RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6709
(288 letters)
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative eukaryotic initiation factor; 2.10A
{Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 181 bits (462), Expect = 5e-55
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
+A G A+ R + + ++ ++ D+++++RPTAVN+
Sbjct: 68 VSAALGIAVATQR---------KAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCL 118
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSK-- 239
+K+ + + V ++L E++ D++ N+ I R+GA ++ +
Sbjct: 119 RDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDK 178
Query: 240 LNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
+++LT CNTG+LAT+ YGTALGV+R L K+ Y ETRP+NQGAR
Sbjct: 179 VSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGAR 227
Score = 167 bits (425), Expect = 1e-49
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 55/197 (27%)
Query: 2 KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLV 61
+L+SI Y SL++LDQ LP + D+ VED + AIK M+VRGAPAIA+ LG+
Sbjct: 16 ATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIA 75
Query: 62 VDIKDKQFPD---------------------------------NELIQLIES-------- 80
V + K +L ++
Sbjct: 76 VATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAA 135
Query: 81 ------------MLEKDISDNKAIGRNGAQALIDLNPRVSK--LNVLTHCNTGSLATAEY 126
+ D++ N+ I R+GA ++ + +++LT CNTG+LAT+ Y
Sbjct: 136 EVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRY 195
Query: 127 GTALGVIRSLHGANKIV 143
GTALGV+R L K+
Sbjct: 196 GTALGVVRQLFYDGKLE 212
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit
delta, structural GEN PSI, protein structure initiative;
1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Length = 351
Score = 165 bits (420), Expect = 4e-49
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
A YG AL ++++F D D L++++ + D+L S RPTAVN+
Sbjct: 52 AAGAYGIALA-------------AREREFADVDELKEHLKKAADFLASTRPTAVNLFVGI 98
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241
+ ++ + V VK ++ E + E+D+ N+ +G GA+ L D
Sbjct: 99 ERALNAALK---GESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLED------GDV 149
Query: 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
VLT+CN G LAT ++GTALGV+RS K ETRP NQG+R
Sbjct: 150 VLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSR 196
Score = 157 bits (399), Expect = 5e-46
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 53/187 (28%)
Query: 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV 62
SL+SI ++ LK++DQ LP ++++ NVE+ AIK + VRGAPA+ G G+ +
Sbjct: 2 SLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIAL 60
Query: 63 DIKDKQFPDNE----------------------------------------------LIQ 76
++++F D + ++
Sbjct: 61 AAREREFADVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALR 120
Query: 77 LIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSL 136
E + E+D+ N+ +G GA+ L D VLT+CN G LAT ++GTALGV+RS
Sbjct: 121 EAEKLAEEDVERNRKMGEYGAELLED------GDVVLTYCNAGRLATVDWGTALGVVRSA 174
Query: 137 HGANKIV 143
K +
Sbjct: 175 VEQGKEI 181
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage
pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB:
2yrf_A*
Length = 374
Score = 162 bits (412), Expect = 7e-48
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
TA +G AL KD + + + + + YL S+RPTA+N+ A
Sbjct: 79 ITAAFGLALA-------------AKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWAL 125
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241
+ + S+ A VN KT L+ + +D + IG+N Q
Sbjct: 126 ERLSHSVEN---AISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFKK------GDR 176
Query: 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
++T CN GS+AT+ YGTAL + Y ETRP QG+R
Sbjct: 177 IMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSR 223
Score = 161 bits (409), Expect = 2e-47
Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 52/189 (27%)
Query: 1 MKSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGL 60
+S+ +++ ++ IL+Q LP ++ +++ ED + AI +++VRGAPAI I GL
Sbjct: 26 FAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGL 85
Query: 61 VVDIKDKQFPDNE----------------------------------------------L 74
+ KD + + L
Sbjct: 86 ALAAKDIETDNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENAISVNEAKTNL 145
Query: 75 IQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIR 134
+ + +D + IG+N Q ++T CN GS+AT+ YGTAL
Sbjct: 146 VHEAIQIQVEDEETCRLIGQNALQLFKK------GDRIMTICNAGSIATSRYGTALAPFY 199
Query: 135 SLHGANKIV 143
+ +
Sbjct: 200 LAKQKDLGL 208
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural
genomics, translation initiation factor, AIF-2B subunit,
PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Length = 347
Score = 160 bits (407), Expect = 2e-47
Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 25/167 (14%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
A +G LG+ SL ++ + + L RPTAVN+ A
Sbjct: 57 VAAAFGYVLGLRDY----------------KTGSLTDWMKQVKETLARTRPTAVNLFWAL 100
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241
+ ++ E + + L M +DI NKAIG+NGAQ + D
Sbjct: 101 NRMEKVFFE---NADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIKD------GST 151
Query: 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
+LTHCN G+LAT +YGTALGVIR+ + K + ETRPY QGAR
Sbjct: 152 ILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGAR 198
Score = 158 bits (403), Expect = 1e-46
Identities = 57/184 (30%), Positives = 80/184 (43%), Gaps = 49/184 (26%)
Query: 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV 62
+++ + +SLK+LDQ LP + V+ E+ AIK M VRGAPAI + G V+
Sbjct: 6 KTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVL 65
Query: 63 DIKDKQFPDNE-------------------------------------------LIQLIE 79
++D + L
Sbjct: 66 GLRDYKTGSLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEILENEAL 125
Query: 80 SMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGA 139
M +DI NKAIG+NGAQ + D +LTHCN G+LAT +YGTALGVIR+ +
Sbjct: 126 KMAYEDIEVNKAIGKNGAQLIKD------GSTILTHCNAGALATVDYGTALGVIRAAVES 179
Query: 140 NKIV 143
K +
Sbjct: 180 GKRI 183
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 211
Score = 150 bits (382), Expect = 3e-45
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
++ + + +S + + ++LD+L+S+RPTAVN+ +
Sbjct: 58 IVGSLSVLTE-VQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSL 116
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVS--- 238
+K+ L +S + L + ++++D+++N +G NGA+ LID+
Sbjct: 117 VEIKNILKS---SSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKD 173
Query: 239 KLNVLTHCNTGSLATAEYGTALGVIRSLHGANKI 272
+ VLT CNTGSLAT+ YGTALGVIRSL +
Sbjct: 174 EFAVLTICNTGSLATSGYGTALGVIRSLWKDSLA 207
Score = 105 bits (265), Expect = 8e-28
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 58 LGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVS---KLNVLT 114
++ D + D L + ++++D+++N +G NGA+ LID+ + + VLT
Sbjct: 120 KNILKSSSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKDEFAVLT 179
Query: 115 HCNTGSLATAEYGTALGVIRSLHGANKI 142
CNTGSLAT+ YGTALGVIRSL +
Sbjct: 180 ICNTGSLATSGYGTALGVIRSLWKDSLA 207
Score = 95.5 bits (238), Expect = 6e-24
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
Query: 3 SLQSIIY-----EKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGC 57
SL++I++ E S+K+LDQLLLP+T+K V I+ ++D Y IKSMQVRGAPAIAIVG
Sbjct: 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGS 61
Query: 58 LGLVVDIKDKQFPDNELIQLIESMLEKDISDNK 90
L ++ +++ + + + S++ + +
Sbjct: 62 LSVLTEVQLIKHNPTSDVATLYSLVNWESTKTV 94
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase,
hexamer, rossmann fold; 2.50A {Thermococcus
kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Length = 338
Score = 132 bits (333), Expect = 2e-36
Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 28/166 (16%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
+A Y L + + + D K + + L RPTAV++ A
Sbjct: 43 RSAAYALQLQ-------------AEKSKATNVDEFWKEMKQAAKILFETRPTAVSLPNAL 89
Query: 182 DSVKSSLSE-WAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKL 240
V ++ + + ++ +I + + + IG GA+ + D
Sbjct: 90 RYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIED------GD 143
Query: 241 NVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQG 286
++THC++ A+ V+++ K TETRP QG
Sbjct: 144 VIMTHCHSK--------AAISVMKTAWEQGKDIKVIVTETRPKWQG 181
Score = 102 bits (255), Expect = 2e-25
Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 70/178 (39%)
Query: 22 LPHTSKLVD------INNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNE-- 73
+ H ++ + V + + IK+M++RGA IA L + + + + +
Sbjct: 5 VHHHHHHIEGRHMAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEF 64
Query: 74 ------------------------------------------------LIQLIESMLEKD 85
+I + +
Sbjct: 65 WKEMKQAAKILFETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNS 124
Query: 86 ISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIV 143
+ IG GA+ + D ++THC++ A+ V+++ K +
Sbjct: 125 EKALERIGEFGAKRIED------GDVIMTHCHS--------KAAISVMKTAWEQGKDI 168
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii}
SCOP: c.124.1.5
Length = 276
Score = 120 bits (304), Expect = 7e-33
Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 41/167 (24%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
D LE + E + +V P+ ++ A
Sbjct: 26 KKGAEAFLTLAEEL----------------DESLLEDAIMELREEVVKVNPSMASLYNLA 69
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241
+ PV + L L + + + GAQ + D
Sbjct: 70 RFI-----------PVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDD------GDV 112
Query: 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
++TH + T L +IR+ K TE+ P +G
Sbjct: 113 IITHSFSS--------TVLEIIRTAKERKKRFKVILTESSPDYEGLH 151
Score = 96.1 bits (240), Expect = 1e-23
Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 57/158 (36%)
Query: 21 LLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNE------- 73
+LP V + + +K +++GA +A G + ++ E
Sbjct: 1 MLPER--------VLEILREMKRERIKGASWLAKKGAEAFLTLAEELDESLLEDAIMELR 52
Query: 74 ----------------------------LIQLIESMLEKDISDNKAIGRNGAQALIDLNP 105
L L + + + GAQ + D
Sbjct: 53 EEVVKVNPSMASLYNLARFIPVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDD--- 109
Query: 106 RVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIV 143
++TH + T L +IR+ K
Sbjct: 110 ---GDVIITHSFS--------STVLEIIRTAKERKKRF 136
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 93.2 bits (232), Expect = 3e-22
Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 16/148 (10%)
Query: 142 IVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWA-KASPVNTV 200
+ +K + L + ++ L ++V + + +S + + S +
Sbjct: 31 LEFLKRDKGETIQGLRANLTSAIETLC-GVDSSVAVSSGGELFLRFISLASLEYSDYSKC 89
Query: 201 KTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTAL 260
K +I+ E L + I + D +LTH + L
Sbjct: 90 KKIMIERGELFLRRISLSRNKIADLCHTFIKD------GATILTHAYSR--------VVL 135
Query: 261 GVIRSLHGANKIGAAYCTETRPYNQGAR 288
V+ + A K + Y TE++P G +
Sbjct: 136 RVLEAAVAAKKRFSVYVTESQPDLSGKK 163
Score = 51.2 bits (123), Expect = 1e-07
Identities = 18/159 (11%), Positives = 35/159 (22%), Gaps = 64/159 (40%)
Query: 33 NVEDAYQAIKSMQVRGAP-AIAIVGCLGLVVDIKDKQFPDNE------------------ 73
+ ++ + KS A A+ L+ +K + +
Sbjct: 2 DDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDS 61
Query: 74 -------------------------------LIQLIESMLEKDISDNKAIGRNGAQALID 102
+I+ E L + I + D
Sbjct: 62 SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKD 121
Query: 103 LNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANK 141
+LTH + L V+ + A K
Sbjct: 122 ------GATILTHAYS--------RVVLRVLEAAVAAKK 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 6e-07
Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 97/280 (34%)
Query: 19 QLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPA--IAIVGCLGLVVDIKDKQFPDNELIQ 76
P+TS + + +ED+ + G P+ ++I ++
Sbjct: 311 YEAYPNTS--LPPSILEDSLE-----NNEGVPSPMLSISNL------------TQEQVQD 351
Query: 77 LIESMLEKDISDNKAIG---RNGA---------QALIDLNPRVSKLNVLTHCN------- 117
+ + K + NGA Q+L LN + K + +
Sbjct: 352 YVNK-TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 118 ----TGSLA----TAEYGTALGVIRSLHGANKIV--DIKDKQFPDNDSLEKYVGEKLDYL 167
S + + + L L A+ ++ D+ + + +
Sbjct: 411 ERKLKFSNRFLPVASPFHSHL-----LVPASDLINKDLVKNNV-------SFNAKDIQIP 458
Query: 168 VSARPTAVNMKRAADSVKSSLSEWAKASPVN---TVKTRLIQLIESMLEKDISDNKAIGR 224
V +++ + S+ + + PV T + +
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK--------------------- 497
Query: 225 NGAQALIDLNPG-VSKLNVLTHCNTGSLATAEYGTALGVI 263
A ++D PG S L VLTH N GT + VI
Sbjct: 498 --ATHILDFGPGGASGLGVLTHRNKD-------GTGVRVI 528
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 1e-06
Identities = 46/286 (16%), Positives = 89/286 (31%), Gaps = 81/286 (28%)
Query: 11 KHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFP 70
++ K + + D +V+D ++I S + + I +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE--------------IDHIIMSKDA 60
Query: 71 DNELIQLIESMLEKDISDNKAIGRNGAQALID--LNPR----VSKLNVLTHCNTGSLATA 124
+ ++L ++L K Q ++ L +S + T S+ T
Sbjct: 61 VSGTLRLFWTLLSK--------QEEMVQKFVEEVLRINYKFLMSPIK--TEQRQPSMMTR 110
Query: 125 EYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKY-VG-----EKL-DYLVSARPT---A 174
Y ++ +D+ + DN KY V KL L+ RP
Sbjct: 111 MY----------------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 175 VN-M----KR--AADSVKSSLSE--------WAKASPVNTVKTRLIQLIESMLEKDISDN 219
++ + K A D S + W N+ +T L L L I N
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPN 212
Query: 220 KAIGRNGAQAL-IDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIR 264
+ + + + ++ ++L L L + Y L V+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRL-------LKSKPYENCLLVLL 251
Score = 34.8 bits (79), Expect = 0.030
Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 61/217 (28%)
Query: 16 ILDQLLLPHTSKLVDINNVE------DAYQAIKSMQVRGAPAI--AIVGCLGLVVDIKDK 67
++++L H LV+ E Y +K +++ A+ +IV + K
Sbjct: 407 VVNKL---HKYSLVEKQPKESTISIPSIYLELK-VKLENEYALHRSIVDHYNIP-----K 457
Query: 68 QFPDNELIQLIESMLEKDISDN---KAIG---RNGAQA-LIDLNPRV--------SKLNV 112
F ++LI D IG +N + L V K+
Sbjct: 458 TFDSDDLI--------PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-- 507
Query: 113 LTHCNTGSLATAEYGTALGVIRSLHGANKIVDIK--DKQFPDND-SLEKYVGEKLDYLVS 169
+ TA S+ N + +K DND E+ V LD+L
Sbjct: 508 ---RHDS--------TAWNASGSI--LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 170 ARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQ 206
+ K D ++ +L A+ + + +Q
Sbjct: 555 IEENLICSK-YTDLLRIALM--AEDEAIFEEAHKQVQ 588
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.9 bits (92), Expect = 2e-04
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 20/45 (44%)
Query: 10 EKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAI 54
EK +LK L L KL Y A S APA+AI
Sbjct: 18 EKQALKKLQASL-----KL---------Y-ADDS-----APALAI 42
Score = 28.0 bits (61), Expect = 2.4
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 178 KRAADSVKSSLSEWAKAS-PVNTVKTRLIQLIE 209
K+A +++SL +A S P +K +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT----ME 47
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 191
Score = 39.9 bits (94), Expect = 3e-04
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 271 KIGAAYCTETRPYNQGAR 288
++G + ETRPYNQG+R
Sbjct: 3 RMGHVFPLETRPYNQGSR 20
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 28.9 bits (64), Expect = 1.0
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 66 DKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAE 125
+ QF + I+L + +E + I + + + + VL HC G T
Sbjct: 49 NLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRT-- 106
Query: 126 YGTALGVIRSLHGAN 140
G +G +R L
Sbjct: 107 -GCLVGCLRKLQKWC 120
>2pih_A Protein YMCA; regulate community development, structural genomics,
PSI-2, protein structure initiative; 2.10A {Bacillus
subtilis} SCOP: a.281.1.1
Length = 151
Score = 28.0 bits (62), Expect = 2.0
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 60 LVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNG 96
++ + +D Q N+L+QL+ + +++ G
Sbjct: 87 VIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGG 123
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 28.0 bits (63), Expect = 3.8
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 60 LVVDIKDKQFPDN---ELIQLIESMLEKD 85
D++D D + L++ +L K
Sbjct: 227 FFTDLRDGIISDIFDKKEKTLLQKLLSKK 255
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 27.3 bits (60), Expect = 4.3
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 34 VEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEK 84
V+ A Q ++ + G PA A+ G + +++++ ++ +
Sbjct: 137 VQRASQLAEAAHIDGTPAFAVGGR--YMTSPVLAGNDYAGALKVVDQLIVQ 185
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 27.4 bits (60), Expect = 5.0
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 34 VEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEK 84
V + + + G PA+ + +V + + D E L+ +L
Sbjct: 133 VRRFDKQFQDSGLTGVPAVVVNNR--YLVQGQSVKSLD-EYFDLVNYLLTL 180
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 27.1 bits (59), Expect = 5.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 34 VEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEK 84
+E A + + QV G P + + G DI P+ E ++L + ++EK
Sbjct: 138 MEKAKKLAMAYQVTGVPTMVVNGK--YRFDIGSAGGPE-ETLKLADYLIEK 185
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 26.9 bits (58), Expect = 5.6
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 32 NNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEK 84
V++A + + P + G V I P ++ I +LEK
Sbjct: 136 KKVDNAKMLSEKSGISSVPTFVVNG--KYNVLIGGHDDPK-QIADTIRYLLEK 185
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 27.2 bits (60), Expect = 7.2
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 60 LVVDIKDKQFPDN------ELIQLIESMLEKD 85
++ D+++ +FP + +++ ML
Sbjct: 282 IITDVRNLKFPLLFTQKYPQEHMMVQDMLSPS 313
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A
{Bacillus cereus} PDB: 1ws1_A*
Length = 156
Score = 26.2 bits (59), Expect = 8.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 193 KASPVNTVKTRLIQLIESMLE 213
V +L++L++ M E
Sbjct: 17 PCERVINFDKKLVKLLKDMHE 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,150,767
Number of extensions: 249857
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 51
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.9 bits)