Query psy6711
Match_columns 135
No_of_seqs 127 out of 956
Neff 4.5
Searched_HMMs 29240
Date Sat Aug 17 01:04:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w2w_B 5-methylthioribose-1-ph 99.9 2.5E-28 8.4E-33 191.8 3.9 88 2-89 67-182 (191)
2 1t9k_A Probable methylthioribo 99.9 3.9E-28 1.3E-32 205.2 4.5 89 2-90 243-337 (347)
3 3a11_A Translation initiation 99.9 3.5E-28 1.2E-32 204.4 3.4 88 2-90 225-319 (338)
4 2yvk_A Methylthioribose-1-phos 99.9 5.8E-28 2E-32 206.1 4.3 88 2-89 268-361 (374)
5 1t5o_A EIF2BD, translation ini 99.9 6.7E-28 2.3E-32 204.0 4.6 90 2-92 240-335 (351)
6 2a0u_A Initiation factor 2B; S 99.9 7.7E-28 2.6E-32 205.9 4.1 94 2-95 272-376 (383)
7 3ecs_A Translation initiation 99.9 8.9E-24 3E-28 176.9 3.5 85 2-89 205-296 (315)
8 1vb5_A Translation initiation 99.9 3.9E-23 1.3E-27 168.8 4.0 76 2-89 193-274 (276)
9 3eei_A 5-methylthioadenosine n 34.4 25 0.00087 26.2 2.7 19 9-27 179-197 (233)
10 3u40_A Pnpase, purine nucleosi 33.8 14 0.00049 28.4 1.3 36 9-47 190-226 (242)
11 2wk1_A NOVP; transferase, O-me 31.9 18 0.0006 29.1 1.5 28 93-120 189-219 (282)
12 3nm6_B MTA/SAH nucleosidase; h 30.7 25 0.00086 26.1 2.1 19 9-27 176-194 (230)
13 3o4v_A MTA/SAH nucleosidase; m 30.5 25 0.00087 26.2 2.1 20 8-27 176-195 (234)
14 3dp9_A MTA/SAH nucleosidase; v 30.0 26 0.0009 26.0 2.1 19 9-27 176-194 (231)
15 3uaw_A PNP, purine nucleoside 29.0 21 0.00072 27.1 1.5 19 9-27 182-200 (235)
16 1zos_A 5'-methylthioadenosine 26.5 42 0.0014 24.7 2.7 19 9-27 175-193 (230)
17 4g41_A MTA/SAH nucleosidase; m 25.2 46 0.0016 24.7 2.7 19 9-27 180-198 (236)
18 3cwc_A Putative glycerate kina 23.7 45 0.0015 28.4 2.7 25 10-34 309-333 (383)
19 3bsf_A AT4G34840, nucleosidase 22.9 53 0.0018 25.0 2.7 19 9-27 190-208 (254)
20 3bl6_A 5'-methylthioadenosine 22.8 43 0.0015 24.6 2.1 19 9-27 176-194 (230)
21 2h8g_A 5'-methylthioadenosine 21.7 56 0.0019 25.3 2.7 19 9-27 203-221 (267)
22 3dcg_E Virion infectivity fact 21.5 38 0.0013 20.2 1.3 12 5-16 3-15 (39)
23 1z34_A Purine nucleoside phosp 20.8 58 0.002 24.3 2.5 19 9-27 182-200 (235)
24 3b79_A Toxin secretion ATP-bin 20.4 44 0.0015 22.2 1.6 19 6-24 6-24 (129)
No 1
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.94 E-value=2.5e-28 Score=191.83 Aligned_cols=88 Identities=28% Similarity=0.336 Sum_probs=82.2
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCe----------------------e
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGI----------------------H 59 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~----------------------~ 59 (135)
|+.||+|||++|++||+|+|||||+||++|||+.++.|++|+||+|+|+|++.+.|. +
T Consensus 67 ~v~nkiGT~~~Al~Ak~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~ 146 (191)
T 1w2w_B 67 DTANKIGTLQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVG 146 (191)
T ss_dssp CEEEETTHHHHHHHHHHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEE
T ss_pred CEEecccHHHHHHHHHHcCCCEEEecccceeeeccCCcceeecccCCHHHhccccCcccccccccccccccccccccccc
Confidence 588999999999999999999999999999999999999999999999999998664 4
Q ss_pred ecCCCceeEeeeec------cceeeecCCCCCCcee
Q psy6711 60 VAASDCGSKGTFQS------HSGSINKVEDLPEMSI 89 (135)
Q Consensus 60 iap~~v~V~NPAFD------isg~It~v~~~~~~~i 89 (135)
+++++++++||+|| |+++|||.|-++||.+
T Consensus 147 ~~~~~~~v~Np~fDvTP~~lIt~iITE~Gv~~ps~~ 182 (191)
T 1w2w_B 147 IAPLEINVWNPAFDITPHELIDGIITEEGVFTKNSS 182 (191)
T ss_dssp CSCTTCEECCBSEEEECGGGCSEEEETTEEECCCTT
T ss_pred ccCCCccccccccccCCHHHcCEEEecCcccCCCCc
Confidence 67889999999999 9999999999988765
No 2
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=99.94 E-value=3.9e-28 Score=205.24 Aligned_cols=89 Identities=27% Similarity=0.337 Sum_probs=85.5
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+.+++|++|+||+|+|+|++.+.|.+++|++++++||+|| |+
T Consensus 243 ~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt 322 (347)
T 1t9k_A 243 DTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEGVKVLNPAFDVTENTLIT 322 (347)
T ss_dssp CEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTEECSCTTCEECCBSEEEECGGGCS
T ss_pred CEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhccccCCeeccCCCccccCcccccCCHHHCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeeecCCCCCCceeE
Q psy6711 76 GSINKVEDLPEMSIV 90 (135)
Q Consensus 76 g~It~v~~~~~~~i~ 90 (135)
++|||.|-++|++..
T Consensus 323 ~iITE~Gv~~p~~~~ 337 (347)
T 1t9k_A 323 AIITEKGVIRPPFEE 337 (347)
T ss_dssp EEEETTEEECSSHHH
T ss_pred EEeccCCccCcchHH
Confidence 999999999998753
No 3
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=99.94 E-value=3.5e-28 Score=204.44 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=83.8
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeec-CCCceeEeeeec------c
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVA-ASDCGSKGTFQS------H 74 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~ia-p~~v~V~NPAFD------i 74 (135)
|+.||+|||++|++||+|+|||||+||++|||+.+++|++|+||+|+|+||+.+ |.+++ |++++++||+|| |
T Consensus 225 ~v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~-g~~~~w~~~v~v~NPaFDvTP~~lI 303 (338)
T 3a11_A 225 AVINKIGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE-DELKTWPKNIEVWNPAFDVTPPEYV 303 (338)
T ss_dssp CEEEETTHHHHHHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH-HHHTTSCTTEEECCBSEEEECGGGC
T ss_pred CEeecccHHHHHHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc-cccccCCCCceecCcceeccCHHHc
Confidence 588999999999999999999999999999999999999999999999999998 77777 899999999999 9
Q ss_pred ceeeecCCCCCCceeE
Q psy6711 75 SGSINKVEDLPEMSIV 90 (135)
Q Consensus 75 sg~It~v~~~~~~~i~ 90 (135)
+++|||.|.++|+++.
T Consensus 304 t~iITE~Gv~~p~~v~ 319 (338)
T 3a11_A 304 DVIITERGIIPPYAAI 319 (338)
T ss_dssp SEEEETTEEECGGGHH
T ss_pred CEEecCCCccCchhHH
Confidence 9999999999999873
No 4
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=99.94 E-value=5.8e-28 Score=206.11 Aligned_cols=88 Identities=25% Similarity=0.341 Sum_probs=85.1
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
++.||+|||++|++||+|+||||||||++|||+.+++|++|+||+|+|+|++.+.|.+++|++++++||+|| |+
T Consensus 268 ~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt 347 (374)
T 2yvk_A 268 DTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLIS 347 (374)
T ss_dssp CEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTEECSCTTCCBCCBSEEEECGGGCS
T ss_pred CEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccCCceecCCCcceeCcceeccCHHHCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|-++|++.
T Consensus 348 ~iITE~Gv~~P~~~ 361 (374)
T 2yvk_A 348 GIITEKGIMTGNYE 361 (374)
T ss_dssp EEEETTEEECSCHH
T ss_pred EEeccCCccCcchH
Confidence 99999999999875
No 5
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=99.94 E-value=6.7e-28 Score=204.03 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=84.8
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|+|||||+||++|||+. ++|++|+||+|+|+|++.+.|.+++|++++++||+|| |+
T Consensus 240 Gv~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt 318 (351)
T 1t5o_A 240 AVFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPTPLENVT 318 (351)
T ss_dssp EEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHHEETTEECSCTTCEECCBSEEEEEGGGCS
T ss_pred CcccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhcccCCeeecCCCcceeCccccCCCHHHCC
Confidence 4679999999999999999999999999999999 9999999999999999999999999999999999999 99
Q ss_pred eeeecCCCCCCceeEee
Q psy6711 76 GSINKVEDLPEMSIVEL 92 (135)
Q Consensus 76 g~It~v~~~~~~~i~~~ 92 (135)
++|||.|.++|++..++
T Consensus 319 ~iITE~Gv~~p~~~~~l 335 (351)
T 1t5o_A 319 ALITEYGVIYPPYEVNV 335 (351)
T ss_dssp EEEETTEEECSCHHHHH
T ss_pred EEEeCCCccCcchHHHH
Confidence 99999999999975333
No 6
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=99.94 E-value=7.7e-28 Score=205.87 Aligned_cols=94 Identities=26% Similarity=0.294 Sum_probs=86.6
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccc--cCeeecCCC--ceeEeeeec----
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHV--AGIHVAASD--CGSKGTFQS---- 73 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~--~g~~iap~~--v~V~NPAFD---- 73 (135)
++.||+|||++|++||+|+||||||||++|||+.+++|++|+||+|+|+||+.+ .|.+++|++ ++++||+||
T Consensus 272 ~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~~~g~~~a~~~~~v~v~NPaFDvTP~ 351 (383)
T 2a0u_A 272 DTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPS 351 (383)
T ss_dssp CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTCCBCSCCCTTEEECCBSEEEECG
T ss_pred CEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhcccccCCceecCCCCceeeecccccccCh
Confidence 588999999999999999999999999999999999999999999999999998 788888999 999999999
Q ss_pred --cc-eeeecCCCCCCceeEeecce
Q psy6711 74 --HS-GSINKVEDLPEMSIVELEDV 95 (135)
Q Consensus 74 --is-g~It~v~~~~~~~i~~~~~~ 95 (135)
|+ ++|||.|-++|+...+..++
T Consensus 352 ~lIt~~iITE~Gv~~p~~~~~~~~~ 376 (383)
T 2a0u_A 352 ELITGGIITEKGVQAPAASAPYYDI 376 (383)
T ss_dssp GGCCSEEECSSCEECCCSSSSCCCH
T ss_pred HHCCcEEEccCCccCCccchhhcCH
Confidence 99 99999999988766544443
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=99.88 E-value=8.9e-24 Score=176.88 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=68.6
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCC-CCceeeeecCccccccccCeeecCCCceeEeeeec------c
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPN-GDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------H 74 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~-g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------i 74 (135)
|+.||+|||++|++||+|+|||||+||++||++.++. ++++++|+|++.|++.+.+ .|++++++||+|| |
T Consensus 205 ~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~~~~ev~~~~~---~~~~v~v~NP~fDvTP~~lI 281 (315)
T 3ecs_A 205 GIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQ---TGQDLKEEHPWVDYTAPSLI 281 (315)
T ss_dssp CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGTC----------------CCBCCCSEEEECGGGC
T ss_pred CeeehhhhHHHHHHHHHhCCCEEEEeccccccccCCCCcccCCccccChhhcccccc---CCCcCcCCCCCccCCCHHHc
Confidence 6899999999999999999999999999999999874 5788999999999987754 5689999999999 9
Q ss_pred ceeeecCCCCCCcee
Q psy6711 75 SGSINKVEDLPEMSI 89 (135)
Q Consensus 75 sg~It~v~~~~~~~i 89 (135)
+++|||.|.++|+++
T Consensus 282 t~iITe~Gv~~p~~v 296 (315)
T 3ecs_A 282 TLLFTDLGVLTPSAV 296 (315)
T ss_dssp SEEEETTEEECGGGH
T ss_pred CEEEcCCCCCCcchh
Confidence 999999999999987
No 8
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.87 E-value=3.9e-23 Score=168.78 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=72.6
Q ss_pred CccchhhHHHHHHHhhhCCCcEEEeccCCccCCCCCCCCceeeeecCccccccccCeeecCCCceeEeeeec------cc
Q psy6711 2 GIKPIKWNLQIAVSAKHHKVPFFIAAPWTSIDLDIPNGDAIVIEERPSQEMTHVAGIHVAASDCGSKGTFQS------HS 75 (135)
Q Consensus 2 Gi~aKiGTy~LALaAk~h~VPFyVaAP~stfD~~~~~g~dI~IEeR~p~EVl~~~g~~iap~~v~V~NPAFD------is 75 (135)
|+.||+|||++|++||+|++||||+||++||++. .++++++||+|+++| +++++|||+|| |+
T Consensus 193 ~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K~~~~-~~~~~i~iE~r~~~e-----------~~v~v~np~fD~tP~~lI~ 260 (276)
T 1vb5_A 193 YVVNKAGTYLLALACHENAIPFYVAAETYKFHPT-LKSGDVMLMERDLIR-----------GNVRIRNVLFDVTPWKYVR 260 (276)
T ss_dssp CEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSS-CCGGGCCCCBCCCEE-----------TTEECCCBCEEEECGGGCS
T ss_pred CEeechhHHHHHHHHHHcCCCEEEeccccccCcc-cCccccccccCCccc-----------cCccccCCCeEecCHHHCC
Confidence 6889999999999999999999999999999999 999999999999998 67899999999 99
Q ss_pred eeeecCCCCCCcee
Q psy6711 76 GSINKVEDLPEMSI 89 (135)
Q Consensus 76 g~It~v~~~~~~~i 89 (135)
++|||.|.++|+++
T Consensus 261 ~iITe~Gv~~p~~v 274 (276)
T 1vb5_A 261 GIITELGIVIPPRD 274 (276)
T ss_dssp EEEETTEEECTTTT
T ss_pred EEEeCCCccCcccc
Confidence 99999998999876
No 9
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=34.42 E-value=25 Score=26.16 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.8
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.+|.+|+++++||.+..
T Consensus 179 ~aa~a~~a~~~gip~~~ir 197 (233)
T 3eei_A 179 AAAIAQTCHQLETPFVIIR 197 (233)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5788999999999999874
No 10
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A*
Probab=33.75 E-value=14 Score=28.41 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=24.0
Q ss_pred HHHHHHHhhhCCCcEEEeccCCccCC-CCCCCCceeeeec
Q psy6711 9 NLQIAVSAKHHKVPFFIAAPWTSIDL-DIPNGDAIVIEER 47 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaAP~stfD~-~~~~g~dI~IEeR 47 (135)
+..+|.+|+++++|+.+.. .++- +..+++.+.-|+|
T Consensus 190 saal~~va~~~gi~~~~i~---~ISD~~~~~~e~~~~~e~ 226 (242)
T 3u40_A 190 AAALYMIAARARKQALCML---TISDLCYGSGEKMTAEER 226 (242)
T ss_dssp HHHHHHHHHHHTCEEEEEE---EEEEESSTTCCBCCHHHH
T ss_pred HHHHHHHHHHcCCCEEEEE---EEEcCcccCCCcCCHHHH
Confidence 6788999999999999774 2332 3445554444554
No 11
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=31.87 E-value=18 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=20.8
Q ss_pred cceeeecCCc--ceeecc-ccceEEEechhh
Q psy6711 93 EDVKIIQDDH--TIHKMS-ARINIIFSDCDK 120 (135)
Q Consensus 93 ~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 120 (135)
.++.++.||- |+.++. +++.+|++|||+
T Consensus 189 ~~I~li~Gda~etL~~~~~~~~d~vfIDaD~ 219 (282)
T 2wk1_A 189 EQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL 219 (282)
T ss_dssp TTEEEEESCHHHHSTTCCCCCEEEEEECCCS
T ss_pred CceEEEEeCHHHHHhhCCCCCEEEEEEcCCc
Confidence 3467777764 666663 689999999997
No 12
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A*
Probab=30.66 E-value=25 Score=26.05 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=16.8
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.+|.+|+++++||.+..
T Consensus 176 ~aa~a~~a~~~gi~~~~ir 194 (230)
T 3nm6_B 176 GASVAFVCQKFGVPCCVLR 194 (230)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6788999999999999874
No 13
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=30.50 E-value=25 Score=26.17 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.2
Q ss_pred hHHHHHHHhhhCCCcEEEec
Q psy6711 8 WNLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 8 GTy~LALaAk~h~VPFyVaA 27 (135)
=++.+|.+|+++++||.+..
T Consensus 176 E~aa~a~va~~~~ip~~~ir 195 (234)
T 3o4v_A 176 EATAIAHVCHNFNVPFVVVR 195 (234)
T ss_dssp SHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHHHHHHhCCCEEEEE
Confidence 36788999999999999874
No 14
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1
Probab=30.00 E-value=26 Score=26.04 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=16.7
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.+|.+|+++++||.+..
T Consensus 176 ~aa~a~~a~~~~ip~~~ir 194 (231)
T 3dp9_A 176 ASAIAQTCHQFKVPFVVVR 194 (231)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5788999999999999874
No 15
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A*
Probab=29.01 E-value=21 Score=27.14 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
+..+|.+|+++++||.+..
T Consensus 182 ~aa~~~va~~~gi~~~~i~ 200 (235)
T 3uaw_A 182 TTALYTLAAKYGVNALSVL 200 (235)
T ss_dssp HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5778999999999999773
No 16
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*
Probab=26.48 E-value=42 Score=24.66 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.+|.+|+++++||.+..
T Consensus 175 ~aa~~~~a~~~~~~~~~ir 193 (230)
T 1zos_A 175 GAAIAQAAHTLNLPVLVIR 193 (230)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6778999999999999774
No 17
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes}
Probab=25.20 E-value=46 Score=24.70 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
+..+|.+|+++++||.+.-
T Consensus 180 ~aa~~~va~~~~~p~~~Ir 198 (236)
T 4g41_A 180 GAAIAQAAHTAGKPFIVVR 198 (236)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5778899999999999874
No 18
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=23.66 E-value=45 Score=28.36 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=18.5
Q ss_pred HHHHHHhhhCCCcEEEeccCCccCC
Q psy6711 10 LQIAVSAKHHKVPFFIAAPWTSIDL 34 (135)
Q Consensus 10 y~LALaAk~h~VPFyVaAP~stfD~ 34 (135)
+.+|-+||.|+||+++.|.+-..+.
T Consensus 309 ~gVa~~A~~~~vPviaiaG~~~~~~ 333 (383)
T 3cwc_A 309 IGVANIAKRYNKPVIGIAGSLTADV 333 (383)
T ss_dssp HHHHHHHHHTTCCEEEEEEECC---
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCh
Confidence 5677889999999999987665443
No 19
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana}
Probab=22.86 E-value=53 Score=25.00 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.4
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
+..+|.+|+++++||.+..
T Consensus 190 ~aa~a~va~~~~ip~~~Ir 208 (254)
T 3bsf_A 190 GAAVAYVADIFKVPTILIK 208 (254)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5678899999999999764
No 20
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}
Probab=22.80 E-value=43 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.+|.+|+++++||.+..
T Consensus 176 ~a~~~~~a~~~~~~~~~ir 194 (230)
T 3bl6_A 176 ATAIAQTCYQFNVPFVVVR 194 (230)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5778899999999999874
No 21
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A*
Probab=21.75 E-value=56 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.4
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.+|.+|+++++||.+..
T Consensus 203 ~aa~a~va~~~gip~~~Ir 221 (267)
T 2h8g_A 203 GAAVAYVADLLKIPVVFLK 221 (267)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5778999999999999764
No 22
>3dcg_E Virion infectivity factor; HIV, VIF, AIDS, HOST-virus interaction, membrane, phosphoPro RNA-binding, UBL conjugation pathway; 2.40A {Human immunodeficiency virus type 1}
Probab=21.53 E-value=38 Score=20.23 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=8.4
Q ss_pred chhhHHH-HHHHh
Q psy6711 5 PIKWNLQ-IAVSA 16 (135)
Q Consensus 5 aKiGTy~-LALaA 16 (135)
+|+|+.| +||.|
T Consensus 3 nkVGsLQyLAL~a 15 (39)
T 3dcg_E 3 NKVGSLQYLALAA 15 (39)
T ss_pred cchhHHHHHHHHH
Confidence 6889887 45554
No 23
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A*
Probab=20.77 E-value=58 Score=24.27 Aligned_cols=19 Identities=5% Similarity=-0.284 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCCCcEEEec
Q psy6711 9 NLQIAVSAKHHKVPFFIAA 27 (135)
Q Consensus 9 Ty~LALaAk~h~VPFyVaA 27 (135)
++.++.+|+++++||.+..
T Consensus 182 ~aa~~~~a~~~gi~~~~i~ 200 (235)
T 1z34_A 182 SAGLFPIADLYGARAGCIC 200 (235)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEE
Confidence 5678899999999999774
No 24
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.41 E-value=44 Score=22.15 Aligned_cols=19 Identities=0% Similarity=-0.286 Sum_probs=16.1
Q ss_pred hhhHHHHHHHhhhCCCcEE
Q psy6711 6 IKWNLQIAVSAKHHKVPFF 24 (135)
Q Consensus 6 KiGTy~LALaAk~h~VPFy 24 (135)
.+|--.+|.+|++||+|+=
T Consensus 6 dcgla~L~~i~~~~g~~~~ 24 (129)
T 3b79_A 6 DPLLNSLIYVSRYYGLANS 24 (129)
T ss_dssp CHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhCCCCC
Confidence 4677889999999999874
Done!