Query psy6711
Match_columns 135
No_of_seqs 127 out of 956
Neff 4.5
Searched_HMMs 46136
Date Sat Aug 17 01:04:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0182 Predicted translation 100.0 5E-30 1.1E-34 218.0 5.9 85 3-87 245-335 (346)
2 KOG1468|consensus 99.9 2.4E-27 5.2E-32 199.7 4.2 86 4-89 251-345 (354)
3 PRK05720 mtnA methylthioribose 99.9 6.1E-27 1.3E-31 199.4 5.5 88 2-89 241-334 (344)
4 PRK06371 translation initiatio 99.9 8.7E-27 1.9E-31 197.9 5.4 89 2-90 231-325 (329)
5 PRK06036 translation initiatio 99.9 4.9E-26 1.1E-30 193.8 5.7 87 2-89 241-333 (339)
6 PRK08334 translation initiatio 99.9 5.3E-26 1.1E-30 194.9 5.7 87 2-89 254-346 (356)
7 PRK05772 translation initiatio 99.9 7.6E-26 1.7E-30 194.2 6.0 87 2-89 262-354 (363)
8 TIGR00512 salvage_mtnA S-methy 99.9 1.1E-25 2.5E-30 191.0 6.0 85 2-86 241-331 (331)
9 TIGR00524 eIF-2B_rel eIF-2B al 99.9 5.6E-25 1.2E-29 184.1 6.0 85 2-86 213-303 (303)
10 PRK08535 translation initiatio 99.9 9.3E-25 2E-29 182.7 5.5 87 2-89 204-296 (310)
11 TIGR00511 ribulose_e2b2 ribose 99.9 8.1E-25 1.8E-29 182.5 5.1 87 2-89 199-291 (301)
12 PRK08335 translation initiatio 99.9 1.3E-22 2.8E-27 168.7 6.2 75 2-88 193-273 (275)
13 PF01008 IF-2B: Initiation fac 99.8 9.2E-22 2E-26 159.3 4.0 85 2-86 192-282 (282)
14 KOG1465|consensus 99.8 1.2E-21 2.6E-26 166.3 3.6 88 2-90 246-339 (353)
15 COG1184 GCD2 Translation initi 99.8 1.3E-20 2.9E-25 158.8 4.6 88 1-92 202-295 (301)
16 PRK06372 translation initiatio 99.7 4.2E-17 9.1E-22 134.6 5.7 79 2-89 167-251 (253)
17 KOG1466|consensus 99.5 8.1E-15 1.8E-19 123.1 1.3 82 2-89 214-304 (313)
18 KOG1467|consensus 98.8 5.7E-10 1.2E-14 100.0 0.1 94 3-96 444-551 (556)
19 PF00391 PEP-utilizers: PEP-ut 51.2 10 0.00023 25.5 1.6 19 10-28 43-61 (80)
20 PRK05634 nucleosidase; Provisi 48.8 16 0.00035 28.6 2.5 18 9-26 134-151 (185)
21 TIGR01704 MTA/SAH-Nsdase 5'-me 39.4 27 0.00058 27.7 2.5 18 9-26 174-191 (228)
22 cd02982 PDI_b'_family Protein 36.5 30 0.00065 22.9 2.0 33 102-134 36-75 (103)
23 TIGR03468 HpnG hopanoid-associ 35.9 34 0.00074 27.0 2.6 19 9-27 134-152 (212)
24 KOG0388|consensus 34.0 22 0.00047 35.1 1.4 23 11-33 606-630 (1185)
25 KOG2248|consensus 32.7 18 0.00039 32.1 0.5 21 107-127 212-232 (380)
26 PRK14697 bifunctional 5'-methy 32.3 41 0.00089 26.9 2.5 18 9-26 173-190 (233)
27 PRK07077 hypothetical protein; 31.5 44 0.00094 27.6 2.6 18 9-26 145-162 (238)
28 PRK06714 S-adenosylhomocystein 28.3 52 0.0011 26.7 2.5 18 9-26 174-191 (236)
29 TIGR01705 MTA/SAH-nuc-hyp 5'-m 27.1 58 0.0013 26.6 2.6 18 9-26 150-167 (212)
30 cd02417 Peptidase_C39_likeA A 26.6 46 0.00099 22.7 1.7 24 3-26 3-26 (121)
31 PRK07164 5'-methylthioadenosin 25.8 63 0.0014 26.0 2.5 18 9-26 163-180 (218)
32 PF04424 DUF544: Protein of un 25.8 25 0.00054 25.9 0.2 30 67-100 62-92 (121)
33 PRK05584 5'-methylthioadenosin 25.6 64 0.0014 25.1 2.5 18 9-26 175-192 (230)
34 PRK08236 hypothetical protein; 25.5 63 0.0014 25.8 2.5 18 9-26 163-180 (212)
35 PRK06026 5'-methylthioadenosin 24.9 66 0.0014 26.2 2.5 18 9-26 150-167 (212)
36 PRK10342 glycerate kinase I; P 24.6 70 0.0015 28.4 2.8 26 9-34 305-330 (381)
37 COG1929 Glycerate kinase [Carb 24.6 58 0.0013 29.2 2.3 26 10-35 306-331 (378)
38 COG0775 Pfs Nucleoside phospho 24.6 65 0.0014 26.1 2.4 18 9-26 178-195 (234)
39 PRK09932 glycerate kinase II; 24.4 69 0.0015 28.5 2.7 25 9-33 305-329 (381)
40 PF09624 DUF2393: Protein of u 23.9 69 0.0015 23.7 2.3 37 68-106 60-96 (149)
41 PRK06698 bifunctional 5'-methy 23.8 67 0.0015 28.1 2.5 18 9-26 173-190 (459)
42 TIGR00045 glycerate kinase. Th 22.9 75 0.0016 28.1 2.6 26 9-34 304-329 (375)
43 TIGR03664 fut_nucase futalosin 22.5 77 0.0017 25.2 2.4 18 9-26 173-190 (222)
44 PF03796 DnaB_C: DnaB-like hel 22.0 67 0.0015 25.5 2.0 23 10-32 160-182 (259)
45 cd03002 PDI_a_MPD1_like PDI fa 22.0 70 0.0015 21.3 1.9 12 109-120 49-60 (109)
46 PRK03892 ribonuclease P protei 21.7 45 0.00098 27.7 1.0 31 15-56 161-191 (216)
47 PF01048 PNP_UDP_1: Phosphoryl 21.7 82 0.0018 24.1 2.4 20 8-27 176-195 (234)
48 PRK08666 5'-methylthioadenosin 21.0 85 0.0018 25.6 2.5 20 8-27 184-203 (261)
49 TIGR01139 cysK cysteine syntha 20.3 91 0.002 25.5 2.5 40 7-46 65-110 (298)
No 1
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5e-30 Score=217.99 Aligned_cols=85 Identities=31% Similarity=0.502 Sum_probs=80.8
Q ss_pred ccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cce
Q psy6711 3 IKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HSG 76 (135)
Q Consensus 3 i~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------isg 76 (135)
+-||||||++|++||||||||||+||.+|||+...+|++|+||||+|+||+.++|.+++|+++++|||||| |+|
T Consensus 245 vaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~g~riap~~v~~yNPAFDvTP~~lItg 324 (346)
T COG0182 245 VANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVGGVRIAPEGVEAYNPAFDVTPPELITG 324 (346)
T ss_pred chhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeeccEEeCCCCccccCccccCChHHhcce
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eeecCCCCCCc
Q psy6711 77 SINKVEDLPEM 87 (135)
Q Consensus 77 ~It~v~~~~~~ 87 (135)
+|||=|=+.|+
T Consensus 325 IITEkGv~~p~ 335 (346)
T COG0182 325 IITEKGVFTPP 335 (346)
T ss_pred eeeccceecCc
Confidence 99995546665
No 2
>KOG1468|consensus
Probab=99.93 E-value=2.4e-27 Score=199.70 Aligned_cols=86 Identities=41% Similarity=0.618 Sum_probs=80.8
Q ss_pred cchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCcccccccc---CeeecCCCceeEeeeec------c
Q psy6711 4 KPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVA---GIHVAASDCGSKGTFQS------H 74 (135)
Q Consensus 4 ~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~---g~~iap~~v~V~NPAFD------i 74 (135)
-||+||||+|++||||||||||+||.+++|...++|++|.||||+|.|++++. |.+++++++.||||||| |
T Consensus 251 ANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~gg~~v~Iaapgi~vwnPAFDvTPa~LI 330 (354)
T KOG1468|consen 251 ANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVTGGEGVRIAAPGINVWNPAFDVTPAELI 330 (354)
T ss_pred hhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeecCCcceEecCCCCCccCccccCCHHHHH
Confidence 38999999999999999999999999999999999999999999999999999 77899999999999999 9
Q ss_pred ceeeecCCCCCCcee
Q psy6711 75 SGSINKVEDLPEMSI 89 (135)
Q Consensus 75 sg~It~v~~~~~~~i 89 (135)
+|+|||-|-|+|-+-
T Consensus 331 tgIiTe~g~f~~~~~ 345 (354)
T KOG1468|consen 331 TGIITEKGVFTPEEL 345 (354)
T ss_pred HHHhhhccccChHHh
Confidence 999999776777553
No 3
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=99.93 E-value=6.1e-27 Score=199.42 Aligned_cols=88 Identities=31% Similarity=0.457 Sum_probs=85.1
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+.+++|++++||+|+|+|++.+.|.+++|++++++||+|| ||
T Consensus 241 ~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt 320 (344)
T PRK05720 241 DVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVRIAPEGVKVYNPAFDVTPAELIT 320 (344)
T ss_pred CEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCC
Confidence 589999999999999999999999999999999999999999999999999999998889999999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|.++|+++
T Consensus 321 ~iITE~Gv~~p~~~ 334 (344)
T PRK05720 321 GIITEKGIVAPPDT 334 (344)
T ss_pred EEEcCCCccCccHH
Confidence 99999999999976
No 4
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.93 E-value=8.7e-27 Score=197.92 Aligned_cols=89 Identities=25% Similarity=0.374 Sum_probs=85.7
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+||||||||++|||+....|++|+||+|+|+|++.+.|.+++|++++++||+|| |+
T Consensus 231 ~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~g~~~~p~~~~v~Np~FDvTP~elIt 310 (329)
T PRK06371 231 DFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEINGCRIGPQESHARNPAFDVTPNEYVT 310 (329)
T ss_pred CEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccCCeecCCCCccccCcCccCCCHHHCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeeecCCCCCCceeE
Q psy6711 76 GSINKVEDLPEMSIV 90 (135)
Q Consensus 76 g~It~v~~~~~~~i~ 90 (135)
++|||.|.++|++|.
T Consensus 311 ~iITE~Gv~~p~~i~ 325 (329)
T PRK06371 311 GFITEYGIFKPNELW 325 (329)
T ss_pred EEEccCCccChHHhh
Confidence 999999999999873
No 5
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.92 E-value=4.9e-26 Score=193.78 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=83.0
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+....| +|+||+|+|+|++.+.|.+++|++++++||+|| |+
T Consensus 241 Gv~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt 319 (339)
T PRK06036 241 AVFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCGKTQIAPKDVPVYNPAFDATPMENVT 319 (339)
T ss_pred CeehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhccccCcccCCCCceeeCcccccCCHHHCC
Confidence 78999999999999999999999999999999999888 899999999999999988889999999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|-+.|++.
T Consensus 320 ~iITE~Gv~~P~~~ 333 (339)
T PRK06036 320 AIITEKGVFYPPFL 333 (339)
T ss_pred EEEccCCcccCCcc
Confidence 99999999988865
No 6
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=99.92 E-value=5.3e-26 Score=194.90 Aligned_cols=87 Identities=28% Similarity=0.364 Sum_probs=83.0
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+||||||||++|+|+.++++++++||+|+|+||+.+.|.+++| +++++||+|| |+
T Consensus 254 ~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~~~~~~~-~~~v~NPaFDvTPp~lIt 332 (356)
T PRK08334 254 DFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGCRIAP-DVDVYNPAFDVTPHKYLT 332 (356)
T ss_pred CEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheeccCcccCC-CcceecccccCCCHHHCC
Confidence 6899999999999999999999999999999999999999999999999999998887776 8999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|.+.|++.
T Consensus 333 ~iITE~Gv~~P~~~ 346 (356)
T PRK08334 333 GIITDRGVVWPPFE 346 (356)
T ss_pred EEEcCCCccCCchH
Confidence 99999999999876
No 7
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.92 E-value=7.6e-26 Score=194.23 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=82.7
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+.++. ++|+||||+|+|++.+.|.+++|++++++||+|| |+
T Consensus 262 ~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~-~~i~ieer~p~ev~~~~~~~~~~~~~~v~Np~FDvTP~~lIt 340 (363)
T PRK05772 262 HVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDV-NDVKIEERDPNEVRTIRGVPITPEDVNVYNPVFDVTPPKYIT 340 (363)
T ss_pred CEeehhhhHHHHHHHHHhCCCEEEEccccccCccccc-cccccccCCHHHhcccCCceecCCCceeeccCccCCCHHHCC
Confidence 5889999999999999999999999999999999988 7999999999999999999889999999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|-+.|++-
T Consensus 341 ~iITE~Gv~~p~~~ 354 (363)
T PRK05772 341 GIITEKGIIYPPFH 354 (363)
T ss_pred EEEccCCccCCchH
Confidence 99999999988754
No 8
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=99.92 E-value=1.1e-25 Score=190.99 Aligned_cols=85 Identities=36% Similarity=0.536 Sum_probs=81.1
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+.+++|++++||+|+|+|++.+.|..++|++++++||+|| |+
T Consensus 241 ~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~g~~~~~~~~~v~Np~FD~TP~~lIt 320 (331)
T TIGR00512 241 DTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVGGVRIAPPGIDVWNPAFDVTPAELIT 320 (331)
T ss_pred CEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCC
Confidence 589999999999999999999999999999999999999999999999999999998888999999999999 99
Q ss_pred eeeecCCCCCC
Q psy6711 76 GSINKVEDLPE 86 (135)
Q Consensus 76 g~It~v~~~~~ 86 (135)
++|||.|-+.|
T Consensus 321 ~iITe~Gv~~p 331 (331)
T TIGR00512 321 GIITEKGVITP 331 (331)
T ss_pred EEEccCCccCC
Confidence 99999887654
No 9
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=99.91 E-value=5.6e-25 Score=184.15 Aligned_cols=85 Identities=28% Similarity=0.420 Sum_probs=81.5
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+.+++|+++++|+|+|+|++.+.|.+.+|++++++||+|| |+
T Consensus 213 ~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~~~~~~~~~~~v~np~fD~TP~~lIt 292 (303)
T TIGR00524 213 DVANKIGTYQLAVLAKEFRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGVRIAPLGVKVYNPAFDITPHDLID 292 (303)
T ss_pred CEeEhhhHHHHHHHHHHhCCCEEEecccccccCCCCCccccccccCCHHHhccccCcccCCCCceeecccccCCCHHHCC
Confidence 589999999999999999999999999999999999999999999999999999888888899999999999 99
Q ss_pred eeeecCCCCCC
Q psy6711 76 GSINKVEDLPE 86 (135)
Q Consensus 76 g~It~v~~~~~ 86 (135)
++|||.|-++|
T Consensus 293 ~iiTe~Gv~~p 303 (303)
T TIGR00524 293 AIITEKGIITP 303 (303)
T ss_pred EEEcCCCccCc
Confidence 99999998876
No 10
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.90 E-value=9.3e-25 Score=182.65 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=81.4
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++||++.++.+++++||+|+++|++... ....+++++++||+|| |+
T Consensus 204 ~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~-~~~~~~~v~v~np~fD~tP~~lIt 282 (310)
T PRK08535 204 AVINKIGTSQIALAAHEARVPFMVAAETYKFSPKTLLGELVEIEERDPTEVLPEE-ILAKLPGVKVRNPAFDVTPPEYID 282 (310)
T ss_pred CEEeHHhHHHHHHHHHHhCCCEEEecccceecCCCCCCCcceecccCHHHhcccc-cccCCCCceeeccCcccCCHHHCC
Confidence 6899999999999999999999999999999999999999999999999999773 3356789999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|.+||+++
T Consensus 283 ~iiTe~Gi~~ps~v 296 (310)
T PRK08535 283 AIITEIGAIPPEMA 296 (310)
T ss_pred EEEeCCCcCChHHH
Confidence 99999999999887
No 11
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=99.90 E-value=8.1e-25 Score=182.55 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=82.2
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++||++.++.+++++||+|+|+|++.+.+. ..+++++++||+|| |+
T Consensus 199 ~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~~~-~~~~~~~v~np~fD~tP~~lIt 277 (301)
T TIGR00511 199 ALINKIGTSQLALAAREARVPFMVAAETYKFHPKTITGELVEIEERDPTEVLDEEDL-KQLGAVKVRNPAFDVTPAEYID 277 (301)
T ss_pred CEEEHHhHHHHHHHHHHhCCCEEEEcccceecCCCCCCCcccccccCHHHhccccCc-cCCCCccccCcceecCCHHHCC
Confidence 589999999999999999999999999999999999999999999999999988765 46678999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|.+||+++
T Consensus 278 ~iITe~Gi~~p~~i 291 (301)
T TIGR00511 278 AIITEVGQIPPEMA 291 (301)
T ss_pred EEEeCCCcCCcHHH
Confidence 99999999999887
No 12
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=99.87 E-value=1.3e-22 Score=168.74 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=69.7
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+.+.++ +++||||++ .+++++++||+|| |+
T Consensus 193 ~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~~~~~~~-~i~ieer~~-----------~~~~~~v~Np~FDvTP~~lIt 260 (275)
T PRK08335 193 YVVNKAGTYLLALACHDNGVPFYVAAETFKFHPELKSE-EVELVERPY-----------ARQGHRVRNVLFDVTPWKYVR 260 (275)
T ss_pred CEeehhhHHHHHHHHHHcCCCEEEECccceecccCCCC-CccccccCC-----------CCCCceecCcCccCCCHHHCC
Confidence 58999999999999999999999999999999999998 899999976 3688999999999 99
Q ss_pred eeeecCCCCCCce
Q psy6711 76 GSINKVEDLPEMS 88 (135)
Q Consensus 76 g~It~v~~~~~~~ 88 (135)
++|||.|-+.|+.
T Consensus 261 ~iITE~Gv~~p~~ 273 (275)
T PRK08335 261 GIITELGILVPPR 273 (275)
T ss_pred EEEccCCccCCCC
Confidence 9999999987764
No 13
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=99.84 E-value=9.2e-22 Score=159.28 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=72.5
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+|+++||++.++.+++..+|+|+++|++...+....+++++++||.|| |+
T Consensus 192 ~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e~~~~~~v~~~~~~~~~~~~v~~~~p~~D~tP~~~It 271 (282)
T PF01008_consen 192 GVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNELRDPQEVLPFDGSSIVPENVDVINPLFDYTPPDLIT 271 (282)
T ss_dssp -EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-B--THHHHEETTEEESTTTEEEE-BSEEEEEGGG-S
T ss_pred CEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhhccccceeeccCCcccccceeeccCccEeecCHHHCC
Confidence 499999999999999999999999999999999999999999999999999999998888889999999999 99
Q ss_pred eeeecCCCCCC
Q psy6711 76 GSINKVEDLPE 86 (135)
Q Consensus 76 g~It~v~~~~~ 86 (135)
++|||.|.++|
T Consensus 272 ~~iTe~G~~~P 282 (282)
T PF01008_consen 272 LIITELGILPP 282 (282)
T ss_dssp EEEETTEEE-C
T ss_pred EEEcCCCCCCc
Confidence 99999988877
No 14
>KOG1465|consensus
Probab=99.83 E-value=1.2e-21 Score=166.35 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=82.1
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+++..|+|++|++||||.+||||+||+||++|.+++..|.++|.|+|+|++++.... ....++++||+|| |+
T Consensus 246 gl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e~~-~~~~~~v~nP~fDyvppeLVt 324 (353)
T KOG1465|consen 246 GLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSEGD-PAGRVDVLNPAFDYVPPELVT 324 (353)
T ss_pred CeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccccC-cccceeecccccccCChhhee
Confidence 7899999999999999999999999999999999999999999999999999997752 2257999999999 99
Q ss_pred eeeecCCCCCCceeE
Q psy6711 76 GSINKVEDLPEMSIV 90 (135)
Q Consensus 76 g~It~v~~~~~~~i~ 90 (135)
.||||+||++|||+-
T Consensus 325 LFIsNtgg~~PSyvy 339 (353)
T KOG1465|consen 325 LFISNTGGVAPSYVY 339 (353)
T ss_pred EEEecCCCCChHHHH
Confidence 999999999999983
No 15
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.3e-20 Score=158.84 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------c
Q psy6711 1 MGIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------H 74 (135)
Q Consensus 1 ~Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------i 74 (135)
.+|+||+|||+||++||++++||||||+++||.+.++.+....+|+|+++|+....+. .+.+++||+|| |
T Consensus 202 G~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~p~~~~~~~~~~~~~~~~e~~~~~~~----~~~~v~Np~fD~TP~~~I 277 (301)
T COG1184 202 GALVNKIGTSPLALAARELRVPFYVVAESYKFVPKTLLDTLVEIELRDPLEVAREEPL----GNLKVRNPAFDVTPPEYI 277 (301)
T ss_pred CcEEeccchHHHHHHHHHhCCCEEEEeeeecccccccCCCcceeeccChhhccccCcc----cCccccccccCCCcHHHh
Confidence 3789999999999999999999999999999999999999999999999999844332 16899999999 9
Q ss_pred ceeeecCCCCCCceeEee
Q psy6711 75 SGSINKVEDLPEMSIVEL 92 (135)
Q Consensus 75 sg~It~v~~~~~~~i~~~ 92 (135)
+++|||.|..||+.+.++
T Consensus 278 d~iITe~G~~pp~~~~~i 295 (301)
T COG1184 278 DAIITELGIIPPSSIYRI 295 (301)
T ss_pred heeeecCCCCCchhHHHH
Confidence 999999999999988443
No 16
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.68 E-value=4.2e-17 Score=134.64 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=62.7
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+++++||++..+.......+.++ ....+++++++||+|| |+
T Consensus 167 ~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~~~~~~~---------~~~~~~~l~v~Np~FD~TPpelI~ 237 (253)
T PRK06372 167 GLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTYPNFKNHP---------CSEWNIDIPCINRYFDKTPPDLID 237 (253)
T ss_pred CEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCcccccccccccc---------cccCCCCCceeCcCcCCCCHHHCC
Confidence 68999999999999999999999999999999875543211111110 1123568999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|.++|+.+
T Consensus 238 ~iITE~Gi~~pssV 251 (253)
T PRK06372 238 YYINENGFVKPSDV 251 (253)
T ss_pred EEEcCCCccccccC
Confidence 99999999999876
No 17
>KOG1466|consensus
Probab=99.48 E-value=8.1e-15 Score=123.11 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=70.1
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCC-CceeeeecCccccccccCeeecCC--CceeEeeeec-----
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNG-DAIVIEERPSQEMTHVAGIHVAAS--DCGSKGTFQS----- 73 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g-~dI~IEeR~p~EVl~~~g~~iap~--~v~V~NPAFD----- 73 (135)
||+|++||||+|++||+.++||||+|+++||.+.+|.+ +|+|.+.|+-+ ..+. .|+ ++...+|.-|
T Consensus 214 GIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~~-----f~~~-~~~~~~~~~e~p~vDYTpPe 287 (313)
T KOG1466|consen 214 GIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPFK-----FSRP-VPEREDVEREHPTVDYTPPE 287 (313)
T ss_pred ceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCcccccccccCCcc-----cCCC-CCcHHhhhhcCCCcccChHH
Confidence 89999999999999999999999999999999999975 67888766544 2222 233 7889999999
Q ss_pred -cceeeecCCCCCCcee
Q psy6711 74 -HSGSINKVEDLPEMSI 89 (135)
Q Consensus 74 -isg~It~v~~~~~~~i 89 (135)
+++.+||+|-+.||-+
T Consensus 288 yiTlL~TDLGvltPSaV 304 (313)
T KOG1466|consen 288 YLTLLFTDLGVLTPSAV 304 (313)
T ss_pred HHHHHHhhccccChhhh
Confidence 9999999999999765
No 18
>KOG1467|consensus
Probab=98.83 E-value=5.7e-10 Score=99.99 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=81.3
Q ss_pred ccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCe--ee------cCCCceeEeeeec-
Q psy6711 3 IKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGI--HV------AASDCGSKGTFQS- 73 (135)
Q Consensus 3 i~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~--~i------ap~~v~V~NPAFD- 73 (135)
+-+++||.++|++|++|+||++||+++|||.-....+.-..+|..+|+.+...+|+ +. .-.+++.+|=.+|
T Consensus 444 vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~ 523 (556)
T KOG1467|consen 444 VYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDV 523 (556)
T ss_pred hhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeecc
Confidence 45789999999999999999999999999999999887789999999988888883 11 2235788999999
Q ss_pred -----cceeeecCCCCCCceeEeeccee
Q psy6711 74 -----HSGSINKVEDLPEMSIVELEDVK 96 (135)
Q Consensus 74 -----isg~It~v~~~~~~~i~~~~~~~ 96 (135)
||.+|||.|-+||+++-.+++.|
T Consensus 524 TPpelIs~vVTe~g~lp~TSVPvilr~~ 551 (556)
T KOG1467|consen 524 TPPELISAVVTELGMLPPTSVPVILREK 551 (556)
T ss_pred CcHHHHHHHHhhccccCCccchHHHhhh
Confidence 99999999999999987666665
No 19
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=51.17 E-value=10 Score=25.55 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.7
Q ss_pred HHHHHHhhhCCCcEEEecc
Q psy6711 10 LQIAVSAKHHKVPFFIAAP 28 (135)
Q Consensus 10 y~LALaAk~h~VPFyVaAP 28 (135)
.-.|++||.++||.++-++
T Consensus 43 SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 43 SHAAILARELGIPAIVGVG 61 (80)
T ss_dssp SHHHHHHHHTT-EEEESTT
T ss_pred chHHHHHHHcCCCEEEeec
Confidence 4578999999999999975
No 20
>PRK05634 nucleosidase; Provisional
Probab=48.80 E-value=16 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=16.3
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|..|+.++|||++.
T Consensus 134 ~aAva~va~~~~vPf~~i 151 (185)
T PRK05634 134 GYAVAAVAAEFGVPCRLV 151 (185)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 578999999999999986
No 21
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=39.41 E-value=27 Score=27.66 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=16.2
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|.+|+.+++||++.
T Consensus 174 ~aAva~va~~~~ip~~~i 191 (228)
T TIGR01704 174 ATAIAHVCHNFNVPFVVV 191 (228)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 578899999999999986
No 22
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=36.54 E-value=30 Score=22.90 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=23.8
Q ss_pred cceeeccccceEEEechhh---hhhhcCC----CCeeeee
Q psy6711 102 HTIHKMSARINIIFSDCDK---FMTNYGK----PPSIFFF 134 (135)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~ 134 (135)
..+.++.++..|+.+|+|. ++..||. .|++.+|
T Consensus 36 ~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~ 75 (103)
T cd02982 36 EVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAII 75 (103)
T ss_pred HHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEE
Confidence 3456677899999999998 6666664 4665543
No 23
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=35.93 E-value=34 Score=27.00 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.+|.+|++++|||.++-
T Consensus 134 saava~va~~~gip~~~ir 152 (212)
T TIGR03468 134 SGAVAAVAAAAGLPFAVIR 152 (212)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5778999999999999873
No 24
>KOG0388|consensus
Probab=34.02 E-value=22 Score=35.15 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=19.2
Q ss_pred HHHHHhhhCCC--cEEEeccCCccC
Q psy6711 11 QIAVSAKHHKV--PFFIAAPWTSID 33 (135)
Q Consensus 11 ~LALaAk~h~V--PFyVaAP~stfD 33 (135)
-+|-+|..|+| ||.|+||.+|++
T Consensus 606 vlAhLaE~~nIwGPFLVVtpaStL~ 630 (1185)
T KOG0388|consen 606 VLAHLAETHNIWGPFLVVTPASTLH 630 (1185)
T ss_pred HHHHHHHhccCCCceEEeehHHHHh
Confidence 46677778998 899999999876
No 25
>KOG2248|consensus
Probab=32.70 E-value=18 Score=32.07 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.1
Q ss_pred ccccceEEEechhhhhhhcCC
Q psy6711 107 MSARINIIFSDCDKFMTNYGK 127 (135)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ 127 (135)
.+++++++++|||-+.|..|.
T Consensus 212 v~~~~~i~AlDCEm~~te~g~ 232 (380)
T KOG2248|consen 212 VSKSPNIFALDCEMVVTENGL 232 (380)
T ss_pred CCCCCCeEEEEeeeeeeccce
Confidence 678999999999999999983
No 26
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=32.31 E-value=41 Score=26.92 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|.+|+.++|||++.
T Consensus 173 ~aAva~v~~~~~vpfl~i 190 (233)
T PRK14697 173 GAAIGHVAYINEVPFLVI 190 (233)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 567899999999999986
No 27
>PRK07077 hypothetical protein; Provisional
Probab=31.48 E-value=44 Score=27.58 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.7
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|-.|+.++|||+++
T Consensus 145 saAvA~va~~~giPf~vi 162 (238)
T PRK07077 145 SHIAAAFAAARGLPFAAC 162 (238)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 467888999999999986
No 28
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=28.34 E-value=52 Score=26.66 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=16.1
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
+..+|.+|+.++|||++.
T Consensus 174 ~aAvA~vc~~~~vP~l~I 191 (236)
T PRK06714 174 VAAFAYVCQINKKPFLCL 191 (236)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 568899999999999986
No 29
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=27.07 E-value=58 Score=26.59 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=16.4
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|..|+.++|||.+.
T Consensus 150 ~aAia~vc~~~~vpf~~i 167 (212)
T TIGR01705 150 TFACLRACQLFDVPLIGL 167 (212)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999999986
No 30
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=26.60 E-value=46 Score=22.74 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=18.7
Q ss_pred ccchhhHHHHHHHhhhCCCcEEEe
Q psy6711 3 IKPIKWNLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 3 i~aKiGTy~LALaAk~h~VPFyVa 26 (135)
-+...|-..++.+|++|++|+=..
T Consensus 3 ~~~~~~l~~l~~i~~~~g~~~~~~ 26 (121)
T cd02417 3 TKPDSGLLALVLLARYHGIAADPE 26 (121)
T ss_pred CccccHHHHHHHHHHHcCCCCCHH
Confidence 345677888999999999997543
No 31
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=25.84 E-value=63 Score=26.00 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=16.0
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
+..+|.+|+.+++||++.
T Consensus 163 ~aAiaqv~~~~~vpf~~i 180 (218)
T PRK07164 163 AFALAQVCFKNKVKFYCI 180 (218)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 567899999999999986
No 32
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=25.76 E-value=25 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=21.9
Q ss_pred eEeeeec-cceeeecCCCCCCceeEeecceeeecC
Q psy6711 67 SKGTFQS-HSGSINKVEDLPEMSIVELEDVKIIQD 100 (135)
Q Consensus 67 V~NPAFD-isg~It~v~~~~~~~i~~~~~~~~~~~ 100 (135)
-.||.|+ |++|-.. +.+.+-.+.|+++.||
T Consensus 62 dVNp~F~~i~~Fe~t----~e~~lFdl~~I~LvHG 92 (121)
T PF04424_consen 62 DVNPKFTGIDGFEDT----PELSLFDLFNIPLVHG 92 (121)
T ss_pred eeeeEecccCCcCCC----ccchhHHhhCCCceee
Confidence 3799999 7787532 3455666789999997
No 33
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=25.59 E-value=64 Score=25.12 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.0
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
+..+|.+|+++++||.+.
T Consensus 175 ~aa~a~va~~~~vp~~~i 192 (230)
T PRK05584 175 GAAIAQVCHEFGVPFVVV 192 (230)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 567899999999999986
No 34
>PRK08236 hypothetical protein; Provisional
Probab=25.47 E-value=63 Score=25.82 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|-+|+.++|||.+.
T Consensus 163 gaAvA~vc~~~~vPf~~i 180 (212)
T PRK08236 163 GFGVAEAAAAAGLPVLEL 180 (212)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 567899999999999986
No 35
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=24.93 E-value=66 Score=26.18 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=16.2
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|..|+.++|||.+.
T Consensus 150 gaAvAqVc~~~~vPfl~i 167 (212)
T PRK06026 150 TYAVLRACQAFGVPLIGL 167 (212)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578899999999999986
No 36
>PRK10342 glycerate kinase I; Provisional
Probab=24.65 E-value=70 Score=28.42 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=20.6
Q ss_pred HHHHHHHhhhCCCcEEEeccCCccCC
Q psy6711 9 NLQIAVSAKHHKVPFFIAAPWTSIDL 34 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaAP~stfD~ 34 (135)
.+.+|-.||.|+||+++.+.+-..+.
T Consensus 305 p~gVa~~A~~~~vPviai~G~~~~~~ 330 (381)
T PRK10342 305 PIGVANVAKKYHKPVIGIAGSLTDDV 330 (381)
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCh
Confidence 45678889999999999987655544
No 37
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=24.60 E-value=58 Score=29.16 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHhhhCCCcEEEeccCCccCCC
Q psy6711 10 LQIAVSAKHHKVPFFIAAPWTSIDLD 35 (135)
Q Consensus 10 y~LALaAk~h~VPFyVaAP~stfD~~ 35 (135)
..+|-+||.|+||+++.|.+-..|..
T Consensus 306 igVA~~Akk~~vPvIaiaGs~~~~~~ 331 (378)
T COG1929 306 IGVAKLAKKYGVPVIAIAGSLGEDYE 331 (378)
T ss_pred hHHHHhhhhhCCCEEEEecccccCcc
Confidence 45778899999999999987666654
No 38
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=24.56 E-value=65 Score=26.10 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.8
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
+.++|.+|++++|||.+.
T Consensus 178 ~aaia~v~~~~~vP~~~i 195 (234)
T COG0775 178 GAAIAQVCYRFGVPFLVL 195 (234)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 357899999999999987
No 39
>PRK09932 glycerate kinase II; Provisional
Probab=24.37 E-value=69 Score=28.45 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=20.2
Q ss_pred HHHHHHHhhhCCCcEEEeccCCccC
Q psy6711 9 NLQIAVSAKHHKVPFFIAAPWTSID 33 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaAP~stfD 33 (135)
.+.+|-+|+.|+||+++.+.+-..+
T Consensus 305 p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 305 PLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCC
Confidence 4678889999999999998765444
No 40
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=23.85 E-value=69 Score=23.67 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=28.1
Q ss_pred EeeeeccceeeecCCCCCCceeEeecceeeecCCcceee
Q psy6711 68 KGTFQSHSGSINKVEDLPEMSIVELEDVKIIQDDHTIHK 106 (135)
Q Consensus 68 ~NPAFDisg~It~v~~~~~~~i~~~~~~~~~~~~~~~~~ 106 (135)
++-+|=++|.|||.|+++.... ...++++.+++..+.
T Consensus 60 ~~~~~~v~g~V~N~g~~~i~~c--~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 60 YSESFYVDGTVTNTGKFTIKKC--KITVKLYNDKQVSGN 96 (149)
T ss_pred eccEEEEEEEEEECCCCEeeEE--EEEEEEEeCCCccCc
Confidence 4556669999999999999988 677777776654443
No 41
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=23.80 E-value=67 Score=28.05 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.2
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
+..+|.+|+.++|||++.
T Consensus 173 ~aava~va~~~~vp~~~i 190 (459)
T PRK06698 173 GAAIGHVAYINEVPFLVI 190 (459)
T ss_pred hHHHHHHHHHcCCCEEEE
Confidence 567999999999999986
No 42
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=22.91 E-value=75 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=20.9
Q ss_pred HHHHHHHhhhCCCcEEEeccCCccCC
Q psy6711 9 NLQIAVSAKHHKVPFFIAAPWTSIDL 34 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaAP~stfD~ 34 (135)
.+.+|-+|+.|+||+++.+.+...+.
T Consensus 304 p~~Va~~A~~~~vPviai~G~v~~~~ 329 (375)
T TIGR00045 304 PVGVAKRAKKYGVPVIAIAGSLGDGV 329 (375)
T ss_pred HHHHHHHHHHhCCeEEEEecccCCCh
Confidence 46788899999999999987665443
No 43
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=22.46 E-value=77 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.9
Q ss_pred HHHHHHHhhhCCCcEEEe
Q psy6711 9 NLQIAVSAKHHKVPFFIA 26 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVa 26 (135)
++.+|.+|+.++|||.+.
T Consensus 173 saava~va~~~~vP~~~I 190 (222)
T TIGR03664 173 GFAVALAALRYGVPFLEL 190 (222)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 467889999999999987
No 44
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=22.05 E-value=67 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=18.6
Q ss_pred HHHHHHhhhCCCcEEEeccCCcc
Q psy6711 10 LQIAVSAKHHKVPFFIAAPWTSI 32 (135)
Q Consensus 10 y~LALaAk~h~VPFyVaAP~stf 32 (135)
-.|.-+|++++||+++++...+-
T Consensus 160 ~~Lk~lA~~~~i~vi~~sQlnr~ 182 (259)
T PF03796_consen 160 RELKALAKELNIPVIALSQLNRE 182 (259)
T ss_dssp HHHHHHHHHHTSEEEEEEEBSGG
T ss_pred HHHHHHHHHcCCeEEEccccChh
Confidence 35677999999999999876653
No 45
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=21.98 E-value=70 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=6.8
Q ss_pred ccceEEEechhh
Q psy6711 109 ARINIIFSDCDK 120 (135)
Q Consensus 109 ~~~~~~~~~~~~ 120 (135)
++..++.+|||.
T Consensus 49 ~~~~~~~v~~~~ 60 (109)
T cd03002 49 GLVQVAAVDCDE 60 (109)
T ss_pred CCceEEEEecCc
Confidence 345556666665
No 46
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=21.69 E-value=45 Score=27.69 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=24.1
Q ss_pred HhhhCCCcEEEeccCCccCCCCCCCCceeeeecCcccccccc
Q psy6711 15 SAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVA 56 (135)
Q Consensus 15 aAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~ 56 (135)
++++|++|+++.+ +..-..|.|+|.|+..+.
T Consensus 161 L~rKYd~P~VISS-----------~A~s~~~lRsPRdl~aL~ 191 (216)
T PRK03892 161 LVNKYKVPRFITS-----------SAESKWEVRGPRDLMSLG 191 (216)
T ss_pred HHHHcCCCEEEec-----------CcchhccCCCHHHHHHHH
Confidence 6899999999885 345567789998887653
No 47
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=21.66 E-value=82 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.0
Q ss_pred hHHHHHHHhhhCCCcEEEec
Q psy6711 8 WNLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 8 GTy~LALaAk~h~VPFyVaA 27 (135)
=++.++.+|+++++||.++-
T Consensus 176 E~aa~~~~a~~~~ip~~~i~ 195 (234)
T PF01048_consen 176 ESAAVAQAARERGIPFIAIR 195 (234)
T ss_dssp SHHHHHHHHHHTT-EEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEEE
Confidence 36788999999999999763
No 48
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=20.97 E-value=85 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=17.3
Q ss_pred hHHHHHHHhhhCCCcEEEec
Q psy6711 8 WNLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 8 GTy~LALaAk~h~VPFyVaA 27 (135)
-|...|.+|++.|+||.++.
T Consensus 184 e~~~e~~~A~~~gi~~~~i~ 203 (261)
T PRK08666 184 TQVPEAVLARELEMCYATVA 203 (261)
T ss_pred chHHHHHHHHHCCCcEEEEE
Confidence 46788999999999999874
No 49
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=20.25 E-value=91 Score=25.46 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=27.0
Q ss_pred hhHHH--HHHHhhhCCCcEEEeccCCc----cCCCCCCCCceeeee
Q psy6711 7 KWNLQ--IAVSAKHHKVPFFIAAPWTS----IDLDIPNGDAIVIEE 46 (135)
Q Consensus 7 iGTy~--LALaAk~h~VPFyVaAP~st----fD~~~~~g~dI~IEe 46 (135)
.|.+. +|.+|+.+|+|+.|..|... .+.....|.++....
T Consensus 65 sGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~ 110 (298)
T TIGR01139 65 SGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTP 110 (298)
T ss_pred CChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEEC
Confidence 45554 55679999999999988653 334445676666543
Done!