RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6709
(288 letters)
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 106 bits (264), Expect = 3e-27
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 53/186 (28%)
Query: 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV 62
SL+SI ++ LK++DQ LP ++++ NVE+ AIK + VRGAPA+ G G+ +
Sbjct: 1 SLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIAL 59
Query: 63 DIKDKQFPDNELIQ---------------------------------------------- 76
++++F D + ++
Sbjct: 60 AAREREFADVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALR 119
Query: 77 LIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSL 136
E + E+D+ N+ +G GA+ L D VLT+CN G LAT ++GTALGV+RS
Sbjct: 120 EAEKLAEEDVERNRKMGEYGAELLED------GDVVLTYCNAGRLATVDWGTALGVVRSA 173
Query: 137 HGANKI 142
K
Sbjct: 174 VEQGKE 179
Score = 64.4 bits (156), Expect = 2e-12
Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 22/167 (13%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
A YG AL ++++F D D L++++ + D+L S RPTAVN+
Sbjct: 51 AAGAYGIALA-------------AREREFADVDELKEHLKKAADFLASTRPTAVNLFVGI 97
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241
+ + K V VK ++ E + E+D+ N+ +G GA+ L D
Sbjct: 98 ERALN---AALKGESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLED------GDV 148
Query: 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
VLT+CN G LAT ++GTALGV+RS K ETRP NQG+R
Sbjct: 149 VLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSR 195
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 103 bits (258), Expect = 2e-26
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 37/180 (20%)
Query: 3 SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV 62
+++ + +SLK+LDQ LP + V+ E+ AIK M VRGAPAI + G V+
Sbjct: 2 KTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVL 61
Query: 63 DIKD------KQFPDNELIQLIES--------------------------MLEKDISDNK 90
++D + L + + E ++
Sbjct: 62 GLRDYKTGSLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEILENEAL 121
Query: 91 AIGRNGAQALIDLNPRVSKL-----NVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDI 145
+ + + ++L +LTHCN G+LAT +YGTALGVIR+ + K + +
Sbjct: 122 KMAYEDIEVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRV 181
Score = 62.4 bits (151), Expect = 7e-12
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
A +G LG+ SL ++ + + L RPTAVN+ A
Sbjct: 53 VAAAFGYVLGLRDY----------------KTGSLTDWMKQVKETLARTRPTAVNLFWAL 96
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN 241
+ ++ + + + + L M +DI NKAIG+NGAQ + D
Sbjct: 97 NRMEKV---FFENADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIKD------GST 147
Query: 242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQG 286
+LTHCN G+LAT +YGTALGVIR+ + K + ETRPY QG
Sbjct: 148 ILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQG 192
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
[TaxId: 5664]}
Length = 374
Score = 96.8 bits (240), Expect = 1e-23
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 55/201 (27%)
Query: 1 MKSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGL 60
+L+SI Y SL++LDQ LP + D+ VED + AIK M+VRGAPAIA+ LG+
Sbjct: 6 HATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGI 65
Query: 61 VVDIKDKQFPDN-----ELIQLIE------------------------------------ 79
V + K E+ +
Sbjct: 66 AVATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAA 125
Query: 80 ------------SMLEKDISDNKAIGRNGAQALIDLNPRVSK--LNVLTHCNTGSLATAE 125
++ D++ N+ I R+GA ++ + +++LT CNTG+LAT+
Sbjct: 126 AEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSR 185
Query: 126 YGTALGVIRSLHGANKIVDIK 146
YGTALGV+R L K+ +
Sbjct: 186 YGTALGVVRQLFYDGKLERVY 206
Score = 79.4 bits (195), Expect = 1e-17
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 11/169 (6%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
+A G A+ R + + ++ ++ D+++++RPTAVN+
Sbjct: 59 VSAALGIAVATQR---------KAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCL 109
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDL--NPGVSK 239
+K+ + + V ++L E++ D++ N+ I R+GA ++ G K
Sbjct: 110 RDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDK 169
Query: 240 LNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
+++LT CNTG+LAT+ YGTALGV+R L K+ Y ETRP+NQGAR
Sbjct: 170 VSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGAR 218
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
isomerase Ypr118W {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 402
Score = 89.1 bits (220), Expect = 8e-21
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 3 SLQSIIY-----EKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGC 57
SL++I++ E S+K+LDQLLLP+T+K V I+ ++D Y IKSMQVRGAPAIAIVG
Sbjct: 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGS 61
Query: 58 LGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNP 105
L ++ +++ + + + S++ + K + L+ P
Sbjct: 62 LSVLTEVQLIKHNPTSDVATLYSLVNWE--STKTVLNKRLDFLLSSRP 107
Score = 86.4 bits (213), Expect = 7e-20
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 15/178 (8%)
Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
++ + + +S + + ++LD+L+S+RPTAVN+ +
Sbjct: 58 IVGSLSVLTE-VQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSL 116
Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDL---NPGVS 238
+K+ +S + L + ++++D+++N +G NGA+ LID+ +
Sbjct: 117 VEIKNI---LKSSSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKD 173
Query: 239 KLNVLTHCNTGSLATAEYGTALGVIRSLH--------GANKIGAAYCTETRPYNQGAR 288
+ VLT CNTGSLAT+ YGTALGVIRSL ++G + ETRPYNQG+R
Sbjct: 174 EFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCPRMGHVFPLETRPYNQGSR 231
Score = 49.5 bits (117), Expect = 2e-07
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 53 AIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPR---VSK 109
++V ++ D + D L + ++++D+++N +G NGA+ LID+ + +
Sbjct: 115 SLVEIKNILKSSSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKDE 174
Query: 110 LNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDK 148
VLT CNTGSLAT+ YGTALGVIRSL + K
Sbjct: 175 FAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCP 213
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 274
Score = 67.7 bits (165), Expect = 9e-14
Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 25/137 (18%)
Query: 152 DNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESM 211
D LE + E + +V P+ ++ A + PV + L
Sbjct: 39 DESLLEDAIMELREEVVKVNPSMASLYNLA-----------RFIPVTNRRDILKSRALEF 87
Query: 212 LEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANK 271
L + + + GAQ + D ++TH T L +IR+ K
Sbjct: 88 LRRMEEAKRELASIGAQLIDD------GDVIITHSF--------SSTVLEIIRTAKERKK 133
Query: 272 IGAAYCTETRPYNQGAR 288
TE+ P +G
Sbjct: 134 RFKVILTESSPDYEGLH 150
Score = 62.7 bits (152), Expect = 4e-12
Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 49/147 (33%)
Query: 34 VEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNE-------------------- 73
V + + +K +++GA +A G + ++ E
Sbjct: 5 VLEILREMKRERIKGASWLAKKGAEAFLTLAEELDESLLEDAIMELREEVVKVNPSMASL 64
Query: 74 ---------------LIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNT 118
L L + + + GAQ + D ++TH
Sbjct: 65 YNLARFIPVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDD------GDVIITHSF- 117
Query: 119 GSLATAEYGTALGVIRSLHGANKIVDI 145
T L +IR+ K +
Sbjct: 118 -------SSTVLEIIRTAKERKKRFKV 137
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Vibrio cholerae [TaxId: 666]}
Length = 181
Score = 28.8 bits (63), Expect = 0.48
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 31 INNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEK 84
+ V + + + G PA+ + +V + + D E L+ +L
Sbjct: 130 DSMVRRFDKQFQDSGLTGVPAVVVNN--RYLVQGQSVKSLD-EYFDLVNYLLTL 180
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 26.0 bits (56), Expect = 4.1
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 42 KSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESML 82
+S+ + P+ A++G G V I + + + LI
Sbjct: 100 QSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN 140
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 26.1 bits (56), Expect = 4.2
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 32 NNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDN---ELIQLIESMLEK 84
+ V +A +Q+RG PA+ + G L D D + ++ + EK
Sbjct: 133 SLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEK 188
>d1mg7a2 d.58.26.6 (A:188-380) Early switch protein XOL-1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 193
Score = 25.3 bits (55), Expect = 8.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 59 GLVVDIKDKQFPDNELIQLIESMLEKDISDN 89
G++V +K F D+ELI+ I + + +
Sbjct: 121 GILVALKKDSFFDDELIEKIAIAIATESRQS 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 970,321
Number of extensions: 42522
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 18
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.4 bits)