~vtli 178 (315)
T 3ecs_A 122 -GATILTHAYSR--------VVLRVLEAAVAAKKRF-------------SVYVTESQPDLSGKKM-AKALCHLNVPVTVV 178 (315)
T ss_dssp -TEEEEECSCCH--------HHHHHHHHHHTTTCCE-------------EEEEECCTTTTHHHHH-HHHHHTTTCCEEEE
T ss_pred -CCEEEEcCCcH--------HHHHHHHHHHHcCCeE-------------EEEEecCCCcchHHHH-HHHHHHcCCCEEEE
Confidence 99999999995 8999999999999987 6799999999999876 99999987333
Q ss_pred ----HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCceeecCCC
Q psy6709 185 ----KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNT 248 (288)
Q Consensus 185 ----~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~vlThcnt 248 (288)
...+++. ++.++-.|++|..++ ...+|+|+++.+++++.. +..+.--|++
T Consensus 179 ~Dsa~~~~m~~---------vd~VivGAd~i~~nG-~v~nkiGT~~iAl~Ak~~----~vP~~V~a~~ 232 (315)
T 3ecs_A 179 LDAAVGYIMEK---------ADLVIVGAEGVVENG-GIINKIGTNQMAVCAKAQ----NKPFYVVAES 232 (315)
T ss_dssp CGGGHHHHGGG---------CSEEEEECSEECTTS-CEEEETTHHHHHHHHHHT----TCCEEEECCG
T ss_pred ehhHHHHHHHh---------CCEEEECceEEecCC-CeeehhhhHHHHHHHHHh----CCCEEEEecc
Confidence 3344332 345666778888777 778899999999988754 2344444544
No 16
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.31 E-value=2.3e-13 Score=124.77 Aligned_cols=129 Identities=13% Similarity=0.022 Sum_probs=99.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccc
Q psy6709 67 KQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIK 146 (288)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~ 146 (288)
.+...+.+++.+.+|++++.+.+++||++|+++|+| +++||||||++ |++++++.++++||.+
T Consensus 74 ~~~~k~~l~~~~~~~~~~~~~~~~~Ia~~a~~~I~~------g~~IlT~~~s~--------Tv~~~l~~a~~~~~~~--- 136 (276)
T 1vb5_A 74 VTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDD------GDVIITHSFSS--------TVLEIIRTAKERKKRF--- 136 (276)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT------TEEEECCSCCH--------HHHHHHHHHHHTTCCE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCEEEEeCCCh--------HHHHHHHHHHHcCCeE---
Confidence 334457799999999999999999999999999986 99999999995 8999999999999987
Q ss_pred cCCCCCchHHHHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 147 DKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDN 219 (288)
Q Consensus 147 ~~~~~~~~~~~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n 219 (288)
++|+.|+||++|| |+||++|.+.+.++ ...+++. ++.++-.|++|..++ ...
T Consensus 137 ----------~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa~~~~m~~---------vd~vivGAd~i~~nG-~v~ 195 (276)
T 1vb5_A 137 ----------KVILTESSPDYEG-LHLARELEFSGIEFEVITDAQMGLFCRE---------ASIAIVGADMITKDG-YVV 195 (276)
T ss_dssp ----------EEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGHHHHHTT---------CSEEEECCSEECTTS-CEE
T ss_pred ----------EEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHHHHHHHcc---------CCEEEEcccEEecCC-CEe
Confidence 6689999999999 99999999875332 2222211 233444455555555 344
Q ss_pred HHHHHHHHHHhhhh
Q psy6709 220 KAIGRNGAQALIDL 233 (288)
Q Consensus 220 ~kIG~~ga~~l~~~ 233 (288)
+|+|++..+++++.
T Consensus 196 nkiGt~~iA~~A~~ 209 (276)
T 1vb5_A 196 NKAGTYLLALACHE 209 (276)
T ss_dssp EETTHHHHHHHHHH
T ss_pred echhHHHHHHHHHH
Confidence 45777777776654
No 17
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=96.41 E-value=1.5e-06 Score=76.26 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=56.1
Q ss_pred HHHHHHHHHhHhhCCCcHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6709 157 EKYVGEKLDYLVSARPTAVNMKRAADSV-------KSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQA 229 (288)
Q Consensus 157 ~~~l~EtrpyLqgARPTAvnL~~A~~~v-------~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~ 229 (288)
++|+.|+||++||+|+||++|.+.+.++ ...+++.. ..+ ++.++-.|++|..++ ...+|||++..++
T Consensus 6 ~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~-~~~----Vd~VivGAd~v~~nG-~v~nkiGT~~~Al 79 (191)
T 1w2w_B 6 HVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTS-PIP----IKAAFVGADRIVRNG-DTANKIGTLQLAV 79 (191)
T ss_dssp EEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHC-SSC----EEEEEECCSEECTTS-CEEEETTHHHHHH
T ss_pred EEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhC-CCC----CCEEEECccEEecCC-CEEecccHHHHHH
Confidence 6789999999999999999999987433 33333220 000 233455577787777 6778999999999
Q ss_pred hhhhCCCCCCCceeecCCC
Q psy6709 230 LIDLNPGVSKLNVLTHCNT 248 (288)
Q Consensus 230 l~~~~~~~~~~~vlThcnt 248 (288)
+++.. +..++--|++
T Consensus 80 ~Ak~~----~vPf~V~a~~ 94 (191)
T 1w2w_B 80 ICKQF----GIKFFVVAPK 94 (191)
T ss_dssp HHHHH----TCEEEEECCG
T ss_pred HHHHc----CCCEEEeccc
Confidence 98753 2344444444
No 18
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=35.54 E-value=58 Score=25.09 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=10.4
Q ss_pred CCccccccCCCc
Q psy6709 109 KLNVLTHCNTGS 120 (288)
Q Consensus 109 ~~~vlThCnt~~ 120 (288)
+..|+=||..|-
T Consensus 81 ~~~VlVHC~~G~ 92 (144)
T 3ezz_A 81 RGRVLVHSQAGI 92 (144)
T ss_dssp TCCEEEEESSSS
T ss_pred CCeEEEECCCCC
Confidence 678999999884
No 19
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=34.74 E-value=51 Score=26.51 Aligned_cols=12 Identities=42% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCccccccCCCc
Q psy6709 109 KLNVLTHCNTGS 120 (288)
Q Consensus 109 ~~~vlThCnt~~ 120 (288)
+..||=||..|-
T Consensus 87 ~~~VlVHC~~G~ 98 (161)
T 3emu_A 87 KEGVLIISGTGV 98 (161)
T ss_dssp TCEEEEEESSSS
T ss_pred CCeEEEEcCCCC
Confidence 678999999884
No 20
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=32.82 E-value=55 Score=25.39 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=10.3
Q ss_pred CCccccccCCCc
Q psy6709 109 KLNVLTHCNTGS 120 (288)
Q Consensus 109 ~~~vlThCnt~~ 120 (288)
+..||=||..|-
T Consensus 81 ~~~VlVHC~~G~ 92 (144)
T 3s4e_A 81 DGVVLVHSNAGV 92 (144)
T ss_dssp TCCEEEECSSSS
T ss_pred CCeEEEEcCCCC
Confidence 678999999884
No 21
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=25.06 E-value=66 Score=22.28 Aligned_cols=31 Identities=10% Similarity=-0.048 Sum_probs=24.1
Q ss_pred EEEeeccCCCCceeEEEcCCHHHHHHHHHhc
Q psy6709 14 LKILDQLLLPHTSKLVDINNVEDAYQAIKSM 44 (288)
Q Consensus 14 l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M 44 (288)
+.|.+..--|.-..|+...+.+++..||+.|
T Consensus 37 v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 37 DFYPEEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp EECCCBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred EEecCCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 3334444456679999999999999999987
No 22
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.34 E-value=1e+02 Score=22.93 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.1
Q ss_pred EEEeeccCCCCceeEEEcCCHHHHHHHHHhch
Q psy6709 14 LKILDQLLLPHTSKLVDINNVEDAYQAIKSMQ 45 (288)
Q Consensus 14 l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~ 45 (288)
+.|.|.. |.-..||...+.+++..||+.|.
T Consensus 56 v~i~~~~--~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 56 LLLFDRH--PDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp EEEETTC--TTCEEEEECSCHHHHHHHHHHST
T ss_pred EEEecCC--CCEEEEEEECCHHHHHHHHHHcC
Confidence 5555654 78899999999999999999883
No 23
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=22.29 E-value=91 Score=24.09 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=10.9
Q ss_pred CCCccccccCCCc
Q psy6709 108 SKLNVLTHCNTGS 120 (288)
Q Consensus 108 ~~~~vlThCnt~~ 120 (288)
++..||=||.+|-
T Consensus 108 ~~~~vlVHC~aG~ 120 (167)
T 3s4o_A 108 PPPTIGVHCVAGL 120 (167)
T ss_dssp CCCEEEEECSSSS
T ss_pred CCCcEEEECCCCC
Confidence 4779999999884
No 24
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=20.81 E-value=1.3e+02 Score=24.65 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=10.1
Q ss_pred CCccccccCCC
Q psy6709 109 KLNVLTHCNTG 119 (288)
Q Consensus 109 ~~~vlThCnt~ 119 (288)
+..||=||.+|
T Consensus 97 ~~~VLVHC~aG 107 (188)
T 2esb_A 97 QGRTLLHCAAG 107 (188)
T ss_dssp TCCEEEECSSS
T ss_pred CCEEEEECCCC
Confidence 78899999988
Done!